Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RAP44 | Genbank acc : NC_019490

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 80

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	24	lcl\|NC_019490.1_cdsid_YP_007003622.1	HHsearch (proba=100.00%)
Portal	34	lcl\|NC_019490.1_cdsid_YP_007003632.1	HHsearch (proba=100.00%)
TermL	35	lcl\|NC_019490.1_cdsid_YP_007003633.1	Blast (e-value=2e-26)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	23	lcl\|NC_019490.1_cdsid_YP_007003621.1	HHsearch (proba=93.61%)
Hc1	22	lcl\|NC_019490.1_cdsid_YP_007003620.1	HHsearch (proba=70.28%)
Ne1	21	lcl\|NC_019490.1_cdsid_YP_007003619.1	HHsearch (proba=98.83%)
Tc1	20	lcl\|NC_019490.1_cdsid_YP_007003618.1	HHsearch (proba=94.57%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:98480 protein:vir:4902 protein:vir:106590	VWB Sfi11 Lj965	20 % 20 % 19 %
Portal	protein:vir:96494 protein:vir:4898 protein:vir:2732	2972 Sfi11 O1205	21 % 20 % 20 %
TermL	protein:vir:78831 protein:vir:103950 protein:vir:96370	80alpha phiNM 53	25 % 25 % 25 %
Ad1	protein:vir:9928 protein:vir:78849 protein:vir:103957	315.6 80alpha phiNM	17 % 14 % 14 %
Hc1	protein:vir:5977 protein:vir:100134	SPP1 phi1026b	11 % 11 %
Ne1	protein:vir:94654 protein:vir:105467 protein:vir:5978	mu1/6 KC5a SPP1	20 % 22 % 18 %
Tc1	protein:vir:96125 protein:vir:1244 protein:vir:744	37 phi ETA Tuc2009	14 % 14 % 13 %