Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : JCL1032 | Genbank acc : NC_019456

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 77

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|NC_019456.1_cdsid_YP_007002970.1	HHsearch (proba=100.00%)
Portal	6	lcl\|NC_019456.1_cdsid_YP_007002969.1	HHsearch (proba=100.00%)
TermL	5	lcl\|NC_019456.1_cdsid_YP_007002968.1	Blast (e-value=1e-167)
MTP	14	lcl\|NC_019456.1_cdsid_YP_007002977.1	Blast (e-value=5e-37)
Sheath	NOT FOUND
Ad1	10	lcl\|NC_019456.1_cdsid_YP_007002973.1	HHsearch (proba=100.00%)
Hc1	11	lcl\|NC_019456.1_cdsid_YP_007002974.1	HHsearch (proba=100.00%)
Ne1	12	lcl\|NC_019456.1_cdsid_YP_007002975.1	HHsearch (proba=100.00%)
Tc1	13	lcl\|NC_019456.1_cdsid_YP_007002976.1	HHsearch (proba=99.83%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79548	cdtI	39 %
Portal	protein:vir:9359 protein:vir:2683 protein:vir:78641	phi 12 phiSLT tp310-2	36 % 35 % 35 %
TermL	protein:vir:2682 protein:vir:78630 protein:vir:96981	phiSLT tp310-2 42e	53 % 52 % 52 %
MTP	protein:vir:4957 protein:vir:4861 protein:vir:5002	Sfi19 DT1 Sfi21	40 % 40 % 40 %
Ad1	protein:vir:9412 protein:vir:4702 protein:vir:79990	phi 13 phiPV83 tp310-3	25 % 24 % 24 %
Hc1	protein:vir:4955 protein:vir:4858 protein:vir:4832	Sfi19 DT1 7201	33 % 33 % 32 %
Ne1	protein:vir:4956 protein:vir:5000 protein:vir:4833	Sfi19 Sfi21 7201	23 % 23 % 21 %
Tc1	protein:vir:100200 protein:vir:100888 protein:vir:4834	phi AT3 Lc-Nu 7201	18 % 13 % 21 %