Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 7201 | Genbank acc : NC_002185 | Aclame index mge :105

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 46

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	28	lcl\|Aclame:protein:vir:4830\|NCBI_annot:MPL-7201\|genbank:acc:NP_038327;genbank:gi:9634653;genbank:Gen	HHsearch (proba=100.00%)
Portal	26	lcl\|Aclame:protein:vir:4828\|NCBI_annot:ORF24\|genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID	HHsearch (proba=100.00%)
TermL	24	lcl\|Aclame:protein:vir:4826\|NCBI_annot:ORF22\|genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID	Blast (e-value=0)
MTP	33	lcl\|Aclame:protein:vir:4835\|NCBI_annot:MPS-7201\|genbank:acc:NP_038332;genbank:gi:9634658;genbank:Gen	Blast (e-value=1e-118)
Sheath	NOT FOUND
Ad1	29	lcl\|Aclame:protein:vir:4831\|NCBI_annot:ORF27\|genbank:acc:NP_038328;genbank:gi:9634654;genbank:GeneID	HHsearch (proba=100.00%)
Hc1	30	lcl\|Aclame:protein:vir:4832\|NCBI_annot:ORF28\|genbank:acc:NP_038329;genbank:gi:9634655;genbank:GeneID	HHsearch (proba=100.00%)
Ne1	31	lcl\|Aclame:protein:vir:4833\|NCBI_annot:ORF29\|genbank:acc:NP_038330;genbank:gi:9634656;genbank:GeneID	HHsearch (proba=100.00%)
Tc1	32	lcl\|Aclame:protein:vir:4834\|NCBI_annot:ORF30\|genbank:acc:NP_038331;genbank:gi:9634657;genbank:GeneID	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4830 protein:vir:4953 protein:vir:4997	7201 Sfi19 Sfi21	100 % 94 % 90 %
Portal	protein:vir:4828 protein:vir:4854 protein:vir:4995	7201 DT1 Sfi21	100 % 88 % 83 %
TermL	protein:vir:4826 protein:vir:4852 protein:vir:4950	7201 DT1 Sfi19	100 % 85 % 72 %
MTP	protein:vir:4835 protein:vir:4957 protein:vir:4861	7201 Sfi19 DT1	100 % 98 % 93 %
Ad1	protein:vir:4831 protein:vir:4954 protein:vir:4998	7201 Sfi19 Sfi21	100 % 90 % 86 %
Hc1	protein:vir:4832 protein:vir:4955 protein:vir:4858	7201 Sfi19 DT1	100 % 96 % 91 %
Ne1	protein:vir:4833 protein:vir:4956 protein:vir:4859	7201 Sfi19 DT1	100 % 94 % 93 %
Tc1	protein:vir:4834 protein:vir:4860 protein:vir:5001	7201 DT1 Sfi21	100 % 94 % 89 %