Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : CcrColossus | Genbank acc : NC_019406

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 448

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	81	lcl\|NC_019406.1_cdsid_YP_006988315.1	HHsearch (proba=100.00%)
Portal	38	lcl\|NC_019406.1_cdsid_YP_006988272.1	HHsearch (proba=100.00%)
TermL	448	lcl\|NC_019406.1_cdsid_YP_006988682.1	Blast (e-value=8e-38)
MTP	115	lcl\|NC_019406.1_cdsid_YP_006988349.1	Blast (e-value=2e-05)
Sheath	NOT FOUND
Ad1	110	lcl\|NC_019406.1_cdsid_YP_006988344.1	HHsearch (proba=100.00%)
Hc1	111	lcl\|NC_019406.1_cdsid_YP_006988345.1	HHsearch (proba=99.77%)
Ne1	112	lcl\|NC_019406.1_cdsid_YP_006988346.1	HHsearch (proba=97.76%)
Tc1	114	lcl\|NC_019406.1_cdsid_YP_006988348.1	HHsearch (proba=96.14%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:97255 protein:vir:94933 protein:vir:105038	M6 Xp15 phiKO2	28 % 24 % 17 %
Portal	protein:vir:94956 protein:vir:95014 protein:vir:78393	Xp15 KS7 SETP3	28 % 24 % 24 %
TermL	protein:vir:103223 protein:vir:5248 protein:vir:80106	JK06 Aaphi23 B054	30 % 27 % 24 %
MTP	protein:vir:78378 protein:vir:97240 protein:vir:95133	SETP3 M6 PA73	22 % 20 % 20 %
Ad1	protein:vir:80389 protein:vir:95176 protein:vir:94955	BcepGomr PA73 Xp15	30 % 25 % 24 %
Hc1	protein:vir:97237 protein:vir:80382 protein:vir:104346	M6 BcepGomr RTP	21 % 17 % 19 %
Ne1	protein:vir:94994 protein:vir:79638 protein:vir:94944	KS7 TLS Xp15	25 % 22 % 21 %
Tc1	protein:vir:94921 protein:vir:95155	Xp15 PA73	20 % 18 %