Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : SV1 | Genbank acc : NC_018848

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|NC_018848.1_cdsid_YP_006906949.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_018848.1_cdsid_YP_006906945.1	HHsearch (proba=100.00%)
TermL	1	lcl\|NC_018848.1_cdsid_YP_006906943.1	Blast (e-value=1e-61)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	9	lcl\|NC_018848.1_cdsid_YP_006906951.1	HHsearch (proba=99.86%)
Hc1	10	lcl\|NC_018848.1_cdsid_YP_006906952.1	HHsearch (proba=98.15%)
Ne1	11	lcl\|NC_018848.1_cdsid_YP_006906953.1	HHsearch (proba=99.80%)
Tc1	12	lcl\|NC_018848.1_cdsid_YP_006906954.1	HHsearch (proba=91.02%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:94933 protein:vir:97255 protein:vir:8102	Xp15 M6 Che9c	20 % 20 % 13 %
Portal	protein:vir:80959 protein:vir:9815 protein:vir:3028	A500 315.4 PhiNIH1.1	19 % 19 % 19 %
TermL	protein:vir:106551 protein:vir:4897 protein:vir:2731	Lj965 Sfi11 O1205	31 % 31 % 31 %
Ad1	protein:vir:4788 protein:vir:80967 protein:vir:43	MM1 A500 A118	26 % 26 % 26 %
Hc1	protein:vir:80934 protein:vir:44 protein:vir:98924	A500 A118 BCJA1c	14 % 14 % 17 %
Ne1	protein:vir:106041 protein:vir:78894 protein:vir:102441	Cooper A006 Pipefish	24 % 22 % 22 %
Tc1	protein:vir:98890 protein:vir:1580 protein:vir:9824	BCJA1c phig1e 315.4	12 % 16 % 13 %