Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 37 lcl|Aclame:protein:vir:4786|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Portal 33 lcl|Aclame:protein:vir:4782|NCBI_annot:putative HHsearch (proba=100.00%)
TermL 32 lcl|Aclame:protein:vir:4781|NCBI_annot:putative Blast (e-value=0)
MTP 43 lcl|Aclame:protein:vir:4792|NCBI_annot:putative Blast (e-value=4e-85)
Sheath NOT FOUND
Ad1 39 lcl|Aclame:protein:vir:4788|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 40 lcl|Aclame:protein:vir:4789|NCBI_annot:putative HHsearch (proba=100.00%)
Ne1 41 lcl|Aclame:protein:vir:4790|NCBI_annot:putative HHsearch (proba=100.00%)
Tc1 42 lcl|Aclame:protein:vir:4791|NCBI_annot:putative HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:4786
protein:vir:94528
protein:vir:98871
MM1
phiJL-1
BCJA1c
100 %
42 %
41 %
Portal protein:vir:4782
protein:vir:9815
protein:vir:3028
MM1
315.4
PhiNIH1.1
100 %
62 %
62 %
TermL protein:vir:4781
protein:vir:98922
protein:vir:80960
MM1
BCJA1c
A500
100 %
66 %
53 %
MTP protein:vir:4792
protein:vir:9825
protein:vir:3038
MM1
315.4
PhiNIH1.1
100 %
70 %
70 %
Ad1 protein:vir:4788
protein:vir:9821
protein:vir:3034
MM1
315.4
PhiNIH1.1
100 %
52 %
50 %
Hc1 protein:vir:4789
protein:vir:9822
protein:vir:3035
MM1
315.4
PhiNIH1.1
100 %
44 %
44 %
Ne1 protein:vir:4790
protein:vir:98892
protein:vir:1581
MM1
BCJA1c
phig1e
100 %
40 %
40 %
Tc1 protein:vir:4791
protein:vir:9824
protein:vir:3037
MM1
315.4
PhiNIH1.1
100 %
43 %
43 %