Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : MM1 | Genbank acc : NC_003050 | Aclame index mge :104

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 53

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	37	lcl\|Aclame:protein:vir:4786\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	33	lcl\|Aclame:protein:vir:4782\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	32	lcl\|Aclame:protein:vir:4781\|NCBI_annot:putative	Blast (e-value=0)
MTP	43	lcl\|Aclame:protein:vir:4792\|NCBI_annot:putative	Blast (e-value=4e-85)
Sheath	NOT FOUND
Ad1	39	lcl\|Aclame:protein:vir:4788\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	40	lcl\|Aclame:protein:vir:4789\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ne1	41	lcl\|Aclame:protein:vir:4790\|NCBI_annot:putative	HHsearch (proba=100.00%)
Tc1	42	lcl\|Aclame:protein:vir:4791\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4786 protein:vir:94528 protein:vir:98871	MM1 phiJL-1 BCJA1c	100 % 42 % 41 %
Portal	protein:vir:4782 protein:vir:9815 protein:vir:3028	MM1 315.4 PhiNIH1.1	100 % 62 % 62 %
TermL	protein:vir:4781 protein:vir:98922 protein:vir:80960	MM1 BCJA1c A500	100 % 66 % 53 %
MTP	protein:vir:4792 protein:vir:9825 protein:vir:3038	MM1 315.4 PhiNIH1.1	100 % 70 % 70 %
Ad1	protein:vir:4788 protein:vir:9821 protein:vir:3034	MM1 315.4 PhiNIH1.1	100 % 52 % 50 %
Hc1	protein:vir:4789 protein:vir:9822 protein:vir:3035	MM1 315.4 PhiNIH1.1	100 % 44 % 44 %
Ne1	protein:vir:4790 protein:vir:98892 protein:vir:1581	MM1 BCJA1c phig1e	100 % 40 % 40 %
Tc1	protein:vir:4791 protein:vir:9824 protein:vir:3037	MM1 315.4 PhiNIH1.1	100 % 43 % 43 %