Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Cooper | Genbank acc : NC_008195 | Aclame index mge :1505

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 99

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	NOT FOUND
Portal	9	lcl\|Aclame:protein:vir:106027\|NCBI_annot:gp9\|genbank:acc:YP_654906;genbank:gi:109392362;genbank:Gene	HHsearch (proba=100.00%)
TermL	4	lcl\|Aclame:protein:vir:106049\|NCBI_annot:gp4\|genbank:acc:YP_654901;genbank:gi:109392357;genbank:Gene	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	20	lcl\|Aclame:protein:vir:106038\|NCBI_annot:gp20\|genbank:acc:YP_654917;genbank:gi:109392373;genbank:Gen	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	23	lcl\|Aclame:protein:vir:106041\|NCBI_annot:gp23\|genbank:acc:YP_654920;genbank:gi:109392376;genbank:Gen	HHsearch (proba=100.00%)
Tc1	21	lcl\|Aclame:protein:vir:106039\|NCBI_annot:gp21\|genbank:acc:YP_654918;genbank:gi:109392374;genbank:Gen	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
Portal	protein:vir:106027 protein:vir:99088 protein:vir:8654	Cooper Qyrzula Rosebush	100 % 55 % 55 %
TermL	protein:vir:106049 protein:vir:97894 protein:vir:107494	Cooper Orion PG1	100 % 67 % 67 %
Ad1	protein:vir:106038 protein:vir:97979 protein:vir:107532	Cooper Orion PG1	100 % 59 % 59 %
Ne1	protein:vir:106041 protein:vir:97982 protein:vir:107545	Cooper Orion PG1	100 % 66 % 66 %
Tc1	protein:vir:106039 protein:vir:97980 protein:vir:107514	Cooper Orion PG1	100 % 63 % 63 %