Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 11 lcl|NC_018831.1_cdsid_YP_006905876.1 HHsearch (proba=100.00%)
Portal 8 lcl|NC_018831.1_cdsid_YP_006905873.1 HHsearch (proba=100.00%)
TermL 7 lcl|NC_018831.1_cdsid_YP_006905872.1 Blast (e-value=3e-94)
MTP 19 lcl|NC_018831.1_cdsid_YP_006905884.1 Blast (e-value=2e-18)
Sheath NOT FOUND
Ad1 14 lcl|NC_018831.1_cdsid_YP_006905879.1 HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 16 lcl|NC_018831.1_cdsid_YP_006905881.1 HHsearch (proba=97.22%)
Tc1 17 lcl|NC_018831.1_cdsid_YP_006905882.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:3613
protein:vir:739
protein:vir:96262
TP901-1
Tuc2009
ROSA
33 %
32 %
31 %
Portal protein:vir:9871
protein:vir:3964
protein:vir:3609
315.5
ul36
TP901-1
30 %
29 %
29 %
TermL protein:vir:103950
protein:vir:99776
protein:vir:96238
phiNM
phiETA2
69
44 %
44 %
43 %
MTP protein:vir:78053P3545 %
Ad1 protein:vir:9928
protein:vir:96488
protein:vir:4904
315.6
2972
Sfi11
25 %
25 %
23 %
Ne1 protein:vir:94654
protein:vir:79034
protein:vir:94796
mu1/6
phiC2
29
27 %
15 %
21 %
Tc1 protein:vir:5979
protein:vir:96894
protein:vir:96260
SPP1
EW
ROSA
23 %
19 %
19 %