Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : P70 | Genbank acc : NC_018831

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 119

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	11	lcl\|NC_018831.1_cdsid_YP_006905876.1	HHsearch (proba=100.00%)
Portal	8	lcl\|NC_018831.1_cdsid_YP_006905873.1	HHsearch (proba=100.00%)
TermL	7	lcl\|NC_018831.1_cdsid_YP_006905872.1	Blast (e-value=3e-94)
MTP	19	lcl\|NC_018831.1_cdsid_YP_006905884.1	Blast (e-value=2e-18)
Sheath	NOT FOUND
Ad1	14	lcl\|NC_018831.1_cdsid_YP_006905879.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	16	lcl\|NC_018831.1_cdsid_YP_006905881.1	HHsearch (proba=97.22%)
Tc1	17	lcl\|NC_018831.1_cdsid_YP_006905882.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:3613 protein:vir:739 protein:vir:96262	TP901-1 Tuc2009 ROSA	33 % 32 % 31 %
Portal	protein:vir:9871 protein:vir:3964 protein:vir:3609	315.5 ul36 TP901-1	30 % 29 % 29 %
TermL	protein:vir:103950 protein:vir:99776 protein:vir:96238	phiNM phiETA2 69	44 % 44 % 43 %
MTP	protein:vir:78053	P35	45 %
Ad1	protein:vir:9928 protein:vir:96488 protein:vir:4904	315.6 2972 Sfi11	25 % 25 % 23 %
Ne1	protein:vir:94654 protein:vir:79034 protein:vir:94796	mu1/6 phiC2 29	27 % 15 % 21 %
Tc1	protein:vir:5979 protein:vir:96894 protein:vir:96260	SPP1 EW ROSA	23 % 19 % 19 %