Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : BC-611 | Genbank acc : NC_018086

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 57

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	14	lcl\|NC_018086.1_cdsid_YP_006488741.1	HHsearch (proba=100.00%)
Portal	11	lcl\|NC_018086.1_cdsid_YP_006488738.1	HHsearch (proba=100.00%)
TermL	8	lcl\|NC_018086.1_cdsid_YP_006488735.1	Blast (e-value=8e-59)
MTP	15	lcl\|NC_018086.1_cdsid_YP_006488742.1	Blast (e-value=1e-05)
Sheath	NOT FOUND
Ad1	16	lcl\|NC_018086.1_cdsid_YP_006488743.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	18	lcl\|NC_018086.1_cdsid_YP_006488745.1	HHsearch (proba=97.30%)
Tc1	19	lcl\|NC_018086.1_cdsid_YP_006488746.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96833 protein:vir:105334 protein:vir:96123	EW PH15 37	37 % 36 % 36 %
Portal	protein:vir:3609 protein:vir:106639 protein:vir:733	TP901-1 187 Tuc2009	26 % 25 % 25 %
TermL	protein:vir:99534 protein:vir:9921 protein:vir:103950	Lj928 315.6 phiNM	42 % 42 % 40 %
MTP	protein:vir:398 protein:vir:79536 protein:vir:78892	N15 cdtI A006	32 % 23 % 23 %
Ad1	protein:vir:2738 protein:vir:96488 protein:vir:3970	O1205 2972 ul36	20 % 20 % 20 %
Ne1	protein:vir:96486 protein:vir:94654 protein:vir:96829	2972 mu1/6 EW	22 % 23 % 24 %
Tc1	protein:vir:96894 protein:vir:105337 protein:vir:107096	EW PH15 CNPH82	20 % 20 % 20 %