Virfam_CNT_anal:NC_016655

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : REQ1 | Genbank acc : NC_016655

Category to which the Query Phage was assigned :

The queried phage was recognized as a Siphoviridae of Type1 (Read more about that Type)
Note that only the Adaptor was detected unambiguously

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 85

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	69	lcl\|NC_016655.1_cdsid_YP_005087321.1	HHsearch (proba=100.00%)
Portal	68	lcl\|NC_016655.1_cdsid_YP_005087320.1	HHsearch (proba=100.00%)
TermL	66	lcl\|NC_016655.1_cdsid_YP_005087318.1	Blast (e-value=8e-47)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	70	lcl\|NC_016655.1_cdsid_YP_005087322.1	HHsearch (proba=99.73%)
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	79	lcl\|NC_016655.1_cdsid_YP_005087331.1	HHsearch (proba=92.43%)
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:8102 protein:vir:100247 protein:vir:485	Che9c Bcep176 P27	26 % 22 % 21 %
Portal	protein:vir:8100 protein:vir:1326 protein:vir:101648	Che9c phi-C31 244	42 % 18 % 18 %
TermL	protein:vir:99071 protein:vir:80678 protein:vir:8098	Wildcat PA6 Che9c	29 % 27 % 27 %
Ad1	protein:vir:80320 protein:vir:1435 protein:vir:81069	phi644-2 phiE125 Xop411	16 % 15 % 19 %
Hc2	protein:vir:104739 protein:vir:103005	P-SSM2 Syn9	8 % 15 %