Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : NBR1 | Genbank acc : NC_016569

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 68

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	8	lcl\|NC_016569.1_cdsid_YP_004957643.1	HHsearch (proba=100.00%)
Portal	5	lcl\|NC_016569.1_cdsid_YP_004957640.1	HHsearch (proba=100.00%)
TermL	3	lcl\|NC_016569.1_cdsid_YP_004957638.1	Blast (e-value=3e-65)
MTP	14	lcl\|NC_016569.1_cdsid_YP_004957649.1	Blast (e-value=3e-07)
Sheath	NOT FOUND
Ad1	10	lcl\|NC_016569.1_cdsid_YP_004957645.1	HHsearch (proba=100.00%)
Hc1	11	lcl\|NC_016569.1_cdsid_YP_004957646.1	HHsearch (proba=99.71%)
Ne1	NOT FOUND
Tc1	13	lcl\|NC_016569.1_cdsid_YP_004957648.1	HHsearch (proba=99.79%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:81227 protein:vir:101650 protein:vir:7855	BFK20 244 CJW1	37 % 29 % 29 %
Portal	protein:vir:81218 protein:vir:101648 protein:vir:7853	BFK20 244 CJW1	25 % 23 % 23 %
TermL	protein:vir:80335 protein:vir:4335 protein:vir:5736	phi644-2 D3 PY54	30 % 30 % 29 %
MTP	protein:vir:98437 protein:vir:99006 protein:vir:80670	VWB Wildcat PA6	25 % 23 % 20 %
Ad1	protein:vir:8104 protein:vir:81255 protein:vir:101652	Che9c BFK20 244	24 % 22 % 21 %
Hc1	protein:vir:81216 protein:vir:8105 protein:vir:8431	BFK20 Che9c Omega	31 % 25 % 20 %
Tc1	protein:vir:102609 protein:vir:105826 protein:vir:7994	Llij PMC Che8	22 % 22 % 22 %