Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PaV-LD | Genbank acc : NC_016564

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 142

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	73	lcl\|NC_016564.1_cdsid_YP_004957346.1	HHsearch (proba=100.00%)
Portal	57	lcl\|NC_016564.1_cdsid_YP_004957330.1	HHsearch (proba=100.00%)
TermL	53	lcl\|NC_016564.1_cdsid_YP_004957326.1	Blast (e-value=5e-92)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	75	lcl\|NC_016564.1_cdsid_YP_004957348.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	69	lcl\|NC_016564.1_cdsid_YP_004957342.1	HHsearch (proba=100.00%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Ad1	6	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79642 protein:vir:104342 protein:vir:103285	TLS RTP JK06	20 % 20 % 20 %
Portal	protein:vir:5249 protein:vir:104338 protein:vir:80040	Aaphi23 RTP B054	19 % 19 % 18 %
TermL	protein:vir:106508 protein:vir:95253 protein:vir:97250	phiAsp2 Felix 01 M6	23 % 21 % 18 %
Ad1	protein:vir:5256 protein:vir:78595 protein:vir:106739	Aaphi23 BcepNY3 Bcep1	23 % 22 % 22 %
Ne1	protein:vir:99833 protein:vir:103841 protein:vir:79225	B3 D3112 Phage MP22	28 % 26 % 24 %