BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_016564.1_cdsid_YP_004957326.1 [gene=PaVLD_ORF053L] [protein=terminase large subunit] [protein_id=YP_004957326.1] [location=complement(31517..33121)] (534 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|10218|lcl|protein:vir:107805 Length: 533 # NCBI annotation: h... 329 5e-92 gi|6515|lcl|protein:vir:98503 Length: 533 # NCBI annotation: hyp... 329 5e-92 gi|4516|lcl|protein:vir:107432 Length: 533 # NCBI annotation: Bb... 329 5e-92 gi|10609|lcl|protein:vir:106508 Length: 492 # NCBI annotation: P... 99 1e-22 gi|16077|lcl|protein:vir:4155 Length: 468 # NCBI annotation: lar... 70 5e-14 gi|18252|lcl|protein:vir:4193 Length: 467 # NCBI annotation: put... 66 1e-12 gi|5427|lcl|protein:vir:95253 Length: 533 # NCBI annotation: Ter... 51 3e-08 gi|4548|lcl|protein:vir:94970 Length: 473 # NCBI annotation: put... 48 2e-07 gi|9590|lcl|protein:vir:97250 Length: 515 # NCBI annotation: hyp... 45 2e-06 gi|5525|lcl|protein:vir:95311 Length: 491 # NCBI annotation: put... 44 3e-06 gi|16210|lcl|protein:vir:7319 Length: 491 # NCBI annotation: ter... 44 4e-06 gi|8997|lcl|protein:vir:101640 Length: 432 # NCBI annotation: te... 44 6e-06 gi|12899|lcl|protein:vir:80432 Length: 510 # NCBI annotation: Bc... 41 3e-05 gi|5072|lcl|protein:vir:95130 Length: 531 # NCBI annotation: hyp... 37 6e-04 gi|14466|lcl|protein:vir:3519 Length: 469 # NCBI annotation: P18... 35 0.002 gi|3859|lcl|protein:vir:107748 Length: 532 # NCBI annotation: gp... 35 0.003 gi|6775|lcl|protein:vir:96067 Length: 460 # NCBI annotation: con... 29 0.17 gi|18273|lcl|protein:vir:7986 Length: 545 # NCBI annotation: gp2... 25 2.8 gi|9695|lcl|protein:vir:102601 Length: 545 # NCBI annotation: gp... 25 2.9 gi|8440|lcl|protein:vir:105818 Length: 545 # NCBI annotation: gp... 25 2.9 gi|10658|lcl|protein:vir:268 Length: 605 # NCBI annotation: puta... 24 4.8 gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA... 23 6.5 gi|17761|lcl|protein:vir:171 Length: 470 # NCBI annotation: term... 23 6.6 >gi|10218|lcl|protein:vir:107805 Length: 533 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:144 # MgeID: mge:1673 # MgeName: BIP-1 # Cross-refs: genbank:acc:NP_996635;genbank:gi:45580769;genbank:GeneID :2767881 Length = 533 Score = 329 bits (843), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 202/504 (40%), Positives = 280/504 (55%), Gaps = 23/504 (4%) Query: 23 IANWNPWEPKSEPQRMALSSHADIIGFGGSAGGGKTAIIQIMAVTQHRKSIVFRREYPRL 82 +A PW P PQ A +S ADIIG+GG+AGGGKT +I + +T+H ++++ RRE + Sbjct: 26 LATAPPWLPLPGPQTAAYNSDADIIGYGGAAGGGKTDLIAGLTLTKHERALIVRREKAQT 85 Query: 83 LDIIEKSRLLLRGSGATYNSNEKLWRKIPGGRTLKFGAAQHESDIENWRGIEHDLKAVDE 142 +++ ++ G+ YNS + WR +PGGR + + D W+G HDLKA DE Sbjct: 86 EGFVQRMTEIMGGTDG-YNSQKGFWR-LPGGRLCELAGLDNPGDERRWQGRPHDLKAFDE 143 Query: 143 VTEFSLEQFLFLTGWCRSPDPHQKCRVIFTFNPPSQVSGRWIIGYLAPWLDPKYESQTGR 202 VTE +Q F+ GW R+ P Q+ RV+ TFNPP+ GRW+I + APWLD K+ Sbjct: 144 VTEQREQQVRFVMGWNRTNKPGQRSRVLMTFNPPTTSEGRWVIDFFAPWLDKKHP----L 199 Query: 203 HLAEPGELRWFVGV---NGKDQEVDVDSFYLTIGKEIHEVSSLDPVKVEGKLYYPKPKKI 259 + PG LRW + NG ++ DS + + +SS V V G++ Y Sbjct: 200 YPTAPGALRWVAMLPDGNGGSRDTWFDS-------DGNPLSSAPFVLVGGRVEYDFDPAD 252 Query: 260 RIGDEDLEPRSRTFIRATLDDNPFLKDSGYRGVLQSLPEPLRSQLLYGDMTIEPESDPYQ 319 ++ ++P+SRTFI A + DNP+ DSGY LQSLPEPLRSQ+LYGD E DP+Q Sbjct: 253 YNPEDIIQPKSRTFIPARVTDNPYYVDSGYLVTLQSLPEPLRSQMLYGDFNAGIEDDPWQ 312 Query: 320 VIPGDWVTLAMQRWVDYPQTLKMSHIGVDVARGGIDKTVLALRWDNWLDRLREFDGNQTP 379 VIP WV A RW + M +GVDVARGG D T+LA R W D + G TP Sbjct: 313 VIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRDNTILARRHAMWFDVPLTYPGKDTP 372 Query: 380 DSNIVAQQIASCMANTGVKVQIDVIGVGAAVHDTCRGMKMHVIPLKGSEAAKDGNGEYLK 439 D VA + + + V + +DVIGVGA+ +D K V+ + +EAA+ Sbjct: 373 DGPTVAGLAIAALRDHAV-IHLDVIGVGASPYDFLAQAKQQVVGVNVAEAARG------T 425 Query: 440 DKSGLLTFANMRTYWYWNLRDLLDPKNQIPICLPPDDQLKEELCAFRWWESGKTIMITKK 499 DKSG L F N+R+ +W +R+ LDP N I LPPD +L +L A W SG T+ + + Sbjct: 426 DKSGRLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLADLTAPTWSLSGATLKVASR 485 Query: 500 DDIKSIIGRSPNLADAVCYAFAKT 523 +DI IGRSP+ A A T Sbjct: 486 EDIIEKIGRSPDFGSAYVLALMDT 509 >gi|6515|lcl|protein:vir:98503 Length: 533 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:144 # MgeID: mge:1592 # MgeName: BMP-1 # Cross-refs: genbank:acc:NP_996587;genbank:gi:45569518;genbank:GeneID :2767831 Length = 533 Score = 329 bits (843), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 202/504 (40%), Positives = 280/504 (55%), Gaps = 23/504 (4%) Query: 23 IANWNPWEPKSEPQRMALSSHADIIGFGGSAGGGKTAIIQIMAVTQHRKSIVFRREYPRL 82 +A PW P PQ A +S ADIIG+GG+AGGGKT +I + +T+H ++++ RRE + Sbjct: 26 LATAPPWLPLPGPQTAAYNSDADIIGYGGAAGGGKTDLIAGLTLTKHERALIVRREKAQT 85 Query: 83 LDIIEKSRLLLRGSGATYNSNEKLWRKIPGGRTLKFGAAQHESDIENWRGIEHDLKAVDE 142 +++ ++ G+ YNS + WR +PGGR + + D W+G HDLKA DE Sbjct: 86 EGFVQRMTEIMGGTDG-YNSQKGFWR-LPGGRLCELAGLDNPGDERRWQGRPHDLKAFDE 143 Query: 143 VTEFSLEQFLFLTGWCRSPDPHQKCRVIFTFNPPSQVSGRWIIGYLAPWLDPKYESQTGR 202 VTE +Q F+ GW R+ P Q+ RV+ TFNPP+ GRW+I + APWLD K+ Sbjct: 144 VTEQREQQVRFVMGWNRTNKPGQRSRVLMTFNPPTTSEGRWVIDFFAPWLDKKHP----L 199 Query: 203 HLAEPGELRWFVGV---NGKDQEVDVDSFYLTIGKEIHEVSSLDPVKVEGKLYYPKPKKI 259 + PG LRW + NG ++ DS + + +SS V V G++ Y Sbjct: 200 YPTAPGALRWVAMLPDGNGGSRDTWFDS-------DGNPLSSAPFVLVGGRVEYDFDPAD 252 Query: 260 RIGDEDLEPRSRTFIRATLDDNPFLKDSGYRGVLQSLPEPLRSQLLYGDMTIEPESDPYQ 319 ++ ++P+SRTFI A + DNP+ DSGY LQSLPEPLRSQ+LYGD E DP+Q Sbjct: 253 YNPEDIIQPKSRTFIPARVTDNPYYVDSGYLVTLQSLPEPLRSQMLYGDFNAGIEDDPWQ 312 Query: 320 VIPGDWVTLAMQRWVDYPQTLKMSHIGVDVARGGIDKTVLALRWDNWLDRLREFDGNQTP 379 VIP WV A RW + M +GVDVARGG D T+LA R W D + G TP Sbjct: 313 VIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRDNTILARRHAMWFDVPLTYPGKDTP 372 Query: 380 DSNIVAQQIASCMANTGVKVQIDVIGVGAAVHDTCRGMKMHVIPLKGSEAAKDGNGEYLK 439 D VA + + + V + +DVIGVGA+ +D K V+ + +EAA+ Sbjct: 373 DGPTVAGLAIAALRDHAV-IHLDVIGVGASPYDFLAQAKQQVVGVNVAEAARG------T 425 Query: 440 DKSGLLTFANMRTYWYWNLRDLLDPKNQIPICLPPDDQLKEELCAFRWWESGKTIMITKK 499 DKSG L F N+R+ +W +R+ LDP N I LPPD +L +L A W SG T+ + + Sbjct: 426 DKSGRLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLADLTAPTWSLSGATLKVASR 485 Query: 500 DDIKSIIGRSPNLADAVCYAFAKT 523 +DI IGRSP+ A A T Sbjct: 486 EDIIEKIGRSPDFGSAYVLALMDT 509 >gi|4516|lcl|protein:vir:107432 Length: 533 # NCBI annotation: Bbp25 # Family: family:all:144 # MgeID: mge:1537 # MgeName: BPP-1 # Cross-refs: genbank:acc:NP_958694;genbank:gi:41179386;genbank:GeneID :2717226 Length = 533 Score = 329 bits (843), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 202/504 (40%), Positives = 280/504 (55%), Gaps = 23/504 (4%) Query: 23 IANWNPWEPKSEPQRMALSSHADIIGFGGSAGGGKTAIIQIMAVTQHRKSIVFRREYPRL 82 +A PW P PQ A +S ADIIG+GG+AGGGKT +I + +T+H ++++ RRE + Sbjct: 26 LATAPPWLPLPGPQTAAYNSDADIIGYGGAAGGGKTDLIAGLTLTKHERALIVRREKAQT 85 Query: 83 LDIIEKSRLLLRGSGATYNSNEKLWRKIPGGRTLKFGAAQHESDIENWRGIEHDLKAVDE 142 +++ ++ G+ YNS + WR +PGGR + + D W+G HDLKA DE Sbjct: 86 EGFVQRMTEIMGGTDG-YNSQKGFWR-LPGGRLCELAGLDNPGDERRWQGRPHDLKAFDE 143 Query: 143 VTEFSLEQFLFLTGWCRSPDPHQKCRVIFTFNPPSQVSGRWIIGYLAPWLDPKYESQTGR 202 VTE +Q F+ GW R+ P Q+ RV+ TFNPP+ GRW+I + APWLD K+ Sbjct: 144 VTEQREQQVRFVMGWNRTNKPGQRSRVLMTFNPPTTSEGRWVIDFFAPWLDKKHP----L 199 Query: 203 HLAEPGELRWFVGV---NGKDQEVDVDSFYLTIGKEIHEVSSLDPVKVEGKLYYPKPKKI 259 + PG LRW + NG ++ DS + + +SS V V G++ Y Sbjct: 200 YPTAPGALRWVAMLPDGNGGSRDTWFDS-------DGNPLSSAPFVLVGGRVEYDFDPAD 252 Query: 260 RIGDEDLEPRSRTFIRATLDDNPFLKDSGYRGVLQSLPEPLRSQLLYGDMTIEPESDPYQ 319 ++ ++P+SRTFI A + DNP+ DSGY LQSLPEPLRSQ+LYGD E DP+Q Sbjct: 253 YNPEDIIQPKSRTFIPARVTDNPYYVDSGYLVTLQSLPEPLRSQMLYGDFNAGIEDDPWQ 312 Query: 320 VIPGDWVTLAMQRWVDYPQTLKMSHIGVDVARGGIDKTVLALRWDNWLDRLREFDGNQTP 379 VIP WV A RW + M +GVDVARGG D T+LA R W D + G TP Sbjct: 313 VIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRDNTILARRHAMWFDVPLTYPGKDTP 372 Query: 380 DSNIVAQQIASCMANTGVKVQIDVIGVGAAVHDTCRGMKMHVIPLKGSEAAKDGNGEYLK 439 D VA + + + V + +DVIGVGA+ +D K V+ + +EAA+ Sbjct: 373 DGPTVAGLAIAALRDHAV-IHLDVIGVGASPYDFLAQAKQQVVGVNVAEAARG------T 425 Query: 440 DKSGLLTFANMRTYWYWNLRDLLDPKNQIPICLPPDDQLKEELCAFRWWESGKTIMITKK 499 DKSG L F N+R+ +W +R+ LDP N I LPPD +L +L A W SG T+ + + Sbjct: 426 DKSGRLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLADLTAPTWSLSGATLKVASR 485 Query: 500 DDIKSIIGRSPNLADAVCYAFAKT 523 +DI IGRSP+ A A T Sbjct: 486 EDIIEKIGRSPDFGSAYVLALMDT 509 >gi|10609|lcl|protein:vir:106508 Length: 492 # NCBI annotation: Pas60 # Family: family:all:144 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024846;genbank:gi:48697461;genbank:GeneID :2846165 Length = 492 Score = 99.0 bits (245), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/214 (34%), Positives = 105/214 (49%), Gaps = 23/214 (10%) Query: 315 SDPYQVIPGDWVTLAMQRWVDYPQTLKMSH-----IGVDVARGGIDKTVLALRWDNWLDR 369 SD VIP W+ A++RW ++ + + S GVDV RGG D+TVLA R D W Sbjct: 265 SDEDSVIPLAWLEAAIERWHEWDRQGRPSPGGPLWTGVDVGRGG-DETVLAAR-DGWAVT 322 Query: 370 LREFDGNQTPDSNIVAQQIASCMANTGVKVQIDVIGVGAAVHDTCRGMKMHVIPLKGSEA 429 L + N+ D+ + A G + IDVIG+GA V D R + + GS Sbjct: 323 L---ETNRRRDT---MATVGLIQAREGRAI-IDVIGLGAGVFDRLRELGTRPLAYTGSA- 374 Query: 430 AKDGNGEYLKDKSGLLTFANMRTYWYWNLRDLLDPKNQIPICLPPDDQLKEELCAFRWWE 489 G ++D+SG F N R+ YWNLR+LLDP + LPPDD + +L W Sbjct: 375 -----GATVRDRSGKFGFTNTRSAAYWNLRELLDPAFDPVLALPPDDLMISDLTTPHWEV 429 Query: 490 SGKT---IMITKKDDIKSIIGRSPNLADAVCYAF 520 + I + KD + +GRSP+ DA+ + Sbjct: 430 TTGVPPKIKVEPKDKVVERLGRSPDRGDAIAMSL 463 >gi|16077|lcl|protein:vir:4155 Length: 468 # NCBI annotation: large terminase subunit # Family: family:all:144 # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046964;genbank:gi:9630534;genbank:GeneID: 1261708 Length = 468 Score = 70.1 bits (170), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 12/170 (7%) Query: 15 KLGFTGQSIANWNPWEPKSEPQRMALSSHADIIGFGGSAGGGKTAIIQIMAVTQH----- 69 KL ++ + + P P + + LS +++ +GG+AGGGK+ + +M Q+ Sbjct: 43 KLFYSTIILNPYIPVNPFHKQIKFLLSDEREVL-YGGAAGGGKSVAL-LMGALQYVHYSD 100 Query: 70 RKSIVFRREYPRLLD---IIEKSRLLLRGSGATYNSNEKLWRKIPGGRTLKFGAAQHESD 126 +++ RR YP L +I+ + L G+ A +N +K W P G L+FG +HE D Sbjct: 101 YAALILRRTYPELSQEGGLIDMANDWLGGTDAEWNEQKKRW-TFPSGAALQFGHMEHEKD 159 Query: 127 IENWRGIEHDLKAVDEVTEFSLEQFLFLTGWCRSP-DPHQKCRVIFTFNP 175 ++G + A DE+TEF Q+ F+ R + H RV T NP Sbjct: 160 RYRYQGSSYHYIAFDELTEFMETQYRFMFRSLRKEVNDHIPLRVRATSNP 209 Score = 28.1 bits (61), Expect = 0.30, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 19/38 (50%) Query: 271 RTFIRATLDDNPFLKDSGYRGVLQSLPEPLRSQLLYGD 308 +TFI +T +NP+L Y L L R QL GD Sbjct: 226 KTFIPSTWRENPYLNRDEYEEALNMLDHVTRRQLKDGD 263 >gi|18252|lcl|protein:vir:4193 Length: 467 # NCBI annotation: putative large terminase subunit # Family: family:all:144 # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071818;genbank:gi:11863101;genbank:GeneID :1257603 Length = 467 Score = 66.2 bits (160), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 11/148 (7%) Query: 15 KLGFTGQSIANWNPWEPKSEPQRMALSSHADIIGFGGSAGGGKTAIIQIMAVTQH----- 69 KL ++ + + P P + + LS +++ +GG+AGGGK+ + +M Q+ Sbjct: 43 KLFYSTIILNPYIPVNPFHKQIKFLLSDEREVL-YGGAAGGGKSVAL-LMGALQYVHYSD 100 Query: 70 RKSIVFRREYPRLLD---IIEKSRLLLRGSGATYNSNEKLWRKIPGGRTLKFGAAQHESD 126 +++ RR YP L +I+ + L G+ A +N +K W P G L+FG +HE D Sbjct: 101 YAALILRRTYPELSQEGGLIDMANDWLGGTDAEWNEQKKRW-TFPSGAALQFGHMEHEKD 159 Query: 127 IENWRGIEHDLKAVDEVTEFSLEQFLFL 154 ++G + A DE+TEF Q+ F+ Sbjct: 160 RYRYQGSSYHYIAFDELTEFLESQYRFM 187 Score = 28.5 bits (62), Expect = 0.23, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 19/38 (50%) Query: 271 RTFIRATLDDNPFLKDSGYRGVLQSLPEPLRSQLLYGD 308 +TFI +T +NP+L Y L L R QL GD Sbjct: 226 KTFIPSTWRENPYLNRDEYEEALNMLDHVTRRQLKEGD 263 >gi|5427|lcl|protein:vir:95253 Length: 533 # NCBI annotation: Terminase, large subunit # Family: family:all:144 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944884;genbank:gi:38707825;genbank:GeneID :2744038 Length = 533 Score = 51.2 bits (121), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 73/314 (23%), Positives = 131/314 (41%), Gaps = 50/314 (15%) Query: 14 DKLGFTGQSIANWNPWEPKSEPQRMALSSHADIIGFGGSAGGGKTAIIQIMAV----TQH 69 D++ + + + N P+ Q + L+++AD++ +GG+AG GKTA + + ++ + Sbjct: 56 DQVRLIFKLMTDKNYVAPQPGSQEVFLNTNADLVLYGGAAGAGKTAALLMDSLRFIEDPN 115 Query: 70 RKSIVFRREYPRLLDIIEKSRLLLRGSGATYNSNEKLWRKIPGGRTLKFGAAQHESDIEN 129 ++ FRR +L + + L G +K+ P G T+KF + E E Sbjct: 116 YNAVYFRRNTTQLQGGLWPAAKKLFGKFGGIPHEQKMTITFPSGATIKFTYLELEKHAEG 175 Query: 130 WRGIEHDLKAVDEVTEFSLEQFLFLTGWCRSPDPHQKCRVIFTFNPPSQVSGRWIIGYLA 189 +GIE+ DE T FS Q +L RS + + NP ++ Sbjct: 176 HQGIEYSAIYFDEGTHFSASQISYLQTRLRS-GAEGDSYMKISMNPDRD-------HFIY 227 Query: 190 PWLDPKYESQTGRHLAEPGELRWFV---GVNGKDQEVDVDSFYLTIGKEIHEVSSLDPVK 246 W++P + + + G +RW+V GV D E D ++ + P++ Sbjct: 228 DWVEPFLDEEGYPDPEKCGRIRWYVMNDGVMVSDWERD-------------KILEMFPLE 274 Query: 247 VEGKLYYPKPKKIRIGDEDLEPRSRTFIRATLDDNPFLK--DSGYRGVLQSLPEPLRSQL 304 + P++ TFI T+DDNP L + YRG L++ ++L Sbjct: 275 I--------------------PQTYTFISGTIDDNPILDFLEPKYRGKLENNTPVNVARL 314 Query: 305 LYGDMTIEPESDPY 318 +G+ E Y Sbjct: 315 RFGNWKARAEGSNY 328 >gi|4548|lcl|protein:vir:94970 Length: 473 # NCBI annotation: putative phage terminase large subunit # Family: family:all:144 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239275;genbank:gi:66392134;genbank:GeneID :5076615 Length = 473 Score = 48.1 bits (113), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 21/161 (13%) Query: 35 PQRMALSSHADIIGFGGSAGGGKTAIIQIMAVTQHRK-----SIVFRREYPRLLD----- 84 PQ+ AL + A I +GG+AGGGK+ ++++ ++ + + +FRR + +L Sbjct: 10 PQQRALITPAREILYGGAAGGGKSYLLRVASIVYSLEIPGLITYLFRRTFKEVLSNHVYT 69 Query: 85 ---IIEKSRLLLRGSGATYNSNEKLWRKIPGGRTLKFGAAQHESDIENWRGIEHDLKAVD 141 +E + L+ Y+ ++ + G R ++ +Q E+DI +G + +D Sbjct: 70 PGGYLEMMKGLIDAGDVVYSKSDNSFTFYNGSR-IQLAHSQFENDIYTHQGAQIGFLIID 128 Query: 142 EVTEFSLEQFLFLTGWCRSPD----PHQKC---RVIFTFNP 175 E T F+ F+ R P K R+++T NP Sbjct: 129 EATHFTPPMIRFIRSRVRLGSMIIPPKWKALFPRILYTANP 169 >gi|9590|lcl|protein:vir:97250 Length: 515 # NCBI annotation: hypothetical protein ORF012 # Family: family:all:144 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294520;genbank:gi:149408241;genbank:Ge neID:5237115 Length = 515 Score = 45.1 bits (105), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 14/159 (8%) Query: 29 WEPKSEPQRMALSSHADI-IGFGGSAGGGKTAIIQIMAVTQHR--------KSIVFRREY 79 W P+ Q L +H + + G+ G GKT + +M QH + I+FR+ Y Sbjct: 48 WCPQYGSQLAFLMAHPIFEVLYEGTRGPGKTDCL-LMDFLQHVGKGYGSEWRGILFRQTY 106 Query: 80 PRLLDIIEKSRLLLRG--SGATYNSNEKLWRKIPGGRTLKFGAAQHESDIENWRGIEHDL 137 P+L D+I K+ + GA YN E W P G L + D N+ G + Sbjct: 107 PQLSDVINKTNKWFKRIFPGAKYNKVEHKW-TFPDGEELLLRHMKSPEDYWNYHGHAYPW 165 Query: 138 KAVDEVTEFSLEQ-FLFLTGWCRSPDPHQKCRVIFTFNP 175 +E+ ++ ++ + + CRS P T NP Sbjct: 166 IGWEELCNWADDKCYTVMMSCCRSTKPGMPRCYRATTNP 204 >gi|5525|lcl|protein:vir:95311 Length: 491 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512256;genbank:gi:89152423;genbank:GeneID :3952979 Length = 491 Score = 44.3 bits (103), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 88/214 (41%), Gaps = 23/214 (10%) Query: 311 IEPESDPYQVIPGDWVTLAMQRWVDYPQTLKMSHI-GVDVARGGIDKTVLALRWDNWLDR 369 I P++ Q IP AM+R V Q I GVD A G+D V+ LR L Sbjct: 271 IFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLR--QGLHS 328 Query: 370 LREFDGNQTPDSNIVAQQIASCMANTGVKVQIDVIGVGAAVHDTCRG--MKMHVIPLKGS 427 + GN+T D I+A++IA G G + G ++P G+ Sbjct: 329 KVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSIGDGWGRTWQLVPFGGA 388 Query: 428 EAAKDGNGEYLKDKSGLLTFANMRTYWYWNLRDLLDPKNQIPICLPPDDQLKEELCAFRW 487 + +K G + F + +T+ L +LD + DD E ++ Sbjct: 389 STDPQ-----MLNKRGEM-FNSCKTWL--RLGGMLDDQET------ADDLSTAE---YKV 431 Query: 488 WESGKTIMITKKDDIKSIIGRSPNLADAVCYAFA 521 GK I+I K+DIK +GRSP DA+ FA Sbjct: 432 RVDGK-IVIEPKEDIKERLGRSPGKGDALLLTFA 464 >gi|16210|lcl|protein:vir:7319 Length: 491 # NCBI annotation: terminase large subunit # Family: family:all:144 # MgeID: mge:143 # MgeName: epsilon15 # Cross-refs: genbank:acc:NP_848210;genbank:gi:30387381;genbank:GeneID :2641874 Length = 491 Score = 43.9 bits (102), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 88/216 (40%), Gaps = 27/216 (12%) Query: 311 IEPESDPYQVIPGDWVTLAMQRWVDYPQTLKMSHI-GVDVARGGIDKTVLALRWDNWLDR 369 I P++ Q IP AM+R V Q I GVD A G+D V+ LR L Sbjct: 271 IFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLR--QGLHS 328 Query: 370 LREFDGNQTPDSNIVAQQIASCMANTGVKVQIDVIGVGAAVHDTCRG--MKMHVIPLKGS 427 + GN+T D I+A++IA G G + G +IP G Sbjct: 329 KVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSIGDGWGRTWQLIPFGGG 388 Query: 428 EAAKDGNGEYLKDKSGLLTFANMRTYWYWNLRDLLDPKNQIPICLPPDDQLKEELCA--F 485 + +K G + F + +T+ L LD D + ++L A + Sbjct: 389 S-----TDPQMLNKRGEM-FNSCKTWL--KLGGALD-----------DQETADDLSAAEY 429 Query: 486 RWWESGKTIMITKKDDIKSIIGRSPNLADAVCYAFA 521 + GK I+I K+DIK +GRSP DA+ FA Sbjct: 430 KVRVDGK-IVIEPKEDIKERLGRSPGKGDALLLTFA 464 >gi|8997|lcl|protein:vir:101640 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:144 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112491;genbank:gi:53793591;uniprot:Q5ZGG2 ;genbank:GeneID:3101748 Length = 432 Score = 43.5 bits (101), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/251 (23%), Positives = 113/251 (45%), Gaps = 24/251 (9%) Query: 271 RTFIRATLDDNPFLKDSGYRGVLQSLPEPLRSQLLYGDMTIEPESDPYQVIPGDWV-TLA 329 + FI+A DNP L S Y L SL E + +L YG+ E ++DP ++I + + Sbjct: 186 KKFIQALPTDNPHLPAS-YLTSLLSLDENSKQRLYYGNW--EYDNDPAKLIDYEKIQNCF 242 Query: 330 MQRWVDYPQTLKMSHIGVDVARGGIDKTVLALRWDNWLDRLREFDGNQTPDSNIVAQQIA 389 ++ + + +I D+AR G DK V+ + W + R + S+I +IA Sbjct: 243 TNTFIPFGEM----YISADIARFGSDKMVICV-WSGF----RVVEIFSMAKSSIT--EIA 291 Query: 390 SCMANTGVKVQIDVIGVGAAVHDTCRGMKMHVIPLKGSEAAKDGNGEYLKDKSGLLTFAN 449 + +K ++ + V + D V L + N ++ + ++ + N Sbjct: 292 EAVRGLSIKHKVPLSNV---ICDEDGVGGGVVDVLGCTGFI--NNSRAMEVDNQVVQYQN 346 Query: 450 MRTYWYWNLRDLLDPKNQIPIC--LPPDDQLKEELCAFRW--WESGKTIMITKKDDIKSI 505 ++T Y+ L +++ N +D++ +EL + +S + + KD +K Sbjct: 347 LKTQCYYKLAEVIQSNNLYIHSEDATVNDEITKELEQVKRDKIDSDGKLQLISKDKVKQA 406 Query: 506 IGRSPNLADAV 516 IGRSP+ +DA+ Sbjct: 407 IGRSPDYSDAL 417 >gi|12899|lcl|protein:vir:80432 Length: 510 # NCBI annotation: BcepGomrgp04 # Family: family:all:144 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210224;genbank:gi:146329916;genbank:Ge neID:5123541 Length = 510 Score = 41.2 bits (95), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 12/129 (9%) Query: 29 WEPKSEPQRMALSSHADIIGFGGSAGGGKTAIIQIMAVTQHR--------KSIVFRREYP 80 W+P Q A++ + + G+ G GKT Q+M ++ + I+F REY Sbjct: 13 WQPLPGSQTAAITYPGHHLLYEGTRGPGKTDA-QLMKFRRYVGLGYGRFWRGIIFDREYK 71 Query: 81 RLLDIIEKSR--LLLRGSGATYNSNEKLWRKI-PGGRTLKFGAAQHESDIENWRGIEHDL 137 L D++ KS+ L GA + +++ +R + P G L F + +D N+ G E Sbjct: 72 NLDDLVSKSQRWFPLFEDGAKFKASKSDYRWVWPTGEELLFRQIKKSTDYWNYHGQEFPF 131 Query: 138 KAVDEVTEF 146 +E++++ Sbjct: 132 IGWNELSKY 140 >gi|5072|lcl|protein:vir:95130 Length: 531 # NCBI annotation: hypothetical protein ORF006 # Family: family:all:144 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293413;genbank:gi:148912834;genbank:Ge neID:5228205 Length = 531 Score = 37.0 bits (84), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 71/304 (23%), Positives = 120/304 (39%), Gaps = 64/304 (21%) Query: 29 WEPKSEPQRMALSSHADIIGFGGSAGGGKTAIIQIMAVTQHR--------KSIVFRREYP 80 ++P Q +AL S A + G+ G GKT + Q+M ++ + ++F E+ Sbjct: 20 FKPLPGSQTIALCSMAAHTLYEGARGPGKT-LTQLMRFYRNVGKGYGKFWRGVIFDLEFD 78 Query: 81 RLLDIIEKSRLL------LRGSGATYNSNEKLWRKIPGGRTLKFGAAQHESDIENWRGIE 134 L ++ +S+ L+ G Y S P G L F + SD E + G E Sbjct: 79 HLGGLVAESKKWFGDNGKLKDGGKFYESTSAYKWVWPTGEELLFRHVKKLSDYEGFHGHE 138 Query: 135 HDLKAVDEVTEFS----LEQFLFLTGWCRSPDPHQKCRVIFTFNPPSQV-----SGRWII 185 + +E+T+ ++F+ + +C TF+P +GR++ Sbjct: 139 YPFIGWNELTKHPSGDLYDKFMSV----------NRC----TFDPIKDTPKDPKTGRYLT 184 Query: 186 GYLAPWLDPKYESQTGRHLAEPGELRWFVGVNGKDQEVDVDSFYLTIGKEIHEVSSLDPV 245 P K E + + + PG W V ++TI V Sbjct: 185 PNGEPLPPVKCEVFSTTNPSGPGH-NW------------VKRRFITIAPR------GTVV 225 Query: 246 KVEGKLYYPKPKKIRIGDEDLEPRSRTFIRATLDDNPFLKDSGYRGVLQSLPEP-LRSQL 304 + E ++Y P +K E+ S+ I + +NP+L S Y L+S+ EP LR Sbjct: 226 RREIQIYNPATEK-----EETHVISQIAIFGSYKENPYLPAS-YIAELESIKEPNLRKAW 279 Query: 305 LYGD 308 LYGD Sbjct: 280 LYGD 283 >gi|14466|lcl|protein:vir:3519 Length: 469 # NCBI annotation: P18 # Family: family:all:54 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050979;genbank:gi:9633565;genbank:GeneID: 1262312 Length = 469 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 96/257 (37%), Gaps = 51/257 (19%) Query: 306 YGDMTIEPESDPYQVIPGDWVTLAMQRWVDY---PQTLKMSHIGVDVARGGIDKTVLALR 362 Y D I+PE WV A+ + P +++ + D A G D+ L+ R Sbjct: 211 YEDALIQPE----------WVEAAIDAHIKLGFKPSGIRV--VTFDPADSGQDEKALSKR 258 Query: 363 WDNWLDRLREFDGNQTPDSNIVAQQIASCMANTGVKVQIDVIGVGAA-----VHDTCRGM 417 + ++ + D+ + A D IG+GA + + G Sbjct: 259 YGVLIEDCVSWSEGDVADATMTA--FDDAFDYRADDFIYDNIGLGAGTVKTHLRHSNDGN 316 Query: 418 KMHVI-------PLKGSEAAKDGNGEYL-----KDKSGLLTFANMRTYWYWNLRD----- 460 KM V P E GNGEYL D++ TF N R ++ L D Sbjct: 317 KMVVTGFGAGDSPDYPDEIYVPGNGEYLPSSNNDDRTHRDTFRNKRAQYWVYLADRFYKT 376 Query: 461 --------LLDPKNQIPIC--LPPDDQLKEELCAFRWWES--GKTIMITKKDDIKSIIGR 508 LDP I + + QLK EL + + + I + KD+++ + Sbjct: 377 WRAVEKGEYLDPDALISLSSKIAKLSQLKSELIKQQRKRTPGNRLIQLMSKDEMRLKGIK 436 Query: 509 SPNLADAVCYAFAKTYR 525 SPN+AD + +FA R Sbjct: 437 SPNMADTLMMSFANPLR 453 >gi|3859|lcl|protein:vir:107748 Length: 532 # NCBI annotation: gp33 TerL # Family: family:all:54 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024878;genbank:gi:48697520;genbank:GeneID :2948367 Length = 532 Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust. Identities = 61/273 (22%), Positives = 97/273 (35%), Gaps = 39/273 (14%) Query: 280 DNPFLKDSGYRGVLQSLPEPLRSQLLYGDMTIEPESDPYQVIPGDWVTLAMQRWVDYPQT 339 D+P D Y+ Q + +Q + D + E +IP +W+ A+ V T Sbjct: 258 DDPRKDDEWYKKQKQKFNALVVAQEIDIDYSASAEG---VLIPLEWIDAAIDADVKLGLT 314 Query: 340 LKMSHIG-VDVARGGIDKTVLALRWDNWLDRLREFDGNQTPDSNIVAQQIASCMANTGVK 398 + +DVA G D R +D + G + + I +A G Sbjct: 315 VTGQRFSSLDVADEGKDMNAFGSRLGIRMDYAESWSGKGSNIYGTTLRTIGLVIAQNGRD 374 Query: 399 VQIDVIGVGAAVHDTCRGM----------KMHVIPLKGSEAAKDGNGEYLKDKSGLLT-- 446 Q D G+G V + K+ I +GS + ++ + + G+ Sbjct: 375 FQFDSDGLGVGVRGDAEAINALPERKAYPKIDAIAFRGSSSVREPDKQVPGAYKGVKNVD 434 Query: 447 -FANMRTYWYWNLRDLL-------------DPKNQIPIC--LPPDDQLKEELCA--FRWW 488 F N + YW LR DP I I +P +++ EL ++ Sbjct: 435 FFQNRKAQEYWALRMRFEATYRAVVEKLEYDPDEIISISSRIPDLQKIRMELHQPLYKPS 494 Query: 489 ESGKTIMITKKDDIKSIIGRSPNLADAVCYAFA 521 +GK IMI K D SPN AD +A Sbjct: 495 TTGK-IMIQKTPDGMV----SPNYADMTMMLYA 522 >gi|6775|lcl|protein:vir:96067 Length: 460 # NCBI annotation: conserved hypothetical protein ORF004 # Family: family:all:54 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294421;genbank:gi:149408318;genbank:Ge neID:5237186 Length = 460 Score = 28.9 bits (63), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 8/102 (7%) Query: 345 IGVDVARGGIDKTVLALRWDNWLDRLREFDGNQTPDSNIVAQQIASCMANTGVKVQIDVI 404 IG DVA G D L N + + E+DG + + + ++ + G V D I Sbjct: 242 IGFDVADDGEDANATTLMHGNVIMEVDEWDGLED-ELLKSSSRVYNLAKMKGASVTYDSI 300 Query: 405 GVGAAV-------HDTCRGMKMHVIPLKGSEAAKDGNGEYLK 439 GVGA V +D+ K+ P A + Y+K Sbjct: 301 GVGAHVGSKFAELNDSSPDFKLTYDPFNAGGAVDKPDDIYMK 342 >gi|18273|lcl|protein:vir:7986 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817340;genbank:gi:29565768;genbank:GeneID :1259002 Length = 545 Score = 24.6 bits (52), Expect = 2.8, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 109 KIPGGRTLKFGAAQHESDIENWRGIEHDLKA--VDEVTEFSL 148 +I GR + G + ++E W EH++ A VD ++ F + Sbjct: 368 EIATGRQMLLGCWERPENVEEWEVPEHEVTALVVDMMSRFEV 409 >gi|9695|lcl|protein:vir:102601 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654998;genbank:gi:109392188;genbank:GeneI D:4157223 Length = 545 Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 109 KIPGGRTLKFGAAQHESDIENWRGIEHDLKA--VDEVTEFSL 148 +I GR + G + ++E W EH++ A VD ++ F + Sbjct: 368 EIATGRQMLLGCWERPENVEEWEVPEHEVTALVVDMMSRFEV 409 >gi|8440|lcl|protein:vir:105818 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655763;genbank:gi:109522086;genbank:GeneI D:4157626 Length = 545 Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 109 KIPGGRTLKFGAAQHESDIENWRGIEHDLKA--VDEVTEFSL 148 +I GR + G + ++E W EH++ A VD ++ F + Sbjct: 368 EIATGRQMLLGCWERPENVEEWEVPEHEVTALVVDMMSRFEV 409 >gi|10658|lcl|protein:vir:268 Length: 605 # NCBI annotation: putative terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536648;genbank:gi:17975126;genbank:GeneID :929082 Length = 605 Score = 23.9 bits (50), Expect = 4.8, Method: Compositional matrix adjust. Identities = 8/12 (66%), Positives = 10/12 (83%) Query: 401 IDVIGVGAAVHD 412 ID+ G+GA VHD Sbjct: 489 IDITGIGAGVHD 500 >gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA maturation protein # Family: family:all:697 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_042010;swissprot:sw:p03694;genbank:gi:962 7482;goa:P03694;uniprot:P03694;genbank:GeneID:1261062 Length = 586 Score = 23.5 bits (49), Expect = 6.5, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 14/63 (22%) Query: 84 DIIEKSRLLLRGSGATYNSNEKLW----------RKIPGGRTLKFGAAQHE----SDIEN 129 DII + + + AT + EKLW + +P R + G Q E ++E+ Sbjct: 155 DIIIADDVEIPSNSATMGAREKLWTLVQEFAALLKPLPSSRVIYLGTPQTEMTLYKELED 214 Query: 130 WRG 132 RG Sbjct: 215 NRG 217 >gi|17761|lcl|protein:vir:171 Length: 470 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112076;genbank:gi:13559866;genbank:GeneID :921009 Length = 470 Score = 23.5 bits (49), Expect = 6.6, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 41/163 (25%) Query: 405 GVGAAVH----DTCRGMKMHVIPLKGSEAAKDGNGEYLK----------DKSGLL--TFA 448 GVGA + + G K+ KGSE+ D + Y D + F Sbjct: 299 GVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADEVVQGDNVRTIGDVFR 358 Query: 449 NMRTYWYWNLRDLLDPKNQIPI---CLPPDDQLK-----------EELCA------FRWW 488 N R +Y+ L D L + + PDD L E+L A ++ Sbjct: 359 NKRAQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGENILEKLFAELTQIQRKFN 418 Query: 489 ESGKTIMITKKDDIKSIIGRSPNLADAV-----CYAFAKTYRE 526 +GK ++TK + + + SPNLADA+ C A A+ E Sbjct: 419 NNGKLELMTKVEMKQKLGIPSPNLADALMMCMHCPALAREETE 461 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.137 0.433 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 269,461 Number of Sequences: 514 Number of extensions: 13254 Number of successful extensions: 70 Number of sequences better than 100.0: 27 Number of HSP's better than 100.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 32 length of query: 534 length of database: 206,069 effective HSP length: 76 effective length of query: 458 effective length of database: 167,005 effective search space: 76488290 effective search space used: 76488290 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 39 (19.6 bits)