Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PVP-SE1 | Genbank acc : NC_016071

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 244

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	70	lcl\|NC_016071.1_cdsid_YP_004893877.1	HHsearch (proba=100.00%)
Portal	74	lcl\|NC_016071.1_cdsid_YP_004893881.1	HHsearch (proba=100.00%)
TermL	75	lcl\|NC_016071.1_cdsid_YP_004893882.1	Blast (e-value=6e-70)
MTP	NOT FOUND
Sheath	60	lcl\|NC_016071.1_cdsid_YP_004893867.1	HHsearch (proba=100.00%)
Ad1	64	lcl\|NC_016071.1_cdsid_YP_004893871.1	HHsearch (proba=85.32%)
Hc1	62	lcl\|NC_016071.1_cdsid_YP_004893869.1	HHsearch (proba=96.01%)
Ne1	63	lcl\|NC_016071.1_cdsid_YP_004893870.1	HHsearch (proba=100.00%)
Tc1	61	lcl\|NC_016071.1_cdsid_YP_004893868.1	HHsearch (proba=95.03%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95258 protein:vir:10324 protein:vir:393	Felix 01 VHML N15	22 % 20 % 14 %
Portal	protein:vir:95254 protein:vir:108215 protein:vir:78161	Felix 01 Giles Min1	27 % 20 % 20 %
TermL	protein:vir:95253 protein:vir:94970 protein:vir:103223	Felix 01 Xp15 JK06	37 % 21 % 20 %
Sheath	protein:vir:95263 protein:vir:80052 protein:vir:78611	Felix 01 B054 BcepNY3	21 % 19 % 16 %
Ad1	protein:vir:9928	315.6	18 %
Hc1	protein:vir:5258 protein:vir:95261	Aaphi23 Felix 01	19 % 16 %
Ne1	protein:vir:96105 protein:vir:99546 protein:vir:78607	F8 BcepF1 BcepNY3	27 % 26 % 25 %
Tc1	protein:vir:95262 protein:vir:80105 protein:vir:3972	Felix 01 B054 ul36	18 % 18 % 15 %