Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : GTE2 | Genbank acc : NC_015720

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 57

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|NC_015720.1_cdsid_YP_004678776.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_015720.1_cdsid_YP_004678773.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_015720.1_cdsid_YP_004678772.1	Blast (e-value=1e-136)
MTP	11	lcl\|NC_015720.1_cdsid_YP_004678781.1	Blast (e-value=1e-23)
Sheath	NOT FOUND
Ad1	7	lcl\|NC_015720.1_cdsid_YP_004678777.1	HHsearch (proba=100.00%)
Hc1	8	lcl\|NC_015720.1_cdsid_YP_004678778.1	HHsearch (proba=100.00%)
Ne1	9	lcl\|NC_015720.1_cdsid_YP_004678779.1	HHsearch (proba=100.00%)
Tc1	10	lcl\|NC_015720.1_cdsid_YP_004678780.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:8187 protein:vir:78223 protein:vir:99920	Che9d Bethlehem Halo	33 % 29 % 29 %
Portal	protein:vir:80680 protein:vir:78537 protein:vir:78227	PA6 U2 Bethlehem	36 % 29 % 29 %
TermL	protein:vir:98470 protein:vir:2426 protein:vir:78494	VWB D29 U2	45 % 32 % 32 %
MTP	protein:vir:9580 protein:vir:1644 protein:vir:94739	SM1 r1t phi LC3	35 % 35 % 34 %
Ad1	protein:vir:99922 protein:vir:8189 protein:vir:80668	Halo Che9d PA6	41 % 36 % 33 %
Hc1	protein:vir:8190 protein:vir:2506 protein:vir:99923	Che9d TM4 Halo	33 % 23 % 22 %
Ne1	protein:vir:8192 protein:vir:94763 protein:vir:1642	Che9d phi LC3 r1t	36 % 32 % 32 %
Tc1	protein:vir:8193 protein:vir:98426 protein:vir:9764	Che9d VWB 315.3	30 % 22 % 23 %