Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : NCTC12673 | Genbank acc : NC_015464

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 166

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	71	lcl\|NC_015464.1_cdsid_YP_004421627.1	HHsearch (proba=100.00%)
Portal	75	lcl\|NC_015464.1_cdsid_YP_004421631.1	HHsearch (proba=100.00%)
TermL	NOT FOUND
MTP	35	lcl\|NC_015464.1_cdsid_YP_004421591.1	Blast (e-value=2e-22)
Sheath	58	lcl\|NC_015464.1_cdsid_YP_004421614.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	77	lcl\|NC_015464.1_cdsid_YP_004421633.1	HHsearch (proba=100.00%)
Hc2	119	lcl\|NC_015464.1_cdsid_YP_004421675.1	HHsearch (proba=100.00%)
Tc2	121	lcl\|NC_015464.1_cdsid_YP_004421677.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad2<->Hc2	42	2
Tc2<->Ad2	44	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103181 protein:vir:104915 protein:vir:104549	Syn9 P-SSM2 P-SSM4	33 % 31 % 31 %
Portal	protein:vir:5665 protein:vir:104500 protein:vir:106999	KVP40 P-SSM4 S-PM2	30 % 28 % 27 %
MTP	protein:vir:104771 protein:vir:106918 protein:vir:106171	P-SSM2 S-PM2 Aeh1	31 % 29 % 27 %
Sheath	protein:vir:6894 protein:vir:108052 protein:vir:103456	RB69 JS98 RB32	32 % 31 % 31 %
Ad2	protein:vir:107900 protein:vir:106428 protein:vir:106985	JS98 Aeh1 S-PM2	26 % 25 % 25 %
Hc2	protein:vir:106986 protein:vir:98258 protein:vir:104739	S-PM2 RB43 P-SSM2	23 % 22 % 22 %
Tc2	protein:vir:106402 protein:vir:81023 protein:vir:6591	Aeh1 Phi1 RB49	27 % 26 % 26 %