Query lcl|NC_015464.1_cdsid_YP_004421633.1 [gene=NCTC12673_gp080] [protein=gp13 neck protein] [protein_id=YP_004421633.1] [location=72136..72867] Match_columns 243 No_of_seqs 34 out of 42 Neff 5.1 Searched_HMMs 1612 Date Thu Nov 7 14:24:06 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_77 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_77_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:103451 Length: 309 100.0 2E-113 1E-116 638.3 21.3 237 1-243 6-309 (309) 2 protein:vir:104694 Length: 281 100.0 8E-113 5E-116 635.1 23.0 234 1-243 4-281 (281) 3 protein:vir:5657 Length: 307 # 100.0 6E-113 4E-116 635.7 20.9 235 1-243 6-307 (307) 4 protein:vir:7198 Length: 309 # 100.0 8E-113 5E-116 635.1 20.7 237 1-243 6-309 (309) 5 protein:vir:106428 Length: 306 100.0 4E-112 2E-115 631.3 23.9 237 1-243 7-306 (306) 6 protein:vir:107900 Length: 311 100.0 8E-113 5E-116 635.0 19.5 237 1-243 5-311 (311) 7 protein:vir:6889 Length: 308 # 100.0 2E-111 1E-114 627.5 21.7 237 1-243 6-308 (308) 8 protein:vir:98189 Length: 307 100.0 1E-110 8E-114 623.1 20.9 237 1-242 3-307 (307) 9 protein:vir:81013 Length: 310 100.0 1E-109 8E-113 617.4 22.7 236 1-242 6-310 (310) 10 protein:vir:6589 Length: 310 # 100.0 1E-109 8E-113 617.4 22.7 236 1-242 6-310 (310) 11 protein:vir:100534 Length: 314 100.0 8E-110 5E-113 618.7 20.3 237 1-243 5-314 (314) 12 protein:vir:101153 Length: 307 100.0 2E-109 2E-112 616.1 20.3 237 1-243 5-307 (307) 13 protein:vir:101857 Length: 307 100.0 2E-109 2E-112 616.1 20.3 237 1-243 5-307 (307) 14 protein:vir:106985 Length: 276 100.0 2E-106 1E-109 599.7 9.6 232 1-243 4-276 (276) 15 protein:vir:103004 Length: 268 100.0 3E-105 2E-108 593.3 14.2 239 1-243 6-268 (268) 16 protein:vir:104585 Length: 268 100.0 5E-103 3E-106 581.6 14.5 237 1-243 6-268 (268) 17 protein:vir:104585 Length: 268 95.5 2.1E-05 1.3E-08 46.2 2.2 205 14-243 1-236 (268) 18 protein:vir:103004 Length: 268 91.1 0.00071 4.4E-07 37.8 2.9 202 14-243 1-264 (268) No 1 >protein:vir:103451 Length: 309 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803103;genbank:gi:116326383;genbank:GeneID:4405480 Probab=100.00 E-value=2.1e-113 Score=638.27 Aligned_cols=237 Identities=24% Similarity=0.367 Sum_probs=222.7 Q ss_pred CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEecc-------cccccccCceeeEE Q lcl|NC_015464. 1 MATRQSLKDYIFGMLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPK-------GVRKIKLDPKISEV 73 (243) Q Consensus 1 i~sr~~LkdyilrrLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~-------~~~~~~~~~~~~~t 73 (243) .+||+|||||||||||||||||||||+||+||||||||+||||||||++|+|++|++++ +++|++.++++++| T Consensus 6 ~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~i~~de~~~~~gv~d~~~~~v~avt 85 (309) T protein:vir:10 6 SQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSNVFAVT 85 (309) T ss_pred CCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhhhccceeeccCcchhhhh Confidence 99999999999999999999999999999999999999999999999999999999963 78888899999999 Q ss_pred EEEEEeccCCceeeeEEecceeecceeeeceeecceeeee---------------eehhhHHHHHHHHHHHHHHhcCCCc Q lcl|NC_015464. 74 ITLRIYPSGGGFLGLSIPGGLVITPTEMQAMLFGGTVQGN---------------FSMQNVYSVLANMSILDTYFTIIPN 138 (243) Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~---------------~~L~~~~~~~qy~~~~d~~l~~~~~ 138 (243) +++|+ +++++++++|.+++||+++|+++.++++|+ +||+||++++|||++++++|+|.|+ T Consensus 86 ~i~~t-----~~gs~~s~dg~aty~w~~dfi~g~~~v~g~~~~s~~~~~~pn~~g~dl~y~~~l~sy~~m~~d~l~~~pd 160 (309) T protein:vir:10 86 RILRT-----NVGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) T ss_pred hhhhc-----ccccccccCcccccccccchhhhhhhhhcccccccccccCcccceehhHHHHhHHHHHHHHHHHhcccCC Confidence 99987 777889999999999999998888887752 4899999999999999999999999 Q ss_pred eeecCCCCeEEEEEeec-CCeEEEEE-------------------------------------------eecCCCchhhc Q lcl|NC_015464. 139 YAFNPFTNMLEFFEDIT-SEKVLLEV-------------------------------------------RYKYIPEEEDG 174 (243) Q Consensus 139 ~~fN~~~~rL~i~~d~~-~d~llie~-------------------------------------------~~~~~P~~~~~ 174 (243) ||||++++||++.+|++ ++.+++|+ |+..||+++|+ T Consensus 161 ~~yN~~~~~l~i~gn~~~~~~i~~e~~~k~y~d~~~~v~~~~g~~~~~~~d~~~~~~~~~~~~~~l~~~~r~~dp~~~~~ 240 (309) T protein:vir:10 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVGQDPDVKQG 240 (309) T ss_pred ceeccccceEEEEEeeecCceEEEEEecchhcccchhhccccccccccCcccccccccccccchhhhcceeccCCcchhh Confidence 99999999999999996 45555555 55689999999 Q ss_pred cccchHHHHHHHHHHHHHhhhHhhhccc-cCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC Q lcl|NC_015464. 175 IYEQPWVKEYALNLCKRTWGSNIGKYDA-PLIGGIKANYERIIQEANTELERLETVLLENYCEPLPLLRG 243 (243) Q Consensus 175 ~yNd~WlKdYaTAL~K~~wGqnL~Kfqg-qLPGGvtlnG~~i~~eA~~Eie~L~eel~~~~~~P~~~~~G 243 (243) +|||||||||||||+|+||||||+|||| ||||||||||++||+||++|+|+|||||++ +++|++++|| T Consensus 241 ~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreeL~~-l~pP~~~i~G 309 (309) T protein:vir:10 241 AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYL-LDPPFGIFVG 309 (309) T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHh-ccCCcccccC Confidence 9999999999999999999999999999 999999999999999999999999999986 8999999999 No 2 >protein:vir:104694 Length: 281 # NCBI annotation: T4-like neck protein # Family: family:all:1103 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214352;genbank:gi:61805992;genbank:GeneID:3294213 Probab=100.00 E-value=8.2e-113 Score=635.08 Aligned_cols=234 Identities=24% Similarity=0.302 Sum_probs=215.1 Q ss_pred CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEecc-----cccccccCceeeEEEE Q lcl|NC_015464. 1 MATRQSLKDYIFGMLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPK-----GVRKIKLDPKISEVIT 75 (243) Q Consensus 1 i~sr~~LkdyilrrLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~-----~~~~~~~~~~~~~t~~ 75 (243) ++||+|||||||||||||||||||||+||+||||||||+||||||||++|+|++|++++ |++++...+++++|+| T Consensus 4 p~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~~~g~~d~~~~~~~avt~i 83 (281) T protein:vir:10 4 PASRQQLIDYCLRKLGAPVLEINLDDDQIDDSVDDAIQLFNERHFDGVERMFLKYKITQADLDRGRAKGTDGVGIVTTTA 83 (281) T ss_pred CCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhhcceeeecCcceeEEEee Confidence 99999999999999999999999999999999999999999999999999999999974 6777888999999999 Q ss_pred EEEeccCCceeeeEEecceeecceeeec--------eeecceee--------------------------eeeehhhHHH Q lcl|NC_015464. 76 LRIYPSGGGFLGLSIPGGLVITPTEMQA--------MLFGGTVQ--------------------------GNFSMQNVYS 121 (243) Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~--------------------------g~~~L~~~~~ 121 (243) +|+ +++ |+|.+++||++++ .++..+.. ++++|++|+| T Consensus 84 ~~t-----~~~----~~G~at~~w~~~~ny~~~p~~v~G~~~~~g~~s~~~~~~~f~~~yq~~lndly~~~~~~L~~y~m 154 (281) T protein:vir:10 84 TST-----NIA----GYGTTTSSWYETSNFLQVPDSVVGIEKIFKFDTSTISGGMFSIKYQLFLNDLYNFNSVELLQYSM 154 (281) T ss_pred ecc-----ccc----cccccccchhhcccceecCccceeeeeeccccccccCcceeecchhhhhhhhccCCchhhhhhhh Confidence 875 222 7899999999832 22111111 2358999999 Q ss_pred HHHHHHHHHHHhcCCCceeecCCCCeEEEEEeec----CCeEEEEEeecCCCchhhccccchHHHHHHHHHHHHHhhhHh Q lcl|NC_015464. 122 VLANMSILDTYFTIIPNYAFNPFTNMLEFFEDIT----SEKVLLEVRYKYIPEEEDGIYEQPWVKEYALNLCKRTWGSNI 197 (243) Q Consensus 122 ~~qy~~~~d~~l~~~~~~~fN~~~~rL~i~~d~~----~d~llie~~~~~~P~~~~~~yNd~WlKdYaTAL~K~~wGqnL 197 (243) ++|||++++++|++.++||||++++|||++.||+ ++++++|||+++||++++++|||||||||||||+|++||||| T Consensus 155 ~~qyl~~~d~v~n~~~~~~~n~~~drL~~d~d~~~~~~d~~~~~~~y~~~dP~~~~~~YNnrWvKdYaTAL~K~~wGq~L 234 (281) T protein:vir:10 155 VKSYLEDIDFLLTTDKQVRFNKRQDRLYLDIDWGAESLDNFLVLDCYRALDPTSFTQVYNDPFLKLYLTALMKRQWGQNL 234 (281) T ss_pred hhhhhhhhHhhcCCCceEEEeeeCCeEEEEEecccccCCCceEEeeeeccCCcccccccchhHHHHHHHHHHHHHHHHHH Confidence 9999999999999999999999999999999885 579999999999999999999999999999999999999999 Q ss_pred hhccc-cCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC Q lcl|NC_015464. 198 GKYDA-PLIGGIKANYERIIQEANTELERLETVLLENYCEPLPLLRG 243 (243) Q Consensus 198 ~Kfqg-qLPGGvtlnG~~i~~eA~~Eie~L~eel~~~~~~P~~~~~G 243 (243) +|||| ||||||||||++|++||++|+|+|||||++++++||++||| T Consensus 235 ~K~qG~qLPGGvTvnG~~i~eeA~~E~e~L~eel~~~~~~pP~dmiG 281 (281) T protein:vir:10 235 IKFRGVKLPGGIELNGREIFDDAERDIESLRSRMASEYELPPYDFVG 281 (281) T ss_pred HHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCcccccC Confidence 99999 99999999999999999999999999999999999999999 No 3 >protein:vir:5657 Length: 307 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899596;genbank:gi:34419583;genbank:GeneID:2545698 Probab=100.00 E-value=6.3e-113 Score=635.70 Aligned_cols=235 Identities=22% Similarity=0.300 Sum_probs=219.1 Q ss_pred CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEeccc-----ccccccCceeeEEEE Q lcl|NC_015464. 1 MATRQSLKDYIFGMLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPKG-----VRKIKLDPKISEVIT 75 (243) Q Consensus 1 i~sr~~LkdyilrrLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~~-----~~~~~~~~~~~~t~~ 75 (243) .+||+|||||||||||||||||||||+||+||||||||+||||||||++|+|++|+++|+ ++++ .++++++|+| T Consensus 6 ~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~vte~~~~~G~~d~-~~~v~avt~I 84 (307) T protein:vir:56 6 ATSPREMKDLILRRLGAPIVNVEVSEDQVYDCISRALELYIEYHPDGVNKTYSIISLSEEQAQTGIIDL-DIPATAITKI 84 (307) T ss_pred CCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEechhhccCCeEec-Ccchhhhhhh Confidence 999999999999999999999999999999999999999999999999999999999864 5556 4689999998 Q ss_pred EEEeccCCceeeeEEecceeecceeeeceeecceeeee-------------eehhhHHHHHHHHHHHHHHhcCCCceeec Q lcl|NC_015464. 76 LRIYPSGGGFLGLSIPGGLVITPTEMQAMLFGGTVQGN-------------FSMQNVYSVLANMSILDTYFTIIPNYAFN 142 (243) Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-------------~~L~~~~~~~qy~~~~d~~l~~~~~~~fN 142 (243) +|. + ++.++++|.+++|||++|.++..++.|. .+|++|++++||+++++++|+|.|+|||| T Consensus 85 irt-----~-~s~~t~dg~aty~w~tdfi~~~~gv~g~~~~~~~~~~~~~~~~l~y~~~~~sy~~~l~d~~~p~~d~~yn 158 (307) T protein:vir:56 85 LRA-----E-SSFFTMDGNATYSWFSDFLQGLAGGPGAGSCNSYHQGMLGQGSLSDYWNLMSYKNMLTDLLSPEYDYWYN 158 (307) T ss_pred hcc-----C-cccccCCCccccCccccceecccccccccceeeecccccchhhhhHHHHHHHHHHHHHhhcccccceeec Confidence 875 3 6778899999999999999988888653 47999999999999999999999999999 Q ss_pred CCCCeEEEEEeec-CCeEEEEEeec---------------------------------------------CCCchhhc-- Q lcl|NC_015464. 143 PFTNMLEFFEDIT-SEKVLLEVRYK---------------------------------------------YIPEEEDG-- 174 (243) Q Consensus 143 ~~~~rL~i~~d~~-~d~llie~~~~---------------------------------------------~~P~~~~~-- 174 (243) ++|+||++.+|++ |+.+++|||++ .+|++++. T Consensus 159 ~~~~qL~~~~n~~~g~~~ive~~~~s~~~~~~~~~~~~~~~~~~~r~y~~~~~~~~~~n~~~~~~~~~~~~dp~~~t~~~ 238 (307) T protein:vir:56 159 GVNKQLRINANLSAGELIVVEAFVPSALLVSESATGIIGNKAATIGSYEDTTAQERWDDPYSILRQNNTIGNPNQFAEQN 238 (307) T ss_pred CcceeeeeeeeeccCCeEEEEeeccchhhhhhhhhhhcceeeecCcccccCCchhhccCcceeeeccccccCCccccccc Confidence 9999999999995 77888899863 58999875 Q ss_pred cccchHHHHHHHHHHHHHhhhHhhhccc-cCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC Q lcl|NC_015464. 175 IYEQPWVKEYALNLCKRTWGSNIGKYDA-PLIGGIKANYERIIQEANTELERLETVLLENYCEPLPLLRG 243 (243) Q Consensus 175 ~yNd~WlKdYaTAL~K~~wGqnL~Kfqg-qLPGGvtlnG~~i~~eA~~Eie~L~eel~~~~~~P~~~~~G 243 (243) +|||||||||||||+|+||||||+|||| ||||||||||++|++||++|||||||||++ |++||+|||| T Consensus 239 ~YNn~WvKdYaTALvK~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~-~~~P~~~liG 307 (307) T protein:vir:56 239 AYSVRWVKDMATAMTKQMNGVILKKHQGLQLPGGITIDGKEIYDEATQEIERLREELMS-LTVPLGVFMG 307 (307) T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhh-ccCCchhhcC Confidence 9999999999999999999999999999 999999999999999999999999999997 9999999999 No 4 >protein:vir:7198 Length: 309 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049772;genbank:gi:9632587;genbank:GeneID:1258809 Probab=100.00 E-value=8e-113 Score=635.14 Aligned_cols=237 Identities=25% Similarity=0.367 Sum_probs=221.7 Q ss_pred CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEec-------ccccccccCceeeEE Q lcl|NC_015464. 1 MATRQSLKDYIFGMLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLP-------KGVRKIKLDPKISEV 73 (243) Q Consensus 1 i~sr~~LkdyilrrLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~-------~~~~~~~~~~~~~~t 73 (243) .+||+|||||||||||||||||||||+||+||||||||+||||||||++|+|++|+++ .|++++..++++++| T Consensus 6 p~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~yl~~~i~~de~~~~~gv~d~~~~~v~aVt 85 (309) T protein:vir:71 6 PQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEERYKTGVFDLRGSNVFAVT 85 (309) T ss_pred CCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhhhcccceecCCcchhhhh Confidence 9999999999999999999999999999999999999999999999999999999996 377888899999999 Q ss_pred EEEEEeccCCceeeeEEecceeecceeeeceeecceeeee---------------eehhhHHHHHHHHHHHHHHhcCCCc Q lcl|NC_015464. 74 ITLRIYPSGGGFLGLSIPGGLVITPTEMQAMLFGGTVQGN---------------FSMQNVYSVLANMSILDTYFTIIPN 138 (243) Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~---------------~~L~~~~~~~qy~~~~d~~l~~~~~ 138 (243) +|+|+ +++++++++|.+++||+++|+++.++++|+ .||+||++++|||++++++|+|.|+ T Consensus 86 ~i~~t-----~~gs~~t~dg~aty~w~~dfi~g~~gi~g~~~~s~~~~~~pn~fg~dl~Y~~~l~sy~~m~qd~l~~~pd 160 (309) T protein:vir:71 86 RILRT-----NIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) T ss_pred hhhcC-----CcccccccCcccccccccchhhhhhhhhcccccccccccccchhhhhhHHHHHHHHHHHHHHHHhcccCC Confidence 99887 778899999999999999999888887753 2799999999999999999999999 Q ss_pred eeecCCCCeEEEEEeec-CCeEEEEEe-------------------------------------------ecCCCchhhc Q lcl|NC_015464. 139 YAFNPFTNMLEFFEDIT-SEKVLLEVR-------------------------------------------YKYIPEEEDG 174 (243) Q Consensus 139 ~~fN~~~~rL~i~~d~~-~d~llie~~-------------------------------------------~~~~P~~~~~ 174 (243) ||||++++||.+.+|++ ++.+++|++ +..||+++|+ T Consensus 161 ~~~N~~~~~l~i~gnf~~~~~i~~e~~~k~y~d~~~~v~~~~g~~~~~~~d~~~~~~~y~~~~~~l~~~~r~~dp~~~~~ 240 (309) T protein:vir:71 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVGQDPNVKQG 240 (309) T ss_pred cccccccceEEEEEeeeecceEEEEEeeccccccchhhhcchhhccccccccccceehhcccchhhhcceeccCCcchhh Confidence 99999999999999985 567677655 4479999999 Q ss_pred cccchHHHHHHHHHHHHHhhhHhhhccc-cCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC Q lcl|NC_015464. 175 IYEQPWVKEYALNLCKRTWGSNIGKYDA-PLIGGIKANYERIIQEANTELERLETVLLENYCEPLPLLRG 243 (243) Q Consensus 175 ~yNd~WlKdYaTAL~K~~wGqnL~Kfqg-qLPGGvtlnG~~i~~eA~~Eie~L~eel~~~~~~P~~~~~G 243 (243) +|||||||||||||+|+||||||+|||| ||||||||||++|++||++|+|+|||||++ +.+|++++|| T Consensus 241 ~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreeL~~-~~pP~d~i~g 309 (309) T protein:vir:71 241 AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYL-LDPPFGILVG 309 (309) T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhh-ccCCCcceeC Confidence 9999999999999999999999999999 999999999999999999999999999986 5589999999 No 5 >protein:vir:106428 Length: 306 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944100;genbank:gi:38640144;genbank:GeneID:2658189 Probab=100.00 E-value=3.9e-112 Score=631.34 Aligned_cols=237 Identities=25% Similarity=0.398 Sum_probs=220.3 Q ss_pred CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEecc-----cccccccCceeeEEEE Q lcl|NC_015464. 1 MATRQSLKDYIFGMLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPK-----GVRKIKLDPKISEVIT 75 (243) Q Consensus 1 i~sr~~LkdyilrrLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~-----~~~~~~~~~~~~~t~~ 75 (243) ++||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++++ +++|+..++++++|+| T Consensus 7 ~~s~~eLkdyiLRrLGAPii~IeVtd~Qi~DcIdrAlely~EyHydG~~k~y~~~~i~ed~~~~g~~d~~~~~v~aVtkI 86 (306) T protein:vir:10 7 VRNPRELKDLILRRLGAPVIQVEVTEDHIYDSIGRALELYKEYHHDGLNKAYLSVKLNQEQAATGYIDISAYPVFAITKI 86 (306) T ss_pred CCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHHhhhhccccccceEEEEechhcccCCeEecCCccceeeeee Confidence 99999999999999999999999999999999999999999999999999999999975 6677778889999999 Q ss_pred EEEeccCCceeeeEEecceeecceeeeceeecceeeeee----------ehhhHHHHHHHHHHHHHHhcCCCceeecCCC Q lcl|NC_015464. 76 LRIYPSGGGFLGLSIPGGLVITPTEMQAMLFGGTVQGNF----------SMQNVYSVLANMSILDTYFTIIPNYAFNPFT 145 (243) Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~----------~L~~~~~~~qy~~~~d~~l~~~~~~~fN~~~ 145 (243) +|. +++++++++|++++|||++|.+...+..++. ||+||+|+||||++|++||+|.|+||||+++ T Consensus 87 ~r~-----~~g~~~tm~Gna~~~~~q~FL~~l~~~~~~~~~~g~~~~g~dL~yy~~~~sy~~~lq~ml~p~pDf~~n~~~ 161 (306) T protein:vir:10 87 IRH-----KSMMWGGLGGGATLNFFTDFLTTLGGGPQGISYHGPFGALGNIGFFAQFQSYQNMMMDQLDPLPDYWLDPVN 161 (306) T ss_pred ecc-----CcceeeeccccccccchhhhhhhhcccccchhhccchhhhhhhhHHHHHHHHHHHHHHHhccccceeEcCCc Confidence 987 7788889999999999999877666555432 8999999999999999999999999999999 Q ss_pred CeEEEEEeec-CCeEEEEEeec----------------------------------------------CCCchhhccccc Q lcl|NC_015464. 146 NMLEFFEDIT-SEKVLLEVRYK----------------------------------------------YIPEEEDGIYEQ 178 (243) Q Consensus 146 ~rL~i~~d~~-~d~llie~~~~----------------------------------------------~~P~~~~~~yNd 178 (243) ++|.|.+|++ +|.+++|||+| ++|.+++++||| T Consensus 162 ~ql~i~~nf~~~D~l~~e~~~ks~~~v~~~~~~~~g~g~~~~~~~~~~~~~~~~np~~~l~~~~~g~~~~~~~~~~~YNn 241 (306) T protein:vir:10 162 GVVQLTGNFRENDVIIMEVHIQNFVELEKSVRGVAGAGIVAGGPTSADNKDKWMNPYSRMPSNVAGRARSEFPDQGVYNV 241 (306) T ss_pred ceEEEEEeecCCcEEEEEeecccccccchhhhcccccccccCCccccchhhhhccchhhhccccccccCCCcccccccch Confidence 9999999997 57888998865 266778999999 Q ss_pred hHHHHHHHHHHHHHhhhHhhhccc-cCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC Q lcl|NC_015464. 179 PWVKEYALNLCKRTWGSNIGKYDA-PLIGGIKANYERIIQEANTELERLETVLLENYCEPLPLLRG 243 (243) Q Consensus 179 ~WlKdYaTAL~K~~wGqnL~Kfqg-qLPGGvtlnG~~i~~eA~~Eie~L~eel~~~~~~P~~~~~G 243 (243) ||||||||||+|++|||||+|||| ||||||||||++|++||++|+|+|||||++++ +||+++|| T Consensus 242 rWvKdYaTAL~K~~wGq~L~K~qG~qLPGGVTvdG~~i~eeA~~E~e~LreEL~~~~-~~ppi~mg 306 (306) T protein:vir:10 242 RWVKDYATTLTKEVWGEILAKHQGMSLPGGVTVDGTRLVEEARQEKEVLRQELLLLE-EPLPILMG 306 (306) T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHhhhcc-CCCccccC Confidence 999999999999999999999999 99999999999999999999999999998766 68889999 No 6 >protein:vir:107900 Length: 311 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595289;genbank:gi:161622595;genbank:GeneID:5783619 Probab=100.00 E-value=8.4e-113 Score=635.02 Aligned_cols=237 Identities=26% Similarity=0.355 Sum_probs=220.7 Q ss_pred CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEecc--------cccccccCceeeE Q lcl|NC_015464. 1 MATRQSLKDYIFGMLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPK--------GVRKIKLDPKISE 72 (243) Q Consensus 1 i~sr~~LkdyilrrLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~--------~~~~~~~~~~~~~ 72 (243) -+||+|||||||||||||||||||||+||+||||||||+||||||||++|+|++|++++ ++++++..+++++ T Consensus 5 ~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~ALely~EyHydG~~k~y~~~~it~dd~~~~~~g~~d~~~~~v~av 84 (311) T protein:vir:10 5 SYNPKQLKDAILRRLGAPITNIEVTTDQVYDCIQRALELYGEYHYNGYNKGYQAFYIGHDDEEKFRNGVFDLKGRNIFAV 84 (311) T ss_pred CCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEecchhhhhccCCceecCCcchhHH Confidence 56999999999999999999999999999999999999999999999999999999974 5667778899999 Q ss_pred EEEEEEeccCCceeeeEEecceeecceeeeceeecceeeee--------------eehhhHHHHHHHHHHHHHHhcCCCc Q lcl|NC_015464. 73 VITLRIYPSGGGFLGLSIPGGLVITPTEMQAMLFGGTVQGN--------------FSMQNVYSVLANMSILDTYFTIIPN 138 (243) Q Consensus 73 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~--------------~~L~~~~~~~qy~~~~d~~l~~~~~ 138 (243) |+++|+ +++++++++|.++++|+++|.++..+++|+ .||++|+++++|+++|+++|+|.|+ T Consensus 85 t~i~~t-----~~gs~~s~dg~atY~w~~d~v~G~~~v~g~~~s~~~~~g~n~fg~~lgyf~~l~~Y~~~l~dl~~p~~d 159 (311) T protein:vir:10 85 TQILRT-----NVGSLTSMDGQATYPWFTDFVLGLAGINGGLGSSCNSFGPNAFGADLGYFTQLMQYRSMMQDLLVPLPD 159 (311) T ss_pred HHhhcc-----ccccccCCCCcccccccCchhhhhhhhhccccccccccccccccchHHHHHHHHHHHHHHHHhhccccc Confidence 999887 667889999999999999998777665432 4899999999999999999999999 Q ss_pred eeecCCCCeEEEEEeec-CCeEEEEEeec----------------------------------------------CCCch Q lcl|NC_015464. 139 YAFNPFTNMLEFFEDIT-SEKVLLEVRYK----------------------------------------------YIPEE 171 (243) Q Consensus 139 ~~fN~~~~rL~i~~d~~-~d~llie~~~~----------------------------------------------~~P~~ 171 (243) ||||++|++|++.+||+ ++.+++|||++ .||++ T Consensus 160 ~~yn~~t~~l~i~gnf~~g~~i~~e~~~k~~~~v~~~v~~~~~~~~~~~~~~~d~~~~~~~~~n~~~~l~~~rag~dp~~ 239 (311) T protein:vir:10 160 YWYNDATEQLKVMGNFVKGDFIVIEVYTRSFNGVDSMVGNTAGYGYASGGCDENEWSPGAIWDNPARRISGMRAGEDLGL 239 (311) T ss_pred cccccccceEEEeeccccccEEEEEEeccccccchhhhhhhhhhhcccccccccccccchhhcccccccccceeecCcch Confidence 99999999999999995 77888998843 38999 Q ss_pred hhccccchHHHHHHHHHHHHHhhhHhhhccc-cCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC Q lcl|NC_015464. 172 EDGIYEQPWVKEYALNLCKRTWGSNIGKYDA-PLIGGIKANYERIIQEANTELERLETVLLENYCEPLPLLRG 243 (243) Q Consensus 172 ~~~~yNd~WlKdYaTAL~K~~wGqnL~Kfqg-qLPGGvtlnG~~i~~eA~~Eie~L~eel~~~~~~P~~~~~G 243 (243) ++++|||||||||||||+|+||||||+|||| ||||||||||++|++||++|+|||||||++ |++||++||| T Consensus 240 ~~~~YNnrWvKdYaTALvK~~wGq~L~K~qG~qLPGGvTlnG~~i~eeA~~E~e~LreEl~~-~~~Pp~~liG 311 (311) T protein:vir:10 240 QDGAYNNRWVKDYATALVKEVNGNILAKHQGMQLAGGTTVDGIRLIEEARLEKERLREELDL-LDPPTPILIG 311 (311) T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHhh-cCCCchhccC Confidence 9999999999999999999999999999999 999999999999999999999999999964 9999999999 No 7 >protein:vir:6889 Length: 308 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861865;genbank:gi:32453656;genbank:GeneID:1494291 Probab=100.00 E-value=2e-111 Score=627.48 Aligned_cols=237 Identities=25% Similarity=0.356 Sum_probs=220.4 Q ss_pred CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEecc------cccccccCceeeEEE Q lcl|NC_015464. 1 MATRQSLKDYIFGMLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPK------GVRKIKLDPKISEVI 74 (243) Q Consensus 1 i~sr~~LkdyilrrLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~------~~~~~~~~~~~~~t~ 74 (243) .+||+|||||||||||||||||||||+||+||||||||+||||||||++|+|++|++++ ++++++..+++++|+ T Consensus 6 ~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~~k~g~f~~~d~~v~avT~ 85 (308) T protein:vir:68 6 AQNPKELKDVILRRLGAPIVNVELTTDQIYDCISRALELYGEYHFDGLNKGFHVFFVDDEEKYRHGVFDMRGSNVFAVTR 85 (308) T ss_pred CCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeChhhhhccceeecCCccchhhhh Confidence 99999999999999999999999999999999999999999999999999999999963 667788899999999 Q ss_pred EEEEeccCCceeeeEEecceeecceeeeceeecceeeee---------------eehhhHHHHHHHHHHHHHHhcCCCce Q lcl|NC_015464. 75 TLRIYPSGGGFLGLSIPGGLVITPTEMQAMLFGGTVQGN---------------FSMQNVYSVLANMSILDTYFTIIPNY 139 (243) Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~---------------~~L~~~~~~~qy~~~~d~~l~~~~~~ 139 (243) |+|+ ++|++.+++|.+++||+++|.++.+|.+|. .+|++|++++||+++|++||+|.|+| T Consensus 86 i~rt-----~~gs~~t~dg~a~Y~~~~dfv~g~~g~~g~~~~~~~~~~g~n~~g~~lgy~~~~~~Y~~~l~dl~~p~~~~ 160 (308) T protein:vir:68 86 IIRT-----NVGSITSMDGNATYPWFTDFLLGMAGVSGGMGSNCGKFYGPNAFGADLGYYSQLVSYMGMLQDMIAPLPDF 160 (308) T ss_pred hhhc-----cccccccccccccccccCceeeeecccCcccccccchhcccccccchhhhHHHHHHHHHHHHHhccccccc Confidence 9987 777888999999999999998887777652 38999999999999999999999999 Q ss_pred eecCCCCeEEEEEeec-CCeEEEEEe-------------------------------------------ecCCCchhhcc Q lcl|NC_015464. 140 AFNPFTNMLEFFEDIT-SEKVLLEVR-------------------------------------------YKYIPEEEDGI 175 (243) Q Consensus 140 ~fN~~~~rL~i~~d~~-~d~llie~~-------------------------------------------~~~~P~~~~~~ 175 (243) |||+++++|+|.+||+ +|.+++|++ +..||++++++ T Consensus 161 ~~n~~~~ql~i~~n~~~~d~~i~e~~~ks~le~~~~v~n~~~y~~~~~rl~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 240 (308) T protein:vir:68 161 WFNSANEQLKVMGNFRQKDVIIVESYVRSYIETHKMVGNTVGYGQVGPRDSWSISERYDNPDHNLVGRRVGEDPATKQGA 240 (308) T ss_pred ccCCcceeEEEeeeeccCceEEEEEeeecccccchhhccceeeeeecccccCccccccccchhhheeeeeccCCCccccc Confidence 9999999999999997 455556555 44799999999 Q ss_pred ccchHHHHHHHHHHHHHhhhHhhhccc-cCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC Q lcl|NC_015464. 176 YEQPWVKEYALNLCKRTWGSNIGKYDA-PLIGGIKANYERIIQEANTELERLETVLLENYCEPLPLLRG 243 (243) Q Consensus 176 yNd~WlKdYaTAL~K~~wGqnL~Kfqg-qLPGGvtlnG~~i~~eA~~Eie~L~eel~~~~~~P~~~~~G 243 (243) |||||||||||||+|+||||||+|||| ||||||||||++|++||++|+|||||||++.+ +|++++|| T Consensus 241 YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGvTlnG~~i~eeA~~E~e~LreEl~~~~-pP~~~i~g 308 (308) T protein:vir:68 241 YNNRWVKDYASALAKELNGQILAKHQGMMLPGGVTVDGVRLIEEARLEKEALREELYLLD-PPAGILVG 308 (308) T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcc-CCCceeeC Confidence 999999999999999999999999999 99999999999999999999999999998744 89999999 No 8 >protein:vir:98189 Length: 307 # NCBI annotation: gp13 head completion # Family: family:all:1103 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239190;genbank:gi:66391665;genbank:GeneID:3416291 Probab=100.00 E-value=1.2e-110 Score=623.14 Aligned_cols=237 Identities=21% Similarity=0.313 Sum_probs=217.9 Q ss_pred CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEecc----cccccccCceeeEEEEE Q lcl|NC_015464. 1 MATRQSLKDYIFGMLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPK----GVRKIKLDPKISEVITL 76 (243) Q Consensus 1 i~sr~~LkdyilrrLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~----~~~~~~~~~~~~~t~~~ 76 (243) .+||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++++ ++++...++++++|.++ T Consensus 3 t~s~~eLKdyiLRrLGAPvi~InVtd~Qi~DcId~ALqly~EyHydG~~k~y~~~~i~~d~~~~~~~~~~~~v~aVT~ii 82 (307) T protein:vir:98 3 TNNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNPRNVFDLSKEHIFAVTKVL 82 (307) T ss_pred cCCHHHHHHHHHHhcCCceeEEecCHHHHHHHHHHHHHHHHhhhcccccceeEEEEecccccccceecCCchHhHHHHHh Confidence 89999999999999999999999999999999999999999999999999999999986 55567788999999999 Q ss_pred EEeccCCceeeeEEecceeecceeeeceeecceeee--------------eeehhhHHHHHHHHHHHHHHhcCCCceeec Q lcl|NC_015464. 77 RIYPSGGGFLGLSIPGGLVITPTEMQAMLFGGTVQG--------------NFSMQNVYSVLANMSILDTYFTIIPNYAFN 142 (243) Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g--------------~~~L~~~~~~~qy~~~~d~~l~~~~~~~fN 142 (243) |+ +++|+++++|++++|||++|.++..+..+ +++|++|++++||+++++++|+|.|+|||| T Consensus 83 rt-----~~g~~~s~dg~aty~w~~d~~~g~~~~~~g~~~~s~~~g~n~~g~~l~yf~q~~~Y~~~l~dl~~p~~dy~yn 157 (307) T protein:vir:98 83 RT-----NIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWYN 157 (307) T ss_pred hc-----CccceecccccccccccCcceeecCCcccccccccceecCccccchHHHHHHHHHHHHHHHHhhccccceeec Confidence 87 78889999999999999999777665332 248999999999999999999999999999 Q ss_pred CCCCeEEEEEeec-CCeEEEEEeec---------------------------------------------CCCchh---h Q lcl|NC_015464. 143 PFTNMLEFFEDIT-SEKVLLEVRYK---------------------------------------------YIPEEE---D 173 (243) Q Consensus 143 ~~~~rL~i~~d~~-~d~llie~~~~---------------------------------------------~~P~~~---~ 173 (243) ++++||++.+|++ ||.|++||++| .+|.++ + T Consensus 158 ~~~~~l~~~gn~~~~d~i~~e~~~ks~ld~~~~i~~~~~y~~~~~~~~~d~~~~d~~~n~y~~~~~~yra~~~~~~~~~t 237 (307) T protein:vir:98 158 DDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTVTGGT 237 (307) T ss_pred CcccceeeeeccccCceEEEEEeecccccchHHhcccccceeecccccccccchhhccchhhhhhcceeecCCCCccccc Confidence 9999999999997 57777888854 233343 6 Q ss_pred ccccchHHHHHHHHHHHHHhhhHhhhccc-cCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCccccc Q lcl|NC_015464. 174 GIYEQPWVKEYALNLCKRTWGSNIGKYDA-PLIGGIKANYERIIQEANTELERLETVLLENYCEPLPLLR 242 (243) Q Consensus 174 ~~yNd~WlKdYaTAL~K~~wGqnL~Kfqg-qLPGGvtlnG~~i~~eA~~Eie~L~eel~~~~~~P~~~~~ 242 (243) .+|||||||||||||+|+||||||+|||| ||||||||||++|++||++|+|+|||||++.+++||.+|| T Consensus 238 ~aYNnrWvKdYaTALvK~~wGq~L~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~~~ppi~mi 307 (307) T protein:vir:98 238 SAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 69999999999999999999999999999 9999999999999999999999999999999999999999 No 9 >protein:vir:81013 Length: 310 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469493;genbank:gi:157311450;genbank:GeneID:5602275 Probab=100.00 E-value=1.4e-109 Score=617.43 Aligned_cols=236 Identities=24% Similarity=0.341 Sum_probs=215.1 Q ss_pred CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEecc-----cccccccCceeeEEEE Q lcl|NC_015464. 1 MATRQSLKDYIFGMLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPK-----GVRKIKLDPKISEVIT 75 (243) Q Consensus 1 i~sr~~LkdyilrrLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~-----~~~~~~~~~~~~~t~~ 75 (243) .+||+|||||||||||||||||||||+||+||||||||+||||||||++|+|++|++++ |++++..++++++|+| T Consensus 6 ~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~~g~~d~~d~~v~avt~i 85 (310) T protein:vir:81 6 TNNPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQHGVFDLSDSGVFAVTKI 85 (310) T ss_pred CCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCeeeeCCcceeeeehh Confidence 99999999999999999999999999999999999999999999999999999999986 4577778899999999 Q ss_pred EEEeccCCceeeeEEecceeecceeeeceeecceeeee---------------eehhhHHHHHHHHHHHHHHhcCCCcee Q lcl|NC_015464. 76 LRIYPSGGGFLGLSIPGGLVITPTEMQAMLFGGTVQGN---------------FSMQNVYSVLANMSILDTYFTIIPNYA 140 (243) Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~---------------~~L~~~~~~~qy~~~~d~~l~~~~~~~ 140 (243) +|+ ++|++.+++|.+++||+++|.++.++++|+ .||+||+|++||+.+++++|||.|+|| T Consensus 86 ~~t-----~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ln~lpdy~ 160 (310) T protein:vir:81 86 IRT-----NVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNMLNPLPDYW 160 (310) T ss_pred hhc-----cccccccccccccccccCceeeeeccccccccchhhhhccccccchhhhhhhHHHHHHHHHHHHhCcccccc Confidence 987 778899999999999999998888877753 279999999999999999999999999 Q ss_pred ecCCCCeEEEEEeec-CCeEEEEEeecC-----------------------------------------------CCchh Q lcl|NC_015464. 141 FNPFTNMLEFFEDIT-SEKVLLEVRYKY-----------------------------------------------IPEEE 172 (243) Q Consensus 141 fN~~~~rL~i~~d~~-~d~llie~~~~~-----------------------------------------------~P~~~ 172 (243) ||+++++|+|.+||+ ||.+++|||+|. +|. + T Consensus 161 yn~~~~ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 239 (310) T protein:vir:81 161 YNSANGQLKITGNFREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLSGIVAGMGPISEN-K 239 (310) T ss_pred cCCccceeeeeeecccCcEEEEEEEeecccCchhhhhcccceeEEcccCCccccccccccchhhhceeeeecccCCCc-c Confidence 999999999999997 778889998761 233 4 Q ss_pred hccccchHHHHHHHHHHHHHhhhHhhhccc-cCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCccccc Q lcl|NC_015464. 173 DGIYEQPWVKEYALNLCKRTWGSNIGKYDA-PLIGGIKANYERIIQEANTELERLETVLLENYCEPLPLLR 242 (243) Q Consensus 173 ~~~yNd~WlKdYaTAL~K~~wGqnL~Kfqg-qLPGGvtlnG~~i~~eA~~Eie~L~eel~~~~~~P~~~~~ 242 (243) |++|||||||||||||+|+||||||+|||| ||||||||||++|++||++|+|||||||+....+|+.+|| T Consensus 240 ~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~pP~~i~~~ 310 (310) T protein:vir:81 240 QGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQLPGGVTVDGIRIIEEARADIEKLRQELELLDPPFGILMI 310 (310) T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeC Confidence 889999999999999999999999999999 9999999999999999999999999999643333344445 No 10 >protein:vir:6589 Length: 310 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891720;genbank:gi:33620666;genbank:GeneID:1725419 Probab=100.00 E-value=1.4e-109 Score=617.43 Aligned_cols=236 Identities=24% Similarity=0.341 Sum_probs=215.1 Q ss_pred CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEecc-----cccccccCceeeEEEE Q lcl|NC_015464. 1 MATRQSLKDYIFGMLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPK-----GVRKIKLDPKISEVIT 75 (243) Q Consensus 1 i~sr~~LkdyilrrLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~-----~~~~~~~~~~~~~t~~ 75 (243) .+||+|||||||||||||||||||||+||+||||||||+||||||||++|+|++|++++ |++++..++++++|+| T Consensus 6 ~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~~g~~d~~d~~v~avt~i 85 (310) T protein:vir:65 6 TNNPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQHGVFDLSDSGVFAVTKI 85 (310) T ss_pred CCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCeeeeCCcceeeeehh Confidence 99999999999999999999999999999999999999999999999999999999986 4577778899999999 Q ss_pred EEEeccCCceeeeEEecceeecceeeeceeecceeeee---------------eehhhHHHHHHHHHHHHHHhcCCCcee Q lcl|NC_015464. 76 LRIYPSGGGFLGLSIPGGLVITPTEMQAMLFGGTVQGN---------------FSMQNVYSVLANMSILDTYFTIIPNYA 140 (243) Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~---------------~~L~~~~~~~qy~~~~d~~l~~~~~~~ 140 (243) +|+ ++|++.+++|.+++||+++|.++.++++|+ .||+||+|++||+.+++++|||.|+|| T Consensus 86 ~~t-----~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ln~lpdy~ 160 (310) T protein:vir:65 86 IRT-----NVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNMLNPLPDYW 160 (310) T ss_pred hhc-----cccccccccccccccccCceeeeeccccccccchhhhhccccccchhhhhhhHHHHHHHHHHHHhCcccccc Confidence 987 778899999999999999998888877753 279999999999999999999999999 Q ss_pred ecCCCCeEEEEEeec-CCeEEEEEeecC-----------------------------------------------CCchh Q lcl|NC_015464. 141 FNPFTNMLEFFEDIT-SEKVLLEVRYKY-----------------------------------------------IPEEE 172 (243) Q Consensus 141 fN~~~~rL~i~~d~~-~d~llie~~~~~-----------------------------------------------~P~~~ 172 (243) ||+++++|+|.+||+ ||.+++|||+|. +|. + T Consensus 161 yn~~~~ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 239 (310) T protein:vir:65 161 YNSANGQLKITGNFREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLSGIVAGMGPISEN-K 239 (310) T ss_pred cCCccceeeeeeecccCcEEEEEEEeecccCchhhhhcccceeEEcccCCccccccccccchhhhceeeeecccCCCc-c Confidence 999999999999997 778889998761 233 4 Q ss_pred hccccchHHHHHHHHHHHHHhhhHhhhccc-cCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCccccc Q lcl|NC_015464. 173 DGIYEQPWVKEYALNLCKRTWGSNIGKYDA-PLIGGIKANYERIIQEANTELERLETVLLENYCEPLPLLR 242 (243) Q Consensus 173 ~~~yNd~WlKdYaTAL~K~~wGqnL~Kfqg-qLPGGvtlnG~~i~~eA~~Eie~L~eel~~~~~~P~~~~~ 242 (243) |++|||||||||||||+|+||||||+|||| ||||||||||++|++||++|+|||||||+....+|+.+|| T Consensus 240 ~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~pP~~i~~~ 310 (310) T protein:vir:65 240 QGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQLPGGVTVDGIRIIEEARADIEKLRQELELLDPPFGILMI 310 (310) T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeC Confidence 889999999999999999999999999999 9999999999999999999999999999643333344445 No 11 >protein:vir:100534 Length: 314 # NCBI annotation: gp13 head completion protein # Family: family:all:1103 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656375;genbank:gi:109290126;genbank:GeneID:4156512 Probab=100.00 E-value=7.9e-110 Score=618.74 Aligned_cols=237 Identities=21% Similarity=0.315 Sum_probs=217.0 Q ss_pred CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEeccc-----ccccccCceeeEEEE Q lcl|NC_015464. 1 MATRQSLKDYIFGMLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPKG-----VRKIKLDPKISEVIT 75 (243) Q Consensus 1 i~sr~~LkdyilrrLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~~-----~~~~~~~~~~~~t~~ 75 (243) .+||+|||||||||||||||||||||+|||||||||||+||||||||++|+|++|+++|+ ++++...+++++|+| T Consensus 5 ~~s~~eLkdyiLRrLGAPvi~InVtddQI~DcId~ALqlf~EyHyDG~~k~yl~~~ite~~~k~g~~d~~~~~v~avt~i 84 (314) T protein:vir:10 5 TNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVFAVTQV 84 (314) T ss_pred CCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCEEeeCCccceehhhh Confidence 999999999999999999999999999999999999999999999999999999999875 566777889999999 Q ss_pred EEEeccCCceeeeEEecceeecceeeeceeecceeeee------------eehhhHHHHHHHHHHHHHHhcCCCceeecC Q lcl|NC_015464. 76 LRIYPSGGGFLGLSIPGGLVITPTEMQAMLFGGTVQGN------------FSMQNVYSVLANMSILDTYFTIIPNYAFNP 143 (243) Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~------------~~L~~~~~~~qy~~~~d~~l~~~~~~~fN~ 143 (243) +|+ +++++.+++|.++|||+++|.++.++++++ .+|++|+++++|+.+|+++|+|.|+||||+ T Consensus 85 ~rt-----~~~~~~~~~g~a~Y~~~~d~~lG~~~~~~~~~~~~~~pn~fg~~~~yf~~~m~y~~ml~d~~~pl~d~~~n~ 159 (314) T protein:vir:10 85 IRT-----NIGSIITMDGTAVYPWFTDFVMGMTGASIGGQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDFFFNS 159 (314) T ss_pred hhc-----ccccccccCccccccccCceeeeecccccccccceeccccccchhHHHHHHHHHHHHHHhhhcccccccccC Confidence 887 778889999999999999999988887632 479999999999999999999999999999 Q ss_pred CCCeEEEEEeecC-CeEEEEEee----------------------------------------cCCCc------------ Q lcl|NC_015464. 144 FTNMLEFFEDITS-EKVLLEVRY----------------------------------------KYIPE------------ 170 (243) Q Consensus 144 ~~~rL~i~~d~~~-d~llie~~~----------------------------------------~~~P~------------ 170 (243) .|++|+|.+||+. |.|.+|++. ..||+ T Consensus 160 ~~~~l~i~~nf~~~Dll~~e~~~k~~~~~d~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~nP~~~~~~~~~g~~~ 239 (314) T protein:vir:10 160 TTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGVDSTLSGTSAGYGFAMSDDDSVPSVAQKYANPNMSHGQIYAGQSN 239 (314) T ss_pred CcceEEEeecccCCcEEEEEEEeccccccchhccccccccceeeeeceecccccccchhhhhhhcCcccccceeeecccc Confidence 9999999999974 555566664 25676 Q ss_pred --hhhccccchHHHHHHHHHHHHHhhhHhhhccc-cCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC Q lcl|NC_015464. 171 --EEDGIYEQPWVKEYALNLCKRTWGSNIGKYDA-PLIGGIKANYERIIQEANTELERLETVLLENYCEPLPLLRG 243 (243) Q Consensus 171 --~~~~~yNd~WlKdYaTAL~K~~wGqnL~Kfqg-qLPGGvtlnG~~i~~eA~~Eie~L~eel~~~~~~P~~~~~G 243 (243) +++++|||||||||||||+|+||||||+|||| ||||||||||+|||+||++|+|+|||||++ ..+||+++|| T Consensus 240 ~~~~~~~yNnrWvKdYaTALvK~~wGqnL~K~qG~qLPGGVTldG~~l~eea~~E~e~Lreel~~-~~~~pp~~mg 314 (314) T protein:vir:10 240 GMSKDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELEL-LDGPPPIIMG 314 (314) T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHhCCcccCCceeecHHHHHHHHHHHHHHHHHHHhh-ccCCCccccC Confidence 46889999999999999999999999999999 999999999999999999999999999987 5557888899 No 12 >protein:vir:101153 Length: 307 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932504;genbank:gi:37651630;genbank:GeneID:2610646 Probab=100.00 E-value=2.4e-109 Score=616.05 Aligned_cols=237 Identities=20% Similarity=0.303 Sum_probs=217.8 Q ss_pred CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEecc-----cccccccCceeeEEEE Q lcl|NC_015464. 1 MATRQSLKDYIFGMLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPK-----GVRKIKLDPKISEVIT 75 (243) Q Consensus 1 i~sr~~LkdyilrrLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~-----~~~~~~~~~~~~~t~~ 75 (243) -+||+|||||||||||||||||||||+||+||||||||+||||||||++|+|++|+++| |++++..++++++|+| T Consensus 5 ~~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~ite~~~~~g~~d~~d~~v~avt~i 84 (307) T protein:vir:10 5 CNNPLELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLTEQQAKTGIIDMKGGNVFAVTQV 84 (307) T ss_pred CCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhccCCEEecCCcchhhhhhh Confidence 99999999999999999999999999999999999999999999999999999999986 5777778899999999 Q ss_pred EEEeccCCceeeeEEecceeecceeeeceeecceeee------------eeehhhHHHHHHHHHHHHHHhcCCCceeecC Q lcl|NC_015464. 76 LRIYPSGGGFLGLSIPGGLVITPTEMQAMLFGGTVQG------------NFSMQNVYSVLANMSILDTYFTIIPNYAFNP 143 (243) Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g------------~~~L~~~~~~~qy~~~~d~~l~~~~~~~fN~ 143 (243) +|+ +++++++++|.+++|||++|.++.++..+ +.||++|++++||+.+|+++|+|.|+||||+ T Consensus 85 irt-----~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~~~~~~~~~n~~g~~l~y~t~l~sy~~~m~d~~~pl~d~~yn~ 159 (307) T protein:vir:10 85 LRT-----NVGSIITMDGTAVYPWFTDFVMGMTGASIGGQCKWYGPNAFGGDLGYFTQLMSYRSMMGDLLSPLPDFYYNS 159 (307) T ss_pred hhh-----ccccccccCcccccccccccceeecCCccceeeeeecccccccchhhhhHHHHHHHHHHhhcccccceeecC Confidence 998 77899999999999999999888877642 2489999999999999999999999999999 Q ss_pred CCCeEEEEEeec-CCeEEEEEee---------------------------------------------cCCCchhh--cc Q lcl|NC_015464. 144 FTNMLEFFEDIT-SEKVLLEVRY---------------------------------------------KYIPEEED--GI 175 (243) Q Consensus 144 ~~~rL~i~~d~~-~d~llie~~~---------------------------------------------~~~P~~~~--~~ 175 (243) +|++|+|.+||+ +|.+++|+++ +.+|++++ ++ T Consensus 160 ~t~~l~i~~nf~~~d~i~~e~~~k~yle~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~~ 239 (307) T protein:vir:10 160 SSEMMKIAGQFKAGDLIVFEVYCKSYANVDTMLAGTSAGYGFAMSCDGDEPSQSQLYGNPNLAGGAIYAGGSNGMLKDGA 239 (307) T ss_pred CceeEEEeeeccCCceEEEEEEeccccchhhhhhcccccceEeeccccCCccchhhcCCchhhcccccccCccccccccc Confidence 999999999997 4556566663 35788876 79 Q ss_pred ccchHHHHHHHHHHHHHhhhHhhhccc-cCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC Q lcl|NC_015464. 176 YEQPWVKEYALNLCKRTWGSNIGKYDA-PLIGGIKANYERIIQEANTELERLETVLLENYCEPLPLLRG 243 (243) Q Consensus 176 yNd~WlKdYaTAL~K~~wGqnL~Kfqg-qLPGGvtlnG~~i~~eA~~Eie~L~eel~~~~~~P~~~~~G 243 (243) |||||||||||||+|++|||||+|||| ||||||||||++|++||++|+|+|||||+++++ ||+++|| T Consensus 240 YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTldG~~i~eeA~~E~e~LreeL~~~~~-~ppi~mg 307 (307) T protein:vir:10 240 YNNRWVKDMSTAYVKELNGQVLAKHQGMQLPGGITIDGVRLIEEARIDIDKLRNELELLDA-PPPIIMG 307 (307) T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCC-CCccccC Confidence 999999999999999999999999999 999999999999999999999999999987655 7778889 No 13 >protein:vir:101857 Length: 307 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238876;genbank:gi:66391951;genbank:GeneID:3416684 Probab=100.00 E-value=2.4e-109 Score=616.05 Aligned_cols=237 Identities=20% Similarity=0.303 Sum_probs=217.8 Q ss_pred CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEecc-----cccccccCceeeEEEE Q lcl|NC_015464. 1 MATRQSLKDYIFGMLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPK-----GVRKIKLDPKISEVIT 75 (243) Q Consensus 1 i~sr~~LkdyilrrLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~-----~~~~~~~~~~~~~t~~ 75 (243) -+||+|||||||||||||||||||||+||+||||||||+||||||||++|+|++|+++| |++++..++++++|+| T Consensus 5 ~~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~ite~~~~~g~~d~~d~~v~avt~i 84 (307) T protein:vir:10 5 CNNPLELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLTEQQAKTGIIDMKGGNVFAVTQV 84 (307) T ss_pred CCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhccCCEEecCCcchhhhhhh Confidence 99999999999999999999999999999999999999999999999999999999986 5777778899999999 Q ss_pred EEEeccCCceeeeEEecceeecceeeeceeecceeee------------eeehhhHHHHHHHHHHHHHHhcCCCceeecC Q lcl|NC_015464. 76 LRIYPSGGGFLGLSIPGGLVITPTEMQAMLFGGTVQG------------NFSMQNVYSVLANMSILDTYFTIIPNYAFNP 143 (243) Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g------------~~~L~~~~~~~qy~~~~d~~l~~~~~~~fN~ 143 (243) +|+ +++++++++|.+++|||++|.++.++..+ +.||++|++++||+.+|+++|+|.|+||||+ T Consensus 85 irt-----~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~~~~~~~~~n~~g~~l~y~t~l~sy~~~m~d~~~pl~d~~yn~ 159 (307) T protein:vir:10 85 LRT-----NVGSIITMDGTAVYPWFTDFVMGMTGASIGGQCKWYGPNAFGGDLGYFTQLMSYRSMMGDLLSPLPDFYYNS 159 (307) T ss_pred hhh-----ccccccccCcccccccccccceeecCCccceeeeeecccccccchhhhhHHHHHHHHHHhhcccccceeecC Confidence 998 77899999999999999999888877642 2489999999999999999999999999999 Q ss_pred CCCeEEEEEeec-CCeEEEEEee---------------------------------------------cCCCchhh--cc Q lcl|NC_015464. 144 FTNMLEFFEDIT-SEKVLLEVRY---------------------------------------------KYIPEEED--GI 175 (243) Q Consensus 144 ~~~rL~i~~d~~-~d~llie~~~---------------------------------------------~~~P~~~~--~~ 175 (243) +|++|+|.+||+ +|.+++|+++ +.+|++++ ++ T Consensus 160 ~t~~l~i~~nf~~~d~i~~e~~~k~yle~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~~ 239 (307) T protein:vir:10 160 SSEMMKIAGQFKAGDLIVFEVYCKSYANVDTMLAGTSAGYGFAMSCDGDEPSQSQLYGNPNLAGGAIYAGGSNGMLKDGA 239 (307) T ss_pred CceeEEEeeeccCCceEEEEEEeccccchhhhhhcccccceEeeccccCCccchhhcCCchhhcccccccCccccccccc Confidence 999999999997 4556566663 35788876 79 Q ss_pred ccchHHHHHHHHHHHHHhhhHhhhccc-cCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC Q lcl|NC_015464. 176 YEQPWVKEYALNLCKRTWGSNIGKYDA-PLIGGIKANYERIIQEANTELERLETVLLENYCEPLPLLRG 243 (243) Q Consensus 176 yNd~WlKdYaTAL~K~~wGqnL~Kfqg-qLPGGvtlnG~~i~~eA~~Eie~L~eel~~~~~~P~~~~~G 243 (243) |||||||||||||+|++|||||+|||| ||||||||||++|++||++|+|+|||||+++++ ||+++|| T Consensus 240 YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTldG~~i~eeA~~E~e~LreeL~~~~~-~ppi~mg 307 (307) T protein:vir:10 240 YNNRWVKDMSTAYVKELNGQVLAKHQGMQLPGGITIDGVRLIEEARIDIDKLRNELELLDA-PPPIIMG 307 (307) T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCC-CCccccC Confidence 999999999999999999999999999 999999999999999999999999999987655 7778889 No 14 >protein:vir:106985 Length: 276 # NCBI annotation: neck protein gp13 # Family: family:all:1103 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195127;genbank:gi:58532904;uniprot:Q5GQW0;genbank:GeneID:3260482 Probab=100.00 E-value=2.3e-106 Score=599.74 Aligned_cols=232 Identities=25% Similarity=0.319 Sum_probs=210.3 Q ss_pred CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEecccccccccCceeeEEEEEEEec Q lcl|NC_015464. 1 MATRQSLKDYIFGMLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPKGVRKIKLDPKISEVITLRIYP 80 (243) Q Consensus 1 i~sr~~LkdyilrrLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~~~~~~~~~~~~~~t~~~~~~~ 80 (243) ++||+|||||||||||||||||||||+||+||||||||+||||||||++|+|++|++++++..-. .+.+.+ T Consensus 4 p~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~dd~~~~------~~~~~~--- 74 (276) T protein:vir:10 4 PSSKQELIDYCKRQLGAPVLQINTDSAQDDDIIDQAIQYYHEYHFDGIERMYLKHQFTADDVTRF------TSSDQL--- 74 (276) T ss_pred CCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHHhhhh------hhhhhc--- Confidence 99999999999999999999999999999999999999999999999999999999998754432 222222 Q ss_pred cCCceeeeEEecceeecceeeeceeecceee----------------------------------eeeehhhHHHHHHHH Q lcl|NC_015464. 81 SGGGFLGLSIPGGLVITPTEMQAMLFGGTVQ----------------------------------GNFSMQNVYSVLANM 126 (243) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------------------g~~~L~~~~~~~qy~ 126 (243) .++++++++++.+.|+|+.++.++..++. |++++++|+++++|+ T Consensus 75 --~~~~s~~~~~g~~~Y~~~pd~v~gi~~v~~g~s~~~g~n~f~~~~q~fl~d~~~~~~~ql~~~g~~~~~dy~~ve~~~ 152 (276) T protein:vir:10 75 --TTAPNNDDWENRNNYIQVPDAVIGISKVFGVSSNFLRNNLFGLSNQYYLMDLFSFSTGSAFSFGNFDLTNYYMIKQHF 152 (276) T ss_pred --ccccceeeeeccCcceecCcchhhhhhhcccCccccCCccccccHHHHHHHHhcccccceeeccceeeeeEEEEEEEe Confidence 37788899999999999999866555444 345788889999999 Q ss_pred HHHHHHhcCCC--ceeecCCCCeEEEEEeec----CCeEEEEEeecCCCchhhccccchHHHHHHHHHHHHHhhhHhhhc Q lcl|NC_015464. 127 SILDTYFTIIP--NYAFNPFTNMLEFFEDIT----SEKVLLEVRYKYIPEEEDGIYEQPWVKEYALNLCKRTWGSNIGKY 200 (243) Q Consensus 127 ~~~d~~l~~~~--~~~fN~~~~rL~i~~d~~----~d~llie~~~~~~P~~~~~~yNd~WlKdYaTAL~K~~wGqnL~Kf 200 (243) +++|++++..+ .|+||++++|||++.+|. +.+++++||+..||++++++|||||||||||||+|++|||||+|| T Consensus 153 ~~id~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~dP~~~~~~YNn~WvKdYaTAL~K~~wGq~L~K~ 232 (276) T protein:vir:10 153 ETIDMIINTGSLIEYRFNKRQDRLYIDIDTSRIVEDQYLLIDCYRYLNPDDFTQVYDDSFVKRYATALLKRQWGQNLIKY 232 (276) T ss_pred cccceeecCCceeEEeeeccCCccccccccccccCCHHHHhhcccccCCcccccccchhHHHHHHHHHHHHHHHHHHHHh Confidence 99999998765 667899999999998773 578889999999999999999999999999999999999999999 Q ss_pred cc-cCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC Q lcl|NC_015464. 201 DA-PLIGGIKANYERIIQEANTELERLETVLLENYCEPLPLLRG 243 (243) Q Consensus 201 qg-qLPGGvtlnG~~i~~eA~~Eie~L~eel~~~~~~P~~~~~G 243 (243) || ||||||||||++|++||++|+|+|||||+++|++||++||| T Consensus 233 qG~qLPGGvTvnG~~i~eeA~~E~e~L~eel~~~~~~Pp~~miG 276 (276) T protein:vir:10 233 NSVQLPGGITLNGRQIWEDGNNEVRELESRMMTDYSLPPMDMIG 276 (276) T ss_pred CCccCCCceeeCHHHHHHHHHHHHHHHHHHHHhhcCCCceeecC Confidence 99 99999999999999999999999999999999999999999 No 15 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=100.00 E-value=3.5e-105 Score=593.28 Aligned_cols=239 Identities=21% Similarity=0.360 Sum_probs=204.0 Q ss_pred CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEecccccccccCceeeEEE------ Q lcl|NC_015464. 1 MATRQSLKDYIFGMLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPKGVRKIKLDPKISEVI------ 74 (243) Q Consensus 1 i~sr~~LkdyilrrLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~~~~~~~~~~~~~~t~------ 74 (243) ++||+|||||||||||||||||||||+||+||||||||+||||||||++|+|++|+++++.++.....+...+. T Consensus 6 ~~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alelf~EyHydG~~k~y~~~~it~~~~~~g~~~t~~g~~~~~~~~ 85 (268) T protein:vir:10 6 PASKTELKNYALRRLGYPAIDINVCDEQLDDLVEEAIDYFQEYHYNGSYQSMMKIEVTDAIKTAAQSTTQQGSTNWYENN 85 (268) T ss_pred CCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccchhcceEEEEechHHhhhhhhcccCccccccccc Confidence 99999999999999999999999999999999999999999999999999999999988765422111111110 Q ss_pred -----------EEEEeccCCceeeeEEecceeecceeeeceeecceeeeeeehhhHHHHHHHHHHHHHHhcC--CCceee Q lcl|NC_015464. 75 -----------TLRIYPSGGGFLGLSIPGGLVITPTEMQAMLFGGTVQGNFSMQNVYSVLANMSILDTYFTI--IPNYAF 141 (243) Q Consensus 75 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~L~~~~~~~qy~~~~d~~l~~--~~~~~f 141 (243) ++..+. ++++..++.+.+++|++.. ++.....+++..++.|+|+++|+++++++++. .++++| T Consensus 86 ~fi~~pp~v~gv~~vf~---~~~~~~~~~~n~~~~~~q~-~lnd~~~~~~g~il~y~~~~~~l~~~~~~~~s~~~~~~~~ 161 (268) T protein:vir:10 86 NYVSLPPGVLGVNHVYT---NIGASSVVPGNIFNIKYQI-FLNDIYAMTHGQILHYFMTSQYLETLDWVTNSQANRRVKF 161 (268) T ss_pred cceecCCceeehhhhhh---cccccccccccccccchhh-hhcchhhhhHHhhhhhhhccceeehhhhhhcccCccceEE Confidence 011111 2233345556666666655 44444445566899999999999999999884 688999 Q ss_pred cCCCCeEEEEEeec----CCeEEEEEeecCCCchhhccccchHHHHHHHHHHHHHhhhHhhhccc-cCCCceeecHHHHH Q lcl|NC_015464. 142 NPFTNMLEFFEDIT----SEKVLLEVRYKYIPEEEDGIYEQPWVKEYALNLCKRTWGSNIGKYDA-PLIGGIKANYERII 216 (243) Q Consensus 142 N~~~~rL~i~~d~~----~d~llie~~~~~~P~~~~~~yNd~WlKdYaTAL~K~~wGqnL~Kfqg-qLPGGvtlnG~~i~ 216 (243) |++++|||+++||+ ++++++||++++||++++++|||||||||||||+|++|||||+|||| ||||||||||++|+ T Consensus 162 ~~~~~rly~d~d~~~~~~~~~~~i~~~~~~dP~~~~~~YNn~WvKdYatAL~K~~wGq~L~K~qG~qLPGGvTlnG~~i~ 241 (268) T protein:vir:10 162 NEHQARLYLDFDWDTLQAGDFIMVDLTMRQDPDEYTGMYNDAWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQIL 241 (268) T ss_pred EeeeceeEEeeccCCcccchhhhhHhhcccCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeeCHHHHH Confidence 99999999999986 57899999999999999999999999999999999999999999999 99999999999999 Q ss_pred HHHHHHHHHHHHHHHhhcCCCcccccC Q lcl|NC_015464. 217 QEANTELERLETVLLENYCEPLPLLRG 243 (243) Q Consensus 217 ~eA~~Eie~L~eel~~~~~~P~~~~~G 243 (243) +||++|+|+|||||+++|++||+|||| T Consensus 242 eeA~~E~e~L~eel~~~~~~Pp~~liG 268 (268) T protein:vir:10 242 EDASQFKKDLEENIRKEYELPPMDLIG 268 (268) T ss_pred HHHHHHHHHHHHHHHhhcCCCcceecC Confidence 999999999999999999999999999 No 16 >protein:vir:104585 Length: 268 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214649;genbank:gi:61806290;genbank:GeneID:3294640 Probab=100.00 E-value=4.6e-103 Score=581.65 Aligned_cols=237 Identities=21% Similarity=0.356 Sum_probs=200.7 Q ss_pred CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEecccccccccCceeeEEEEEEEec Q lcl|NC_015464. 1 MATRQSLKDYIFGMLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPKGVRKIKLDPKISEVITLRIYP 80 (243) Q Consensus 1 i~sr~~LkdyilrrLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~~~~~~~~~~~~~~t~~~~~~~ 80 (243) .+||+|||||||||||||||||||||+||+||||||||+||||||||++|+|++|++|+..++.....+...|. .++ T Consensus 6 ~~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~f~vT~~~rt~~~~~t~~~t~---~~~ 82 (268) T protein:vir:10 6 PASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIKTQAKGFTQEGST---PWY 82 (268) T ss_pred CCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHHhhccccccccccc---ccc Confidence 99999999999999999999999999999999999999999999999999999999998766544322222221 222 Q ss_pred cCCceeeeEEecce-------------------eecceeeeceeecceeeeeeehhhHHHHHHHHHHHHHHhcC--CCce Q lcl|NC_015464. 81 SGGGFLGLSIPGGL-------------------VITPTEMQAMLFGGTVQGNFSMQNVYSVLANMSILDTYFTI--IPNY 139 (243) Q Consensus 81 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~g~~~L~~~~~~~qy~~~~d~~l~~--~~~~ 139 (243) +.+++. ..|++. ++ +...++++......+.++|+.|++.+||+++++++++. .+++ T Consensus 83 ~~~nyi--~~p~~~~Gv~~vf~~~~~~~~~~~nm~-~~~~q~~lnd~~~~~~~~i~~~~~~~~~l~~l~~~~~~~~~~~~ 159 (268) T protein:vir:10 83 GQDNYV--STPPGTLGINHVYTNIGASSIVPGNIF-NIKYQIFLNDIYSMTHGQILHYFLTSQYLETLDFVTNSQANRRV 159 (268) T ss_pred CCCcce--ecCccccchhhhhccccccccccchhh-cccchhhccccccccceeEEEEEEeeeeecchhhhhccCCCcce Confidence 222221 112211 11 11123344444445778999999999999999999995 5789 Q ss_pred eecCCCCeEEEEEeec----CCeEEEEEeecCCCchhhccccchHHHHHHHHHHHHHhhhHhhhccc-cCCCceeecHHH Q lcl|NC_015464. 140 AFNPFTNMLEFFEDIT----SEKVLLEVRYKYIPEEEDGIYEQPWVKEYALNLCKRTWGSNIGKYDA-PLIGGIKANYER 214 (243) Q Consensus 140 ~fN~~~~rL~i~~d~~----~d~llie~~~~~~P~~~~~~yNd~WlKdYaTAL~K~~wGqnL~Kfqg-qLPGGvtlnG~~ 214 (243) +||++++||+++.+|+ +++++++||++.||++++++|||||||||||||+|++|||||+|||| ||||||||||++ T Consensus 160 ~~~~~~~rl~~~~~~~~~~~~~~~l~~~~~~~dp~~~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~ 239 (268) T protein:vir:10 160 KWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPTTFTDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQ 239 (268) T ss_pred eeecccCceeeeeeccCcccchhhhhhhhhccCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHH Confidence 9999999999999985 47899999999999999999999999999999999999999999999 999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccccC Q lcl|NC_015464. 215 IIQEANTELERLETVLLENYCEPLPLLRG 243 (243) Q Consensus 215 i~~eA~~Eie~L~eel~~~~~~P~~~~~G 243 (243) |++||++|+|+|||||+++|++||+|||| T Consensus 240 i~eea~~E~e~L~eel~~~~~~Pp~~liG 268 (268) T protein:vir:10 240 ILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccccC Confidence 99999999999999999999999999999 No 17 >protein:vir:104585 Length: 268 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214649;genbank:gi:61806290;genbank:GeneID:3294640 Probab=95.48 E-value=2.1e-05 Score=46.23 Aligned_cols=205 Identities=8% Similarity=-0.046 Sum_probs=96.9 Q ss_pred hcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEecccccc------------------cccCceeeEEEE Q lcl|NC_015464. 14 MLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPKGVRK------------------IKLDPKISEVIT 75 (243) Q Consensus 14 rLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~~~~~------------------~~~~~~~~~t~~ 75 (243) +=+|- .+ +-. +++|.+|.--+. ==+.+.+++++++ ....-++++|.+ T Consensus 1 m~~~~---~~-s~~---eLkdyiLRrLGa--------Pii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~f~vT~~ 65 (268) T protein:vir:10 1 MSATR---PA-SKT---ELKDYALRRLGF--------PTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEA 65 (268) T ss_pred CCCCC---CC-CHH---HHHHHHHHhcCC--------ceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechH Confidence 11110 00 112 222222221110 1133344433222 122347788887 Q ss_pred EEEeccCCceeeeEEecceeecceeeeceeecceeeeeeehhhHHHHHHHHHHHHHHhcCCCceeecCCC--CeEEEEEe Q lcl|NC_015464. 76 LRIYPSGGGFLGLSIPGGLVITPTEMQAMLFGGTVQGNFSMQNVYSVLANMSILDTYFTIIPNYAFNPFT--NMLEFFED 153 (243) Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~L~~~~~~~qy~~~~d~~l~~~~~~~fN~~~--~rL~i~~d 153 (243) .|. +++|+ ++++++..+|.++++..+-++.|. +.+|.+++||+.++.+||+|.||||||+.+ +.+.|-.. T Consensus 66 ~rt-----~~~~~-t~~~t~~~~~~~nyi~~p~~~~Gv--~~vf~~~~~~~~~~~nm~~~~~q~~lnd~~~~~~~~i~~~ 137 (268) T protein:vir:10 66 IKT-----QAKGF-TQEGSTPWYGQDNYVSTPPGTLGI--NHVYTNIGASSIVPGNIFNIKYQIFLNDIYSMTHGQILHY 137 (268) T ss_pred Hhh-----ccccc-cccccccccCCCcceecCccccch--hhhhccccccccccchhhcccchhhccccccccceeEEEE Confidence 765 44444 678888888888888888888885 788999999999999999999999999954 33434333 Q ss_pred ec-CCeEE-EEEeec--CCCchhhccccchHHHHHHHHHHH-HHhhhHhhhc-cccCCCcee--ecHHHHHHHHHHHHHH Q lcl|NC_015464. 154 IT-SEKVL-LEVRYK--YIPEEEDGIYEQPWVKEYALNLCK-RTWGSNIGKY-DAPLIGGIK--ANYERIIQEANTELER 225 (243) Q Consensus 154 ~~-~d~ll-ie~~~~--~~P~~~~~~yNd~WlKdYaTAL~K-~~wGqnL~Kf-qgqLPGGvt--lnG~~i~~eA~~Eie~ 225 (243) +. ...+. +|+.-+ .++.-.-+...+||--+-...-.. ..| .|.+. .|.=|...+ -|-+=+-+=|..-+++ T Consensus 138 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~--~l~~~~~~~dp~~~~~~YNn~WvKdYaTAL~K~ 215 (268) T protein:vir:10 138 FLTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDY--IMVDMTMRQDPTTFTDMFNDNWLKDYVEALFQQ 215 (268) T ss_pred EEeeeeecchhhhhccCCCcceeeecccCceeeeeeccCcccchh--hhhhhhhccCCcccchhhhhhHHHHHHHHHHHH Confidence 32 23332 333322 122110001112221110000000 000 02222 334444222 2444445555555665 Q ss_pred HHHHHHhhcC---CCcccccC Q lcl|NC_015464. 226 LETVLLENYC---EPLPLLRG 243 (243) Q Consensus 226 L~eel~~~~~---~P~~~~~G 243 (243) +--..+.+++ +|=++=+= T Consensus 216 ~wGq~L~K~qG~qLPGGvTvn 236 (268) T protein:vir:10 216 QWGRNLSKYDGIQMLGGVTLN 236 (268) T ss_pred HHHHHHHHhcCccCCCceeec Confidence 5555554444 22222111 No 18 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=91.09 E-value=0.00071 Score=37.84 Aligned_cols=202 Identities=8% Similarity=-0.056 Sum_probs=100.0 Q ss_pred hcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceeEEEEecccccccc---------c---CceeeEEEEEEEecc Q lcl|NC_015464. 14 MLGSPVITVELTDFQIDENINFTIQKFSEFAMYGKLKGTLLIDLPKGVRKIK---------L---DPKISEVITLRIYPS 81 (243) Q Consensus 14 rLGAPvl~InVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~~~~~~~~~~---------~---~~~~~~t~~~~~~~~ 81 (243) +=+|-+ -+-.| ++|.+|.--+. ==+.+.+++++++.- + +...-.-...++... T Consensus 1 Ms~~~~----~s~~e---LkdyiLRrLGa--------Pii~InVtd~Qi~DcId~Alelf~EyHydG~~k~y~~~~it~~ 65 (268) T protein:vir:10 1 MSATRP----ASKTE---LKNYALRRLGY--------PAIDINVCDEQLDDLVEEAIDYFQEYHYNGSYQSMMKIEVTDA 65 (268) T ss_pred CCCCCC----CCHHH---HHHHHHHhcCC--------ceEEEecCHHHHHHHHHHHHHHhhhhhccchhcceEEEEechH Confidence 111100 01122 22222221110 123344444333300 0 111111111122122 Q ss_pred CCceeeeEEecceeecceeeeceeecceeeeeeehhhHHHHHHHHHHHHHHhcCCCceeecCCCCeE--EEEEeec-CCe Q lcl|NC_015464. 82 GGGFLGLSIPGGLVITPTEMQAMLFGGTVQGNFSMQNVYSVLANMSILDTYFTIIPNYAFNPFTNML--EFFEDIT-SEK 158 (243) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~L~~~~~~~qy~~~~d~~l~~~~~~~fN~~~~rL--~i~~d~~-~d~ 158 (243) .-+.+++++++|++.++|+++|+.++-++.|. +.+|.+++|+++++..+|+|.+++|+|+.++.+ .|.+++. ++. T Consensus 66 ~~~~g~~~t~~g~~~~~~~~~fi~~pp~v~gv--~~vf~~~~~~~~~~~n~~~~~~q~~lnd~~~~~~g~il~y~~~~~~ 143 (268) T protein:vir:10 66 IKTAAQSTTQQGSTNWYENNNYVSLPPGVLGV--NHVYTNIGASSVVPGNIFNIKYQIFLNDIYAMTHGQILHYFMTSQY 143 (268) T ss_pred HhhhhhhcccCccccccccccceecCCceeeh--hhhhhcccccccccccccccchhhhhcchhhhhHHhhhhhhhccce Confidence 22567888999999999999999988888887 688889999999999999999999999999988 5666664 455 Q ss_pred EEEEEee-c--CCCchh----------hccccchHHHHHHHHHHHHHhhhHhhhc-cccCCCcee--ecHHHHHHHHHHH Q lcl|NC_015464. 159 VLLEVRY-K--YIPEEE----------DGIYEQPWVKEYALNLCKRTWGSNIGKY-DAPLIGGIK--ANYERIIQEANTE 222 (243) Q Consensus 159 llie~~~-~--~~P~~~----------~~~yNd~WlKdYaTAL~K~~wGqnL~Kf-qgqLPGGvt--lnG~~i~~eA~~E 222 (243) |..+.|- + .++.-. ..-|...+.-+|.. ++. .+.=|...| -|-+=+-+=|..- T Consensus 144 l~~~~~~~~s~~~~~~~~~~~~~rly~d~d~~~~~~~~~~~-----------i~~~~~~dP~~~~~~YNn~WvKdYatAL 212 (268) T protein:vir:10 144 LETLDWVTNSQANRRVKFNEHQARLYLDFDWDTLQAGDFIM-----------VDLTMRQDPDEYTGMYNDAWLKDYVEAL 212 (268) T ss_pred eehhhhhhcccCccceEEEeeeceeEEeeccCCcccchhhh-----------hHhhcccCCchhhhhhhhhHHHHHHHHH Confidence 5555442 1 111100 00122222222221 111 113332211 2333344445555 Q ss_pred HHHHHHHHHhhcCC---Cccccc----------------------------C Q lcl|NC_015464. 223 LERLETVLLENYCE---PLPLLR----------------------------G 243 (243) Q Consensus 223 ie~L~eel~~~~~~---P~~~~~----------------------------G 243 (243) ++++--+.+.+++. |=++=+ | T Consensus 213 ~K~~wGq~L~K~qG~qLPGGvTlnG~~i~eeA~~E~e~L~eel~~~~~~Pp~ 264 (268) T protein:vir:10 213 FQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASQFKKDLEENIRKEYELPPM 264 (268) T ss_pred HHHHHHHHHHHhcCccCCCceeeCHHHHHHHHHHHHHHHHHHHHhhcCCCcc Confidence 55555555544443 211111 1 Done!