Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : SPC35 | Genbank acc : NC_015269

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 145

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	136	lcl\|NC_015269.1_cdsid_YP_004306619.1	HHsearch (proba=100.00%)
Portal	139	lcl\|NC_015269.1_cdsid_YP_004306622.1	HHsearch (proba=100.00%)
TermL	141	lcl\|NC_015269.1_cdsid_YP_004306624.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	135	lcl\|NC_015269.1_cdsid_YP_004306618.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	133	lcl\|NC_015269.1_cdsid_YP_004306616.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104256 protein:vir:81227 protein:vir:9643	T5 BFK20 315.1	89 % 20 % 19 %
Portal	protein:vir:104259 protein:vir:81152 protein:vir:4698	T5 Geobacillus virus E2 phiPV83	98 % 21 % 21 %
TermL	protein:vir:104262 protein:vir:9870 protein:vir:102238	T5 315.5 PBI1	100 % 23 % 22 %
Ad1	protein:vir:104255 protein:vir:1271 protein:vir:4512	T5 phi-105 V	94 % 22 % 20 %
Tc1	protein:vir:104224 protein:vir:79571 protein:vir:3428	T5 cdtI lambda	99 % 21 % 22 %