Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PAJU2 | Genbank acc : NC_011373

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 79

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	3	lcl\|NC_011373.1_cdsid_YP_002284337.1	HHsearch (proba=100.00%)
Portal	6	lcl\|NC_011373.1_cdsid_YP_002284340.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_011373.1_cdsid_YP_002284336.1	Blast (e-value=1e-128)
MTP	15	lcl\|NC_011373.1_cdsid_YP_002284349.1	Blast (e-value=2e-35)
Sheath	NOT FOUND
Ad1	8	lcl\|NC_011373.1_cdsid_YP_002284342.1	HHsearch (proba=100.00%)
Hc1	9	lcl\|NC_011373.1_cdsid_YP_002284343.1	HHsearch (proba=100.00%)
Ne1	13	lcl\|NC_011373.1_cdsid_YP_002284347.1	HHsearch (proba=100.00%)
Tc1	14	lcl\|NC_011373.1_cdsid_YP_002284348.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Hc1	5	3
Ne1<->Hc1	4	2
Tc1<->Ad1	6	4
Ne1<->Ad1	5	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:93616 protein:vir:80376 protein:vir:1433	phi 4795 phi644-2 phiE125	49 % 23 % 23 %
Portal	protein:vir:93610 protein:vir:100150 protein:vir:4454	phi 4795 phi1026b ST64B	34 % 23 % 23 %
TermL	protein:vir:1883 protein:vir:188 protein:vir:81178	HK022 HK97 Geobacillus virus E2	48 % 48 % 26 %
MTP	protein:vir:4349 protein:vir:1893 protein:vir:100241	D3 HK022 Bcep176	48 % 42 % 25 %
Ad1	protein:vir:93592 protein:vir:100103 protein:vir:4512	phi 4795 phi1026b V	30 % 28 % 27 %
Hc1	protein:vir:1890 protein:vir:4343 protein:vir:1272	HK022 D3 phi-105	55 % 40 % 31 %
Ne1	protein:vir:4347 protein:vir:1891 protein:vir:194	D3 HK022 HK97	29 % 27 % 24 %
Tc1	protein:vir:4348 protein:vir:1892 protein:vir:100242	D3 HK022 Bcep176	52 % 45 % 28 %