Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : YYZ-2008 | Genbank acc : NC_011356

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 75

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	52	lcl\|NC_011356.1_cdsid_YP_002274188.1	HHsearch (proba=100.00%)
Portal	54	lcl\|NC_011356.1_cdsid_YP_002274190.1	HHsearch (proba=100.00%)
TermL	51	lcl\|NC_011356.1_cdsid_YP_002274187.1	Blast (e-value=0)
MTP	59	lcl\|NC_011356.1_cdsid_YP_002274195.1	Blast (e-value=1e-138)
Sheath	NOT FOUND
Ad1	55	lcl\|NC_011356.1_cdsid_YP_002274191.1	HHsearch (proba=100.00%)
Hc1	56	lcl\|NC_011356.1_cdsid_YP_002274192.1	HHsearch (proba=100.00%)
Ne1	57	lcl\|NC_011356.1_cdsid_YP_002274193.1	HHsearch (proba=100.00%)
Tc1	58	lcl\|NC_011356.1_cdsid_YP_002274194.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:93616 protein:vir:80376 protein:vir:1433	phi 4795 phi644-2 phiE125	99 % 24 % 23 %
Portal	protein:vir:93610 protein:vir:100150 protein:vir:105064	phi 4795 phi1026b phiKO2	96 % 25 % 24 %
TermL	protein:vir:93598 protein:vir:100250 protein:vir:97071	phi 4795 Bcep176 OP1	98 % 57 % 48 %
MTP	protein:vir:93600 protein:vir:196 protein:vir:105771	phi 4795 HK97 ES18	89 % 69 % 23 %
Ad1	protein:vir:93592 protein:vir:100103 protein:vir:81159	phi 4795 phi1026b Geobacillus virus E2	98 % 24 % 24 %
Hc1	protein:vir:93599 protein:vir:193 protein:vir:1890	phi 4795 HK97 HK022	100 % 45 % 25 %
Ne1	protein:vir:93617 protein:vir:194 protein:vir:100243	phi 4795 HK97 Bcep176	99 % 76 % 43 %
Tc1	protein:vir:93602 protein:vir:195 protein:vir:100242	phi 4795 HK97 Bcep176	100 % 49 % 27 %