BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_011356.1_cdsid_YP_002274187.1 [gene=YYZ_gp51] [protein=putative phage terminase-like protein large subunit] [protein_id=YP_002274187.1] [location=28369..30030] (553 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: puta... 1114 0.0 gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp... 603 e-174 gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: put... 526 e-151 gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: te... 502 e-144 gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p0... 498 e-143 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 95 2e-21 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 92 1e-20 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 92 1e-20 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 92 1e-20 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 92 2e-20 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 90 5e-20 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 90 6e-20 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 90 8e-20 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 87 4e-19 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 86 1e-18 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 85 2e-18 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 84 3e-18 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 83 9e-18 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 81 3e-17 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 78 2e-16 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 74 4e-15 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 70 4e-14 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 70 8e-14 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 68 2e-13 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 61 3e-11 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 56 9e-10 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 55 2e-09 gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: pha... 53 8e-09 gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Ph... 53 9e-09 gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: ter... 52 2e-08 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 51 3e-08 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 50 5e-08 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 47 5e-07 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 47 6e-07 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 45 3e-06 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 44 4e-06 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 44 6e-06 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 43 1e-05 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 42 1e-05 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 42 2e-05 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 41 3e-05 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 40 7e-05 gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: ph... 38 2e-04 gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hyp... 38 2e-04 gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: term... 38 3e-04 gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77... 37 7e-04 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 36 0.001 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 36 0.001 gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: ph... 36 0.001 gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: te... 36 0.001 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 35 0.002 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 35 0.002 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 35 0.002 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 35 0.003 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 35 0.003 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 34 0.004 gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF... 33 0.006 gi|15673|lcl|protein:vir:1151 Length: 594 # NCBI annotation: pre... 33 0.008 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 33 0.011 gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: te... 33 0.013 gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP... 32 0.025 gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP... 32 0.025 gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP... 32 0.025 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 31 0.030 gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3... 30 0.075 gi|11877|lcl|protein:vir:79128 Length: 593 # NCBI annotation: te... 30 0.080 gi|19904|lcl|protein:vir:3781 Length: 607 # NCBI annotation: ter... 29 0.12 gi|16385|lcl|protein:vir:3744 Length: 607 # NCBI annotation: orf... 29 0.13 gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: ter... 27 0.44 gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp... 26 0.96 gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: ph... 26 0.98 gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp... 26 1.0 gi|18781|lcl|protein:vir:7429 Length: 581 # NCBI annotation: gp6... 25 1.7 gi|3950|lcl|protein:vir:103876 Length: 256 # NCBI annotation: hy... 24 4.0 gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7... 24 4.1 gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7... 24 4.2 gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unkn... 23 7.5 >gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449292;genbank:gi:157166040;goa:Q6H9U9 ;interpro:IPR001453;interpro:IPR005021;uniprot:Q6H9U9;ge nbank:GeneID:5580420 Length = 553 Score = 1114 bits (2881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 542/553 (98%), Positives = 546/553 (98%) Query: 1 MIPVWSTACPDWAERLKKGLSIIPAPIYPDQAAHALAIFKQLRIVDAPGSPTFGESCAPW 60 MIPVWSTACPDWAERLKKGLSIIPAPIYPDQAAHALAIFKQLRIVDAPGSPTFGESCA W Sbjct: 1 MIPVWSTACPDWAERLKKGLSIIPAPIYPDQAAHALAIFKQLRIVDAPGSPTFGESCAQW 60 Query: 61 VFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILA 120 VFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILA Sbjct: 61 VFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILA 120 Query: 121 PTVEVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKS 180 PTVEVAA+AFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKS Sbjct: 121 PTVEVAANAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKS 180 Query: 181 VGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARD 240 VGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARD Sbjct: 181 VGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARD 240 Query: 241 VRDGKIHDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREA 300 VRDGKIHDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREA Sbjct: 241 VRDGKIHDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREA 300 Query: 301 GEETFRGFMSKHANVEIGLALRSDRWAGADFWEEQGRCISLDDILLRADVVTVGIDGGGL 360 GEE FRGFMSKHANVEIGLALRSDRW GADFWE+QGR +SLDDIL RADVVTVGIDGGGL Sbjct: 301 GEEAFRGFMSKHANVEIGLALRSDRWTGADFWEQQGRRVSLDDILQRADVVTVGIDGGGL 360 Query: 361 DDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDLVACGDMTIVRRVGDDT 420 DDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQD VACGDMTIVRRVGDDT Sbjct: 361 DDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDFVACGDMTIVRRVGDDT 420 Query: 421 AEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDGIVVGISQGWKLGGAIKTTE 480 AEVAEYVRRIHEAELL+HIGIDPSGVGQILDSLAEAGIPDGIVVGISQGWKLGGAIKTTE Sbjct: 421 AEVAEYVRRIHEAELLEHIGIDPSGVGQILDSLAEAGIPDGIVVGISQGWKLGGAIKTTE 480 Query: 481 RKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSLMSLN 540 RKLAEGVLVHG QPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSLMSLN Sbjct: 481 RKLAEGVLVHGGQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSLMSLN 540 Query: 541 PEPKKKEYAVFFI 553 PEPKKKEYAVFFI Sbjct: 541 PEPKKKEYAVFFI 553 >gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp79 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355415;genbank:gi:77864705;genbank:GeneID :3725972 Length = 570 Score = 603 bits (1554), Expect = e-174, Method: Compositional matrix adjust. Identities = 317/552 (57%), Positives = 391/552 (70%), Gaps = 15/552 (2%) Query: 5 WSTACPDWAERLKKGLSIIPAPIYPDQAAHALAIFKQLRIVDAPGSPTFGESCAPWVFDL 64 W+TACPDW RL SIIP PI+PDQA A+AIFK+LR+ D PG PTFGE WVFD Sbjct: 3 WTTACPDWERRLIARESIIPPPIFPDQAEQAVAIFKELRVCDLPGKPTFGECSEQWVFDF 62 Query: 65 VAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVE 124 VAA+FG+YDA+TG + I+E F+LI KKN+KST+AAGIM+TA++L WR+ + ILAPT E Sbjct: 63 VAAIFGAYDAETGKQLIREFFLLISKKNTKSTIAAGIMLTAVILCWREEEEHLILAPTKE 122 Query: 125 VAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGTL 184 VA ++F PA M+R D +L +L VQ HIRTITHRV+ +LKVVAAD +TVSG KS L Sbjct: 123 VADNSFKPAAGMIRADAELSELFHVQDHIRTITHRVSRASLKVVAADTDTVSGKKSGKIL 182 Query: 185 IDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDG 244 IDE W+FGK+ AE M EA GG SR EG+V+ TTQS+EPPAGVF++KLQY RDVRDG Sbjct: 183 IDEHWVFGKRANAEAMFMEATGGQVSRDEGWVIILTTQSDEPPAGVFKEKLQYYRDVRDG 242 Query: 245 KIHDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEET 304 KI D L V++E P EMV+S A+L N + NPNLG SV +L + K R + + Sbjct: 243 KIVDRKSLGVLYEFPEEMVKSKAYLDPANYYITNPNLGRSVSAEWLEDQLNKIRTKTDGS 302 Query: 305 FRGFMSKHANVEIGLALRSDRWAGADFWEEQG--RCISLDDILLRADVVTVGIDGGGLDD 362 F+ F++KH NVEIG+ LRSDRWAGADFW G ++L D++ + +V+ GIDGGGLDD Sbjct: 303 FQQFIAKHLNVEIGMNLRSDRWAGADFWINAGLPERVTLLDLIEQCEVIAAGIDGGGLDD 362 Query: 363 LLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDLVACGDMTIVRRVGDDTAE 422 LLG+ +GR R R WL W HAWAH + + RRK A D GD+TIV R+G+D + Sbjct: 363 LLGLSAVGRVRGGRNWLAWAHAWAHPSVLERRKEIAPALHDFEKAGDLTIVSRIGEDVVQ 422 Query: 423 VAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDGIVVGISQGWKLGGAIKTTERK 482 AEYV RI A LL G+DP+G+G ILD+LA A +P+ V+GISQGWKL GAIKTTER+ Sbjct: 423 AAEYVARIERAGLLYKAGVDPAGIGAILDALAAARVPEDKVIGISQGWKLSGAIKTTERR 482 Query: 483 LA-------------EGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMA 529 +A +G L HG QPL+ W VGNARV P GNA+ ITKQ SG KIDPLMA Sbjct: 483 IAAASGQRIEGDEAPDGALYHGGQPLLTWAVGNARVVPVGNAVNITKQVSGTAKIDPLMA 542 Query: 530 LFNAVSLMSLNP 541 LFNAVSLM+LNP Sbjct: 543 LFNAVSLMALNP 554 >gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453562;genbank:gi:84662597;genbank:GeneID :5142486 Length = 561 Score = 526 bits (1354), Expect = e-151, Method: Compositional matrix adjust. Identities = 268/546 (49%), Positives = 376/546 (68%), Gaps = 6/546 (1%) Query: 3 PVWSTACPDWAERLKKGLSIIPAPIYPDQAAHALAIFKQLRIVDAPGSPTFGESCAPWVF 62 P ++TA PDWA L+KG S++P PIYP+QAA A+++F +LR VD PGSPT GE PW+ Sbjct: 4 PEYTTAMPDWAYLLEKGQSLVPPPIYPEQAALAMSVFTRLRAVDVPGSPTLGECSPPWIL 63 Query: 63 DLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPT 122 D V +FG+YDA TG +KE+F+L+PKK++KS+LA+GIM+TAL++ WR++A Y I++PT Sbjct: 64 DFVRYVFGAYDADTGNNLLKELFLLVPKKSAKSSLASGIMLTALIIGWRKSASYIIISPT 123 Query: 123 VEVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVG 182 +E+A ++F PA D VR D +L L QV H RTIT+RVT LKV+AA +TV+G K+ Sbjct: 124 IEIAGNSFKPAADSVRADPELSKLLQVSAHTRTITNRVTGAVLKVLAAAEDTVTGSKASV 183 Query: 183 TLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVR 242 LIDEL L G + MLREA GGLA+RPEGFV+ TTQS++ PAGVF+ L R+VR Sbjct: 184 LLIDELHLMGLKENGSSMLREAAGGLAARPEGFVLKLTTQSSQAPAGVFKSDLDLFRNVR 243 Query: 243 DGKIHDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGE 302 DG + D +++EHP ++ G +E + +VNP+LGYSVD +L Y KA+ G Sbjct: 244 DGIVVDKRRFGLLYEHPKSWIDDGRAQTLEGIELVNPSLGYSVDRNYLEDSYNKAKAVGG 303 Query: 303 ETFRGFMSKHANVEIGLALRSDRWAGADFWEEQGR-CISLDDILLRADVVTVGIDGGGLD 361 F++KHAN+EIG+ LR+DR+AG+DFW++ ++LD ++ R +V VGIDGGGLD Sbjct: 304 GELLDFLAKHANIEIGMNLRNDRFAGSDFWQQNSDPTLNLDSLIERCEVAVVGIDGGGLD 363 Query: 362 DLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDLVACGDMTIVRRVGDDTA 421 DLLG+ V+GR ++TR+WL W + W H A+ R K ASR +D G++TIV G D Sbjct: 364 DLLGLSVVGRCKKTRKWLSWSYGWCHSIALERVKQNASRLRDFEKAGELTIVDLPGQDVQ 423 Query: 422 EVAEYVRRIHEAELL---DHIGIDPSGVGQILDSLA--EAGIPDGIVVGISQGWKLGGAI 476 E+ + V ++ ++ LL + IG+D +G+ I+D L E GI G ++ + QG++L GAI Sbjct: 424 ELCDIVLKLEKSGLLPEKNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLSGAI 483 Query: 477 KTTERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSL 536 KT ER LA L+H DQ +M W +GN +VE KG+A+ TK A+G+ K+D ALFNA+SL Sbjct: 484 KTCERALAGNTLIHADQDIMTWNIGNLKVELKGSALYSTKAAAGKAKVDLAHALFNAISL 543 Query: 537 MSLNPE 542 +SLNP Sbjct: 544 ISLNPS 549 >gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858953;genbank:gi:32128418;genbank:GeneID :2648405 Length = 561 Score = 502 bits (1292), Expect = e-144, Method: Compositional matrix adjust. Identities = 261/546 (47%), Positives = 369/546 (67%), Gaps = 6/546 (1%) Query: 2 IPVWSTACPDWAERLKKGLSIIPAPIYPDQAAHALAIFKQLRIVDAPGSPTFGESCAPWV 61 +P +ST+ PDW RL++GLS+IP PI+P QA A+++F +L+ VD G PT+GE PWV Sbjct: 3 VPEYSTSVPDWETRLEQGLSLIPPPIFPAQAELAMSVFSRLKAVDVAGQPTYGECSPPWV 62 Query: 62 FDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAP 121 D V +FGSY+A+TG IKE F L+PKK+SKS++A+G+M+T L++ WR++A Y I+AP Sbjct: 63 LDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIVAP 122 Query: 122 TVEVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSV 181 T+EVA +F PA D VR D L L + TH RT+T+RV+ LKV+AAD N+V+G K+ Sbjct: 123 TIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGSKAS 182 Query: 182 GTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDV 241 L+DE G + A MLREA GGLA+RPEGF++ +TQ++EPPAGVF+ L R + Sbjct: 183 VLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFRSI 242 Query: 242 RDGKIHDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAG 301 RDG + D V++EHP +E G + +E + +VNP+LGYSVD +L Y +A+ G Sbjct: 243 RDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKNIG 302 Query: 302 EETFRGFMSKHANVEIGLALRSDRWAGADFWEEQGR-CISLDDILLRADVVTVGIDGGGL 360 +++KHANV+IG+ LR+DR+AGADFW + ++LD ++ R +V VGIDGGGL Sbjct: 303 GGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDTLIERCEVAVVGIDGGGL 362 Query: 361 DDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDLVACGDMTIVRRVGDDT 420 DDLLG+ V+GR ++TR+WL W + W H A+ R K ASR +D G++TIV G D Sbjct: 363 DDLLGLSVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRLRDFEKAGELTIVDLPGQDV 422 Query: 421 AEVAEYVRRIHEAELL---DHIGIDPSGVGQILDSLA--EAGIPDGIVVGISQGWKLGGA 475 E+ E V ++ ++ LL + IG+D +G+ I+D L E GI G ++ + QG++L GA Sbjct: 423 QELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLSGA 482 Query: 476 IKTTERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVS 535 IKT ER LA L H DQ +M W + N +VE KG+A+ TK A+G+ K+D ALFNA+S Sbjct: 483 IKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAIS 542 Query: 536 LMSLNP 541 L+SLNP Sbjct: 543 LISLNP 548 >gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p06 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285676;genbank:gi:148727184;genbank:Ge neID:5247118 Length = 569 Score = 498 bits (1282), Expect = e-143, Method: Compositional matrix adjust. Identities = 261/546 (47%), Positives = 367/546 (67%), Gaps = 6/546 (1%) Query: 2 IPVWSTACPDWAERLKKGLSIIPAPIYPDQAAHALAIFKQLRIVDAPGSPTFGESCAPWV 61 +P +STA PDW RL++GLS+IP PI+P+QA +++F +LR VD G PT+GE PWV Sbjct: 11 VPEYSTAVPDWETRLEEGLSLIPPPIFPEQAELMMSVFTRLRAVDVAGQPTYGECSPPWV 70 Query: 62 FDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAP 121 D +FGSY+A TG IKE F L+PKK+SKS++A+G+M+T L+ WR++A Y I+AP Sbjct: 71 LDFCRYVFGSYNADTGHNLIKEFFCLVPKKSSKSSIASGVMLTMLITGWRKSATYMIVAP 130 Query: 122 TVEVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSV 181 T+EVA +F PA D VR D L L Q+ H +T+T+RV+ LK+VAAD NTV+G K+ Sbjct: 131 TIEVAQASFKPAADSVRADPQLSKLIQISAHTKTLTNRVSGAVLKIVAADENTVTGSKAS 190 Query: 182 GTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDV 241 L+DE G + MLREA GGLA+RPEGF++ +TQS+EPPAGVF+ L+ R+V Sbjct: 191 VLLVDECHRLGTKENGGSMLREAAGGLAARPEGFIIKLSTQSSEPPAGVFKDDLELFRNV 250 Query: 242 RDGKIHDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAG 301 RDG + D V++EHP +E G + +E + +VNP+LGYSVD +L Y +A+ G Sbjct: 251 RDGVVTDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKNIG 310 Query: 302 EETFRGFMSKHANVEIGLALRSDRWAGADFWEEQGR-CISLDDILLRADVVTVGIDGGGL 360 +++KHANV+IG+ LR+DR+AGADFW + ++LD ++ R +V VGIDGGGL Sbjct: 311 GGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADPSLTLDTLIDRCEVAVVGIDGGGL 370 Query: 361 DDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDLVACGDMTIVRRVGDDT 420 DDLLG+ V+GR ++TR+WL W + W H A+ R K ASR +D G++TIV G D Sbjct: 371 DDLLGLSVVGRCKKTRKWLSWSYGWCHSIALERVKQNASRLRDFEKAGELTIVDLPGQDV 430 Query: 421 AEVAEYVRRIHEAELL---DHIGIDPSGVGQILDSLA--EAGIPDGIVVGISQGWKLGGA 475 E+ + V ++ ++ LL + IG+D +G+ I+D L E GI G ++ + QG++L GA Sbjct: 431 QELCDIVLKLEKSGLLPEKNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLSGA 490 Query: 476 IKTTERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVS 535 IKT ER LA L H DQ +M W + N +VE KG+A+ TK A+G+ K+D ALFNA+S Sbjct: 491 IKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAIS 550 Query: 536 LMSLNP 541 L+SLNP Sbjct: 551 LISLNP 556 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 117/497 (23%), Positives = 194/497 (39%), Gaps = 40/497 (8%) Query: 59 PWVFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTI 118 PW + ++FG + R +E +I + +KN KS AAG+ + + +A Sbjct: 82 PWQSFIFCSIFGWVTKKDKKRRFREAYIRVARKNGKSFFAAGVGIYTFCADGENSAEVYC 141 Query: 119 LAPTVEVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGI 178 A T+ A F PAR M R L + ++T R + +A P G Sbjct: 142 GATTMAQAKKVFTPARQMASRLPALRSRFDISVWTDSLT-RPDGSVFAPMAGKPG--DGD 198 Query: 179 KSVGTLIDELWLFGKQYKAEDMLREAIG-GLASRPEGFVVYTTTQSNEPPAGVFRQKLQY 237 +IDE + E M +G G S+P ++ T S E P K + Sbjct: 199 SPHCAIIDEYHEHDTDHMYEAM---TMGMGARSQPLTLIITTAGSSLESPC---YDKDKE 252 Query: 238 ARDVRDGKIHDPHFLPVIFEHPPEMVESGAHLL-MENLAMVNPNLGYSVDEAFLYREYRK 296 ++ +G + +I+E ++ G +NL NPNL SV + L Sbjct: 253 VKEAIEGITCNERLFGMIYE-----LDVGDDWTDPKNLIKANPNLNVSVKYSDLVELLEV 307 Query: 297 AREAGEETFRGFMSKHANVEI---GLALRSDRWAGADFWEEQGRCISLDDILLRADVVTV 353 A++ + F +K N+ + ++W A + + + L+D D V Sbjct: 308 AKQVPRKV-NAFKTKRLNIWVSGKSAFYNMEQWKAA-----EDKNLKLED--FANDTCNV 359 Query: 354 GID-GGGLDDLLGMYVIGRDRETRE--WLGWGHAWAHE----TAVVRRKSEASRFQDLVA 406 G+D LD G+ + R+ E + + W E T + A R+Q Sbjct: 360 GLDLAKKLDMNAGIRLFTREIEGKRHYYCIKPKFWVPEDTIHTTDPKLLKTADRYQKFYE 419 Query: 407 CGDMTIVRRVGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDGIVVGI 466 G + D E+ + + +D I IDP+G + L + G VV I Sbjct: 420 MGALEATDGAEADYREILASILDMQGENRIDEIDIDPAGATALRHQLEDYGF---TVVDI 476 Query: 467 SQGW-KLGGAIKTTERKLAEGVLVHGDQPLMAWCVGN--ARVEPKGNAILITKQASGRGK 523 Q + + A+K E LA G H P++ WC+ N + P + ++ + + K Sbjct: 477 RQDYTNMSPAMKELEAALAGGRFHHDGNPILTWCISNVIGKFIPGSDDLVRPTKGDNQSK 536 Query: 524 IDPLMALFNAVSLMSLN 540 ID ALFNA++ LN Sbjct: 537 IDGATALFNAMTRAMLN 553 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 92.4 bits (228), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 111/518 (21%), Positives = 218/518 (42%), Gaps = 39/518 (7%) Query: 27 IYPDQAAHALAIFKQLRIVDAPGSPTFGES----CAPWVFDLVAALFGSYDAQTGVRHIK 82 ++ ++ AH + +R ++ P+ G PW ++ +LFG +T +R K Sbjct: 51 VFDEELAH-----RPIRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFK 105 Query: 83 EVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAAHAFNPARDMVRRDDD 142 E I + +KN K+T +G+ A+ + A +LA ++ A F+ ++ M++ Sbjct: 106 EALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPK 165 Query: 143 LDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQYKAEDMLR 202 LD +T I + T + + A+D + + G+ + + DE+ F K YK +++ Sbjct: 166 LDK--NFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEF-KDYKLISVIK 222 Query: 203 EAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPVIFEHPPEM 262 + A+R + ++Y TT + G ++ RD D I D F + + Sbjct: 223 NS---RAARLQPLLIYITTAGYQLD-GPLVDMVEAGRDTLDQIIEDER----TFYYLASL 274 Query: 263 VESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRG-FMSKHANVEIGLAL 321 + N NPNLG S++ + E+ KA+ E RG F++K N+ Sbjct: 275 DDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAE--RGDFITKRFNI----FA 328 Query: 322 RSDRWAGADF--WEEQGRCISLDDILLRADVVTVGIDGGGLDDLL-GMYVIGRDRETREW 378 +D + D+ ++ +SL+++ R T+G D +D D Sbjct: 329 NNDEMSFIDYPTLQKNNEIVSLEELEGRP--CTIGYDLSETEDFTAACATFALDNGKVAV 386 Query: 379 LGWGHAWAHETAVVRRKSEASRFQDLVACGDMTIVRRVGDDTAEVAEYVRRIHEAELLDH 438 L H+W + V +E +++ G +T+ + D +V ++ +++E +++ Sbjct: 387 L--SHSWIPKHK-VEYSNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEK 443 Query: 439 IGIDPSGVGQILDSLAEAGIPDGIVVGISQG-WKLGGAIKTTERKLAEGVLVHGDQPLMA 497 I D + ++ L G QG L A+K + +G ++ + PLM Sbjct: 444 ITYDRANAFKLNQELKNYGFE---TEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMK 500 Query: 498 WCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVS 535 W + N +++ N + + S KID A N + Sbjct: 501 WYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYT 538 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 92.4 bits (228), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 111/518 (21%), Positives = 218/518 (42%), Gaps = 39/518 (7%) Query: 27 IYPDQAAHALAIFKQLRIVDAPGSPTFGES----CAPWVFDLVAALFGSYDAQTGVRHIK 82 ++ ++ AH + +R ++ P+ G PW ++ +LFG +T +R K Sbjct: 51 VFDEELAH-----RPIRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFK 105 Query: 83 EVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAAHAFNPARDMVRRDDD 142 E I + +KN K+T +G+ A+ + A +LA ++ A F+ ++ M++ Sbjct: 106 EALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPK 165 Query: 143 LDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQYKAEDMLR 202 LD +T I + T + + A+D + + G+ + + DE+ F K YK +++ Sbjct: 166 LDK--NFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEF-KDYKLISVIK 222 Query: 203 EAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPVIFEHPPEM 262 + A+R + ++Y TT + G ++ RD D I D F + + Sbjct: 223 NS---RAARLQPLLIYITTAGYQLD-GPLVDMVEAGRDTLDQIIEDER----TFYYLASL 274 Query: 263 VESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRG-FMSKHANVEIGLAL 321 + N NPNLG S++ + E+ KA+ E RG F++K N+ Sbjct: 275 DDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAE--RGDFITKRFNI----FA 328 Query: 322 RSDRWAGADF--WEEQGRCISLDDILLRADVVTVGIDGGGLDDLL-GMYVIGRDRETREW 378 +D + D+ ++ +SL+++ R T+G D +D D Sbjct: 329 NNDEMSFIDYPTLQKNNEIVSLEELEGRP--CTIGYDLSETEDFTAACATFALDNGKVAV 386 Query: 379 LGWGHAWAHETAVVRRKSEASRFQDLVACGDMTIVRRVGDDTAEVAEYVRRIHEAELLDH 438 L H+W + V +E +++ G +T+ + D +V ++ +++E +++ Sbjct: 387 L--SHSWIPKHK-VEYSNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEK 443 Query: 439 IGIDPSGVGQILDSLAEAGIPDGIVVGISQG-WKLGGAIKTTERKLAEGVLVHGDQPLMA 497 I D + ++ L G QG L A+K + +G ++ + PLM Sbjct: 444 ITYDRANAFKLNQELKNYGFE---TEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMK 500 Query: 498 WCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVS 535 W + N +++ N + + S KID A N + Sbjct: 501 WYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYT 538 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 92.4 bits (228), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 111/518 (21%), Positives = 218/518 (42%), Gaps = 39/518 (7%) Query: 27 IYPDQAAHALAIFKQLRIVDAPGSPTFGES----CAPWVFDLVAALFGSYDAQTGVRHIK 82 ++ ++ AH + +R ++ P+ G PW ++ +LFG +T +R K Sbjct: 51 VFDEELAH-----RPIRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFK 105 Query: 83 EVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAAHAFNPARDMVRRDDD 142 E I + +KN K+T +G+ A+ + A +LA ++ A F+ ++ M++ Sbjct: 106 EALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPK 165 Query: 143 LDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQYKAEDMLR 202 LD +T I + T + + A+D + + G+ + + DE+ F K YK +++ Sbjct: 166 LDK--NFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEF-KDYKLISVIK 222 Query: 203 EAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPVIFEHPPEM 262 + A+R + ++Y TT + G ++ RD D I D F + + Sbjct: 223 NS---RAARLQPLLIYITTAGYQLD-GPLVDMVEAGRDTLDQIIEDER----TFYYLASL 274 Query: 263 VESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRG-FMSKHANVEIGLAL 321 + N NPNLG S++ + E+ KA+ E RG F++K N+ Sbjct: 275 DDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAE--RGDFITKRFNI----FA 328 Query: 322 RSDRWAGADF--WEEQGRCISLDDILLRADVVTVGIDGGGLDDLL-GMYVIGRDRETREW 378 +D + D+ ++ +SL+++ R T+G D +D D Sbjct: 329 NNDEMSFIDYPTLQKNNEIVSLEELEGRP--CTIGYDLSETEDFTAACATFALDNGKVAV 386 Query: 379 LGWGHAWAHETAVVRRKSEASRFQDLVACGDMTIVRRVGDDTAEVAEYVRRIHEAELLDH 438 L H+W + V +E +++ G +T+ + D +V ++ +++E +++ Sbjct: 387 L--SHSWIPKHK-VEYSNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEK 443 Query: 439 IGIDPSGVGQILDSLAEAGIPDGIVVGISQG-WKLGGAIKTTERKLAEGVLVHGDQPLMA 497 I D + ++ L G QG L A+K + +G ++ + PLM Sbjct: 444 ITYDRANAFKLNQELKNYGFE---TEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMK 500 Query: 498 WCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVS 535 W + N +++ N + + S KID A N + Sbjct: 501 WYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYT 538 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 92.0 bits (227), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 113/518 (21%), Positives = 217/518 (41%), Gaps = 39/518 (7%) Query: 27 IYPDQAAHALAIFKQLRIVDAPGSPTFGES----CAPWVFDLVAALFGSYDAQTGVRHIK 82 ++ ++ AH + +R ++ P+ G PW ++ +LFG +T +R K Sbjct: 51 VFDEELAH-----RPIRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFK 105 Query: 83 EVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAAHAFNPARDMVRRDDD 142 E I + +KN K+T +G+ A+ + A +LA ++ A F+ ++ M++ Sbjct: 106 EALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPK 165 Query: 143 LDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQYKAEDMLR 202 L + + I + T + + A+D + + G+ + + DE+ F K YK +++ Sbjct: 166 LRE--NFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEF-KDYKLISVIK 222 Query: 203 EAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPVIFEHPPEM 262 + A+R + ++Y TT + G ++ RD D I D F + + Sbjct: 223 NS---RAARLQPLLIYITTAGYQLD-GPLVDMVEAGRDTLDQIIEDER----TFYYLASL 274 Query: 263 VESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRG-FMSKHANVEIGLAL 321 + N NPNLG S+D + E+ KA+ E RG F++K N+ Sbjct: 275 DDDDDINDSSNWIKANPNLGVSIDLDEMKEEWEKAKRTPAE--RGDFITKRFNI----FA 328 Query: 322 RSDRWAGADF--WEEQGRCISLDDILLRADVVTVGIDGGGLDDLL-GMYVIGRDRETREW 378 +D + D+ ++ ISLD++ R T+G D +D D Sbjct: 329 NNDEMSFIDYPTLQKNNEIISLDELEGRP--CTIGYDLSETEDFTAACATFALDNGKVAV 386 Query: 379 LGWGHAWAHETAVVRRKSEASRFQDLVACGDMTIVRRVGDDTAEVAEYVRRIHEAELLDH 438 L H+W + V +E +++ G +TI + D +V ++ +++E +++ Sbjct: 387 L--THSWIPKHK-VEYSNEKIPYREWEEDGLLTIQDKPYIDYQDVLNWIIKMNEHYVVEK 443 Query: 439 IGIDPSGVGQILDSLAEAGIPDGIVVGISQG-WKLGGAIKTTERKLAEGVLVHGDQPLMA 497 I D + ++ L G QG L A+K + +G ++ + PLM Sbjct: 444 ITYDRANAFKLNQELKNYGFE---TEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMK 500 Query: 498 WCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVS 535 W + N +++ N + + S KID A N + Sbjct: 501 WYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYT 538 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 90.1 bits (222), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 113/498 (22%), Positives = 192/498 (38%), Gaps = 52/498 (10%) Query: 59 PWVFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTI 118 PW +V FG T +R +EV+ IP+KN KS ++AG+ + + A Sbjct: 86 PWQLFIVCCAFGWVQKGTKLRRFREVYTEIPRKNGKSAISAGVALYCFTCDNEFGAEVYS 145 Query: 119 LAPTVEVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGI 178 A T + A F PAR M +R L + ++ + + + + +P G Sbjct: 146 GATTEKQAWEVFRPARLMCKRTPLLVEAFGIEVNASNLNRPEDGARFEPLIGNPG--DGA 203 Query: 179 KSVGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYA 238 ++DE ++ + + + G+ +R + + TT + ++ + Sbjct: 204 SPHCAIVDEY----HEHPTDALYTTMLTGMGARRQPLMWAITTAGYNIEGPCYDKRREVI 259 Query: 239 RDVRDGKIHDPHFLPVIFEHPPEMVESGAHLLMEN-LAMVNPNLGYSVDEAFLY----RE 293 ++ +G + + VI+ V+ G L NPN+G SV FL R Sbjct: 260 -EMLNGSVPNNELFGVIY-----TVDEGDDWTDPKVLEKANPNIGVSVYRDFLLSQQQRA 313 Query: 294 YRKAREAGEETFRGFMSKHANVEIG-----LALRS-----DRWAGADFWEEQGRCISLD- 342 AR AG F +KH NV + L S D+ + +E Q ++ D Sbjct: 314 INNARHAGV-----FKTKHLNVWVAARTAFFNLVSWQNCEDKTLTLELFEGQPCVLAFDL 368 Query: 343 ----DILLRADVVTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEA 398 D+ A + T IDG Y + R W+ + ++ E RR +E Sbjct: 369 ARKLDMNSMARLFTREIDGK-----THFYSVA----PRFWVPYDTVYSVEKNEDRRTAE- 418 Query: 399 SRFQDLVACGDMTIVRRVGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGI 458 RFQ V G +T+ D + E + ++ + IDP G + LA+ + Sbjct: 419 -RFQKWVEMGFLTVTDGAEVDYRYILEEAKAANKLNPVSESPIDPFGATGLSHDLADENL 477 Query: 459 PDGIVVGISQGWKLGGAIKTTERKLAEGVLVHGDQPLMAWCVGN--ARVEPKGNAILITK 516 V I + +K E + G H P+M WC+GN + P + ++ Sbjct: 478 --NPVTIIQNYTNMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKTIPGNDDVVKPI 535 Query: 517 QASGRGKIDPLMALFNAV 534 + KID +AL AV Sbjct: 536 KEQAENKIDGAVALIMAV 553 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 90.1 bits (222), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 113/518 (21%), Positives = 216/518 (41%), Gaps = 39/518 (7%) Query: 27 IYPDQAAHALAIFKQLRIVDAPGSPTFGES----CAPWVFDLVAALFGSYDAQTGVRHIK 82 ++ ++ AH + +R ++ P+ G PW ++ +LFG +T +R K Sbjct: 51 VFDEELAH-----RPIRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFK 105 Query: 83 EVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAAHAFNPARDMVRRDDD 142 E I + +KN K+T +G+ A+ + A +LA ++ A F+ ++ M++ Sbjct: 106 EALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPK 165 Query: 143 LDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQYKAEDMLR 202 L + + I + T + + A+D + + G+ + + DE+ F K YK +++ Sbjct: 166 LRE--NFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEF-KDYKLISVIK 222 Query: 203 EAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPVIFEHPPEM 262 + A+R + ++Y TT + G ++ RD D I D F + + Sbjct: 223 NS---RAARLQPLLIYITTAGYQLD-GPLVNMVEAGRDTLDRIIEDER----TFYYLASL 274 Query: 263 VESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRG-FMSKHANVEIGLAL 321 + N NPNLG S+D + E+ KA+ +E RG F++K N+ Sbjct: 275 DDDDDINDSSNWIKANPNLGVSIDLDEMKEEWEKAKRTPDE--RGDFITKRFNI----FA 328 Query: 322 RSDRWAGADF--WEEQGRCISLDDILLRADVVTVGIDGGGLDDLL-GMYVIGRDRETREW 378 +D + D+ ++ ISLD++ R T+G D +D D Sbjct: 329 NNDEMSFIDYPTLQKNNDIISLDELEGRP--CTIGYDLSETEDFTAACATFALDNGKVAV 386 Query: 379 LGWGHAWAHETAVVRRKSEASRFQDLVACGDMTIVRRVGDDTAEVAEYVRRIHEAELLDH 438 L H+W + V +E + + G +TI D +V ++ +++E +++ Sbjct: 387 L--THSWIPKHK-VEYSNEKIPYIEWEEDGLLTIQDNPYIDYQDVLNWIIKMNEHYVVEK 443 Query: 439 IGIDPSGVGQILDSLAEAGIPDGIVVGISQG-WKLGGAIKTTERKLAEGVLVHGDQPLMA 497 I D + ++ L G QG L A+K + +G ++ + PLM Sbjct: 444 ITYDRANAFKLNQELKNYGFE---TEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMK 500 Query: 498 WCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVS 535 W + N +++ N + + S KID A N + Sbjct: 501 WYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYT 538 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 89.7 bits (221), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 107/524 (20%), Positives = 219/524 (41%), Gaps = 35/524 (6%) Query: 30 DQAAHALAIFKQLRIVDAPGSPTFGESCAPWVFD--LVAALFGSYDAQTGVRHIKEVFIL 87 ++A ++ F+ LR D + G+ + F +V ++FG TG R K+ ++ Sbjct: 49 EKALESIDFFEDLRFTDGEIA---GQQVKLFGFQDFIVGSIFGWVCKGTGYRRFKKSYVQ 105 Query: 88 IPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAAHAFNPARDMVRRDDDLDDLC 147 + +KN+KS L +GI + + A A ++ A + AR + + DL ++ Sbjct: 106 LARKNAKSLLNSGIGIKLAAFDKYPNAQVYCTATKMKQARIVWKQARKFIEIEPDLREIF 165 Query: 148 QVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQYKAEDMLREAIGG 207 +++ H I + + + D T+ G G +IDE +K M++ G Sbjct: 166 KIKDHDAIIESLINGGEIMALGRDTGTIDGFDPHGGIIDEY----HSHKTNQMVKLLEDG 221 Query: 208 LASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKI-HDPHFLPVIFEHPPEMVESG 266 ++ E + TT +++ +Y ++V +G + +D +F+ + + + Sbjct: 222 SVNQAESLISIITTAGFNLNGPCYKE-WEYCKNVLEGIVNNDEYFIYIAQMDVEDDIWDP 280 Query: 267 AHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRGFMSKHANVEIGLALRSDRW 326 + L N + G L R ++++ G + + F++K N I +D++ Sbjct: 281 NNWLKANPLVAKLPKGLEN----LKRFAEESKQKGGDDLKNFLTKSLN--IWYEFSNDQY 334 Query: 327 AGADFWEEQGRCISLDDILLRADVVTVGID---GGGLDDLLGMYVIGRDRETREWLGWGH 383 G W+ ++L++ + G+D GG L L ++ ++E E + Sbjct: 335 IGPSVWKVGASKLTLEN--FKGKTCYAGLDLSSGGDLTSLALIFPYEFEKENGEKVRKYF 392 Query: 384 AWAHETAVVRRKSEASRFQDL-----VACGDMTIVRRVG---DDTAEVAEYVRRIHEAEL 435 +H RR +E + D+ + G +T+ +G D + +Y+R + E Sbjct: 393 IHSHSFIPKRRVAEHIQSDDVPYDVWIENGLLTVTETLGGIKTDYKYIIKYLRDLIEEFQ 452 Query: 436 LD--HIGIDPSGVGQILDSLAEAGIPDGIVVGISQGWKLGGAIKTTERKLAEGVLVHGDQ 493 L +G DP L L E G D + + S W L + + + G + + ++ Sbjct: 453 LKIIQLGYDPHNADTFLQDLEELGF-DCVEIFQSCKW-LNDPTEDFKLECEAGNIEYNEE 510 Query: 494 -PLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSL 536 L++W V NA++ N + + +IDP+ A+ +A L Sbjct: 511 NELLSWSVVNAKLVSNSNGEIKIDKNLQEKRIDPVDAVIDAYKL 554 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 87.4 bits (215), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 106/500 (21%), Positives = 197/500 (39%), Gaps = 47/500 (9%) Query: 59 PWVFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTI 118 PW + +FG ++G+R +E + IP+KN KS ++AG+ + + A Sbjct: 80 PWQLFCICVVFGWVRKKSGLRRFREAYNEIPRKNGKSAMSAGVGLYMFACDDEFGAEVYS 139 Query: 119 LAPTVEVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGI 178 A T + A F PAR M +R + L + ++ H ++++ + + DP G Sbjct: 140 GATTEKQAWEVFRPARLMAQRTEPLREAFGIEVHAQSMSRPEDGARFEPLIGDPG--DGA 197 Query: 179 KSVGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYA 238 LIDE +++ + + + G+ +R + + TT + ++ + Sbjct: 198 SPSCALIDEY----HEHQTDALYQTMQTGMGARRQPLIFGITTAGYNIEGPCYDKRREVI 253 Query: 239 RDVRDGKIHDPHFLPVIFEHPPEMVESGAHLLMEN-LAMVNPNLGYSVDEAFLYREYRKA 297 ++ +G + + +I+ ++ G L NPN+G SV +L + R A Sbjct: 254 -EMLEGIVPNDELFGIIY-----TIDDGDDWTDPAVLRKANPNMGISVYSDYLLSQQRAA 307 Query: 298 ----REAGEETFRGFMSKHANVEIGLALRSDRWAGADFWEE-QGRCISLDDILLRADVVT 352 R+ G F +KH N+ + D + W++ + R ++L+ Sbjct: 308 INNPRKVGV-----FKTKHLNIWVAA---KDAFFNLVNWQKCEDRSLTLE--RFEGHTCI 357 Query: 353 VGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWA--------HET---AVVRRKSEASRF 401 + D DL M + TRE G H + ++T A V A R+ Sbjct: 358 LAFDLARKLDLNAMVRLF----TREIDGKTHYYCVAPKFFVPYDTIYSADVTDSRTAERY 413 Query: 402 QDLVACGDMTIVRRVGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDG 461 Q V G +T+ D E+ E + + ++ IDP G + LA+ + Sbjct: 414 QKWVEGGFITVTDGAEIDYREILESAKEANRLNAVEESPIDPHGATNLSHHLADENL--N 471 Query: 462 IVVGISQGWKLGGAIKTTERKLAEGVLVHGDQPLMAWCVGN--ARVEPKGNAILITKQAS 519 + I + +K E + G H P+M WC+ N + P + ++ + Sbjct: 472 PITIIQNYTNMSDPMKELEAAIEAGRFHHDGNPVMTWCISNVIGKHIPGDDDVVRPIKQG 531 Query: 520 GRGKIDPLMALFNAVSLMSL 539 KID +AL A+ L Sbjct: 532 NENKIDGAVALIMAIGRCML 551 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 85.9 bits (211), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 107/532 (20%), Positives = 212/532 (39%), Gaps = 50/532 (9%) Query: 11 DWAERLKKGLSIIPAPIYPDQAAHALAIFKQLRIVDAPGSPTFGESCAPWVFDLVAALFG 70 D AER+ K + ++P FK++ I + PW ++ FG Sbjct: 56 DLAERVAKFIQLLPH-------TKGEWAFKRMPI-----------TLEPWQLFVICCAFG 97 Query: 71 SYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAAHAF 130 + + +R +EV+ IP+KN KS ++AG+ + + A A T + A F Sbjct: 98 WVNKGSRLRRFREVYTEIPRKNGKSAISAGVALYCFACDNEFGAEVYSGATTEKQAWEVF 157 Query: 131 NPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWL 190 PAR M +R L + ++ + + + + +P G ++DE Sbjct: 158 RPARLMCKRTPMLTEAFGIEVNASNMNRPEDGARFEPLIGNPG--DGSSPHCAVVDEY-- 213 Query: 191 FGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPH 250 ++ + + + G+ +R + + TT + ++ + ++ +G + + Sbjct: 214 --HEHATDALYTTMLTGMGARRQPLMWAITTAGYNIEGPCYDKRREVI-EMLNGSVPNDE 270 Query: 251 FLPVIFEHPPEMVESGAHLL-MENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRGFM 309 +I+ V+ G + L NPN+G SV FL + ++A+ F Sbjct: 271 LFGIIY-----TVDEGDDWTDPQVLEKANPNIGVSVYREFLLSQQQRAKNNARLA-NVFK 324 Query: 310 SKHANVEIGLALRSDRWAGADFWEEQGRCISLDDILLRADVVTVGIDGG-GLDDLLGMYV 368 +KH N I ++ RS + + + + ++L+ + ++ + ++ + +Y Sbjct: 325 TKHLN--IWVSARSAYFNLVSWQSCEDKSLTLEQFEGQPCILAFDLARKLDMNSMARLYT 382 Query: 369 IGRDRET-------REWLGWGHAWAHETAVVRRKSEASRFQDLVACGDMTIVRRVGDDTA 421 D +T R W+ + ++ E RR +E RFQ V G +T+ D Sbjct: 383 REIDGKTHYYSVAPRFWVPYDTVYSVEKNEDRRTAE--RFQKWVEMGVLTVTDGAEVDYR 440 Query: 422 EVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGI-PDGIVVGISQGWKLGGAIKTTE 480 + E + ++ + IDP G + LA+ + P IV + + +K E Sbjct: 441 YILEEAKAANKISPVSESPIDPFGATGLSHDLADEDLNPVTIVQNFAN---MSDPMKELE 497 Query: 481 RKLAEGVLVHGDQPLMAWCVGN--ARVEPKGNAILITKQASGRGKIDPLMAL 530 + G H P+M WC+GN + P + ++ + KID +AL Sbjct: 498 AAIESGRFHHDGNPIMTWCIGNVVGKNMPGNDDLVKPVKEQAENKIDGAVAL 549 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 85.1 bits (209), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 108/488 (22%), Positives = 197/488 (40%), Gaps = 35/488 (7%) Query: 59 PWVFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTI 118 PW + A FG + +TG R +E + +P+KN KS AAG+ + +L+ A Sbjct: 85 PWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVYA 144 Query: 119 LAPTVEVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGI 178 A T + A F PA+ MV+R L D ++ + + + + + +P G Sbjct: 145 GATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPADGSRFEPIIGNPG--DGA 202 Query: 179 KSVGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYA 238 ++DE ++ + + + G+ +R + + TT F ++ Q Sbjct: 203 SPSCAIVDEY----HEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVI 258 Query: 239 RDVRDGKIHDPHFLPVIFEHPPEMVESGAHLLMEN-LAMVNPNLGYSVDEAFLYREYRKA 297 ++ +G + D I+ ++ G LA NPN+G SV + +L + ++A Sbjct: 259 -EMLEGTVPDDELFGWIW-----TIDEGDDWTDPRVLAKANPNIGISVYQDYLESQQQRA 312 Query: 298 REAGEETFRGFMSKHANVEIGLALRSDRWAGADFWEEQGRCISLD-----DILLRADVVT 352 ++ T F +KH NV + ++ + D+ + R ++L+ D +L D+ Sbjct: 313 IKSARFT-NTFKTKHLNV--WTSAKAGYFNLEDWKSCEDRSLTLEQFEGQDCVLALDMAR 369 Query: 353 VGIDGGGLDDLLGMYVIGRDRETREWLGWG-HAWAHETAV--VRRKSEASRFQDLVACGD 409 +D + L + GR R + W E V + A R+Q V G Sbjct: 370 -KLDLNSMARLFWHDIDGR----RHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVNQGC 424 Query: 410 MTIVRRVGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDGIVVGISQG 469 + D ++ E + + + +DP G + LA+ G+ V I Q Sbjct: 425 LLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGL---TPVTIVQN 481 Query: 470 W-KLGGAIKTTERKLAEGVLVHGDQPLMAWCVGN--ARVEPKGNAILITKQASGRGKIDP 526 + + +K E + G H P+M WCV N + P + ++ + KID Sbjct: 482 YTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDG 541 Query: 527 LMALFNAV 534 +AL AV Sbjct: 542 AVALIMAV 549 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 84.3 bits (207), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 106/488 (21%), Positives = 198/488 (40%), Gaps = 35/488 (7%) Query: 59 PWVFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTI 118 PW + A FG + +TG R +E + +P+KN KS +AAG+ + +L+ A Sbjct: 85 PWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVIAAGVGIGMFVLDDEFGAEVYA 144 Query: 119 LAPTVEVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGI 178 A T + A F PAR MV+R +L ++ + + + + + +P G Sbjct: 145 GATTEKQAWEVFRPARLMVKRSPELIVAADIEVNASNMNKPEDGSRFEPLIGNPG--DGA 202 Query: 179 KSVGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYA 238 +++DE ++ + + + G+ +R + + TT F ++ Q Sbjct: 203 SPSCSIVDEY----HEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVI 258 Query: 239 RDVRDGKIHDPHFLPVIFEHPPEMVESGAHLLMEN-LAMVNPNLGYSVDEAFLYREYRKA 297 ++ +G + D I+ ++ G LA NPN+G SV + +L + ++A Sbjct: 259 -EMLEGTVPDDELFGWIW-----TIDEGDDWTDPRVLAKANPNIGISVYQDYLESQQQRA 312 Query: 298 REAGEETFRGFMSKHANVEIGLALRSDRWAGADFWEEQGRCISLD-----DILLRADVVT 352 ++ T F +KH NV + ++ + D+ + R ++L+ D +L D+ Sbjct: 313 IKSARFT-NTFKTKHLNV--WTSAKAGYFNLEDWKSCEDRSLTLEQFEGQDCVLALDMAR 369 Query: 353 VGIDGGGLDDLLGMYVIGRDRETREWLGWG-HAWAHETAV--VRRKSEASRFQDLVACGD 409 +D + L + GR R + W E V + A R+Q V G Sbjct: 370 -KLDLNSMARLFWHDIDGR----RHYFCVAPRFWVPEETVRNTENRRMAERYQAWVNQGC 424 Query: 410 MTIVRRVGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDGIVVGISQG 469 + D ++ E + + + +DP G + L + G+ V I Q Sbjct: 425 LLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLEDEGL---TPVTIVQN 481 Query: 470 W-KLGGAIKTTERKLAEGVLVHGDQPLMAWCVGN--ARVEPKGNAILITKQASGRGKIDP 526 + + +K E + G H P+M WCV N + P + ++ + KID Sbjct: 482 YTNMSDPMKELEAAITAGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDG 541 Query: 527 LMALFNAV 534 +AL A+ Sbjct: 542 AVALIMAI 549 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 82.8 bits (203), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 113/489 (23%), Positives = 195/489 (39%), Gaps = 37/489 (7%) Query: 59 PWVFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTI 118 PW +A FG +TG R +E + +P+KN KS +AAG+ + + A Sbjct: 86 PWQLFGLACTFGWVRKKTGFRRFRESYWEVPRKNGKSVIAAGVGIAMFTADDEFGAEVYC 145 Query: 119 LAPTVEVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGI 178 A T A F PAR MV+R L + ++ + + + + + + +P G Sbjct: 146 GATTERQAWEVFRPARLMVKRSPLLIEHLGIEVNAQALNRPEDGSRFEPIIGNPG--DGA 203 Query: 179 KSVGTLIDELWLFGKQYKAEDMLREAIGGLASR--PEGFVVYTTTQSNEPPAGVFRQKLQ 236 + DE + E ML G+ +R P FV+ T + E P R+++ Sbjct: 204 SPSCAIEDEYHEHDTNAQYETML----TGMGARRQPLMFVITTAGANIEGPCYDKRRQVI 259 Query: 237 YARDVRDGKIHDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRK 296 ++ +G + D I+ + E LA NPN+G SV + +L + ++ Sbjct: 260 ---EMLEGTVPDDELFGWIW----TIDEDDDWTDPRVLAKANPNIGISVYQEYLESQQQR 312 Query: 297 AREAGEETFRGFMSKHANVEIGLALRSDRWAGADFWEEQGRCISLD-----DILLRADVV 351 A ++ T F +KH NV + ++ + D+ + R +SL+ D +L D+ Sbjct: 313 AIKSARFT-NTFKTKHLNV--WTSAKAGYFNLEDWKACEDRSLSLEQFEGQDCVLALDMA 369 Query: 352 TVGIDGGGLDDLLGMYVIGRDRETREWLGWG-HAWAHETAV--VRRKSEASRFQDLVACG 408 +D + L + GR R + W E V + A R+Q V G Sbjct: 370 R-KLDLNSMARLFWRDIDGR----RHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVNHG 424 Query: 409 DMTIVRRVGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGI-PDGIVVGIS 467 + D E+ E + + + +DP G + LA+ G+ P IV + Sbjct: 425 FLIETDGAEIDYREILEEAKEANRRCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQNYT 484 Query: 468 QGWKLGGAIKTTERKLAEGVLVHGDQPLMAWCVGN--ARVEPKGNAILITKQASGRGKID 525 + +K E + H P+M WC+ N + P + ++ + KID Sbjct: 485 N---MSDPMKELEAAITSRRFHHDGNPIMTWCISNVIGKNLPGNDDVVRPVKQGNDNKID 541 Query: 526 PLMALFNAV 534 +AL AV Sbjct: 542 GAVALIMAV 550 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 81.3 bits (199), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 109/480 (22%), Positives = 202/480 (42%), Gaps = 32/480 (6%) Query: 64 LVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTV 123 +V +FG + G+R ++ +I + +KN+KS L A I L+ Q+ Y I Sbjct: 86 IVGNIFGWKRKENGLRRFRKAYIQLARKNAKSQLLALIASYECFLSPEQSEVY-IAGWGR 144 Query: 124 EVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADP-NTVSGIKSVG 182 E ++ +N V+ D L + I H+ + + ++ ++ + T G Sbjct: 145 EQSSIVYNEVLAQVQACDLLKG--KYTDSYGRIRHKKSGSIIQPLSKEARKTGDGKNPSL 202 Query: 183 TLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVR 242 +IDE ++ ++ + G+ +R +V TT + + + QY V Sbjct: 203 AVIDEY----HTHETSEIYDVLVSGMVARQNPLIVIITTAGFNLASPCYTE-YQYVSKVI 257 Query: 243 D--GKIHDPHFLPVIFEHPPEMVESGAHLLME-NLAMVNPNLG-YSVDEAFLYREYRKAR 298 D I + + +I E ++ + E N NP + Y FL E + A Sbjct: 258 DPGSPIENEEYFVMICE-----LDKDDDIKDERNWVKANPIVATYEEGMNFLRSELQTAL 312 Query: 299 EAGEETFRGFMSKHANVEIGLALRSDRWAGADFWEEQGRCISLDDILLRADVVTVGIDGG 358 + E+ R F++K N+ I + + + + D W C + I L VGID Sbjct: 313 DVPEK-MRSFLTK--NMNIWVDQKDNGYLPLDKWRA---CAIKEQIDLDVRDCYVGIDLS 366 Query: 359 GLDDLLGMYVIGRDRETREWLGWGHAWAHE-TAVVRRKSEASRFQDLVACGDMTIVRRVG 417 DL + I + R ++ W H++ E T +R+++ + V G +T+ Sbjct: 367 MRIDLTSVSGIVPMDDGRFYV-WSHSFIPEDTLAEKRRTDKVPYDLWVKQGWITVTPGAV 425 Query: 418 DDTAEVAEYVRRIHEAEL--LDHIGIDPSGVGQILDSLAEAGIPDGIVVGISQGWK-LGG 474 D + Y++R+ E ++ + I DP + G ++V I QG++ L Sbjct: 426 VDYQFIQAYIKRLAEDKMWNIKEICYDPYNATHFAHEMEAEGY---VMVEIRQGFRTLSE 482 Query: 475 AIKTTERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAV 534 K + G ++H D P++ W +GNA V+ N ++ + G+IDP+ AL NA+ Sbjct: 483 PTKRFRELVLSGKILHDDNPVLNWAIGNAVVKQDHNENIMLDKDKSTGRIDPIAALINAM 542 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 78.2 bits (191), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 109/498 (21%), Positives = 196/498 (39%), Gaps = 51/498 (10%) Query: 60 WVFDLVAALFGSYDAQ---TGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGY 116 W + A ++G Y VR I+E ++ +PKKN K+ +AAG ++ A+ A Sbjct: 79 WEMFVFANMYGWYHKNEKGKTVRVIRESYVQVPKKNGKTIIAAGALLYAMYGELELGADC 138 Query: 117 TILAPTVEVAAHAFNPARDMVRRDDDLDDLCQVQTHIR----------TITHRVTDTTLK 166 A E A +A P + + L Q+ + +I K Sbjct: 139 YCAASDYEQAQNAAEPIAQAIENSEPLARHTQIYKGVNGTVSGAMYRYSINGIAYQNKFK 198 Query: 167 VVAADPNTVSGIKSVGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEP 226 V+ + + G L DEL + DM SR + ++ +T + + Sbjct: 199 VLTKNTKGLEGKNPYFVLNDEL----HAQENMDMYDNLKSAQISREQPMMLNIST-AGKG 253 Query: 227 PAGVFRQKLQYARDVRDGKIHDPHFLPVIFEHPPEMVESGAHLLMENL---AMVNPNLGY 283 + V + +YA+ V + D F+ + E + E+ MVNPN+G Sbjct: 254 ASSVGMRVYKYAKLVLENDDDDSLFVAIW--------EPNKNYDWEDRKVWKMVNPNIGV 305 Query: 284 SVDEAFLYREYRKAREAGEETFRGFMSKHANVEIGLALRSDRWAGAD--FWEEQGRCISL 341 SV L E++KA+++ F+SKH NV + GAD F +Q + + + Sbjct: 306 SVTMEQLEIEFKKAKQSAHSKAE-FLSKHLNVFVN---------GADNYFEHDQVQHVLV 355 Query: 342 DDI-LLRADVVTVGIDGGGLDDL--LGMYVIGRDRETREWLGWGHAW--AHETAVVRRKS 396 D+ L ++ +G+D DL + + D E R + + +E + K Sbjct: 356 KDLGDLTGEICYLGLDLSKTTDLTCVSLNFPSHDDEGRSIIKVKQMYFLPNENIDFKEKE 415 Query: 397 EASRFQDLVACGDMTIVRRVGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEA 456 + + D+V G T D ++ EY+ + + I DP+ ++++ L Sbjct: 416 DNVPYTDMVERGFATFCDGKMIDQDQIMEYIVECMDLYDVQQINYDPAMSQKLIEKLENL 475 Query: 457 GIPDGIVVGISQGWKLGGA-IKTTERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILIT 515 G+ + ++Q + A + +E + E L+ D PL +C N V N + Sbjct: 476 GLE---CIAVNQYPNVMNAMLDDSEILIYEKRLI-TDNPLFVYCALNVVVVTNINGMKAP 531 Query: 516 KQASGRGKIDPLMALFNA 533 + + KID +A A Sbjct: 532 SKRQSKKKIDGFVAFLCA 549 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 74.3 bits (181), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 121/479 (25%), Positives = 182/479 (37%), Gaps = 64/479 (13%) Query: 62 FDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAP 121 ++L FG + R + V + + +KN KST+AA IM+ L+ + A I A Sbjct: 64 YELTQDTFGRWR-----RKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQVIAAA 118 Query: 122 TVEVAAH-AFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKS 180 A F+ A+ MV L +C VQ + R D T +VV+AD G+ Sbjct: 119 NDRNQARMVFDSAKQMVNASPKLAAVCNVQRDV----IRYKDNTYRVVSADAGRQQGLNP 174 Query: 181 VGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARD 240 +DE + F K D L +G A F++ +T + P G F + Sbjct: 175 AAVSLDE-YAFSKSSDLFDAL--TLGSAARNQPMFLIISTAGPD--PDGPFAALCEQGER 229 Query: 241 VRDGKIHDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREA 300 V G+ DP P++ E+ HL E A NP+ + F A+ + Sbjct: 230 VNSGEADDPTLF--YRSWGPKLGETVDHLDPEVWARCNPSYDILNPDDF----KAAAQRS 283 Query: 301 GEETFRGFMSKHANVEIGLALRSDRWAGADFWEEQGRCISL----DDILLRADVVTVGID 356 E +FR + + +R GA W G SL DD L D V G D Sbjct: 284 TEASFRIY-------RLSQFVR-----GASTWLPHGLWDSLAADDDDPLEPGDEVVCGFD 331 Query: 357 GGGLDDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDLVACGDMTIVRRV 416 G D + V R R+ R ++ GH A + R A + L + D VR Sbjct: 332 GSWKGDSTAL-VACRVRDLRVFV-LGHWEAPADDIHWRVPMADVREALHSALDTYRVR-- 387 Query: 417 GDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDGIVVGISQGWKLGGAI 476 ++ DP + LD+L G P S ++ A Sbjct: 388 ---------------------NLVADPYRWEETLDNLEAEGFPVEAFPTNSLA-RMVPAT 425 Query: 477 KTTERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQ-ASGRGKIDPLMALFNAV 534 + +G L H P +A +GNA ++ ITK+ + R KID +A+ AV Sbjct: 426 QAVYDACRDGRLSHDGNPALARHIGNAVLKEDARGARITKEFGASRRKIDLAVAMVLAV 484 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 70.5 bits (171), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 116/461 (25%), Positives = 177/461 (38%), Gaps = 58/461 (12%) Query: 79 RHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAAH-AFNPARDMV 137 R + V + + +KN KST+AA IM+ L+ + A I A A F+ A+ MV Sbjct: 73 RKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQIIAAANDRNQARMVFDSAKQMV 132 Query: 138 RRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQYKA 197 L +C VQ + R D T +VV+AD G+ +DE + F K Sbjct: 133 NASPKLAAVCDVQRDVI----RYKDNTYRVVSADAGRQQGLNPAAVSLDE-YAFSKHSDL 187 Query: 198 EDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPVIFE 257 D L +G A F++ +T + P G F + V G+ DP + Sbjct: 188 FDAL--TLGSAARNQPMFLIISTAGPD--PDGPFAALCEQGERVNSGEADDPTLFYRSWG 243 Query: 258 HPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRGFMSKHANVEI 317 P++ E+ HL + NP+ + F A+ + E +FR + + Sbjct: 244 --PKLGETVDHLDPDVWRACNPSYDILNPDDF----KAAAQRSTEASFRIY-------RL 290 Query: 318 GLALRSDRWAGADFWEEQGRCISL---DDILLRADVVTVGIDGGGLDDLLGMYVIGRDRE 374 +R GA W G SL DD L D V +G DG D + V R R+ Sbjct: 291 SQFVR-----GASTWLPHGLWDSLAADDDPLEPGDEVVLGFDGSWKGDSTAL-VACRIRD 344 Query: 375 TREWLGWGHAWAHETAVVRRKSEASRFQDLVACGDMTIVRRVGDDTAEVAEYVRRIHEAE 434 + ++ GH A R A ++L D+ VR Sbjct: 345 LKVFV-LGHWEAPADDAHWRVPMADVREELHTALDVYRVR-------------------- 383 Query: 435 LLDHIGIDPSGVGQILDSLAEAGIPDGIVVGISQGWKLGGAIKTTERKLAEGVLVHGDQP 494 ++ DP + LD+L G P S ++ A + +G L H P Sbjct: 384 ---NLVADPYRWEETLDNLEADGFPVEAFPTNSLA-RMVPATQAVYDACRDGRLSHDGNP 439 Query: 495 LMAWCVGNARVEPKGNAILITKQ-ASGRGKIDPLMALFNAV 534 + +GNA ++ ITK+ AS R KID +A+ AV Sbjct: 440 ALGRHIGNAVLKEDARGARITKEHASSRRKIDLAVAMVLAV 480 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 69.7 bits (169), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 112/496 (22%), Positives = 187/496 (37%), Gaps = 43/496 (8%) Query: 59 PWVFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTI 118 PW + +++FG + R KE +I + +KN KS AAGI M + AA Sbjct: 83 PWQLFIFSSIFGWVTKKGKKRRFKETYIRVGRKNGKSFFAAGIGMYMFCADGENAAEVYC 142 Query: 119 LAPTVEVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGI 178 A + A F PA M + DL V +T R + V +P G Sbjct: 143 GATKMAQAKKVFTPASQMAKLLPDLRSRFNVSVWAEKLT-REDGSVFAPVVGNPG--DGD 199 Query: 179 KSVGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYA 238 +IDE ++ + + G+ +R + + TT + + + K Sbjct: 200 SPSCAIIDEY----HEHPTDILYSTMTTGMGARSQPLTLIITTAGKDIESPCY-DKDNEV 254 Query: 239 RDVRDGKIHDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAR 298 + D + + +I+E + +++ NL NPNLG SV L + A+ Sbjct: 255 KQCLDKMLPNERLFGMIYEL--DALDNWQDPC--NLIKANPNLGVSVFYEDLVEKLHLAK 310 Query: 299 EAGEETFRGFMSKHANVEIG---LALRSDRWAGADFWEEQGRCISLDDILLRADVVTVGI 355 T +KH N+ + D WA A + + + L + + + +G+ Sbjct: 311 TVPRMT-NDIKTKHLNMWVSGKTAFFNMDHWAKA-----EDKNLKLSN--FKGEESHLGL 362 Query: 356 D-GGGLDDLLGMYVIGRDRE-TREWLGWGHA-WAHETAV----VRRKSEASRFQDLVAC- 407 D LD G+ V R+ E R + G W E V + A R+Q V Sbjct: 363 DLAAKLDLNAGVPVFTREIEGKRHYYCVGSKFWVPEDTVHSIDPKIAKTAKRYQKWVNMQ 422 Query: 408 -GDMTIVRRVGDDTAEVAEYVRRIHEAELLD-----HIGIDPSGVGQILDSLAEAGIPDG 461 +++ A+ E + + + D I IDP+G + LA+ G Sbjct: 423 WAGGSLLNDTDGAEADYREILASVIDMTERDGVRIASIPIDPTGATALSHELADNGFEP- 481 Query: 462 IVVGISQGW-KLGGAIKTTERKLAEGVLVHGDQPLMAWCVGN--ARVEPKGNAILITKQA 518 + I Q + + +K E LA G H P++AWC+ N P + + + Sbjct: 482 --INIRQDFTNMSPPMKELEAALAGGRFHHDGNPILAWCISNVLGTFVPGSDDRVRPTKG 539 Query: 519 SGRGKIDPLMALFNAV 534 + KID AL A+ Sbjct: 540 DKQSKIDGATALLMAI 555 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 68.2 bits (165), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 99/455 (21%), Positives = 190/455 (41%), Gaps = 38/455 (8%) Query: 90 KKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAAHAFNPARDMVRRDDDLDDLCQV 149 +KN K+T +G+ A+ + A +LA ++ A F+ ++ M++ ++ Sbjct: 3 RKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKAS------PKL 56 Query: 150 QTHIRTITHRV-TDTTLKVV---AADPNTVSGIKSVGTLIDELWLFGKQYKAEDMLREAI 205 + + R + + D T+ + A+D + + G+ + + DE+ F K YK +++ + Sbjct: 57 RENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEF-KDYKLISVIKNS- 114 Query: 206 GGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPVIFEHPPEMVES 265 A+R + ++Y TT + G ++ RD D I D F + + + Sbjct: 115 --RAARLQPLLIYITTAGYQLD-GPLVNMVEAGRDTLDRIIEDER----TFYYLASLDDD 167 Query: 266 GAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRG-FMSKHANVEIGLALRSD 324 N NPNLG S+D A + E+ KA+ +E RG F++K N+ +D Sbjct: 168 DDINDSSNWIKANPNLGVSIDLAEMKEEWEKAKRTPDE--RGDFITKRFNI----FANND 221 Query: 325 RWAGADF--WEEQGRCISLDDILLRADVVTVGIDGGGLDDLLG-MYVIGRDRETREWLGW 381 + D+ ++ ISLD++ R T+G D +D D L Sbjct: 222 EMSFIDYPTLQKNNDIISLDELEGRP--CTIGYDLSETEDFTAACATFALDNGKVAVLT- 278 Query: 382 GHAWAHETAVVRRKSEASRFQDLVACGDMTIVRRVGDDTAEVAEYVRRIHEAELLDHIGI 441 H+W + V +E + + G +TI D +V ++ +++E +++ I Sbjct: 279 -HSWIPKHKV-EYSNEKIPYIEWEEDGLLTIQDNPYIDYQDVLNWIIKMNEHYVVEKITY 336 Query: 442 DPSGVGQILDSLAEAGIPDGIVVGISQG-WKLGGAIKTTERKLAEGVLVHGDQPLMAWCV 500 D + ++ L G QG L A+K + +G ++ + PLM W + Sbjct: 337 DRANAFKLNQELKNYGFE---TEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYI 393 Query: 501 GNARVEPKGNAILITKQASGRGKIDPLMALFNAVS 535 N +++ N + + S KID A N + Sbjct: 394 NNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYT 428 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 61.2 bits (147), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 116/535 (21%), Positives = 207/535 (38%), Gaps = 61/535 (11%) Query: 29 PDQAAHALAIFKQLRIVDAP--GSPTFGESCAPWVFDLVAALFGSYDAQ-TGVRHIKEVF 85 P+ A A+ K + I+ P G P + AP+ ++ +++G D + +R +VF Sbjct: 41 PNLAGKAV---KFMEILPEPKSGKP---QPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVF 94 Query: 86 ILIPKKNSKSTLAAGIMMTALLL-----NWRQAAGYTILAPTVEVAAHAFNPARD----M 136 I + +KN KS L +G+++ L N RQ YT A + A F +D + Sbjct: 95 ISMARKNGKSLLISGVILYEFLFGKNPANKRQL--YTA-ANDRKQAGIVFGMVKDRLRAL 151 Query: 137 VRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQYK 196 +R+D + + ++ + + +T++ + D V G + ++DE K Sbjct: 152 MRKDPGIKRMVKITRD--ELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEY----ANAK 205 Query: 197 AEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPVIF 256 DM+ G P +T + +F+Q YA+ V G+ + I Sbjct: 206 TTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFIA 265 Query: 257 EHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRGFMSKHANVE 316 E + +++ +++ + +S +L + +AR G + + K N Sbjct: 266 EQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLTTKLAQARADG--SLNAKLVK--NFN 321 Query: 317 IGLALRSDRWAGADFWEEQGRCISLDDILLRADVVTVGIDGGGLDDLLGMYVIGRDRETR 376 I D + D W+ D +R +GID G DL + Sbjct: 322 IWRQATEDSYLDFDAWKAAELTDKPD---IRGQRAWIGIDVGRTSDLFAI---------- 368 Query: 377 EWL----GW----GHAWAHETAVVRRKSEASRFQDLVA----CGDMTIVRRVGDDTAEVA 424 WL GW G+A+ + K + R L A G+++ + D V Sbjct: 369 SWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESGIIDNDRVY 428 Query: 425 EYVRRIHEAELLDHIGI--DPSGVGQILDSLAEAGIPDGIVVGISQG-WKLGGAIKTTER 481 E++ E +D GI DP G +L ++ E P+ +V + QG L K Sbjct: 429 EWLEDFIERNDIDVQGIMYDPYQFGPMLTAI-EKNHPEWPMVQVRQGTLTLSMPTKQFRD 487 Query: 482 KLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSL 536 + G + H D +M NA + N + I K KID + A +A ++ Sbjct: 488 DVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYA-NKIDMIDATLDAYAI 541 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 56.2 bits (134), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 87/344 (25%), Positives = 141/344 (40%), Gaps = 28/344 (8%) Query: 63 DLVAALFG--SYDAQTGV--RHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTI 118 D+V LFG Y + G R + +I + +KN K+ L AGIM+ L+ + Q+ Sbjct: 57 DIVRPLFGRVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYG 116 Query: 119 LAPTVEVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGI 178 +A + AA AF+ A MV+ L +V + + I T++ V+AAD + G Sbjct: 117 VARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGS 176 Query: 179 KSVGTLIDEL--WLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQ 236 G DE+ W G + D LR +G +R + +V +TT N+ + + Sbjct: 177 NPSGCGADEILAWQDGGMW---DSLRTGMGS-GARVQPLMVASTTAGNDTEGFAGLKHRE 232 Query: 237 YARDVRDGKIHDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRK 296 R + D D + V + P M E + E NP LG + + ++ + Sbjct: 233 MERVMEDPDNPDFKHIFVYMRNTP-MEEDPWN--EECWPHANPALGRFLSWEAMRKQAAE 289 Query: 297 AREA--GEETFRGF-MSKHANVEIGLALRSDRWAGADFWEE-QGRCISLDDILLRA---D 349 AR E FR F +++ N I RW W+E +G + L A Sbjct: 290 ARNNPIAEMAFRQFKLNQWQNSTI-------RWMRMPAWDECKGTVFKSNKDLFDAFAGQ 342 Query: 350 VVTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWAHETAVVR 393 G+D DL + + + L W H W E+A+ + Sbjct: 343 SCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRH-WIPESALAK 385 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 55.1 bits (131), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 96/461 (20%), Positives = 174/461 (37%), Gaps = 36/461 (7%) Query: 59 PWVFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTI 118 PW + A +FG TG R +E + IP+KN KS A + + A Sbjct: 81 PWQVFIEANIFGWVKRDTGKRRFREAYEEIPRKNGKSARLAARGIYLFAADGESGAEVYS 140 Query: 119 LAPTVEVAAHAFNPARDMVRRDDDLDD-----LCQVQTHIRTITHRVTDTTLKVVAADPN 173 A T + A F PA M + ++L + L Q + + + + V +P Sbjct: 141 GATTEKQAFEVFRPAWMMAHKLENLRNRFGIELSGNQKNPGPMFVMEDMSKFETVIGNPG 200 Query: 174 TVSGIKSVGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFV-VYTTTQSNEPPAGVFR 232 G L+DE ++ + ++ G+ +R + + + TT SN G Sbjct: 201 --DGASPHAALVDEY----HEHDTDALVDTMQTGMGAREQPLLSIITTAGSN--LGGPCH 252 Query: 233 QKLQYARDVRDGKIHDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYR 292 +K + + +G+ D +I+ + E +L NPN G SV FL Sbjct: 253 EKRRDVIRILEGQTIDETIFGIIY----TIDEDDPWDDPASLIKANPNYGVSVFPDFLLA 308 Query: 293 EYRKAREAGEETFRGFMSKHANVEIGLALRSDRWAGADFWEEQGRCISLDDILLRADVVT 352 + ++A+ + + F +KH N +G W W+ Q R ++ D + Sbjct: 309 QLQQAKRSASKQ-NAFRTKHLNQWVGA---RTVWMNMLAWQRQKRDFTIAD--MAGCRCW 362 Query: 353 VGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDLVACGDMTI 412 + +D D+ + ++ E G + A E ++Q+ G + + Sbjct: 363 MALDLASKKDVAALVMLF------EKAGQFYCIPRFYAPEAAAEENEKYQNFALEGHLVL 416 Query: 413 VRRVGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDGIVVGISQGWK- 471 D A + + + + L D ++ L+ IP VV +Q K Sbjct: 417 TPGSMTDYAFIEADILDLAKQIDLQDAAFDDWQANYLITRLSNTSIP---VVDFNQTVKN 473 Query: 472 LGGAIKTTERKLAEGVLVHGDQPLMAWCVGN--ARVEPKGN 510 + +K E ++ L H P+M W +GN A+++ K N Sbjct: 474 MSDPMKEVEARVIARTLWHDGNPVMTWMMGNVAAKIDAKEN 514 >gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764473;genbank:gi:115334627;genbank:GeneI D:5179266 Length = 573 Score = 53.1 bits (126), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 59/264 (22%), Positives = 118/264 (44%), Gaps = 25/264 (9%) Query: 8 ACPDWAERLKKGLSIIPAPIY---PDQAAHALAIFKQLRIVDA----PGSPTFGES--CA 58 AC + + K+ + P Y P +A + I ++ + D G+P GE Sbjct: 24 ACRELIQAAKRFFKDLENPKYDFNPREAEFVIQIIEKTFVHDQGERLDGTPLRGEPFLLE 83 Query: 59 PWVFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTI 118 PW ++ L G Y T +R KE FI IP+KN K+ L A + LL + + I Sbjct: 84 PWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKNGKTRLIAALAWALALLERQSGSKIYI 143 Query: 119 LAPTVEVAAHAFNPARDMVRR---DDDLDDLCQVQTHIRTITHRVTDTT--LKVVAADPN 173 + ++ + +F +R+ + + L Q + +I+ +D + ++ +AA+P+ Sbjct: 144 TSAALQQSLQSFEFILFNLRQMGEEQNFRILNNNQEN--SISGEFSDGSIYIRALAANPD 201 Query: 174 TVSGIKSVGTLIDELWLFG--KQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVF 231 + + DE+ + KQY ++++EA+ ++ ++ TT ++ + + Sbjct: 202 KQDSLNCNVGIADEMHAYKTPKQY---NIIKEAMKAYTNK---LMIGITTAGDDMTSFCY 255 Query: 232 RQKLQYARDVRDGKIHDPHFLPVI 255 Q+LQY + + D + D + I Sbjct: 256 -QRLQYCKKILDETVTDEAYFVFI 278 >gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425601;genbank:gi:155042934;genbank:Ge neID:5469543 Length = 572 Score = 53.1 bits (126), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 59/264 (22%), Positives = 118/264 (44%), Gaps = 25/264 (9%) Query: 8 ACPDWAERLKKGLSIIPAPIY---PDQAAHALAIFKQLRIVDA----PGSPTFGES--CA 58 AC + + K+ + P Y P +A + I ++ + D G+P GE Sbjct: 24 ACRELIQAAKRFFKDLENPKYDFNPREAEFVIQIIEKTFVHDQGERLDGTPLRGEPFLLE 83 Query: 59 PWVFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTI 118 PW ++ L G Y T +R KE FI IP+KN K+ L A + LL + + I Sbjct: 84 PWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKNGKTRLIAALAWALALLERQSGSKIYI 143 Query: 119 LAPTVEVAAHAFNPARDMVRR---DDDLDDLCQVQTHIRTITHRVTDTT--LKVVAADPN 173 + ++ + +F +R+ + + L Q + +I+ +D + ++ +AA+P+ Sbjct: 144 TSAALQQSLQSFEFILFNLRQMGEEQNFRILNNNQEN--SISGEFSDGSIYIRALAANPD 201 Query: 174 TVSGIKSVGTLIDELWLFG--KQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVF 231 + + DE+ + KQY ++++EA+ ++ ++ TT ++ + + Sbjct: 202 KQDSLNCNVGIADEMHAYKTPKQY---NIIKEAMKAYTNK---LMIGITTAGDDMTSFCY 255 Query: 232 RQKLQYARDVRDGKIHDPHFLPVI 255 Q+LQY + + D + D + I Sbjct: 256 -QRLQYCKKILDETVTDEAYFVFI 278 >gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037663;genbank:gi:9634121;genbank:GeneID: 1262500 Length = 504 Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 108/461 (23%), Positives = 184/461 (39%), Gaps = 48/461 (10%) Query: 88 IPKKNSKSTLAAGIMMTAL-----LLNWRQAAGYTILAPTVEVAAHAFNPARDMVRRDDD 142 I +KN K+ L AGI++ L + N + +G A + E AA FN A MV + Sbjct: 54 IARKNGKTGLIAGILLAHLVGPEAVQNTQIVSG----ALSREQAAIVFNLAVKMVNLNPK 109 Query: 143 LDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQYKAEDMLR 202 L ++ + + + + K ++A+ T G+ + ++DE G+ +D Sbjct: 110 LQEIVHITPSGKKLIGLPCNVEYKALSAEGKTTHGLSPILAILDET---GQVRGPQDDFI 166 Query: 203 EAIGGLASRPEG--FVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPVIFEHPP 260 +AI E +V +T +N+ A + + A K DPH + ++E P Sbjct: 167 DAITTAQGAHENPLLIVISTQAAND--ADLLSIWIDDAV-----KSKDPHIVCHVYEAPK 219 Query: 261 EMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKA--REAGEETFRGF-MSKHANVEI 317 + S E+ NP LG E + R+ KA + E TFR +++ + Sbjct: 220 DADISK----RESWLAANPALGTFRSEKDMARQAEKAGRMPSFENTFRNLNLNQRVSTVS 275 Query: 318 GLALRSDRWAGADFWEEQGRCISLDDILLRADVVTVGIDGGGLDDLLGMYVIGRDRETRE 377 RS WE G + G+D +DL + + G + + Sbjct: 276 PFISRS-------VWELCGEM-----PINTPRKWYAGLDLSARNDLTALVIAG-EADDGV 322 Query: 378 WLGWGHAWA-HETAVVRRKSEASRFQDLVACGDMTIVRRVGDDTAEVAEYVRRIHEAELL 436 W + W +T R K++ + + V G + D + V + I L Sbjct: 323 WDVFPFFWTPQKTLEERTKTDRAPYDVWVREGLLRTTPGASVDYSFVVADIAEIIGDFDL 382 Query: 437 DHIGIDPSGVGQILDSLAEAGIPDGIVVGISQGWK-LGGAIKTTERKLAEGVLVHGDQPL 495 I D + Q G+ + V QG+K +G A+ T E + G + HG P+ Sbjct: 383 TSIAFDRWRIDQFRKDADAIGLSLPL-VEFGQGFKDMGPAVDTLESLMLNGRVRHGMHPV 441 Query: 496 MAWCVGNARV--EPKGNAILITKQASGRGKIDPLMALFNAV 534 + C NA V + GN L +A+GR ID ++A+ +V Sbjct: 442 LTMCAVNAVVVKDAAGNRKLDKSKATGR--IDGMVAMTMSV 480 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID: 1262528 Length = 504 Score = 51.2 bits (121), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 113/490 (23%), Positives = 194/490 (39%), Gaps = 54/490 (11%) Query: 59 PWVFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTAL-----LLNWRQA 113 P+ D + A+ YD G + I +KN K+ L AGI++ L + N + Sbjct: 31 PFQKDFILAV---YDNPAGTDM---AILSIARKNGKTGLIAGILLAHLVGPEAVQNTQIV 84 Query: 114 AGYTILAPTVEVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPN 173 +G A + E AA FN A MV + L ++ + + + + K ++A+ Sbjct: 85 SG----ALSREQAAIVFNLAVKMVNLNPKLQEIVHITPSGKKLIGLPCNVEYKALSAEGK 140 Query: 174 TVSGIKSVGTLIDELWLFGKQYKAEDMLREAIGGLASRPEG--FVVYTTTQSNEPPAGVF 231 T G+ + ++DE G+ +D +AI E +V +T +N+ A + Sbjct: 141 TTHGLSPILAILDET---GQVRGPQDDFIDAITTAQGAHENPLLIVISTQAAND--ADLL 195 Query: 232 RQKLQYARDVRDGKIHDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLY 291 + A K DPH + ++E P + S E+ NP LG E + Sbjct: 196 SIWIDDAV-----KSKDPHIVCHVYEAPKDADISK----RESWLAANPALGTFRSEKDMA 246 Query: 292 REYRKA--REAGEETFRGF-MSKHANVEIGLALRSDRWAGADFWEEQGRCISLDDILLRA 348 R+ KA + E TFR +++ + RS WE G + Sbjct: 247 RQAEKAGRMPSFENTFRNLNLNQRVSTVSPFISRS-------VWELCGEM-----PINTP 294 Query: 349 DVVTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWA-HETAVVRRKSEASRFQDLVAC 407 G+D +DL + + G + + W + W +T R K++ + + V Sbjct: 295 RKWYAGLDLSARNDLTALVIAG-EADDGVWDVFPFFWTPQKTLEERTKTDRAPYDVWVRE 353 Query: 408 GDMTIVRRVGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDGIVVGIS 467 G + D + V + I L + D + Q G+ + V Sbjct: 354 GLLRTTPGASVDYSFVVADIAEIIGDFDLTSMAFDRWRIDQFRKDADAIGLSLPL-VEFG 412 Query: 468 QGWK-LGGAIKTTERKLAEGVLVHGDQPLMAWCVGNARV--EPKGNAILITKQASGRGKI 524 QG+K +G A+ T E + G + HG P++ C NA V + GN L +A+GR I Sbjct: 413 QGFKDMGPAVDTLESLMLNGRVRHGMHPVLTMCAVNAVVVKDAAGNRKLDKSKATGR--I 470 Query: 525 DPLMALFNAV 534 D ++A+ +V Sbjct: 471 DGMVAMTMSV 480 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 50.4 bits (119), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 97/478 (20%), Positives = 171/478 (35%), Gaps = 31/478 (6%) Query: 77 GVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAAHAFNPARDM 136 +R ++ I + +KN K+ L AGI++ L + + + A DM Sbjct: 106 SLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKI--AWDM 163 Query: 137 VRRDDDLDDLCQVQTHIRTITHRVTD--------TTLKVVAADPNTVSGIKSVGTLIDEL 188 ++ L L +R T V D + ++ ++ D V G + ++DE Sbjct: 164 AKK--QLSSLRAKDVDVRKATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEF 221 Query: 189 WLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHD 248 K +ML G F++ +T + + + Y + DG+I D Sbjct: 222 ----AASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITD 277 Query: 249 PHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRGF 308 + + E E N NP L L R R ET G Sbjct: 278 EGYFGYVAEQDNEEEIKDE----SNWIKSNPILEVEALHDKLMDYLRTRRRVSLET--GE 331 Query: 309 MSKHANVEIGLALRSDRWAGADFWEEQGRCISLDDILLRADVVTVGIDGGGLDDLLGMYV 368 ++K + +S + D + I D R V +G+D G + DL + Sbjct: 332 INKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRR--VWLGVDVGRVSDLFAISS 389 Query: 369 IGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDLV---ACGDMTIVRRVGDDTAEVAE 425 + + + + K + + +L C T+ V DD + + Sbjct: 390 VIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEK 449 Query: 426 YVRRIHEAEL-LDHIGIDPSGVGQILDSLAEAGIPDGIVVGISQ-GWKLGGAIKTTERKL 483 ++ E ++ I DP G +L ++ E P+ ++ +SQ L K L Sbjct: 450 IEEMVYTNEWEVNGICFDPYQFGTLL-TMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDL 508 Query: 484 AEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSLMSLNP 541 +G + H PL+ V NA ++ N + I K + KIDPL A + ++ L P Sbjct: 509 KKGKIKHSGNPLLTMAVNNAYIKTDNNGMRIDKNKNS-NKIDPLDAALDGYAVCYLEP 565 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 47.0 bits (110), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 95/476 (19%), Positives = 180/476 (37%), Gaps = 48/476 (10%) Query: 78 VRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAAHAFNPARDMV 137 V I E+F+ + + + KS+L A ++ ++L + ++A A H F+ R+ Sbjct: 90 VNLINEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQT 149 Query: 138 RRDDDLDDLCQVQTHIRT---ITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQ 194 D L + + T + TT K D G S + DE+ +G Sbjct: 150 EASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYG-- 207 Query: 195 YKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPV 254 ED+ G + + + T G++ + ++ + + L Sbjct: 208 ---EDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKSEEEFYNDRSFGLLY 264 Query: 255 IFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAR--EAGEETFRGFMSKH 312 + E+ ++ + +N M P +G + + EY A+ A + F F Sbjct: 265 MLENHEQVKDK------KNWTMALPLIGSVPKWSGVIEEYELAQGDPALQNKFLAF---- 314 Query: 313 ANVEIGLALRSDRWAGADFWEEQGRCISLDDILLRADVVTVGIDGGGLDDLLGMYVIGRD 372 +GL ++ + F + + + + + VGID + DL + + Sbjct: 315 ---NMGLPMQDTAYY---FTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCEL 368 Query: 373 RETREWLGWGHAWAHE-TAVVRRKSEA------SRFQDLVACGDMTIVRRVGDDTAEVAE 425 G ++H T VR + E + + V G++ ++ + ++ Sbjct: 369 E--------GKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 Query: 426 YVR--RIHEAELLDHIGIDPSGVGQILDSLAEAGIPDG---IVVGISQGWKLGGAIKTTE 480 Y+ R L IG DP+ +IL L E D I QG+ + IK + Sbjct: 421 YINDFRTKTGCRLRKIGYDPARY-EILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLK 479 Query: 481 RKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSL 536 KLAE L+H +Q +M W + N V+ + + + + KIDP +AL A+ + Sbjct: 480 SKLAENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEM 534 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 47.0 bits (110), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 81/329 (24%), Positives = 132/329 (40%), Gaps = 30/329 (9%) Query: 78 VRHIKEVFI----LIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAAHAFNPA 133 + H VF+ L P N++ L AGIM+ L+ + Q+ +A + AA AF+ A Sbjct: 405 IDHPSHVFLAGKSLTPTHNTE--LLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVA 462 Query: 134 RDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGTLIDEL--WLF 191 MV+ L +V + + I T++ V+AAD + G G DE+ W Sbjct: 463 AQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQD 522 Query: 192 GKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHF 251 G + D LR +G +R + +V +TT N+ + + R + D D Sbjct: 523 GGMW---DSLRTGMGS-GARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKH 578 Query: 252 LPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREA--GEETFRGF- 308 + V + P M E + E NP LG + + ++ +AR E FR F Sbjct: 579 IFVYMRNTP-MEEDPWN--EECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFK 635 Query: 309 MSKHANVEIGLALRSDRWAGADFWEE-QGRCISLDDILLRA---DVVTVGIDGGGLDDLL 364 +++ N I RW W+E +G + L A G+D DL Sbjct: 636 LNQWQNSTI-------RWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLC 688 Query: 365 GMYVIGRDRETREWLGWGHAWAHETAVVR 393 + + + L W H W E+A+ + Sbjct: 689 SICYLFPQSDGSVDLLWRH-WIPESALAK 716 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 44.7 bits (104), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 94/476 (19%), Positives = 179/476 (37%), Gaps = 48/476 (10%) Query: 78 VRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAAHAFNPARDMV 137 V I E+F+ + + + KS+L A ++ ++L + ++A A H F+ R+ Sbjct: 90 VNLINEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQT 149 Query: 138 RRDDDLDDLCQVQTHIRT---ITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQ 194 D L + + T + TT K D G S + DE+ +G Sbjct: 150 EASDTLRVYNENKIFKSTKQGLEFTAFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYG-- 207 Query: 195 YKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPV 254 ED+ G + + + T G++ + ++ + + L Sbjct: 208 ---EDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKSEEEFYNDRSFGLLY 264 Query: 255 IFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAR--EAGEETFRGFMSKH 312 + E+ ++ + +N M P +G + + EY A+ A + F F Sbjct: 265 MLENHEQVKDK------KNWTMALPLIGDVPKWSGVIEEYELAQGDPALQNKFLAF---- 314 Query: 313 ANVEIGLALRSDRWAGADFWEEQGRCISLDDILLRADVVTVGIDGGGLDDLLGMYVIGRD 372 +GL ++ + F + + + + + VGID + DL + + Sbjct: 315 ---NMGLPMQDTAYY---FTPQDTKLTEFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCEL 368 Query: 373 RETREWLGWGHAWAHE-TAVVRRKSEA------SRFQDLVACGDMTIVRRVGDDTAEVAE 425 G ++H T VR + E + + V G++ ++ + ++ Sbjct: 369 E--------GKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 Query: 426 YVR--RIHEAELLDHIGIDPSGVGQILDSLAEAGIPDG---IVVGISQGWKLGGAIKTTE 480 Y+ R L IG DP+ +IL L E D I QG+ + IK + Sbjct: 421 YINDFRSKTGCRLRKIGYDPARY-EILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLK 479 Query: 481 RKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSL 536 KL E L+H +Q +M W + N V+ + + + + KIDP +AL A+ + Sbjct: 480 SKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEM 534 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 93/476 (19%), Positives = 179/476 (37%), Gaps = 48/476 (10%) Query: 78 VRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAAHAFNPARDMV 137 V + E+F+ + + + KS+L A ++ ++L + ++A A H F+ R+ Sbjct: 90 VNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQT 149 Query: 138 RRDDDLDDLCQVQTHIRT---ITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQ 194 D L + + T + TT K D G S + DE+ +G Sbjct: 150 EASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYG-- 207 Query: 195 YKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPV 254 ED+ G + + + T G++ + ++ + + L Sbjct: 208 ---EDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKSEEEFYNDRSFGLLY 264 Query: 255 IFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAR--EAGEETFRGFMSKH 312 + E+ ++ + +N M P +G + + EY A+ A + F F Sbjct: 265 MLENHEQVKDK------KNWTMALPLIGDVPKWSGVIEEYELAQGDPALQNKFLAF---- 314 Query: 313 ANVEIGLALRSDRWAGADFWEEQGRCISLDDILLRADVVTVGIDGGGLDDLLGMYVIGRD 372 +GL ++ + F + + + + + VGID + DL + + Sbjct: 315 ---NMGLPMQDTAYY---FTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCEL 368 Query: 373 RETREWLGWGHAWAHE-TAVVRRKSEA------SRFQDLVACGDMTIVRRVGDDTAEVAE 425 G ++H T VR + E + + V G++ ++ + ++ Sbjct: 369 E--------GKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 Query: 426 YVR--RIHEAELLDHIGIDPSGVGQILDSLAEAGIPDG---IVVGISQGWKLGGAIKTTE 480 Y+ R L IG DP+ +IL L E D I QG+ + IK + Sbjct: 421 YINDFRTKTGCRLRKIGYDPARY-EILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLK 479 Query: 481 RKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSL 536 KL E L+H +Q +M W + N V+ + + + + KIDP +AL A+ + Sbjct: 480 SKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEM 534 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 43.5 bits (101), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 95/478 (19%), Positives = 179/478 (37%), Gaps = 52/478 (10%) Query: 78 VRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAAHAFNPARDMV 137 V I E+F+ + + + KS+L A ++ ++L + ++A A H F+ R+ Sbjct: 90 VNLINEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQT 149 Query: 138 RRDDDLDDLCQVQTHIRT---ITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQ 194 D L + + T + TT K D G S + DE+ +G Sbjct: 150 EASDTLRVYNENKIFKSTKQGLEFASFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYG-- 207 Query: 195 YKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPV 254 ED+ G + + + T G++ + ++ + + L Sbjct: 208 ---EDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKSEEEFYNDRSFGLLY 264 Query: 255 IFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAR--EAGEETFRGFMSKH 312 + E+ ++ + +N M P +G + + EY A+ A + F F Sbjct: 265 MLENHEQVKDK------KNWTMALPLIGSVPKWSGVIEEYELAQGDPALQNKFLAF---- 314 Query: 313 ANVEIGLALRSDRWAGADFWEEQGRCISLDDILLRADVVTVGIDGGGLDDLLGMYVIGRD 372 +GL ++ + F + + + + + VGID + DL + + Sbjct: 315 ---NMGLPMQDTAYY---FTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCEL 368 Query: 373 RETREWLGWGHAWAHE-TAVVRRKSEA------SRFQDLVACGDMTIVR----RVGDDTA 421 G ++H T VR + E + + V G++ ++ V D Sbjct: 369 E--------GKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 Query: 422 EVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDG---IVVGISQGWKLGGAIKT 478 + ++ R L IG DP+ +IL L E D I QG+ + IK Sbjct: 421 HINDF--RTKTGCRLRKIGYDPARY-EILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKL 477 Query: 479 TERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSL 536 + KL E L+H +Q +M W + N V+ + + + + KIDP +AL A+ + Sbjct: 478 LKSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEM 534 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 42.7 bits (99), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 5/104 (4%) Query: 436 LDHIGIDPSGVGQILDSLAEAGIPDG---IVVGISQGWKLGGAIKTTERKLAEGVLVHGD 492 L IG DP+ +IL L E D I QG+ + IK + KL E L+H + Sbjct: 433 LRKIGYDPARY-EILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIH-N 490 Query: 493 QPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSL 536 Q +M W + N V+ + + + + KIDP +AL A+ + Sbjct: 491 QKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEM 534 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 42.4 bits (98), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 88/477 (18%), Positives = 177/477 (37%), Gaps = 27/477 (5%) Query: 64 LVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTV 123 L A +FG G R ++VFI + +KN+KS A + L + Y I T Sbjct: 85 LAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTFLGDEKQRAY-IAGWTR 143 Query: 124 EVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGT 183 + ++ + + + + L+ + + + + + + T G Sbjct: 144 DQSSEVYEAVKTGISSSELLEGKWK-EAYSTIEIFKNGSVVVPLSKEARKTGDGKNPSLG 202 Query: 184 LIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRD 243 ++DE ++ +++ G+ +R E + TT + +R+ +Y D+ D Sbjct: 203 IVDEY----HAHETDEIYDVLSSGMVARKEPLMFIITTAGFDLSRPCYRE-YEYVSDILD 257 Query: 244 --GKIHDPHFLPVIFEHPPEMVESGAHLLME-NLAMVNPNLGYSVDEAFLYREYRKAREA 300 + + + +I E +E + E N NP + + R K Sbjct: 258 PSKNVENDDYFVMICE-----LEKNDDIKDESNWIKANPIVATYEEGLEGIRSDLKVALD 312 Query: 301 GEETFRGFMSKHANVEIGLALRSDRWAGADFWEEQGRCISLDDILLRADVVTVGIDGGGL 360 E R F++K+ N I + + + + W+ +C +D + +G D Sbjct: 313 RPEKMRAFLTKNMN--IWVDKKDNGYMDMSKWQ---KC-EVDTFDFSGATLWIGGDLSMT 366 Query: 361 DDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKS-EASRFQDLVACGDMTIVRRVGDD 419 DL + +G D E +G H++ E + + + + R+ G +T+ D Sbjct: 367 TDLTSVGWVGMDDEGDFIVG-QHSFMPEARLKEKMAIDKVRYDLWAEQGYLTLTPGEMVD 425 Query: 420 TAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDGIVVGISQGW-KLGGAIKT 478 V ++ + + + D + +L G + V I Q L K Sbjct: 426 YTIVESWIENFSKDKEIQEFDYDKWNALHLAQNLENKGF---VCVEIPQRIANLSIPTKN 482 Query: 479 TERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVS 535 K+ E + H P++ W + NA V+ ++ + + +IDP A+ NA S Sbjct: 483 FREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPAAAVLNAFS 539 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 41.6 bits (96), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 87/477 (18%), Positives = 178/477 (37%), Gaps = 27/477 (5%) Query: 64 LVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTV 123 L A +FG G R ++VFI + +KN+KS A + L + Y I T Sbjct: 85 LAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTFLGDEKQRAY-IAGWTR 143 Query: 124 EVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGT 183 + ++ + + + + L+ + + + + + + T G Sbjct: 144 DQSSEVYEAVKTGISSSELLEGKWK-EAYSTIEIFKNGSVVVPLSKEARKTGDGKNPSLG 202 Query: 184 LIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRD 243 ++DE ++ +++ G+ +R E + TT + +R+ +Y D+ D Sbjct: 203 IVDEY----HAHETDEIYDVLSSGMVARKEPLMFIITTAGFDLSRPCYRE-YEYVSDILD 257 Query: 244 --GKIHDPHFLPVIFEHPPEMVESGAHLLME-NLAMVNPNLGYSVDEAFLYREYRKAREA 300 + + + +I E +E + E N NP + + R K Sbjct: 258 PSKNVENDDYFVMICE-----LEKNDDIKDESNWIKANPIVATYEEGLEGIRSDLKVALD 312 Query: 301 GEETFRGFMSKHANVEIGLALRSDRWAGADFWEEQGRCISLDDILLRADVVTVGIDGGGL 360 E R F++K+ N I + + + + W+ +C +D + + +G D Sbjct: 313 RPEKMRAFLTKNMN--IWVDKKDNGYMDMSKWQ---KC-EVDTLDFSGATLWIGGDLSMT 366 Query: 361 DDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKS-EASRFQDLVACGDMTIVRRVGDD 419 DL + +G D E +G H++ E + + + + R+ G +T+ D Sbjct: 367 TDLTSVGWVGMDDEGDFIVG-QHSFMPEARLKEKMAIDKVRYDLWAEQGYLTLTPGEMVD 425 Query: 420 TAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDGIVVGISQGW-KLGGAIKT 478 V ++ + + + D + +L G + V I Q L K Sbjct: 426 YTIVESWIENFSKDKEIQEFDYDKWNALHLAQNLENKGF---VCVEIPQRIANLSIPTKN 482 Query: 479 TERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVS 535 K+ E + H P++ W + NA V+ ++ + + +IDP A+ NA + Sbjct: 483 FREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPAAAVLNAFA 539 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 41.2 bits (95), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 87/477 (18%), Positives = 177/477 (37%), Gaps = 27/477 (5%) Query: 64 LVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTV 123 L A +FG G R ++VFI + +KN+KS A + L + Y I T Sbjct: 85 LAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTFLGDEKQRAY-IAGWTR 143 Query: 124 EVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGT 183 + ++ + + + + L+ + + + + + + T G Sbjct: 144 DQSSEVYEAVKTGISSSELLEGKWK-EAYSTIEIFKNGSVVVPLSKEARKTGDGKNPSLG 202 Query: 184 LIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRD 243 ++DE ++ +++ G+ +R E + TT + +R+ +Y D+ D Sbjct: 203 IVDEY----HAHETDEIYDVLSSGMVARKEPLMFIITTAGFDLSRPCYRE-YEYVSDILD 257 Query: 244 --GKIHDPHFLPVIFEHPPEMVESGAHLLME-NLAMVNPNLGYSVDEAFLYREYRKAREA 300 + + + +I E +E + E N NP + + R K Sbjct: 258 PSKNVENDDYFVMICE-----LEKNDDIKDESNWIKANPIVATYEEGLEGIRSDLKVALD 312 Query: 301 GEETFRGFMSKHANVEIGLALRSDRWAGADFWEEQGRCISLDDILLRADVVTVGIDGGGL 360 E R F++K+ N I + + + + W+ +C +D + +G D Sbjct: 313 RPEKMRAFLTKNMN--IWVDKKDNGYMDMSKWQ---KC-EVDTFDFSGATLWIGGDLSMT 366 Query: 361 DDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKS-EASRFQDLVACGDMTIVRRVGDD 419 DL + +G D E +G H++ E + + + + R+ G +T+ D Sbjct: 367 TDLTSVGWVGMDDEGDFIVG-QHSFMPEARLKEKMAIDKVRYDLWAEQGYLTLTPGEMVD 425 Query: 420 TAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDGIVVGISQGW-KLGGAIKT 478 V ++ + + + D + +L G + V I Q L K Sbjct: 426 YTIVESWIENFSKDKEIQEFDYDKWNALHLAQNLENKGF---VCVEIPQRIANLSIPTKN 482 Query: 479 TERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVS 535 K+ E + H P++ W + NA V+ ++ + + +IDP A+ NA + Sbjct: 483 FREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPAAAVLNAFA 539 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 40.0 bits (92), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 87/475 (18%), Positives = 176/475 (37%), Gaps = 27/475 (5%) Query: 64 LVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTV 123 L A +FG G R ++VFI + +KN+KS A + L + Y I T Sbjct: 85 LAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTFLGDEKQRAY-IAGWTR 143 Query: 124 EVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGT 183 + ++ + + + + L+ + + + + + + T G Sbjct: 144 DQSSEVYEAVKTGISSSELLEGKWK-EAYSTIEIFKNGSVVVPLSKEARKTGDGKNPSLG 202 Query: 184 LIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRD 243 ++DE ++ +++ G+ +R E + TT + +R+ +Y D+ D Sbjct: 203 IVDEY----HAHETDEIYDVLSSGMVARKEPLMFIITTAGFDLSRPCYRE-YEYVSDILD 257 Query: 244 --GKIHDPHFLPVIFEHPPEMVESGAHLLME-NLAMVNPNLGYSVDEAFLYREYRKAREA 300 + + + +I E +E + E N NP + + R K Sbjct: 258 PSKNVENDDYFVMICE-----LEKNDDIKDESNWIKANPIVATYEEGLEGIRSDLKVALD 312 Query: 301 GEETFRGFMSKHANVEIGLALRSDRWAGADFWEEQGRCISLDDILLRADVVTVGIDGGGL 360 E R F++K+ N I + + + + W+ +C +D + +G D Sbjct: 313 RPEKMRAFLTKNMN--IWVDKKDNGYMDMSKWQ---KC-EVDTXDFSGATLWIGGDLSMT 366 Query: 361 DDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKS-EASRFQDLVACGDMTIVRRVGDD 419 DL + +G D E +G H++ E + + + + R+ G +T+ D Sbjct: 367 TDLTSVGWVGMDDEGDFIVG-QHSFMPEARLKEKMAIDKVRYDLWAEQGYLTLTPGEMVD 425 Query: 420 TAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDGIVVGISQGW-KLGGAIKT 478 V ++ + + + D + +L G + V I Q L K Sbjct: 426 YTIVESWIENFSKDKEIQEFDYDKWNALHLAQNLENKGF---VCVEIPQRIANLSIPTKN 482 Query: 479 TERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNA 533 K+ E + H P++ W + NA V+ ++ + + +IDP A+ NA Sbjct: 483 FREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPAAAVLNA 537 >gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908828;genbank:gi:118725092;genbank:GeneI D:4555859 Length = 553 Score = 38.1 bits (87), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 81/393 (20%), Positives = 153/393 (38%), Gaps = 42/393 (10%) Query: 156 ITHRVTDTTLKVVAADPNTVSGIKSVGTLIDEL-WLFGKQYKAEDMLREAIGGLASRPEG 214 I +R T + ++ ++ T G + + DE+ + FG + M+ GGL + Sbjct: 166 IINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPE-----MVNVKRGGLGKKKNR 220 Query: 215 FVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPVI--FEHPPEMV-----ESGA 267 Y +T + K + A V GK+ + + P E+ E Sbjct: 221 RTFYISTDGFVREGYIDAMKHKIA-SVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKAN 279 Query: 268 HLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRGFMSKHANV-EIGLALRSDRW 326 +L + L+ L +++E + + ++ + FM+K N+ E+ L W Sbjct: 280 PMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPE------FMTKRMNLPEVDLEKVIAPW 333 Query: 327 AGADFWEEQGRCISLDDILLRADVVTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWA 386 + +LD+ + G+D + D + ++ R + WLG H++ Sbjct: 334 K--EILATNREIPNLDN-----QMCIGGLDFANIRDFASVGLLFRKNDDYIWLG--HSFV 384 Query: 387 HETAVVRRKSEASRFQDLVACGDMTIVRRVGDDTAEV---AEYVRRIHEAELLDHIGIDP 443 + + K E ++ G +TIV DD E+ ++ + E L+ + D Sbjct: 385 RQGFLDDVKLEPP-IKEWEKMGLLTIV---DDDVIEIEYIVDWFLKAREKYGLEKVIADN 440 Query: 444 SGVGQILDSLAEAGIPDGIVVGISQGWKLGGAIKTTERKLAEGVLVHGDQPLMAWCVGN- 502 + + +AGI + V + G + A+ +++GD PLM W N Sbjct: 441 YRTDIVRRAFEDAGIK--LEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFTNNV 498 Query: 503 -ARVEPKGNAILITKQASGRGKIDPLMALFNAV 534 +V+P GN I K+ R K D MA +A+ Sbjct: 499 AVKVKPDGNKEYI-KKDENRRKTDGFMAFVHAL 530 >gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835553;genbank:gi:30043954;genbank:GeneID :1260583 Length = 553 Score = 38.1 bits (87), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 81/393 (20%), Positives = 153/393 (38%), Gaps = 42/393 (10%) Query: 156 ITHRVTDTTLKVVAADPNTVSGIKSVGTLIDEL-WLFGKQYKAEDMLREAIGGLASRPEG 214 I +R T + ++ ++ T G + + DE+ + FG + M+ GGL + Sbjct: 166 IINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPE-----MVNVKRGGLGKKKNR 220 Query: 215 FVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPVI--FEHPPEMV-----ESGA 267 Y +T + K + A V GK+ + + P E+ E Sbjct: 221 RTFYISTDGFVREGYIDAMKHKIA-SVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKAN 279 Query: 268 HLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRGFMSKHANV-EIGLALRSDRW 326 +L + L+ L +++E + + ++ + FM+K N+ E+ L W Sbjct: 280 PMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPE------FMTKRMNLPEVDLEKVIAPW 333 Query: 327 AGADFWEEQGRCISLDDILLRADVVTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWA 386 + +LD+ + G+D + D + ++ R + WLG H++ Sbjct: 334 K--EILATNREIPNLDN-----QMCIGGLDFANIRDFASVGLLFRKNDDYIWLG--HSFV 384 Query: 387 HETAVVRRKSEASRFQDLVACGDMTIVRRVGDDTAEV---AEYVRRIHEAELLDHIGIDP 443 + + K E ++ G +TIV DD E+ ++ + E L+ + D Sbjct: 385 RQGFLDDVKLEPP-IKEWEKMGLLTIV---DDDVIEIEYIVDWFLKAREKYGLEKVIADN 440 Query: 444 SGVGQILDSLAEAGIPDGIVVGISQGWKLGGAIKTTERKLAEGVLVHGDQPLMAWCVGN- 502 + + +AGI + V + G + A+ +++GD PLM W N Sbjct: 441 YRTDIVRRAFEDAGIK--LEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFTNNV 498 Query: 503 -ARVEPKGNAILITKQASGRGKIDPLMALFNAV 534 +V+P GN I K+ R K D MA +A+ Sbjct: 499 AVKVKPDGNKEYI-KKDENRRKTDGFMAFVHAL 530 >gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076613;genbank:gi:13095721;genbank:GeneID :920277 Length = 592 Score = 38.1 bits (87), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 17/72 (23%), Positives = 34/72 (47%) Query: 59 PWVFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTI 118 PW + LFG ++ T +R E I +P+K K+ AA + +++ + I Sbjct: 84 PWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTYI 143 Query: 119 LAPTVEVAAHAF 130 +A +++ +F Sbjct: 144 VANSLKQTQESF 155 >gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958603;genbank:gi:41189518;genbank:GeneID :2743780 Length = 553 Score = 37.0 bits (84), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 82/395 (20%), Positives = 154/395 (38%), Gaps = 46/395 (11%) Query: 156 ITHRVTDTTLKVVAADPNTVSGIKSVGTLIDEL-WLFGKQYKAEDMLREAIGGLASRPEG 214 I +R T + ++ ++ T G + + DE+ + FG + M+ GGL + Sbjct: 166 IINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPE-----MVNVKRGGLGKKKNR 220 Query: 215 FVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPVI--FEHPPEMV-----ESGA 267 Y +T + K + A V GK+ + + P E+ E Sbjct: 221 RTFYISTDGFVREGYIDAMKHKIA-SVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKAN 279 Query: 268 HLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRGFMSKHANV-EIGLALRSDRW 326 +L + L+ L +++E + + ++ + FM+K N+ E+ L W Sbjct: 280 PMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPE------FMTKRMNLPEVDLEKVIAPW 333 Query: 327 AGADFWEEQGRCISLDDILLRADVVTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWA 386 + +LD+ + G+D + D + ++ R + WLG H++ Sbjct: 334 K--EILATNREIPNLDN-----QMCIGGLDFANIRDFASVGLLFRKNDDYIWLG--HSFV 384 Query: 387 HETAVVRRKSEASRFQDLVACGDMTIVRRVGDDTAEV---AEYVRRIHEAELLDHIGIDP 443 + + K E ++ G +TIV DD E+ ++ + E L+ + D Sbjct: 385 RQGFLDDVKLEPP-IKEWEKMGLLTIV---DDDVIEIEYIVDWFLKAREKYGLEKVIADN 440 Query: 444 SGVGQILDSLAEAGIPDGIVVGIS--QGWKLGGAIKTTERKLAEGVLVHGDQPLMAWCVG 501 + + +AGI ++ G L I T A+ +++GD PLM W Sbjct: 441 YRTDIVRRAFEDAGIKLEVLRNPKAIHGL-LAPRIDTM---FAKHNVIYGDNPLMRWFTN 496 Query: 502 N--ARVEPKGNAILITKQASGRGKIDPLMALFNAV 534 N +++P GN I K+ R K D MA +A+ Sbjct: 497 NVAVKIKPDGNKEYI-KKDEVRRKTDGFMAFVHAL 530 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 36.2 bits (82), Expect = 0.001, Method: Compositional matrix adjust. Identities = 91/483 (18%), Positives = 179/483 (37%), Gaps = 55/483 (11%) Query: 76 TGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVA-AHAFNPAR 134 T R + FI + +KN KS L AG+ AGY I A A + R Sbjct: 98 TNYRRFRFAFIQVARKNQKSQLEAGM------------AGYEIGAKGYNAAEVYTLGVER 145 Query: 135 DMVRRDDDLDDLC-------QVQTHIRTITHRVTDTTLKVVAADP-NTVSGIKSVGTLID 186 D + + +L + + + I H+ +++ +K ++ T G +ID Sbjct: 146 DQAKIVFEEWELMASKPLKKRFKFTQKVIKHKKSNSFIKHLSKKAGKTGDGKNPQMAVID 205 Query: 187 ELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKI 246 E + K D+++ G+ +R E +V TT + + + DG Sbjct: 206 E-YHAHPNSKMYDVMK---SGMMARTEPLLVIITTAGEDYEETACYYEYLDCCSILDGTF 261 Query: 247 HDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVD--EAFLYREYRKAREAGEET 304 + + +I E E ++ NP L + E+ + EE Sbjct: 262 ENEKYFVMICELEDEDDPFDEKAWIK----ANPVLCTYEEGIESMRQNANLAKNTSNEEK 317 Query: 305 FRGFMSKHANVEIGLALRSDRWAGADFWEEQGRCISLDDILLRADVVTVGIDGGGLDDLL 364 F++K+ N+ + + ++ +FW+ I+L+ R +G+D DL Sbjct: 318 RIEFLTKNCNIYVAAGEK--KYVDVEFWKACKENITLEK--FRGHDCYIGMDLSKSGDLT 373 Query: 365 GM-----YVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDLVACGDMTIVRRVGDD 419 + Y+ D R++ +G ++ V + + ++ + + + + + Sbjct: 374 SIAFEFPYL---DEGIRKYALFGKSFIPAEVVKEKMKTDNVPYNIWSSKEKGWLIKTEAN 430 Query: 420 TAEVA---------EYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDGIVVGISQGW 470 ++ E + + +E +++ + DP G ++ L E + + G S Sbjct: 431 EGQIVDLWAILNTIESIVKEYELNVIE-VSYDPHGAAMLVSEL-ERRDYNCVECGQSCA- 487 Query: 471 KLGGAIKTTERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMAL 530 KL A + +VH + LM WCV NA + + + S +IDPL + Sbjct: 488 KLNEATVNFRDLMKIKQIVHDENNLMTWCVQNAEKDTNSFGEIKISKKSRFKRIDPLASC 547 Query: 531 FNA 533 A Sbjct: 548 IFA 550 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 36.2 bits (82), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/192 (20%), Positives = 82/192 (42%), Gaps = 9/192 (4%) Query: 351 VTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDLVACGDM 410 V +G+D LDDL + I + + + +L H++ + +KS+ + +A Sbjct: 353 VYIGVDLSRLDDLTSVGFIFPNDDKKVFLH-SHSFIGLRTNLEQKSKRDKINYELAIERG 411 Query: 411 TIVRRVGD----DTAEVAEYVRRIHEAELLD--HIGIDPSGVGQILDSLAEAGIPDGIVV 464 D D+ +V +++ + L+ + DP + ++ + D ++ Sbjct: 412 EAETTQSDSGMIDSKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMAL-DWPLI 470 Query: 465 GISQGWK-LGGAIKTTERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGK 523 + Q +K L +IK +A+ + H D L+ V NA + G + + R K Sbjct: 471 EVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQK 530 Query: 524 IDPLMALFNAVS 535 IDP++++ A + Sbjct: 531 IDPIISIITAFT 542 >gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: phage terminase large subunit # Family: family:all:147 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468054;genbank:gi:157265496;genbank:Ge neID:5600564 Length = 485 Score = 35.8 bits (81), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Query: 252 LPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRGFMSK 311 LPV E + S LLME + PN +DE +R YR A +G + R + Sbjct: 369 LPVKSSSVKEQLISNLALLMEKGQVAVPNDKTILDELRNFRYYRTA--SGNQVMRAYGRG 426 Query: 312 HANVEIGLALRSDRWAGAD 330 H ++ + LAL ++ G D Sbjct: 427 HDDIVMSLALAYSQYEGKD 445 >gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467938;genbank:gi:157265379;genbank:Ge neID:5600506 Length = 485 Score = 35.8 bits (81), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Query: 252 LPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAGEETFRGFMSK 311 LPV E + S LLME + PN +DE +R YR A +G + R + Sbjct: 369 LPVKSSSVKEQLISNLALLMEKGQVAVPNDKTILDELRNFRYYRTA--SGNQVMRAYGRG 426 Query: 312 HANVEIGLALRSDRWAGAD 330 H ++ + LAL ++ G D Sbjct: 427 HDDIVMSLALAYSQYEGKD 445 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 9/192 (4%) Query: 351 VTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDLVACGDM 410 V +G+D LDDL + I + + + +L H++ + +KS+ + +A Sbjct: 353 VYIGVDLSRLDDLTSVGFIFPNDDKKVFLH-SHSFIGLRTNLEQKSKRDKINYELAIERG 411 Query: 411 TIVRRVGD----DTAEVAEYVRRIHEAELLD--HIGIDPSGVGQILDSLAEAGIPDGIVV 464 D D +V +++ + L+ + DP + ++ + D ++ Sbjct: 412 EAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMAL-DWPLI 470 Query: 465 GISQGWK-LGGAIKTTERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGK 523 + Q +K L +IK +A+ + H D L+ V NA + G + + R K Sbjct: 471 EVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQK 530 Query: 524 IDPLMALFNAVS 535 IDP++++ A + Sbjct: 531 IDPIISIITAFT 542 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 9/192 (4%) Query: 351 VTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDLVACGDM 410 V +G+D LDDL + I + + + +L H++ + +KS+ + +A Sbjct: 353 VYIGVDLSRLDDLTSVGFIFPNDDKKVFLH-SHSFIGLRTNLEQKSKRDKINYELAIERG 411 Query: 411 TIVRRVGD----DTAEVAEYVRRIHEAELLD--HIGIDPSGVGQILDSLAEAGIPDGIVV 464 D D +V +++ + L+ + DP + ++ + D ++ Sbjct: 412 EAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMAL-DWPLI 470 Query: 465 GISQGWK-LGGAIKTTERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGK 523 + Q +K L +IK +A+ + H D L+ V NA + G + + R K Sbjct: 471 EVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQK 530 Query: 524 IDPLMALFNAVS 535 IDP++++ A + Sbjct: 531 IDPIISIITAFT 542 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 9/192 (4%) Query: 351 VTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDLVACGDM 410 V +G+D LDDL + I + + + +L H++ + +KS+ + +A Sbjct: 353 VYIGVDLSRLDDLTSVGFIFPNDDKKVFLH-SHSFIGLRTNLEQKSKRDKINYELAIERG 411 Query: 411 TIVRRVGD----DTAEVAEYVRRIHEAELLD--HIGIDPSGVGQILDSLAEAGIPDGIVV 464 D D +V +++ + L+ + DP + ++ + D ++ Sbjct: 412 EAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMAL-DWPLI 470 Query: 465 GISQGWK-LGGAIKTTERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGK 523 + Q +K L +IK +A+ + H D L+ V NA + G + + R K Sbjct: 471 EVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQK 530 Query: 524 IDPLMALFNAVS 535 IDP++++ A + Sbjct: 531 IDPIISIITAFT 542 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 9/192 (4%) Query: 351 VTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDLVACGDM 410 V +G+D LDDL + I + + + +L H++ + +KS+ + +A Sbjct: 353 VYIGVDLSRLDDLTSVGFIFPNDDKKVFLH-SHSFIGLRTNLEQKSKRDKINYELAIERG 411 Query: 411 TIVRRVGD----DTAEVAEYVRRIHEAELLD--HIGIDPSGVGQILDSLAEAGIPDGIVV 464 D D +V +++ + L+ + DP + ++ + D ++ Sbjct: 412 EAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMAL-DWPLI 470 Query: 465 GISQGWK-LGGAIKTTERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGK 523 + Q +K L +IK +A+ + H D L+ V NA + G + + R K Sbjct: 471 ELGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQK 530 Query: 524 IDPLMALFNAVS 535 IDP++++ A + Sbjct: 531 IDPIISIITAFT 542 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 9/192 (4%) Query: 351 VTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDLVACGDM 410 V +G+D LDDL + I + + + +L H++ + +KS+ + +A Sbjct: 353 VYIGVDLSRLDDLTSVGFIFPNDDKKVFLH-SHSFIGLRTNLEQKSKRDKINYELAIERG 411 Query: 411 TIVRRVGD----DTAEVAEYVRRIHEAELLD--HIGIDPSGVGQILDSLAEAGIPDGIVV 464 D D +V +++ + L+ + DP + ++ + D ++ Sbjct: 412 EAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMAL-DWPLI 470 Query: 465 GISQGWK-LGGAIKTTERKLAEGVLVHGDQPLMAWCVGNARVEPKGNAILITKQASGRGK 523 + Q +K L +IK +A+ + H D L+ V NA + G + + R K Sbjct: 471 ELGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQK 530 Query: 524 IDPLMALFNAVS 535 IDP++++ A + Sbjct: 531 IDPIISIITAFT 542 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 34.3 bits (77), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 15/226 (6%) Query: 27 IYPDQAAHALAIFKQLRIVDAPGSPTFGESCAPWVFDLVAALFGSYDAQTGVRHIKEVFI 86 IY + A + F L G P +P+ ++A++ G + +T K +FI Sbjct: 57 IYDSEQAKKIVEFSTLLKDVTSGEPF---EASPYQKFILASVQGWRNPETKGMRFKTIFI 113 Query: 87 LIPKKNSKSTLAAGIMMTALL-----LNWRQAAGYTILAPTVEVAAHA-FN--PARDMVR 138 + + N K+ + A + L +N + A +A T + + FN +D V Sbjct: 114 SMARTNGKTQVLATYALYNFLFGSPKINRQLAVSSIDIAHTHNLFNYMRFNWIQLKDGVF 173 Query: 139 RDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQYKAE 198 + L + + + + + +K ++A + ++DE LFG+ K Sbjct: 174 K--KLAKALDINDNSQVMEIKKQSAVMKKLSAQGSPADSDHYTTGIVDEYHLFGQ--KQR 229 Query: 199 DMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDG 244 D + G+ + P + + +T +P +F +Y++ + G Sbjct: 230 DFISSMTSGMVNNPLAQMFFISTAGVDPTVPMFEDYKRYSKMLESG 275 >gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239799;genbank:gi:66395455;genbank:GeneID :5132903 Length = 553 Score = 33.5 bits (75), Expect = 0.006, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 480 ERKLAEGVLVHGDQPLMAWCVGN--ARVEPKGNAILITKQASGRGKIDPLMALFNAV 534 E A+ ++ GD PLM W GN +++ GN K+ R K D AL +A+ Sbjct: 475 EDMFAQQNIIFGDNPLMRWYTGNVAVKIDKYGNKTY-EKKEPVRRKTDGFQALIHAL 530 >gi|15673|lcl|protein:vir:1151 Length: 594 # NCBI annotation: predicted DNA-dependent ATPase terminase subunit # Family: family:all:169 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490600;genbank:gi:17313220;genbank:GeneID :927317 Length = 594 Score = 33.1 bits (74), Expect = 0.008, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 25/43 (58%) Query: 417 GDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIP 459 G D AE AE++R++ + + +IG+D +G+G + L P Sbjct: 454 GKDFAEQAEFIRKVTQRYWVTYIGVDTTGMGSGVAQLVRQFFP 496 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 32.7 bits (73), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 480 ERKLAEGVLVHGDQPLMAWCVGN--ARVEPKGNAILITKQASGRGKIDPLMALFNAV 534 E A +V GD PLM W N +++P GN + K+ R K D A +A+ Sbjct: 469 ETLFANHRIVFGDNPLMRWYTNNVAVKIKPDGNKEYL-KKDEHRRKTDGFQAFVHAL 524 >gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762597;genbank:gi:115304298;genbank:GeneI D:5130610 Length = 514 Score = 32.7 bits (73), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 5/159 (3%) Query: 392 VRRKSEASRFQDLVACGDMTIVRRVGDDTAEVAEYVRRIHEAEL-LDHIGIDPSGVGQIL 450 +R K+ A +++ L G D A V ++ E + L IG DP+ L Sbjct: 352 IRPKNVADKYKHL--SGTFYHDEDKNDTQAAVKLLFDKLQELRIGLVGIGYDPAYSANFL 409 Query: 451 DSLAEAGIPDGIVVGISQG-WKLGGAIKTTERKLAEGVLVHGDQPLMAWCVGNARVEPKG 509 + I ++ + Q + + I + +R L L++ + +M + NARV+ K Sbjct: 410 YLFEQNKIKARLMEKVKQNAFTVSQHIMSLQRLLKTRGLLYNSE-IMKQHLRNARVKYKD 468 Query: 510 NAILITKQASGRGKIDPLMALFNAVSLMSLNPEPKKKEY 548 + + S + KID + A NA+++ LN + +K + Sbjct: 469 TTQVRLVKVSDQSKIDLVDAAVNALAVYELNRDYVEKYF 507 >gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839851;genbank:gi:30065706;genbank:GeneID :1260600 Length = 590 Score = 31.6 bits (70), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Query: 404 LVACGDMTIVRR---VGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIP 459 +VA G I+ R G D A AE +R++ E +++IGID +G+G + L + P Sbjct: 433 VVAGGKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVRSFYP 491 >gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878200;genbank:gi:33438899;genbank:GeneID :1457734 Length = 590 Score = 31.6 bits (70), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Query: 404 LVACGDMTIVRR---VGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIP 459 +VA G I+ R G D A AE +R++ E +++IGID +G+G + L + P Sbjct: 433 VVAGGKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVRSFYP 491 >gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046758;genbank:gi:9630329;genbank:GeneID: 1261531 Length = 590 Score = 31.6 bits (70), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Query: 404 LVACGDMTIVRR---VGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIP 459 +VA G I+ R G D A AE +R++ E +++IGID +G+G + L + P Sbjct: 433 VVAGGKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVRSFYP 491 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 31.2 bits (69), Expect = 0.030, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 22/38 (57%) Query: 64 LVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGI 101 + A ++G Y + G R ++ +I + +KN+KS A I Sbjct: 75 IAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALI 112 >gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3 # Family: family:all:169 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958058;genbank:gi:41057355;genbank:GeneID :2744226 Length = 589 Score = 30.0 bits (66), Expect = 0.075, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Query: 404 LVACGDMTIVRR---VGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIP 459 +V+ G ++ R G D A AE +RR+ E +++IGID +G+G + L + P Sbjct: 433 VVSGGKFRMLERHQWKGMDFAAQAEGIRRLTEKYNVEYIGIDATGLGLGVFQLVRSFYP 491 >gi|11877|lcl|protein:vir:79128 Length: 593 # NCBI annotation: terminase # Family: family:all:169 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165255;genbank:gi:145708080;genbank:Ge neID:5247139 Length = 593 Score = 30.0 bits (66), Expect = 0.080, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Query: 404 LVACGDMTIVRR---VGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPD 460 LV G ++ R G D E A +RR+ E + ++GID +G+G + L + PD Sbjct: 438 LVPGGKFRVLERHQFRGIDYEEQAGAIRRVAERYDVAYVGIDRTGIGDAVFRLVQKFRPD 497 Query: 461 G 461 Sbjct: 498 A 498 >gi|19904|lcl|protein:vir:3781 Length: 607 # NCBI annotation: terminase # Family: family:all:169 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536821;genbank:gi:17981830;genbank:GeneID :929209 Length = 607 Score = 29.3 bits (64), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 22/136 (16%) Query: 424 AEYVRRIHEAELLDHIGIDPSGVGQ-ILDSLAEAGIPDGIVVGISQGWKLGGAIKTTERK 482 A +R ++E + +IGID +GVG + + + E + + K G +K + Sbjct: 472 ANQIRALYEKYNMTYIGIDATGVGYGVYELVKEFARRAATAIIYNPESKTGMVLKVHD-- 529 Query: 483 LAEGVLVHGDQPLMAWCVGNARVEP-----------KGNAILITKQASGRGK-IDPLMAL 530 ++ HG + W + P GN + T + + + + D A+ Sbjct: 530 ----LVEHGQ---IEWSESELDIVPSFLMIKHQSTKSGNTMTFTAERTVKTQHADVFFAI 582 Query: 531 FNAVSLMSLNPEPKKK 546 NA++ SL+ +P+K+ Sbjct: 583 CNAINKKSLSDKPRKR 598 >gi|16385|lcl|protein:vir:3744 Length: 607 # NCBI annotation: orf15 # Family: family:all:169 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043485;genbank:gi:9628620;genbank:GeneID: 1261142 Length = 607 Score = 29.3 bits (64), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 22/136 (16%) Query: 424 AEYVRRIHEAELLDHIGIDPSGVGQ-ILDSLAEAGIPDGIVVGISQGWKLGGAIKTTERK 482 A +R ++E + +IGID +GVG + + + E + + K G +K + Sbjct: 472 ANQIRALYEKYNMTYIGIDATGVGYGVYELVKEFARRAATAIIYNPESKTGMVLKVHD-- 529 Query: 483 LAEGVLVHGDQPLMAWCVGNARVEP-----------KGNAILITKQASGRGK-IDPLMAL 530 ++ HG + W + P GN + T + + + + D A+ Sbjct: 530 ----LVEHGQ---IEWSESELDIVPSFLMIKHQSTKSGNTMTFTAERTVKTQHADVFFAI 582 Query: 531 FNAVSLMSLNPEPKKK 546 NA++ SL+ +P+K+ Sbjct: 583 CNAINKKSLSDKPRKR 598 >gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510983;swissprot:trembl:q8w607;genbank:gi :17488505;uniprot:Q8W607;genbank:GeneID:1260359 Length = 550 Score = 27.3 bits (59), Expect = 0.44, Method: Compositional matrix adjust. Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 13/171 (7%) Query: 383 HAWAHETAVVRRKSEASRFQ----DLVACGDMTIVR-RVGDDTAEVAEYVRRIHEAELLD 437 + + H T + + ++F+ + V G TI+ D+ + ++ + E +++ Sbjct: 376 YIFKHHTFICAESLKITKFKFPIHEAVEKGLATIIHDNYIDEDYPLQWFLEQAKEHRIIN 435 Query: 438 HIGIDPSGVGQILDSLAEAGIPDGIVVGISQGWKLGGAIKTTERKL-AEGVLVHGDQPLM 496 I D + ++ AG P ++ + G + + KL A ++ GD LM Sbjct: 436 -IATDSFRYKSLKEAFTSAGAP---LIQVRSGPYSHNRLSSMVDKLFASHKIIFGDDMLM 491 Query: 497 AWCVGNA--RVEPKGNAILITKQASGRGKIDPLMALFNAVSLMSLNPEPKK 545 W N + + +G I + R K D AL + + L PE ++ Sbjct: 492 RWYCNNVAIKFDARGEKTYIKIEPKTR-KTDGFFALLHTLMLDEELPETRE 541 >gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111154;genbank:gi:134288710;genbank:Ge neID:4960655 Length = 601 Score = 26.2 bits (56), Expect = 0.96, Method: Compositional matrix adjust. Identities = 14/51 (27%), Positives = 24/51 (47%) Query: 417 GDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDGIVVGIS 467 G+D E A + I + + +I ID +G+GQ + L P + + S Sbjct: 461 GNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAAVALNYS 511 >gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: phage terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293751;genbank:gi:72537721;genbank:GeneID :3608097 Length = 601 Score = 26.2 bits (56), Expect = 0.98, Method: Compositional matrix adjust. Identities = 14/51 (27%), Positives = 24/51 (47%) Query: 417 GDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDGIVVGIS 467 G+D E A + I + + +I ID +G+GQ + L P + + S Sbjct: 461 GNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAAVALNYS 511 >gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111035;genbank:gi:134288784;genbank:Ge neID:4960696 Length = 589 Score = 26.2 bits (56), Expect = 1.0, Method: Compositional matrix adjust. Identities = 14/51 (27%), Positives = 24/51 (47%) Query: 417 GDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDGIVVGIS 467 G+D E A + I + + +I ID +G+GQ + L P + + S Sbjct: 449 GNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAAVALNYS 499 >gi|18781|lcl|protein:vir:7429 Length: 581 # NCBI annotation: gp6 # Family: family:all:147 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818544;genbank:gi:29566981;genbank:GeneID :1260231 Length = 581 Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust. Identities = 12/40 (30%), Positives = 18/40 (45%) Query: 42 LRIVDAPGSPTFGESCAPWVFDLVAALFGSYDAQTGVRHI 81 L++ + P F + A D V +F YD T VR + Sbjct: 293 LQLANDQTIPEFNQEIAAEFTDFVGKVFKEYDEDTHVREL 332 >gi|3950|lcl|protein:vir:103876 Length: 256 # NCBI annotation: hypothetical protein # Family: family:all:616 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938248;genbank:gi:38229153;genbank:GeneID :2648191 Length = 256 Score = 24.3 bits (51), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 10/50 (20%) Query: 24 PAPIYPDQAAHALAIFKQLRIVDAPGSPT---------FGESCAPWVFDL 64 PAP P +AA+ A KQ+ + AP PT E AP + +L Sbjct: 157 PAPTQPFKAAYEYAATKQVGMFTAP-QPTVALRYKGINLAEGGAPVIVEL 205 >gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817768;genbank:gi:29566200;genbank:GeneID :1259404 Length = 564 Score = 24.3 bits (51), Expect = 4.1, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 119 LAPTVEVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRV 160 LAP + A H + D V R L C+V T RT+ +++ Sbjct: 460 LAPQMPFAIHKWTAKGDAVGRSALLRQACEVGT-CRTVEYKL 500 >gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655687;genbank:gi:109521765;genbank:GeneI D:4157805 Length = 566 Score = 24.3 bits (51), Expect = 4.2, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 119 LAPTVEVAAHAFNPARDMVRRDDDLDDLCQVQTHIRTITHRV 160 LAP + A H + D V R L C+V T RT+ +++ Sbjct: 462 LAPQMPFAIHKWTAKGDAVGRSALLRQACEVGT-CRTVEYKL 502 >gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unknown # Family: family:all:4926 # MgeID: mge:13 # MgeName: SPBc2 # Cross-refs: genbank:acc:NP_046608;genbank:gi:9630181;genbank:GeneID: 1261423 Length = 589 Score = 23.5 bits (49), Expect = 7.5, Method: Compositional matrix adjust. Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 416 VGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQ-ILDSLAE 455 VG T A +R+I+E D+I +D +G + D+L + Sbjct: 386 VGGHTGTQATRIRQIYEDYDCDYIVLDTQSIGLGVYDALCQ 426 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.321 0.137 0.420 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 252,152 Number of Sequences: 514 Number of extensions: 11407 Number of successful extensions: 157 Number of sequences better than 100.0: 77 Number of HSP's better than 100.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 93 length of query: 553 length of database: 206,069 effective HSP length: 76 effective length of query: 477 effective length of database: 167,005 effective search space: 79661385 effective search space used: 79661385 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)