Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiCP39-O | Genbank acc : NC_011318

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 62

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	14	lcl\|NC_011318.1_cdsid_YP_002265422.1	HHsearch (proba=100.00%)
Portal	5	lcl\|NC_011318.1_cdsid_YP_002265413.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_011318.1_cdsid_YP_002265410.1	Blast (e-value=4e-71)
MTP	19	lcl\|NC_011318.1_cdsid_YP_002265427.1	Blast (e-value=6e-05)
Sheath	NOT FOUND
Ad1	16	lcl\|NC_011318.1_cdsid_YP_002265424.1	HHsearch (proba=96.02%)
Hc1	17	lcl\|NC_011318.1_cdsid_YP_002265425.1	HHsearch (proba=90.57%)
Ne1	6	lcl\|NC_011318.1_cdsid_YP_002265414.1	HHsearch (proba=98.00%)
Tc1	18	lcl\|NC_011318.1_cdsid_YP_002265426.1	HHsearch (proba=81.34%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Hc1	11	2
Ne1<->Ad1	10	3
Ne1<->Tc1	12	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:102605 protein:vir:105822 protein:vir:7990	Llij PMC Che8	33 % 33 % 33 %
Portal	protein:vir:94666	mu1/6	24 %
TermL	protein:vir:96840 protein:vir:97448 protein:vir:96300	EW 92 ROSA	37 % 35 % 35 %
MTP	protein:vir:78053 protein:vir:79254 protein:vir:99006	P35 Phage MP22 Wildcat	23 % 12 % 9 %
Ad1	protein:vir:78068 protein:vir:97329 protein:vir:94798	P35 52A 29	20 % 30 % 30 %
Hc1	protein:vir:5977 protein:vir:100134 protein:vir:80342	SPP1 phi1026b phi644-2	13 % 11 % 16 %
Ne1	protein:vir:78077 protein:vir:107099 protein:vir:96829	P35 CNPH82 EW	23 % 24 % 23 %
Tc1	protein:vir:1438 protein:vir:100116	phiE125 phi1026b	12 % 12 %