Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 14 lcl|NC_011318.1_cdsid_YP_002265422.1 HHsearch (proba=100.00%)
Portal 5 lcl|NC_011318.1_cdsid_YP_002265413.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_011318.1_cdsid_YP_002265410.1 Blast (e-value=4e-71)
MTP 19 lcl|NC_011318.1_cdsid_YP_002265427.1 Blast (e-value=6e-05)
Sheath NOT FOUND
Ad1 16 lcl|NC_011318.1_cdsid_YP_002265424.1 HHsearch (proba=96.02%)
Hc1 17 lcl|NC_011318.1_cdsid_YP_002265425.1 HHsearch (proba=90.57%)
Ne1 6 lcl|NC_011318.1_cdsid_YP_002265414.1 HHsearch (proba=98.00%)
Tc1 18 lcl|NC_011318.1_cdsid_YP_002265426.1 HHsearch (proba=81.34%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ne1<->Hc1 11 2
Ne1<->Ad1 10 3
Ne1<->Tc1 12 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:102605
protein:vir:105822
protein:vir:7990
Llij
PMC
Che8
33 %
33 %
33 %
Portal protein:vir:94666mu1/624 %
TermL protein:vir:96840
protein:vir:97448
protein:vir:96300
EW
92
ROSA
37 %
35 %
35 %
MTP protein:vir:78053
protein:vir:79254
protein:vir:99006
P35
Phage MP22
Wildcat
23 %
12 %
9 %
Ad1 protein:vir:78068
protein:vir:97329
protein:vir:94798
P35
52A
29
20 %
30 %
30 %
Hc1 protein:vir:5977
protein:vir:100134
protein:vir:80342
SPP1
phi1026b
phi644-2
13 %
11 %
16 %
Ne1 protein:vir:78077
protein:vir:107099
protein:vir:96829
P35
CNPH82
EW
23 %
24 %
23 %
Tc1 protein:vir:1438
protein:vir:100116
phiE125
phi1026b
12 %
12 %