Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : P40 | Genbank acc : NC_011308

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 62

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|NC_011308.1_cdsid_YP_002261422.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_011308.1_cdsid_YP_002261419.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_011308.1_cdsid_YP_002261418.1	Blast (e-value=1e-117)
MTP	11	lcl\|NC_011308.1_cdsid_YP_002261427.1	Blast (e-value=5e-94)
Sheath	NOT FOUND
Ad1	7	lcl\|NC_011308.1_cdsid_YP_002261423.1	HHsearch (proba=100.00%)
Hc1	8	lcl\|NC_011308.1_cdsid_YP_002261424.1	HHsearch (proba=100.00%)
Ne1	9	lcl\|NC_011308.1_cdsid_YP_002261425.1	HHsearch (proba=100.00%)
Tc1	10	lcl\|NC_011308.1_cdsid_YP_002261426.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:78090 protein:vir:102335 protein:vir:78920	P35 phi CD119 A006	56 % 31 % 30 %
Portal	protein:vir:78083 protein:vir:79043 protein:vir:5961	P35 phiC2 SPP1	56 % 25 % 22 %
TermL	protein:vir:78055 protein:vir:96840 protein:vir:107098	P35 EW CNPH82	47 % 34 % 34 %
MTP	protein:vir:78053 protein:vir:102193 protein:vir:101512	P35 PBI1 PLot	51 % 20 % 20 %
Ad1	protein:vir:78068 protein:vir:97329 protein:vir:96281	P35 52A ROSA	50 % 18 % 18 %
Hc1	protein:vir:78048 protein:vir:81177 protein:vir:4459	P35 Geobacillus virus E2 ST64B	58 % 14 % 14 %
Ne1	protein:vir:78077 protein:vir:97327 protein:vir:95062	P35 52A X2	60 % 25 % 25 %
Tc1	protein:vir:78057 protein:vir:3972 protein:vir:1244	P35 ul36 phi ETA	64 % 15 % 12 %