Virfam_CNT_anal:NC_011270

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Spud | Genbank acc : NC_011270

Category to which the Query Phage was assigned :

The queried phage was recognized as a Myoviridae
but could not be further assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 222

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	94	lcl\|NC_011270.1_cdsid_YP_002224348.1	HHsearch (proba=98.89%)
Portal	85	lcl\|NC_011270.1_cdsid_YP_002224339.1	HHsearch (proba=100.00%)
TermL	210	lcl\|NC_011270.1_cdsid_YP_002224464.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	121	lcl\|NC_011270.1_cdsid_YP_002224375.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	119	lcl\|NC_011270.1_cdsid_YP_002224373.1	HHsearch (proba=76.27%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96833 protein:vir:9820 protein:vir:3033	EW 315.4 PhiNIH1.1	18 % 17 % 17 %
Portal	protein:vir:105154 protein:vir:95542 protein:vir:79538	C-St F10 cdtI	15 % 17 % 15 %
TermL	protein:vir:107279 protein:vir:7745 protein:vir:98727	Catera Bxz1 Ma-LMM01	99 % 99 % 19 %
Sheath	protein:vir:107310 protein:vir:7653 protein:vir:100829	Catera Bxz1 LP65	100 % 100 % 18 %
Ne1	protein:vir:97982 protein:vir:107545 protein:vir:94654	Orion PG1 mu1/6	22 % 22 % 30 %