Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : F10 | Genbank acc : NC_007805 | Aclame index mge :1574

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 6) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 63

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|Aclame:protein:vir:95512\|NCBI_annot:Putative	HHsearch (proba=100.00%)
Portal	4	lcl\|Aclame:protein:vir:95542\|NCBI_annot:Putative	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:95489\|NCBI_annot:Putative	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	3	lcl\|Aclame:protein:vir:95499\|NCBI_annot:hypothetical	HHsearch (proba=99.95%)
Hc1	NOT FOUND
Ne1	63	lcl\|Aclame:protein:vir:95539\|NCBI_annot:hypothetical	HHsearch (proba=99.30%)
Tc1	8	lcl\|Aclame:protein:vir:95519\|NCBI_annot:hypothetical	HHsearch (proba=90.86%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Ad1	5	4
Ne1<->Ad1	60	3
Ne1<->Tc1	55	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79548 protein:vir:79246 protein:vir:99228	cdtI Phage MP22 DMS3	58 % 23 % 23 %
Portal	protein:vir:79538 protein:vir:96738 protein:vir:10321	cdtI VP882 VHML	48 % 24 % 21 %
TermL	protein:vir:387 protein:vir:3418 protein:vir:10320	N15 lambda VHML	50 % 48 % 30 %
Ad1	protein:vir:79544 protein:vir:96750 protein:vir:3419	cdtI VP882 lambda	51 % 26 % 24 %
Ne1	protein:vir:396 protein:vir:96763 protein:vir:3427	N15 VP882 lambda	17 % 17 % 17 %
Tc1	protein:vir:6374	BcepNazgul	18 %