Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : LP65 | Genbank acc : NC_006565 | Aclame index mge :1633

Category to which the Query Phage was assigned :

The queried phage was recognized as a Myoviridae of Type1 (Read more about that Type)
Note that only the Adaptor was detected unambiguously

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 165

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	109	lcl\|Aclame:protein:vir:100851\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	112	lcl\|Aclame:protein:vir:100691\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	113	lcl\|Aclame:protein:vir:100809\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	102	lcl\|Aclame:protein:vir:100800\|NCBI_annot:hypothetical	Blast (e-value=3e-88)
Sheath	103	lcl\|Aclame:protein:vir:100829\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad1	108	lcl\|Aclame:protein:vir:100737\|NCBI_annot:hypothetical	HHsearch (proba=97.98%)
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:100851 protein:vir:99311 protein:vir:95603	LP65 K G1	100 % 43 % 43 %
Portal	protein:vir:100691 protein:vir:80644 protein:vir:96579	LP65 A511 Twort	100 % 32 % 32 %
TermL	protein:vir:100809 protein:vir:80755 protein:vir:80633	LP65 phiEF24C A511	100 % 38 % 33 %
MTP	protein:vir:100800 protein:vir:80620 protein:vir:63764	LP65 A511 P100	100 % 56 % 55 %
Sheath	protein:vir:100829 protein:vir:80488 protein:vir:63742	LP65 A511 P100	100 % 36 % 36 %
Ad1	protein:vir:80320 protein:vir:1435 protein:vir:8104	phi644-2 phiE125 Che9c	16 % 14 % 9 %