Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PG1 | Genbank acc : NC_005259 | Aclame index mge :1481

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 100

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	NOT FOUND
Portal	8	lcl\|Aclame:protein:vir:107517\|NCBI_annot:gp8\|genbank:acc:NP_943786;genbank:gi:38638411;genbank:GeneI	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:107494\|NCBI_annot:gp2\|genbank:acc:NP_943780;genbank:gi:38638405;genbank:GeneI	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	22	lcl\|Aclame:protein:vir:107532\|NCBI_annot:gp22\|genbank:acc:NP_943800;genbank:gi:38638425;genbank:Gene	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	25	lcl\|Aclame:protein:vir:107545\|NCBI_annot:gp25\|genbank:acc:NP_943803;genbank:gi:38638428;genbank:Gene	HHsearch (proba=100.00%)
Tc1	23	lcl\|Aclame:protein:vir:107514\|NCBI_annot:gp23\|genbank:acc:NP_943801;genbank:gi:38638426;genbank:Gene	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
Portal	protein:vir:97900 protein:vir:107517 protein:vir:106027	Orion PG1 Cooper	100 % 100 % 55 %
TermL	protein:vir:97894 protein:vir:107494 protein:vir:106049	Orion PG1 Cooper	100 % 100 % 66 %
Ad1	protein:vir:97979 protein:vir:107532 protein:vir:106038	Orion PG1 Cooper	100 % 100 % 59 %
Ne1	protein:vir:97982 protein:vir:107545 protein:vir:106041	Orion PG1 Cooper	100 % 100 % 66 %
Tc1	protein:vir:97980 protein:vir:107514 protein:vir:106039	Orion PG1 Cooper	100 % 100 % 64 %