Virfam_CNT_anal:NC_011222

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : B40-8 | Genbank acc : NC_011222

Category to which the Query Phage was assigned :

The phage most likely belong to the Siphoviridae class
However, some subunits are missing to confidently assign it to one of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 46

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	43	lcl\|NC_011222.1_cdsid_YP_002221581.1	HHsearch (proba=95.06%)
Portal	40	lcl\|NC_011222.1_cdsid_YP_002221578.1	HHsearch (proba=98.93%)
TermL	38	lcl\|NC_011222.1_cdsid_YP_002221576.1	Blast (e-value=9e-40)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	45	lcl\|NC_011222.1_cdsid_YP_002221583.1	HHsearch (proba=93.08%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96123 protein:vir:9820 protein:vir:3033	37 315.4 PhiNIH1.1	14 % 15 % 15 %
Portal	protein:vir:94956 protein:vir:97265 protein:vir:95149	Xp15 M6 PA73	16 % 12 % 14 %
TermL	protein:vir:102358 protein:vir:3608 protein:vir:3963	phi CD119 TP901-1 ul36	31 % 30 % 30 %
Ne1	protein:vir:79091 protein:vir:99833 protein:vir:103841	phiE255 B3 D3112	21 % 15 % 12 %