BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_011222.1_cdsid_YP_002221576.1 [gene=B40-8038] [protein=putative large subunit phage terminase] [protein_id=YP_002221576.1] [location=36086..37279] (397 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: put... 155 9e-40 gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unkn... 155 1e-39 gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL ... 154 2e-39 gi|5633|lcl|protein:vir:102358 Length: 322 # NCBI annotation: pu... 117 2e-28 gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: put... 99 1e-22 gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp... 84 2e-18 gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 ... 84 2e-18 gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: Te... 84 2e-18 gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp... 84 2e-18 gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7... 79 8e-17 gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7... 79 1e-16 gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2... 79 1e-16 gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp... 79 1e-16 gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: put... 75 1e-15 gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: Te... 70 5e-14 gi|3011|lcl|protein:vir:106049 Length: 583 # NCBI annotation: gp... 65 1e-12 gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp... 50 4e-08 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 29 0.076 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 29 0.083 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 29 0.083 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 29 0.083 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 29 0.083 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 29 0.083 gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DN... 28 0.17 gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DN... 27 0.40 gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA... 27 0.42 gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: mat... 26 0.66 gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA... 26 0.67 gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA... 26 0.69 gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA... 26 0.70 gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA... 26 0.80 gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA... 26 0.84 gi|9490|lcl|protein:vir:104081 Length: 594 # NCBI annotation: gp... 25 2.3 gi|11995|lcl|protein:vir:79222 Length: 591 # NCBI annotation: hy... 24 3.5 gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF... 23 4.3 gi|19904|lcl|protein:vir:3781 Length: 607 # NCBI annotation: ter... 23 7.8 gi|655|lcl|protein:vir:1588 Length: 447 # NCBI annotation: putat... 23 8.0 gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: g... 23 8.2 >gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663671;genbank:gi:21716108;genbank:GeneID :951204 Length = 462 Score = 155 bits (392), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 115/342 (33%), Positives = 170/342 (49%), Gaps = 47/342 (13%) Query: 44 ISVGRNGSLTGKSVDIAILDDLYKDHMEANSPIIREAAWKWYTTVVTTRLHNNSQQLIVF 103 ++ G+ TG DI I+DD+ K+ EAN+ + E W W+ + +RL + + +I Sbjct: 146 LATSPTGTATGFGADIIIIDDVIKNAEEANNATVLEKHWDWFVNTMLSRLESGGKIIINM 205 Query: 104 TRWHKDDLIGRIEDKENVINVEKWADLDNIPEGAW-VK-INFPALKVGEPTEIDPRLPGE 161 TRWH +DL GR L +P+ + VK INF A + + L + Sbjct: 206 TRWHSEDLAGRA--------------LRELPKNGYRVKHINFKAFN----EQTNEMLCDD 247 Query: 162 ALWEEKHSAKKLNAQRELDRNEFECLNQGNPGSAEGTLYGNFKTYTDKNDFGVLVGRGNY 221 L E + K ++ + Q P +G LY F+TY ++++ + NY Sbjct: 248 VLTLEDYKRKVKTMGADIASANY----QQEPIDVKGRLYSEFQTYNARSEYKKI---WNY 300 Query: 222 TDCADTGSDYLCSVCYDKYQSKEAVWNEKERRYKHLIFCLVTDIVYTTAPIEETQVSVPN 281 D ADTG DYLCS+ VW E F V DI+YT P+E T+ +V N Sbjct: 301 CDTADTGKDYLCSI----------VWGETSDG-----FADVLDIIYTQKPMEYTENAVAN 345 Query: 282 MLNMNSTDYAYIESNNGGRSFAVNISPRTKAEINW----FCQRLNKEARILSNAANVIQS 337 L N + + IE NNGGRSFA ++ + + ++ F Q NKEARI SN+ + Q Sbjct: 346 QLINNRVNASRIERNNGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSYWIEQH 405 Query: 338 IVMPYGWESRFPKFHEHITNYLREFSANKHDDAADVLTGIVE 379 + +P W +RFP++++ +T Y RE NKHDDA D TGI E Sbjct: 406 VRLPNDWRTRFPEYYQAMTTYQRE-GKNKHDDAPDATTGIAE 446 >gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unknown # Family: family:all:144 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108709;genbank:gi:13487831;genbank:GeneID :920905 Length = 402 Score = 155 bits (391), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 115/336 (34%), Positives = 167/336 (49%), Gaps = 47/336 (13%) Query: 50 GSLTGKSVDIAILDDLYKDHMEANSPIIREAAWKWYTTVVTTRLHNNSQQLIVFTRWHKD 109 G+ TG DI I+DD+ K+ EAN+ + E W W+ + +RL + + +I TRWH + Sbjct: 92 GTATGFGADIIIIDDVIKNAEEANNATVLEKHWDWFVNTMLSRLESGGKIIINMTRWHSE 151 Query: 110 DLIGRIEDKENVINVEKWADLDNIPEGAW-VK-INFPALKVGEPTEIDPRLPGEALWEEK 167 DL GR L +P+ + VK INF A + + L + L E Sbjct: 152 DLAGRA--------------LRELPKNGYRVKHINFKAFN----EQTNEMLCDDVLTLED 193 Query: 168 HSAKKLNAQRELDRNEFECLNQGNPGSAEGTLYGNFKTYTDKNDFGVLVGRGNYTDCADT 227 + K ++ + Q P +G LY F+TY ++++ + NY D ADT Sbjct: 194 YKRKVKTMGADIASANY----QQEPIDVKGRLYSEFQTYNARSEYNKIW---NYCDTADT 246 Query: 228 GSDYLCSVCYDKYQSKEAVWNEKERRYKHLIFCLVTDIVYTTAPIEETQVSVPNMLNMNS 287 G DYLCS+ VW E F V DI+YT P+E T+ +V N L N Sbjct: 247 GKDYLCSI----------VWGETSDG-----FADVLDIIYTQKPMEYTENAVANQLINNR 291 Query: 288 TDYAYIESNNGGRSFAVNISPRTKAEINW----FCQRLNKEARILSNAANVIQSIVMPYG 343 + + IE NNGGRSFA ++ + + ++ F Q NKEARI SN+ + Q + P Sbjct: 292 VNASRIERNNGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSYWIEQHVRFPND 351 Query: 344 WESRFPKFHEHITNYLREFSANKHDDAADVLTGIVE 379 W +RFP++++ +T Y RE NKHDDA D TGI E Sbjct: 352 WRTRFPEYYQAMTTYQRE-GKNKHDDAPDATTGIAE 386 >gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112694;genbank:gi:13786562;genbank:GeneID :921033 Length = 462 Score = 154 bits (389), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 115/342 (33%), Positives = 169/342 (49%), Gaps = 47/342 (13%) Query: 44 ISVGRNGSLTGKSVDIAILDDLYKDHMEANSPIIREAAWKWYTTVVTTRLHNNSQQLIVF 103 ++ G+ TG DI I+DD+ K+ EAN+ + E W W+ + +RL + + +I Sbjct: 146 LATSPTGTATGFGADIIIIDDVIKNAEEANNATVLEKHWDWFVNTMLSRLESGGKIIINM 205 Query: 104 TRWHKDDLIGRIEDKENVINVEKWADLDNIPEGAW-VK-INFPALKVGEPTEIDPRLPGE 161 TRWH +DL GR L +P+ + VK INF A + + L + Sbjct: 206 TRWHSEDLAGRA--------------LRELPKNGYRVKHINFKAFN----EQTNEMLCDD 247 Query: 162 ALWEEKHSAKKLNAQRELDRNEFECLNQGNPGSAEGTLYGNFKTYTDKNDFGVLVGRGNY 221 L E + K ++ + Q P +G LY F+TY ++++ + NY Sbjct: 248 VLTLEDYKRKVKTMGADIASANY----QQEPIDVKGRLYSEFQTYNARSEYKKI---WNY 300 Query: 222 TDCADTGSDYLCSVCYDKYQSKEAVWNEKERRYKHLIFCLVTDIVYTTAPIEETQVSVPN 281 D ADTG DYLCS+ VW E F V DI+YT P+E T+ +V N Sbjct: 301 CDTADTGKDYLCSI----------VWGETTDG-----FADVLDIIYTQKPMEYTENAVAN 345 Query: 282 MLNMNSTDYAYIESNNGGRSFAVNISPRTKAEINW----FCQRLNKEARILSNAANVIQS 337 L N + + IE NNGGRSFA ++ + + ++ F Q NKEARI SN+ + Q Sbjct: 346 QLINNRVNASRIERNNGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSYWIEQH 405 Query: 338 IVMPYGWESRFPKFHEHITNYLREFSANKHDDAADVLTGIVE 379 + P W +RFP++++ +T Y RE NKHDDA D TGI E Sbjct: 406 VRFPNDWRTRFPEYYQAMTTYQRE-GKNKHDDAPDATTGIAE 446 >gi|5633|lcl|protein:vir:102358 Length: 322 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529553;genbank:gi:90592639;genbank:GeneID :3974490 Length = 322 Score = 117 bits (294), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/296 (31%), Positives = 133/296 (44%), Gaps = 53/296 (17%) Query: 89 VTTRLHNNSQQLIVFTRWHKDDLIGRIEDKENVINVEKWADLDNIPEGAWVK-INFPALK 147 + +RL + +I+ TRW DL GR +E + + EG V+ IN AL+ Sbjct: 1 MLSRLEEGGKIIIIMTRWSSKDLAGRA--------LEHYKE-----EGKKVRHINMKALQ 47 Query: 148 VGEPTEIDPRLPGEALWEEKHSAKKLNAQ-RELDRNEFECLNQGNPGSAEGTLYGNFKTY 206 G L EE S ++ R + + Q P +G LY FKTY Sbjct: 48 E----------DGNMLCEEVLSLNSYKSKVRAMGEDIASANYQQEPIDLKGCLYTRFKTY 97 Query: 207 ----TDKNDFGVLVGRGNYTDCADTGSDYLCSVCYDKYQSKEAVWNEKERRYKHLIFCLV 262 D+ + Y D AD G+DYLCS+ Y V+N++ V Sbjct: 98 DKLPVDEKGNLLFTSIKAYVDTADEGADYLCSIVY-------GVYNKE---------VYV 141 Query: 263 TDIVYTTAPIEETQVSVPNMLNMNSTDYAYIESNNGGRSFAVNIS-------PRTKAEIN 315 D++YT +E T+ M N + A IESN+GGR+FA N+ K I Sbjct: 142 LDVLYTKESMETTEYKTAKMFYENEVNKADIESNSGGRAFARNVQRILKEKFKSNKTTIK 201 Query: 316 WFCQRLNKEARILSNAANVIQSIVMPYGWESRFPKFHEHITNYLREFSANKHDDAA 371 WF Q NK ARILSN++ V++ I P W R+ +++ + +Y RE NKHDDA Sbjct: 202 WFHQSKNKNARILSNSSWVMEHIYFPVNWRDRWQDYYKAMVSYQRE-GKNKHDDAC 256 >gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: putative terminase large subunit TerL # Family: family:all:144 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852753;genbank:gi:31544028;interpro:IPR00 4921;interpro:IPR006517;uniprot:Q7Y5U7;genbank:GeneID:27 53564 Length = 487 Score = 98.6 bits (244), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 127/278 (45%), Gaps = 41/278 (14%) Query: 1 MDTPEYKSLFPDTRIMGEEKKSRYQAFARNSKMTETIGKGGYIISVGRNGSLTGKSVDIA 60 +D P Y S+FP+T + + + RNS++ E +G G S G G +TG DIA Sbjct: 118 IDDPIYHSIFPNTALNIKNIATISGKPLRNSEIFEIVGHLGAYRSAGVGGGITGMGADIA 177 Query: 61 ILDDLYKDHMEANSPIIREAAWKWYTTVVTTRLHNNSQQLIVFTRWHKDDLIGRIEDKEN 120 I+DD KD EANS +R++ W WYTT + TRL S L+ TRWH+DDL GR+ Sbjct: 178 IIDDPVKDAKEANSQTVRDSIWDWYTTTLYTRLSPKSGVLLGMTRWHEDDLAGRL----- 232 Query: 121 VINVEKWADLDNIPEGAWVKINFPALKVGEPTEIDPRLPGEALWEEKHSAKKLNAQRE-L 179 + E D W + FPA + E E + R GE L E+ ++LN R+ + Sbjct: 233 IKEAENGGD-------QWRIVKFPA--IAEEDE-EFRKEGEPLHPERFDLERLNKIRQAV 282 Query: 180 DRNEFECLNQGNP-----GSAEGTLYGNFKT---------YTD-------KNDFGVLVGR 218 + L Q P G +G+ +G +K Y D ND+ V + Sbjct: 283 GSQAWNALYQQRPSNKGGGIIKGSWFGRYKVPPIIKVKAIYADTAQKTKQHNDYSVFIVA 342 Query: 219 GNYTDCADTGSDYLCSVCYDKYQSKEAVWNEKERRYKH 256 G D G Y+ + K+++ E K+ KH Sbjct: 343 GKGAD----GKAYILDLIRGKWEAPELEQTLKDVWAKH 376 >gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp19 # Family: family:all:144 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944327;genbank:gi:38638626;genbank:GeneID :2657344 Length = 507 Score = 84.3 bits (207), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 27/204 (13%) Query: 1 MDTPEYKSLFPDTRIMGEEKKSRYQAFARNSKMTETIGKGGYIISVGRNGSLTGKSVDIA 60 M P Y+++FP ++G + +++ + GG VG G LTG S+D+ Sbjct: 138 MKEPVYRAVFPHVSLIGFKG-------GKDTSNEFDVPAGGEFRGVGVGGPLTGFSIDVG 190 Query: 61 ILDDLYKDHMEANSPIIREAAWKWYTTVVTTRLHNNSQQLIVFTRWHKDDLIGRIEDKEN 120 I+DD K+ EA S ++++ WY +V+ TRL S +++ T W +DL+ R+ K Sbjct: 191 IIDDATKNAEEALSAVVQDGLENWYDSVLLTRLQQLSGVILIGTPWSANDLLARVRRK-- 248 Query: 121 VINVEKWADLDNIPEGAWVKINFPALKVGEPTEIDPRLPGEALWEEKHSAKKLNAQRELD 180 ++ P + ++FPAL + +P LP AL HSA KL RE+ Sbjct: 249 ---------MEGQPN--FTLLSFPALNDPDQIGYNPDLPLGALVPHLHSADKL---REMR 294 Query: 181 RN--EF--ECLNQGNPGSAEGTLY 200 RN EF + Q P S G ++ Sbjct: 295 RNISEFWWSAMYQQVPLSEFGAIF 318 >gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705644;genbank:gi:23752329;genbank:GeneID :955741 Length = 507 Score = 84.3 bits (207), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 27/204 (13%) Query: 1 MDTPEYKSLFPDTRIMGEEKKSRYQAFARNSKMTETIGKGGYIISVGRNGSLTGKSVDIA 60 M P Y+++FP ++G + +++ + +GG VG G LTG S+D+ Sbjct: 138 MKEPVYRAVFPHVSLIGFKGN-------KDTSNEFDVPEGGEFRGVGVGGPLTGFSIDVG 190 Query: 61 ILDDLYKDHMEANSPIIREAAWKWYTTVVTTRLHNNSQQLIVFTRWHKDDLIGRIEDKEN 120 I+DD K+ EA S ++++ WY +V+ TRL S +++ T W +DL+ R+ K Sbjct: 191 IIDDATKNAEEALSAVVQDGLENWYDSVLLTRLQQLSGVILIGTPWSANDLLARVRRK-- 248 Query: 121 VINVEKWADLDNIPEGAWVKINFPALKVGEPTEIDPRLPGEALWEEKHSAKKLNAQRELD 180 ++ P + ++FPAL + +P LP AL HSA KL RE+ Sbjct: 249 ---------MEGQPN--FTLLSFPALNDPDQIGYNPDLPLGALVPHLHSADKL---REMR 294 Query: 181 RN--EF--ECLNQGNPGSAEGTLY 200 RN EF + Q P S G ++ Sbjct: 295 RNISEFWWSAMYQQVPLSEFGAIF 318 >gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294855;genbank:gi:149882918;genbank:Ge neID:5291059 Length = 507 Score = 84.3 bits (207), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 27/204 (13%) Query: 1 MDTPEYKSLFPDTRIMGEEKKSRYQAFARNSKMTETIGKGGYIISVGRNGSLTGKSVDIA 60 M P Y+++FP ++G + +++ + GG VG G LTG S+D+ Sbjct: 138 MKEPVYRAVFPHVSLIGFKG-------GKDTSNEFDVPAGGEFRGVGVGGPLTGFSIDVG 190 Query: 61 ILDDLYKDHMEANSPIIREAAWKWYTTVVTTRLHNNSQQLIVFTRWHKDDLIGRIEDKEN 120 I+DD K+ EA S ++++ WY +V+ TRL S +++ T W +DL+ R+ K Sbjct: 191 IIDDATKNAEEALSAVVQDGLENWYDSVLLTRLQQLSGVILIGTPWSANDLLARVRRK-- 248 Query: 121 VINVEKWADLDNIPEGAWVKINFPALKVGEPTEIDPRLPGEALWEEKHSAKKLNAQRELD 180 ++ P + ++FPAL + +P LP AL HSA KL RE+ Sbjct: 249 ---------MEGQPN--FTLLSFPALNDPDQIGYNPDLPLGALVPHLHSADKL---REMR 294 Query: 181 RN--EF--ECLNQGNPGSAEGTLY 200 RN EF + Q P S G ++ Sbjct: 295 RNISEFWWSAMYQQVPLSEFGAIF 318 >gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958123;genbank:gi:41057669;genbank:GeneID :2716813 Length = 507 Score = 84.3 bits (207), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 27/204 (13%) Query: 1 MDTPEYKSLFPDTRIMGEEKKSRYQAFARNSKMTETIGKGGYIISVGRNGSLTGKSVDIA 60 M P Y+++FP ++G + +++ + +GG VG G LTG S+D+ Sbjct: 138 MKEPVYRAVFPHVSLIGFKGN-------KDTSNEFDVPEGGEFRGVGVGGPLTGFSIDVG 190 Query: 61 ILDDLYKDHMEANSPIIREAAWKWYTTVVTTRLHNNSQQLIVFTRWHKDDLIGRIEDKEN 120 I+DD K+ EA S ++++ WY +V+ TRL S +++ T W +DL+ R+ K Sbjct: 191 IIDDATKNAEEALSAVVQDGLENWYDSVLLTRLQQLSGVILIGTPWSANDLLARVRRK-- 248 Query: 121 VINVEKWADLDNIPEGAWVKINFPALKVGEPTEIDPRLPGEALWEEKHSAKKLNAQRELD 180 ++ P + ++FPAL + +P LP AL HSA KL RE+ Sbjct: 249 ---------MEGQPN--FTLLSFPALNDPDQIGYNPDLPLGALVPHLHSADKL---REMR 294 Query: 181 RN--EF--ECLNQGNPGSAEGTLY 200 RN EF + Q P S G ++ Sbjct: 295 RNISEFWWSAMYQQVPLSEFGAIF 318 >gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817768;genbank:gi:29566200;genbank:GeneID :1259404 Length = 564 Score = 79.3 bits (194), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 11/165 (6%) Query: 38 GKGGYIISVGRNGSLTGKSVDIAILDDLYKDHMEANSPIIREAAWKWYTTVVTTRLHNNS 97 G G +++ G G++TGK D+ I+DD YK EA+S R W TV TTRL + Sbjct: 182 GGSGGLVATGLGGTITGKPADLFIIDDPYKHMSEADSATYRAKVDLWMATVATTRLAPGA 241 Query: 98 QQLIVFTRWHKDDLIGRIEDKENVINVEKWADLDNIPEGAWVKINFPALKVGEPTEIDPR 157 +++ TRWH +DL G++ E + + K + W IN PA+ + R Sbjct: 242 PTILIQTRWHPEDLAGKVLTAE--LELPK-------AQRTWRHINIPAIAEEGIKDALDR 292 Query: 158 LPGEALWEEKHSAKKL--NAQRELDRNEFECLNQGNPGSAEGTLY 200 PGEA+ + K+ +R++ + + QG+P + G L+ Sbjct: 293 APGEAMVSARGRTKEQFEATKRKVGDRVWYAMYQGSPTNPAGGLF 337 >gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655687;genbank:gi:109521765;genbank:GeneI D:4157805 Length = 566 Score = 78.6 bits (192), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 11/165 (6%) Query: 38 GKGGYIISVGRNGSLTGKSVDIAILDDLYKDHMEANSPIIREAAWKWYTTVVTTRLHNNS 97 G G +++ G G++TGK D+ I+DD YK EA+S R W TV TTRL + Sbjct: 184 GGTGGLVATGLGGTITGKPADLFIIDDPYKHMSEADSATYRAKVDLWMATVATTRLAPGA 243 Query: 98 QQLIVFTRWHKDDLIGRIEDKENVINVEKWADLDNIPEGAWVKINFPALKVGEPTEIDPR 157 +++ TRWH +DL G++ E + + K + W IN PA+ + R Sbjct: 244 PTILIQTRWHPEDLAGKVLTAE--LELPK-------AQRTWRHINIPAIAEEGIKDALDR 294 Query: 158 LPGEALWEEKHSAKKL--NAQRELDRNEFECLNQGNPGSAEGTLY 200 PGEA+ + K+ +R++ + + QG+P + G L+ Sbjct: 295 APGEAMVSARGRTKEQFEATKRKVGDRVWYAMYQGSPTNPAGGLF 339 >gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655098;genbank:gi:109391848;genbank:GeneI D:4157257 Length = 595 Score = 78.6 bits (192), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 20/170 (11%) Query: 38 GKGGYIISVGRNGSLTGKSVDIAILDDLYKDHMEANSPIIREAAWKWYTTVVTTRLHNNS 97 G+GG +++ G LTG D+ I+DD +K+ MEA+S + R+ +W+++V TRL ++ Sbjct: 201 GRGG-LVAAGIGSRLTGMPADLMIIDDPFKNMMEADSALYRKRVDEWFSSVARTRLAPDA 259 Query: 98 QQLIVFTRWHKDDLIGRIEDKENVINVEKWADLDNIP--EGAWVKINFPAL-KVGEPTEI 154 +++ TRWH +DL G+ VI E+ ++P E W IN PA+ + G P + Sbjct: 260 SIIMIQTRWHPEDLAGK------VIAAER-----SLPRNERTWRVINIPAIAEKGIPDAL 308 Query: 155 DPRLPGEALWEEKHS--AKK--LNAQRELDRNEFECLNQGNPGSAEGTLY 200 R PG + + + AK+ +RE+ + L QG+P + EG ++ Sbjct: 309 K-REPGTPMVSARDTPEAKRNFPKIRREVGERTWYALYQGSPRNPEGGIF 357 >gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943780;genbank:gi:38638405;genbank:GeneID :2657174 Length = 595 Score = 78.6 bits (192), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 20/170 (11%) Query: 38 GKGGYIISVGRNGSLTGKSVDIAILDDLYKDHMEANSPIIREAAWKWYTTVVTTRLHNNS 97 G+GG +++ G LTG D+ I+DD +K+ MEA+S + R+ +W+++V TRL ++ Sbjct: 201 GRGG-LVAAGIGSRLTGMPADLMIIDDPFKNMMEADSALYRKRVDEWFSSVARTRLAPDA 259 Query: 98 QQLIVFTRWHKDDLIGRIEDKENVINVEKWADLDNIP--EGAWVKINFPAL-KVGEPTEI 154 +++ TRWH +DL G+ VI E+ ++P E W IN PA+ + G P + Sbjct: 260 SIIMIQTRWHPEDLAGK------VIAAER-----SLPRNERTWRVINIPAIAEKGIPDAL 308 Query: 155 DPRLPGEALWEEKHS--AKK--LNAQRELDRNEFECLNQGNPGSAEGTLY 200 R PG + + + AK+ +RE+ + L QG+P + EG ++ Sbjct: 309 K-REPGTPMVSARDTPEAKRNFPKIRREVGERTWYALYQGSPRNPEGGIF 357 >gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453630;genbank:gi:84662666;genbank:GeneID :5142566 Length = 483 Score = 75.5 bits (184), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 94/210 (44%), Gaps = 38/210 (18%) Query: 1 MDTPEYKSLFPDTRIMG-EEKKSRYQAFARNSKMTETIGKGGYIISVGRNGSLTGKSVDI 59 M P Y+ +FP ++ + ++ Y F G+I + G GSLTG S+D+ Sbjct: 113 MCEPIYREIFPHASMLTFKGGRNTYDYFDHPY---------GFIKAQGVGGSLTGFSIDV 163 Query: 60 AILDDLYKDHMEANSPIIREAAWKWYTTVVTTRLHNNSQQLIVFTRWHKDDLIGRI---- 115 + DDL D +A S +++ WY TV TTRL S Q+ + T W +D++ RI Sbjct: 164 GLNDDLTADAQDALSQTVQDGHQDWYATVFTTRLQQRSGQINMGTPWSANDIMARIKKVH 223 Query: 116 EDKENVINVEKWADLDNIPEGAWVKINFPALKVGEPTEIDPRLPGEALWEEKHSAKKLNA 175 E K N + ++++PAL DP L AL E HS +KL Sbjct: 224 EGKPN-----------------YRRLSYPALNYPGEIGYDPDLREGALVPELHSEEKL-- 264 Query: 176 QRELDRNEFE----CLNQGNPGSAEGTLYG 201 RE+ + E + Q P S G ++G Sbjct: 265 -REIKASMSEAWWAAMYQQAPMSEMGAIFG 293 >gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468706;genbank:gi:157325286;genbank:Ge neID:5601797 Length = 486 Score = 69.7 bits (169), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 19/163 (11%) Query: 40 GGYIISVGRNGSLTGKSVDIAILDDLYKDHMEANSPIIREAAWKWYTTVVTTRLHNNSQQ 99 GG + S G TG+ D+ I+DD K+ EA S IR+ ++ + + TRLH Sbjct: 144 GGGMYSTSMLGGATGRGADLLIIDDPIKNREEAESKTIRDKIYQEWESTFFTRLHKGHSV 203 Query: 100 LIVFTRWHKDDLIGRIEDKENVINVEKWADLDNIPEGAWVKINFPALKVGEPTEIDPRLP 159 +++ TRWH+DDLIGR+ K N + W +I PA + E ++ R Sbjct: 204 IVIMTRWHEDDLIGRLL-KANTL--------------PWERIRLPA--IAEENDLLGREI 246 Query: 160 GEALWEEKHSAKKLN--AQRELDRNEFECLNQGNPGSAEGTLY 200 G+AL E ++ ++ + + L Q P AEG ++ Sbjct: 247 GQALCPELGYNEEWAEITKKTVGSRTWASLYQQRPRPAEGAIF 289 >gi|3011|lcl|protein:vir:106049 Length: 583 # NCBI annotation: gp4 # Family: family:all:144 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654901;genbank:gi:109392357;genbank:GeneI D:4157077 Length = 583 Score = 65.1 bits (157), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 36/218 (16%) Query: 51 SLTGKSVDIAILDDLYKDHMEANSPIIREAAWKWYTTVVTTRLHNNSQQLIVFTRWHKDD 110 ++TG D+ I+DD +K+ MEA+S R W+++V TRL ++ +++ TRWH +D Sbjct: 210 TITGMPADLLIIDDPFKNMMEADSATHRANVELWFSSVALTRLAPDASIILIQTRWHPED 269 Query: 111 LIGRIEDKENVINVEKWADLDNIPEGAWVKINFPAL-KVGEPTEIDPRLPGEALWEEKHS 169 L G++ E ++ + E W +N PA+ + G P + R G + + + Sbjct: 270 LAGKVLAGEKLLEPD---------ERTWRHLNIPAIAEEGIPDALK-RPYGTPMVSARDT 319 Query: 170 --AKKLNAQ--RELDRNEFECLNQGNPGSAEGTLYGNF---------KTYTDKNDFGVLV 216 AK+ AQ +++ + L QG+P + G ++ TY + G+ Sbjct: 320 DEAKRNFAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWFDPRLPQPPTYPAASVVGI-- 377 Query: 217 GRGNYTDCADTG----SDYLCSVCYDKYQSKEAVWNEK 250 D AD+G + +C Y +K A+ +++ Sbjct: 378 ------DPADSGEGDETGIVCGALYHDGMAKVALTHDR 409 >gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp6 # Family: family:all:144 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655283;genbank:gi:109521846;genbank:GeneI D:4157717 Length = 807 Score = 50.4 bits (119), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 41/65 (63%) Query: 38 GKGGYIISVGRNGSLTGKSVDIAILDDLYKDHMEANSPIIREAAWKWYTTVVTTRLHNNS 97 G G +++ G ++TGKS D+ I+DD +K+ +EA+S RE +W+ +V +TRL + Sbjct: 170 GAIGGMVAAGLGSAITGKSADLFIIDDPFKNMIEADSTRHREKVNEWFASVASTRLSPEA 229 Query: 98 QQLIV 102 +++ Sbjct: 230 SMILI 234 Score = 32.7 bits (73), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 12/100 (12%) Query: 104 TRWHKDDLIGRIEDKENVINVEKWADLDNIPEGAWVKINFPAL-KVGEPTEIDPRLPGEA 162 TRWH +DL G I E +++ E + W IN PA+ + G P + PG Sbjct: 490 TRWHPEDLSGTIIAGEKLLDAE---------DRTWRHINVPAVSEEGIPDALGRPEPGIP 540 Query: 163 LWEEK-HSAKKLNAQRE-LDRNEFECLNQGNPGSAEGTLY 200 + + + ++ N R+ + + L QG+P + G L+ Sbjct: 541 MISARGRTLREFNQTRKSVGERVWYALYQGSPRNPAGGLF 580 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 29.3 bits (64), Expect = 0.076, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 7/66 (10%) Query: 199 LYGNFKTYTDKNDFGVLVGRGNYTDCADTGSDYLCSVCYDKYQSKEAVWNEKERRYKHLI 258 +Y FKT G+ + + T T D L S Y +Y+ + + NE+ R + + Sbjct: 210 MYSRFKT-------GMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFV 262 Query: 259 FCLVTD 264 +C D Sbjct: 263 YCAEMD 268 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 29.3 bits (64), Expect = 0.083, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 7/66 (10%) Query: 199 LYGNFKTYTDKNDFGVLVGRGNYTDCADTGSDYLCSVCYDKYQSKEAVWNEKERRYKHLI 258 +Y FKT G+ + + T T D L S Y +Y+ + + NE+ R + + Sbjct: 210 MYSRFKT-------GMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFV 262 Query: 259 FCLVTD 264 +C D Sbjct: 263 YCAEMD 268 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 29.3 bits (64), Expect = 0.083, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 7/66 (10%) Query: 199 LYGNFKTYTDKNDFGVLVGRGNYTDCADTGSDYLCSVCYDKYQSKEAVWNEKERRYKHLI 258 +Y FKT G+ + + T T D L S Y +Y+ + + NE+ R + + Sbjct: 210 MYSRFKT-------GMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFV 262 Query: 259 FCLVTD 264 +C D Sbjct: 263 YCAEMD 268 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 29.3 bits (64), Expect = 0.083, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 7/66 (10%) Query: 199 LYGNFKTYTDKNDFGVLVGRGNYTDCADTGSDYLCSVCYDKYQSKEAVWNEKERRYKHLI 258 +Y FKT G+ + + T T D L S Y +Y+ + + NE+ R + + Sbjct: 210 MYSRFKT-------GMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFV 262 Query: 259 FCLVTD 264 +C D Sbjct: 263 YCAEMD 268 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 29.3 bits (64), Expect = 0.083, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 7/66 (10%) Query: 199 LYGNFKTYTDKNDFGVLVGRGNYTDCADTGSDYLCSVCYDKYQSKEAVWNEKERRYKHLI 258 +Y FKT G+ + + T T D L S Y +Y+ + + NE+ R + + Sbjct: 210 MYSRFKT-------GMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFV 262 Query: 259 FCLVTD 264 +C D Sbjct: 263 YCAEMD 268 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 29.3 bits (64), Expect = 0.083, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 7/66 (10%) Query: 199 LYGNFKTYTDKNDFGVLVGRGNYTDCADTGSDYLCSVCYDKYQSKEAVWNEKERRYKHLI 258 +Y FKT G+ + + T T D L S Y +Y+ + + NE+ R + + Sbjct: 210 MYSRFKT-------GMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFV 262 Query: 259 FCLVTD 264 +C D Sbjct: 263 YCAEMD 268 >gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DNA maturase beta subunit # Family: family:all:697 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214228;genbank:gi:61806451;genbank:GeneID :3294745 Length = 577 Score = 28.1 bits (61), Expect = 0.17, Method: Compositional matrix adjust. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 45 SVGRNGSLTGKSVDIAILDDL 65 SVG G LTG D+ ILDD+ Sbjct: 134 SVGITGQLTGSRADLMILDDI 154 >gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DNA maturase B # Family: family:all:697 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848309;genbank:gi:30387500;genbank:GeneID :1733974 Length = 586 Score = 26.9 bits (58), Expect = 0.40, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Query: 45 SVGRNGSLTGKSVDIAILDDLYKDHMEANSPII--REAAW 82 SVG G LTG DI I DD+ + +NS + RE W Sbjct: 142 SVGITGQLTGSRADIIIADDV---EIPSNSATMGAREKLW 178 >gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA maturation protein # Family: family:all:697 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_042010;swissprot:sw:p03694;genbank:gi:962 7482;goa:P03694;uniprot:P03694;genbank:GeneID:1261062 Length = 586 Score = 26.9 bits (58), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Query: 45 SVGRNGSLTGKSVDIAILDDLYKDHMEANSPII--REAAW 82 SVG G LTG DI I DD+ + +NS + RE W Sbjct: 142 SVGITGQLTGSRADIIIADDV---EIPSNSATMGAREKLW 178 >gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: maturation protein # Family: family:all:697 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338131;genbank:gi:77118209;genbank:GeneID :3707752 Length = 575 Score = 26.2 bits (56), Expect = 0.66, Method: Compositional matrix adjust. Identities = 12/23 (52%), Positives = 14/23 (60%) Query: 43 IISVGRNGSLTGKSVDIAILDDL 65 + SVG G LTG DI I DD+ Sbjct: 130 VKSVGITGQLTGSRADILIADDV 152 >gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249597;genbank:gi:68299748;genbank:GeneID :3800001 Length = 586 Score = 26.2 bits (56), Expect = 0.67, Method: Compositional matrix adjust. Identities = 12/23 (52%), Positives = 14/23 (60%) Query: 43 IISVGRNGSLTGKSVDIAILDDL 65 + SVG G LTG DI I DD+ Sbjct: 140 VKSVGITGQLTGSRADILIADDV 162 >gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523347;swissprot:trembl:q8w5t4;genbank:gi :17570838;uniprot:Q8W5T4;genbank:GeneID:927460 Length = 586 Score = 26.2 bits (56), Expect = 0.69, Method: Compositional matrix adjust. Identities = 12/21 (57%), Positives = 13/21 (61%) Query: 45 SVGRNGSLTGKSVDIAILDDL 65 SVG G LTG DI I DD+ Sbjct: 142 SVGITGQLTGSRADIIIADDV 162 >gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052122;swissprot:trembl:q9t0z4;genbank:gi :9634048;uniprot:Q9T0Z4;genbank:GeneID:1262409 Length = 587 Score = 26.2 bits (56), Expect = 0.70, Method: Compositional matrix adjust. Identities = 12/21 (57%), Positives = 13/21 (61%) Query: 45 SVGRNGSLTGKSVDIAILDDL 65 SVG G LTG DI I DD+ Sbjct: 143 SVGITGQLTGSRADIIIADDV 163 >gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919024;genbank:gi:119637788;genbank:GeneI D:5179315 Length = 585 Score = 26.2 bits (56), Expect = 0.80, Method: Compositional matrix adjust. Identities = 12/21 (57%), Positives = 13/21 (61%) Query: 45 SVGRNGSLTGKSVDIAILDDL 65 SVG G LTG DI I DD+ Sbjct: 142 SVGITGQLTGSRADIIIADDV 162 >gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813786;genbank:gi:29366741;genbank:GeneID :1258833 Length = 582 Score = 25.8 bits (55), Expect = 0.84, Method: Compositional matrix adjust. Identities = 12/21 (57%), Positives = 13/21 (61%) Query: 45 SVGRNGSLTGKSVDIAILDDL 65 SVG G LTG DI I DD+ Sbjct: 141 SVGITGQLTGSRADILIADDV 161 >gi|9490|lcl|protein:vir:104081 Length: 594 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655592;genbank:gi:109392463;genbank:GeneI D:4156949 Length = 594 Score = 24.6 bits (52), Expect = 2.3, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Query: 170 AKKLNAQRELDRNEFECLNQGNPG------SAEGTLYGNFKTYTDKND 211 +KKL A+ LD N F + G G S+ + GN T+ +N+ Sbjct: 175 SKKLKAEYNLDVNRFIIYSDGGAGRIEAATSSPAAMEGNRPTFVVQNE 222 >gi|11995|lcl|protein:vir:79222 Length: 591 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469154;genbank:gi:157834997;genbank:Ge neID:5648803 Length = 591 Score = 23.9 bits (50), Expect = 3.5, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 4/68 (5%) Query: 50 GSLTGKSVDIAIL-DDLYKDHMEANSPIIREAAWKWYTTVV--TTRLHNNSQQLIVFTRW 106 G+ G S +L DDL D EA SP R W W + + + L V T Sbjct: 204 GTFHGASRPKLLLGDDLITDK-EAKSPTERNNRWDWLEKAIDYLGPPDGSVKYLGVGTVL 262 Query: 107 HKDDLIGR 114 +KDD I R Sbjct: 263 NKDDPISR 270 >gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240074;genbank:gi:66395738;genbank:GeneI D:5133130 Length = 419 Score = 23.5 bits (49), Expect = 4.3, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 21/39 (53%) Query: 41 GYIISVGRNGSLTGKSVDIAILDDLYKDHMEANSPIIRE 79 G + V + G +GKS DIAI+ L N+ I+R+ Sbjct: 24 GKLNIVAKGGRGSGKSSDIAIIIVLLIMRYPVNALILRK 62 >gi|19904|lcl|protein:vir:3781 Length: 607 # NCBI annotation: terminase # Family: family:all:169 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536821;genbank:gi:17981830;genbank:GeneID :929209 Length = 607 Score = 22.7 bits (47), Expect = 7.8, Method: Compositional matrix adjust. Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 37/133 (27%) Query: 248 NEKERRYKHLIFCLVTDIVY------TTAPIEETQVSVPNMLNMNSTDYAYIESNNGGRS 301 N+ ++ K L + DI Y T A + T S N +++S+D ++ +S +G Sbjct: 81 NKSDQEIKELEALIDKDIQYKKQRAATVAKV--TAKSAVNSADVSSSDRSFADSGDGDEH 138 Query: 302 FAVNISPRTKAEINWFCQRLNKEARILSNAANVIQSIVMPYGWESRFPKFHEHITNYLRE 361 K+ R+ ++ ++V + P F + + +Y + Sbjct: 139 --------------------KKKKRVKNDISHVSPEMCQP---------FIDSLFDYQKH 169 Query: 362 FSANKHDDAADVL 374 ANKH D ++L Sbjct: 170 IRANKHHDVRNIL 182 >gi|655|lcl|protein:vir:1588 Length: 447 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695170;swissprot:trembl:o03927;genbank:gi :23455799;goa:O03927;interpro:IPR006437;interpro:IPR0067 01;interpro:IPR011441;uniprot:O03927;genbank:GeneID:9555 65 Length = 447 Score = 22.7 bits (47), Expect = 8.0, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 7/76 (9%) Query: 260 CLVTDIVYTTAPIEETQVSVPNMLNMNSTDYAYIESNNGGRSFAVNISPRTKAEINWFCQ 319 LV D I+ + + P+ M +TD YI +N G SF ++ I+ Sbjct: 3 TLVVDDTNIKKVIKISDLINPHFKRMWTTDKPYIVANGGRGSFKSSV-------ISLKLV 55 Query: 320 RLNKEARILSNAANVI 335 + K+A + ANVI Sbjct: 56 TMVKKAIMQHRKANVI 71 >gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: gp17 terminase subunit # Family: family:all:147 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656379;genbank:gi:109290130;genbank:GeneI D:4156516 Length = 612 Score = 22.7 bits (47), Expect = 8.2, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 283 LNMNSTDYAYIESNNGGRSFAVNISPRTKAEINWFCQRLN 322 LNM Y YIE N G S A ++ + E N C N Sbjct: 450 LNMYYQPYIYIELNATGVSIAKSLYSELEYE-NIICDSYN 488 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.316 0.134 0.405 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 190,219 Number of Sequences: 514 Number of extensions: 9199 Number of successful extensions: 95 Number of sequences better than 100.0: 42 Number of HSP's better than 100.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 43 length of query: 397 length of database: 206,069 effective HSP length: 74 effective length of query: 323 effective length of database: 168,033 effective search space: 54274659 effective search space used: 54274659 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 38 (19.2 bits)