BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:80670|NCBI_annot:gp11|genbank:acc:YP_001 285587;genbank:gi:148727093;genbank:GeneID:5247041 (213 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|12981|lcl|protein:vir:80670 Length: 213 # NCBI annotation: gp... 432 e-123 gi|13490|lcl|protein:vir:9765 Length: 196 # NCBI annotation: put... 70 2e-14 gi|19189|lcl|protein:vir:9580 Length: 183 # NCBI annotation: unk... 57 2e-10 gi|18502|lcl|protein:vir:1644 Length: 185 # NCBI annotation: Str... 50 2e-08 gi|4248|lcl|protein:vir:94739 Length: 185 # NCBI annotation: maj... 50 3e-08 gi|10070|lcl|protein:vir:99006 Length: 303 # NCBI annotation: gp... 44 1e-06 gi|3569|lcl|protein:vir:101656 Length: 324 # NCBI annotation: gp... 39 6e-05 gi|19394|lcl|protein:vir:7861 Length: 324 # NCBI annotation: gp1... 39 6e-05 gi|6399|lcl|protein:vir:98437 Length: 184 # NCBI annotation: ORF... 33 0.002 gi|13279|lcl|protein:vir:81256 Length: 314 # NCBI annotation: gp... 33 0.002 gi|14015|lcl|protein:vir:8194 Length: 197 # NCBI annotation: gp1... 27 0.13 gi|7515|lcl|protein:vir:99926 Length: 204 # NCBI annotation: gp1... 27 0.19 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 26 0.33 gi|11001|lcl|protein:vir:78275 Length: 282 # NCBI annotation: Pu... 26 0.35 gi|19796|lcl|protein:vir:2349 Length: 283 # NCBI annotation: gp1... 26 0.41 gi|11245|lcl|protein:vir:78506 Length: 282 # NCBI annotation: gp... 26 0.43 gi|14686|lcl|protein:vir:2509 Length: 204 # NCBI annotation: maj... 25 0.80 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 25 0.85 gi|14224|lcl|protein:vir:8332 Length: 271 # NCBI annotation: gp4... 23 1.9 gi|8449|lcl|protein:vir:105827 Length: 269 # NCBI annotation: gp... 22 4.3 gi|9704|lcl|protein:vir:102610 Length: 269 # NCBI annotation: gp... 22 4.3 gi|18282|lcl|protein:vir:7995 Length: 269 # NCBI annotation: gp1... 22 4.3 gi|19181|lcl|protein:vir:9572 Length: 459 # NCBI annotation: gp3... 22 8.0 >gi|12981|lcl|protein:vir:80670 Length: 213 # NCBI annotation: gp11 # Family: family:all:698 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285587;genbank:gi:148727093;genbank:Ge neID:5247041 Length = 213 Score = 432 bits (1110), Expect = e-123, Method: Compositional matrix adjust. Identities = 213/213 (100%), Positives = 213/213 (100%) Query: 1 MAGTRKASNVRSAVTGDVYIGKAHAGDTIDGVKTVPDGLTALGYLSDDGFKIKPERKTDD 60 MAGTRKASNVRSAVTGDVYIGKAHAGDTIDGVKTVPDGLTALGYLSDDGFKIKPERKTDD Sbjct: 1 MAGTRKASNVRSAVTGDVYIGKAHAGDTIDGVKTVPDGLTALGYLSDDGFKIKPERKTDD 60 Query: 61 LKAWQNADVVRTVATESSIEISFQLIESKKEVIELFWQSKVTAGADSGSFDISPGATTGV 120 LKAWQNADVVRTVATESSIEISFQLIESKKEVIELFWQSKVTAGADSGSFDISPGATTGV Sbjct: 61 LKAWQNADVVRTVATESSIEISFQLIESKKEVIELFWQSKVTAGADSGSFDISPGATTGV 120 Query: 121 HALLMDIVDGDQVIRYYFPEVELIDRDEIKGKNGEVYGYGVTLKAYPAQINKKGDAVSGR 180 HALLMDIVDGDQVIRYYFPEVELIDRDEIKGKNGEVYGYGVTLKAYPAQINKKGDAVSGR Sbjct: 121 HALLMDIVDGDQVIRYYFPEVELIDRDEIKGKNGEVYGYGVTLKAYPAQINKKGDAVSGR 180 Query: 181 GWMTALKADTPPTPPPAPNPPKPEPDPNPPSNN 213 GWMTALKADTPPTPPPAPNPPKPEPDPNPPSNN Sbjct: 181 GWMTALKADTPPTPPPAPNPPKPEPDPNPPSNN 213 >gi|13490|lcl|protein:vir:9765 Length: 196 # NCBI annotation: putative structural protein # Family: family:all:698 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795527;genbank:gi:28876277;genbank:GeneID :1257818 Length = 196 Score = 70.1 bits (170), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 79/137 (57%), Gaps = 7/137 (5%) Query: 42 LGYLSDDGFKIKPERKTDDLKAWQNADVVRTVATESSIEISFQLIESKK-EVI-ELFWQS 99 LGY+S+DG + R ++++KAW D+V +V TE + +++LIES EV+ E++ + Sbjct: 43 LGYVSEDGVVNEDTRSSENIKAW-GGDIVGSVQTEKEDKFTYKLIESLNVEVLKEVYGAA 101 Query: 100 KVTAGADSGSFDISPGATTGVHALLMD-IVDGDQVIRYYFPEVELIDRDEIKGKNGEVYG 158 VT D G S HA+++D I++G + R P ++ + EIK +GEV G Sbjct: 102 NVTGDLDKGIHIKSNSKELEAHAIVIDMIMNGGILKRIVLPNAKVDEVGEIKYVDGEVVG 161 Query: 159 YGVTLKAYPAQINKKGD 175 Y TLK +P ++KGD Sbjct: 162 YETTLKCFP---DEKGD 175 >gi|19189|lcl|protein:vir:9580 Length: 183 # NCBI annotation: unknown # Family: family:all:698 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862885;genbank:gi:32469421;genbank:GeneID :1461322 Length = 183 Score = 57.4 bits (137), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 14/175 (8%) Query: 1 MAGTRKASNVRSAVTGDVYIGKAHAGDTIDGVKTVPDGLTALGYLSDDGFKIKPERKTDD 60 MA + + + G VY D + ALGY+SDDG ++++ Sbjct: 1 MATEANVTTAKPKIGGAVYSAPLGTALPTDATTKLDQAFEALGYISDDGMTNSNSPESEN 60 Query: 61 LKAWQNADVVRTVATESSIEISFQLIESKKEVIELFWQSKVTAGADSGSFDISPGATTGV 120 +KAW VV +V E + + LIE+ + L +V G D+ S D+S G T Sbjct: 61 IKAWGGV-VVSSVQKEKTDTFKYMLIEA----LNLHVLKEV-YGPDNVSGDLSSGITIKA 114 Query: 121 -------HALLMD-IVDGDQVIRYYFPEVELIDRDEIKGKNGEVYGYGVTLKAYP 167 H L+++ ++ G + R P ++ DEI +G V GYG T+ A+P Sbjct: 115 NSKELPHHCLVIETVLKGGVLKRIVIPSGKVTAIDEITYNDGSVLGYGTTVTAFP 169 >gi|18502|lcl|protein:vir:1644 Length: 185 # NCBI annotation: Structural protein # Family: family:all:698 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695065;genbank:gi:23455756;genbank:GeneID :955486 Length = 185 Score = 50.1 bits (118), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 4/170 (2%) Query: 1 MAGTRKASNVRSAVTGDVYIGKAHAGDTIDGVKTVPDGLTALGYLSDDGFKIKPERKTDD 60 MA + + + G +Y D T+ LGY+S+DG K K K+D Sbjct: 1 MAQVENVTTAKPKIDGAIYSAPKGTALPTDAKPTLNIAFKPLGYISEDGLKNKNSPKSDS 60 Query: 61 LKAWQNADVVRTVATESSIEISFQLIESKK-EVI-ELFWQSKVTAGADSGSFDISPGATT 118 +KAW D V TV TE S+ LIE+ EV+ E++ VT +G + Sbjct: 61 IKAW-GGDTVATVQTEKEDTFSYTLIEALNVEVLKEVYGADNVTGTLKTGITVKANSKEL 119 Query: 119 GVHALLMDIVDGDQVI-RYYFPEVELIDRDEIKGKNGEVYGYGVTLKAYP 167 H +++D+ + V R P+ ++ + +I + + G+ +TL P Sbjct: 120 IEHPVVIDMTVRNGVFKRIVIPQGKVSEIGDISYNDSDAVGFEITLTGLP 169 >gi|4248|lcl|protein:vir:94739 Length: 185 # NCBI annotation: major tail protein # Family: family:all:698 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996712;genbank:gi:45597427;genbank:GeneID :2767963 Length = 185 Score = 49.7 bits (117), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 4/170 (2%) Query: 1 MAGTRKASNVRSAVTGDVYIGKAHAGDTIDGVKTVPDGLTALGYLSDDGFKIKPERKTDD 60 MA + + + G +Y D T+ LGY+S+DG K K K+D Sbjct: 1 MAQVENVTTAKPKIDGAIYSAPKGTALPTDARTTLNVAFKPLGYISEDGLKNKNSPKSDS 60 Query: 61 LKAWQNADVVRTVATESSIEISFQLIESKK-EVI-ELFWQSKVTAGADSGSFDISPGATT 118 +KAW D V TV TE S+ LIE+ EV+ E++ VT +G + Sbjct: 61 IKAW-GGDTVATVQTEKEDTFSYTLIEALNVEVLKEVYGADNVTGTLKTGITVKANSKEL 119 Query: 119 GVHALLMDIVDGDQVI-RYYFPEVELIDRDEIKGKNGEVYGYGVTLKAYP 167 H +++D+ + V R P+ ++ + +I + + G+ +TL P Sbjct: 120 IEHPVVIDMTVRNGVFKRIVIPQGKVSEIGDISYNDSDAVGFEITLTGLP 169 >gi|10070|lcl|protein:vir:99006 Length: 303 # NCBI annotation: gp35 # Family: family:all:698 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655900;genbank:gi:109521472;genbank:GeneI D:4157971 Length = 303 Score = 44.3 bits (103), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 47 DDGFKIKPERKTDDLKAWQNADVVRTVATESSIEISFQLIESKKEVIELFW-----QSKV 101 D G I + ++ D++ + + VRT+ T+ + + IE+ +EVIE +W + + Sbjct: 59 DAGLSITSDIESSDIEGYGEVEPVRTIITKRTTRFNASFIETNREVIEKYWGIELDATNL 118 Query: 102 TAGADSGSFDISPGATTGV--HALLM--DIVDGDQVIRYY-FPEVELIDRDEIKGKNGEV 156 T A G +P + +L+ D V+G+ + Y+ P+V+L + D + ++ Sbjct: 119 TVSAQGGVTVKAPPRPKNIFYRCILLGQDEVNGEDLFPYWILPKVKLTEVDNMDFRDDAE 178 Query: 157 YGYGVTLKAY 166 Y +T +A+ Sbjct: 179 IQYRMTFQAF 188 >gi|3569|lcl|protein:vir:101656 Length: 324 # NCBI annotation: gp19 # Family: family:all:1912 # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654774;genbank:gi:109302772;genbank:GeneI D:4156090 Length = 324 Score = 38.5 bits (88), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%) Query: 42 LGYLSDDGFKIKPERKTDDLKAWQNADVVRTVATESSIEISFQLIESKKEVIELFWQ--- 98 +G +++DG + P+ TDD K WQ+ RT TE E+ F E+ + L + Sbjct: 67 IGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYLRYNLPL 126 Query: 99 SKVTAGADSGSFDISPGATTGVHALLMDI-VDGD----QVIRYYFPEVELIDRDEIKGKN 153 V + +G P T V+ ++ I VDG + + P V L + K Sbjct: 127 ENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVGKQSFKA 186 Query: 154 GEVYGYGVTLKAYP 167 E+ G +T YP Sbjct: 187 KEIDGTELTFGVYP 200 >gi|19394|lcl|protein:vir:7861 Length: 324 # NCBI annotation: gp18 # Family: family:all:1912 # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817468;genbank:gi:29565897;genbank:GeneID :1259090 Length = 324 Score = 38.5 bits (88), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%) Query: 42 LGYLSDDGFKIKPERKTDDLKAWQNADVVRTVATESSIEISFQLIESKKEVIELFWQ--- 98 +G +++DG + P+ TDD K WQ+ RT TE E+ F E+ + L + Sbjct: 67 IGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYLRYNLPL 126 Query: 99 SKVTAGADSGSFDISPGATTGVHALLMDI-VDGD----QVIRYYFPEVELIDRDEIKGKN 153 V + +G P T V+ ++ I VDG + + P V L + K Sbjct: 127 ENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVGKQSFKA 186 Query: 154 GEVYGYGVTLKAYP 167 E+ G +T YP Sbjct: 187 KEIDGTELTFGVYP 200 >gi|6399|lcl|protein:vir:98437 Length: 184 # NCBI annotation: ORFp27 # Family: family:all:698 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958286;genbank:gi:41057260;uniprot:Q38601 ;genbank:GeneID:2732821 Length = 184 Score = 33.5 bits (75), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 5/129 (3%) Query: 42 LGYLSDDGFKIKPERKTDDLKAWQNADVVRTVATESSIEISFQLIESKKEVIELF--WQS 99 +G LS+DG ++ + D AW +VRT ++ +I +E V L S Sbjct: 40 VGLLSEDGASESRDQDSTDFYAWGGV-LVRTAKSKHKRQIVVTCLEENLVVFGLVNPGSS 98 Query: 100 KVTAGADSGSFDISPGATTGVHALLMDIVDGDQVIRYYFPEVELIDRDEIKGKNGEVYGY 159 VTA + P A A ++++ DG R P+ E+ E+ + + Y Sbjct: 99 AVTATGVTTRTVKVPKADP--RAFVLELRDGAVKKRRVIPKGEVESVGEVTLSDSALTAY 156 Query: 160 GVTLKAYPA 168 +T+ YPA Sbjct: 157 ELTITIYPA 165 >gi|13279|lcl|protein:vir:81256 Length: 314 # NCBI annotation: gp12, major tail protein # Family: family:all:698 # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456742;genbank:gi:157168385;uniprot:Q9 MBJ3;genbank:GeneID:5580379 Length = 314 Score = 33.5 bits (75), Expect = 0.002, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 24/41 (58%) Query: 125 MDIVDGDQVIRYYFPEVELIDRDEIKGKNGEVYGYGVTLKA 165 +DI++G + RY P +I+R I E+ GY +T++A Sbjct: 139 IDILEGTKHRRYLLPAASVIERGAITHTKTEMTGYDLTIRA 179 >gi|14015|lcl|protein:vir:8194 Length: 197 # NCBI annotation: gp14 # Family: family:all:698 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817987;genbank:gi:29566421;genbank:GeneID :2700975 Length = 197 Score = 27.3 bits (59), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 5/141 (3%) Query: 30 DGVKTVPDGLTALGYLSDDGFKIKPERKTDDLKAWQNADVVRTVATESSIEISFQLIESK 89 D + + L G++ DDGF +R K + ++T ++ ES Sbjct: 31 DAIAELDAALEPHGWMGDDGFVNNIQRDVTKHKDFAGT-TIKTTQDNYEETVAVTCCESN 89 Query: 90 KEVIE-LFWQSKVTAGADSGSFDIS---PGATTGVHALLMDIVDGDQVIRYYFPEVELID 145 V++ +F S V G I+ A + ++ +VDG + PE ++ + Sbjct: 90 PVVLKTVFGDSNVDVDFTDGHRKITIRHDEAPLPRKSFVVRVVDGVKTRMLVIPEGQVTE 149 Query: 146 RDEIKGKNGEVYGYGVTLKAY 166 E+ + E+ Y +T+ Y Sbjct: 150 IGEVTWLSSELVQYTLTIDCY 170 >gi|7515|lcl|protein:vir:99926 Length: 204 # NCBI annotation: gp13 # Family: family:all:698 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655530;genbank:gi:109392300;genbank:GeneI D:4157095 Length = 204 Score = 26.9 bits (58), Expect = 0.19, Method: Compositional matrix adjust. Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 8/133 (6%) Query: 41 ALGYLSDDGFKIKPERKTDDLKAWQNADVVRTVATESSIEISFQLIESKKEVIE--LFWQ 98 +LGY+S DG I + T ++ W + + + ++ +IE S L + + +F Sbjct: 53 SLGYVSSDGVTISIDGSTTPIEVW-SGERIGSLRDAFAIEYSMSLYQVLSPHVNAVIFGD 111 Query: 99 SKVTAGADSGSFDISPGATTG-----VHALLMDIVDGDQVIRYYFPEVELIDRDEIKGKN 153 VT A + + +L++D D+ IR V++ D D+I + Sbjct: 112 GSVTTAAATAEHGNRMKVAISSRMPKMASLVLDAFFEDKAIRQVAELVQMSDIDDITLVH 171 Query: 154 GEVYGYGVTLKAY 166 E + T + Sbjct: 172 NEPMAFTPTFSVF 184 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 26.2 bits (56), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%) Query: 2 AGTRKASNVRSAVTG-DVYIGKAHAGDTIDGVKTVPDGLTALGYLSDDGFKIKPERKTDD 60 +G K N R G D Y+ + D K V G + KI E + DD Sbjct: 207 SGLGKVKNAREFYIGTDGYVREGFIDSMKDKAKKVLSGAARWNSMFPFICKIDEEHEVDD 266 Query: 61 LKAWQNAD-VVRTVATESSIEISFQLIESKKEVIE 94 + WQ A+ + ++ + E+ + E +E+IE Sbjct: 267 KEKWQKANPMFHQPMSDYAQELFDMVCEQYEEMIE 301 >gi|11001|lcl|protein:vir:78275 Length: 282 # NCBI annotation: Putative major tail protein # Family: family:all:2431 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491672;genbank:gi:157786496;genbank:Ge neID:5625753 Length = 282 Score = 26.2 bits (56), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Query: 63 AWQNADVVRTVATESSIEISFQLIESKKEVIELFWQSKVTAGADSGSFDISPGATTGVHA 122 +WQ + E + + L + + +EL++ +A G F + G+ A Sbjct: 73 SWQKKKLREVETEEIADYVVINLTQFDESALELYFGPNQSA--TPGIFGVKSGSVVNERA 130 Query: 123 LLMDIVDGDQVIRYYFPEVELIDRDEI 149 LL+ IVD D + ++ + L D I Sbjct: 131 LLIVIVDNDVRLGFHARKASLKREDAI 157 >gi|19796|lcl|protein:vir:2349 Length: 283 # NCBI annotation: gp19 # Family: family:all:2431 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075286;genbank:gi:12657873;genbank:GeneID :920104 Length = 283 Score = 25.8 bits (55), Expect = 0.41, Method: Compositional matrix adjust. Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 63 AWQNADVVRTVATESSIEISFQLIESKKEVIELFWQSKVTAGADSGSFDISPGATTGVHA 122 +WQ + E + + L + + +EL++ +A G F + G+ A Sbjct: 73 SWQKKKLREVETEEIADYVVINLTQFDETALELYFGPNQSA--TPGIFGVKSGSVVNERA 130 Query: 123 LLMDIVDGDQVIRYYFPEVELIDRDEIK 150 LL+ IVD D + ++ + L D I Sbjct: 131 LLIVIVDNDVRLGFHARKASLKREDAIS 158 >gi|11245|lcl|protein:vir:78506 Length: 282 # NCBI annotation: gp20 # Family: family:all:2431 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491591;genbank:gi:157786414;genbank:Ge neID:5625658 Length = 282 Score = 25.8 bits (55), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 63 AWQNADVVRTVATESSIEISFQLIESKKEVIELFWQSKVTAGADSGSFDISPGATTGVHA 122 +WQ + E + + L + + +EL++ +A G F + G+ A Sbjct: 73 SWQKKKLREVETEEIADYVVINLTQFDETALELYFGPNQSA--TPGIFGVKSGSVVNERA 130 Query: 123 LLMDIVDGDQVIRYYFPEVELIDRDEIK 150 LL+ IVD D + ++ + L D I Sbjct: 131 LLIVIVDNDVRLGFHARKASLKREDAIS 158 >gi|14686|lcl|protein:vir:2509 Length: 204 # NCBI annotation: major tail subunit gp14 # Family: family:all:698 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569750;genbank:gi:18496900;genbank:GeneI D:932335 Length = 204 Score = 25.0 bits (53), Expect = 0.80, Method: Compositional matrix adjust. Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 37 DGLTALGYLSDDGFKIKPERKTDDLKAWQNADVVRTVATESSIEISFQLIE 87 D LG++S +G +K + +T ++ W D + + + +IE S +L + Sbjct: 50 DKFKNLGFISVEGVTVKIDDQTKPIEVW-GGDEIGALRDKFAIEYSMKLFQ 99 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 24.6 bits (52), Expect = 0.85, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 2/95 (2%) Query: 2 AGTRKASNVRSAVTG-DVYIGKAHAGDTIDGVKTVPDGLTALGYLSDDGFKIKPERKTDD 60 +G K N R G D Y+ + D K V G + KI E + DD Sbjct: 207 SGLGKVKNAREFYIGTDGYVREGFIDSMKDKAKKVLSGNARWNSMFPFICKIDEEHEVDD 266 Query: 61 LKAWQNAD-VVRTVATESSIEISFQLIESKKEVIE 94 + WQ A+ + ++ + E+ + E +E++E Sbjct: 267 KEKWQKANPMFHEPMSDYAQELFDMVCEQYEEMVE 301 >gi|14224|lcl|protein:vir:8332 Length: 271 # NCBI annotation: gp49 # Family: family:all:1912 # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817900;genbank:gi:29566333;genbank:GeneID :1259528 Length = 271 Score = 23.5 bits (49), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 37 DGLTALGYLSDDGFKIK-PERKTDDLKAWQNADVVRTVATESSIEISFQLIESKKEVIEL 95 +G +G L++DG + P+ D+ Q+ + T S+ I+F +E+ K +++ Sbjct: 87 EGFHLIGALTEDGGPERAPDISNDNQMILQSNMPFDSDLTSESLSINFTGVETVKPLMKR 146 Query: 96 FWQSKVTAGADSGSFDISPG 115 + + +D S PG Sbjct: 147 LRMNLALSDSDGNSIVEDPG 166 >gi|8449|lcl|protein:vir:105827 Length: 269 # NCBI annotation: gp11 # Family: family:all:1912 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655772;genbank:gi:109522095;genbank:GeneI D:4157635 Length = 269 Score = 22.3 bits (46), Expect = 4.3, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 47 DDGFKIKPERKTDDLKAWQNADVVRTVATESSIEISFQLIESKKEVIE 94 D G + +P+ +DDL Q+ V + TE S + F + + +I Sbjct: 97 DGGAEREPDVTSDDLMVLQSKFPVDSEVTEKSYSVRFVALGTADPLIH 144 >gi|9704|lcl|protein:vir:102610 Length: 269 # NCBI annotation: gp11 # Family: family:all:1912 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_655007;genbank:gi:109392197;genbank:GeneI D:4157232 Length = 269 Score = 22.3 bits (46), Expect = 4.3, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 47 DDGFKIKPERKTDDLKAWQNADVVRTVATESSIEISFQLIESKKEVIE 94 D G + +P+ +DDL Q+ V + TE S + F + + +I Sbjct: 97 DGGAEREPDVTSDDLMVLQSKFPVDSEVTEKSYSVRFVALGTADPLIH 144 >gi|18282|lcl|protein:vir:7995 Length: 269 # NCBI annotation: gp11 # Family: family:all:1912 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817349;genbank:gi:29565777;genbank:GeneID :1259036 Length = 269 Score = 22.3 bits (46), Expect = 4.3, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 47 DDGFKIKPERKTDDLKAWQNADVVRTVATESSIEISFQLIESKKEVIE 94 D G + +P+ +DDL Q+ V + TE S + F + + +I Sbjct: 97 DGGAEREPDVTSDDLMVLQSKFPVDSEVTEKSYSVRFVALGTADPLIH 144 >gi|19181|lcl|protein:vir:9572 Length: 459 # NCBI annotation: gp38 # Family: family:all:523 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862877;genbank:gi:32469469;genbank:GeneID :1461314 Length = 459 Score = 21.6 bits (44), Expect = 8.0, Method: Compositional matrix adjust. Identities = 6/19 (31%), Positives = 14/19 (73%) Query: 50 FKIKPERKTDDLKAWQNAD 68 + + E++ DD++AW N++ Sbjct: 227 WSVSDEKEIDDVEAWYNSN 245 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.311 0.133 0.393 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 112,199 Number of Sequences: 514 Number of extensions: 5429 Number of successful extensions: 36 Number of sequences better than 100.0: 23 Number of HSP's better than 100.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 23 length of query: 213 length of database: 206,069 effective HSP length: 68 effective length of query: 145 effective length of database: 171,117 effective search space: 24811965 effective search space used: 24811965 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 35 (18.1 bits)