BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:79133|NCBI_annot:putative tail tube protein gpFII|genbank:acc:YP_001165277;genbank:gi:145708102;genbank:Ge neID:5247144 (169 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|11899|lcl|protein:vir:79133 Length: 169 # NCBI annotation: pu... 349 1e-98 gi|9915|lcl|protein:vir:103992 Length: 169 # NCBI annotation: ph... 185 3e-49 gi|11951|lcl|protein:vir:79203 Length: 169 # NCBI annotation: gp... 185 3e-49 gi|10962|lcl|protein:vir:78189 Length: 169 # NCBI annotation: gp... 185 3e-49 gi|15695|lcl|protein:vir:1173 Length: 171 # NCBI annotation: hyp... 171 5e-45 gi|13755|lcl|protein:vir:1846 Length: 173 # NCBI annotation: tai... 166 2e-43 gi|4414|lcl|protein:vir:98546 Length: 172 # NCBI annotation: gp2... 165 3e-43 gi|2195|lcl|protein:vir:100324 Length: 168 # NCBI annotation: ta... 162 3e-42 gi|17000|lcl|protein:vir:6080 Length: 172 # NCBI annotation: gpF... 152 3e-39 gi|17354|lcl|protein:vir:2036 Length: 172 # NCBI annotation: gpF... 152 3e-39 gi|18705|lcl|protein:vir:5712 Length: 172 # NCBI annotation: FII... 150 1e-38 gi|19556|lcl|protein:vir:10337 Length: 167 # NCBI annotation: OR... 103 1e-24 gi|11830|lcl|protein:vir:79072 Length: 174 # NCBI annotation: gp... 49 5e-08 gi|5618|lcl|protein:vir:107863 Length: 174 # NCBI annotation: gp... 48 6e-08 gi|8330|lcl|protein:vir:96741 Length: 168 # NCBI annotation: put... 47 2e-07 gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2... 27 0.12 gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp... 27 0.12 gi|1299|lcl|protein:vir:105078 Length: 155 # NCBI annotation: ma... 25 0.44 gi|8237|lcl|protein:vir:101512 Length: 280 # NCBI annotation: gp... 23 1.9 gi|9086|lcl|protein:vir:102193 Length: 280 # NCBI annotation: gp... 23 1.9 >gi|11899|lcl|protein:vir:79133 Length: 169 # NCBI annotation: putative tail tube protein gpFII # Family: family:all:129 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165277;genbank:gi:145708102;genbank:Ge neID:5247144 Length = 169 Score = 349 bits (895), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 169/169 (100%), Positives = 169/169 (100%) Query: 1 MALPRILKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMGNEKLELET 60 MALPRILKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMGNEKLELET Sbjct: 1 MALPRILKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMGNEKLELET 60 Query: 61 TYGGPMREILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAKAGA 120 TYGGPMREILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAKAGA Sbjct: 61 TYGGPMREILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAKAGA 120 Query: 121 KAPFKVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL 169 KAPFKVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL Sbjct: 121 KAPFKVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL 169 >gi|9915|lcl|protein:vir:103992 Length: 169 # NCBI annotation: phage major tail tube protein # Family: family:all:129 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293728;genbank:gi:72537698;genbank:GeneID :3608122 Length = 169 Score = 185 bits (469), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 90/169 (53%), Positives = 119/169 (70%) Query: 1 MALPRILKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMGNEKLELET 60 M +PR LK FNVF +G GE EE+NLPKL RK+E ++ GM G ++ID G+E+L+LE Sbjct: 1 MGMPRKLKGFNVFHNGANFVGEVEELNLPKLKRKMEAWQGSGMTGPVKIDYGSEELQLEW 60 Query: 61 TYGGPMREILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAKAGA 120 T GG M E+L+QYG DG ++RFAG Y+ ED+K+ D +E+VV+GRH EID GTAKA Sbjct: 61 TCGGFMVEVLEQYGAVQHDGVLLRFAGGYRREDSKKHDQIEVVVKGRHEEIDMGTAKAKE 120 Query: 121 KAPFKVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL 169 FK+ ++ +YYK+TVNG ELDFVN VE + G D + RRA+GL Sbjct: 121 DTKFKITTNASYYKLTVNGRDLIELDFVNAVEKINGMDLASDLRRAMGL 169 >gi|11951|lcl|protein:vir:79203 Length: 169 # NCBI annotation: gp29, phage major tail tube protein # Family: family:all:129 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111060;genbank:gi:134288759;genbank:Ge neID:4960722 Length = 169 Score = 185 bits (469), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 90/169 (53%), Positives = 119/169 (70%) Query: 1 MALPRILKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMGNEKLELET 60 M +PR LK FNVF +G GE EE+NLPKL RK+E ++ GM G ++ID G+E+L+LE Sbjct: 1 MGMPRKLKGFNVFHNGANFVGEVEELNLPKLKRKMEAWQGSGMTGPVKIDYGSEELQLEW 60 Query: 61 TYGGPMREILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAKAGA 120 T GG M E+L+QYG DG ++RFAG Y+ ED+K+ D +E+VV+GRH EID GTAKA Sbjct: 61 TCGGFMVEVLEQYGAVQHDGVLLRFAGGYRREDSKKHDQIEVVVKGRHEEIDMGTAKAKE 120 Query: 121 KAPFKVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL 169 FK+ ++ +YYK+TVNG ELDFVN VE + G D + RRA+GL Sbjct: 121 DTKFKITTNASYYKLTVNGRDLIELDFVNAVEKINGMDLASDLRRAMGL 169 >gi|10962|lcl|protein:vir:78189 Length: 169 # NCBI annotation: gp32, phage major tail tube protein # Family: family:all:129 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111182;genbank:gi:134288724;genbank:Ge neID:4960649 Length = 169 Score = 185 bits (469), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 90/169 (53%), Positives = 119/169 (70%) Query: 1 MALPRILKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMGNEKLELET 60 M +PR LK FNVF +G GE EE+NLPKL RK+E ++ GM G ++ID G+E+L+LE Sbjct: 1 MGMPRKLKGFNVFHNGANFVGEVEELNLPKLKRKMEAWQGSGMTGPVKIDYGSEELQLEW 60 Query: 61 TYGGPMREILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAKAGA 120 T GG M E+L+QYG DG ++RFAG Y+ ED+K+ D +E+VV+GRH EID GTAKA Sbjct: 61 TCGGFMVEVLEQYGAVQHDGVLLRFAGGYRREDSKKHDQIEVVVKGRHEEIDMGTAKAKE 120 Query: 121 KAPFKVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL 169 FK+ ++ +YYK+TVNG ELDFVN VE + G D + RRA+GL Sbjct: 121 DTKFKITTNASYYKLTVNGRDLIELDFVNAVEKINGMDLASDLRRAMGL 169 >gi|15695|lcl|protein:vir:1173 Length: 171 # NCBI annotation: hypothetical protein # Family: family:all:129 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490622;genbank:gi:17313242;genbank:GeneID :927298 Length = 171 Score = 171 bits (433), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 84/171 (49%), Positives = 116/171 (67%), Gaps = 2/171 (1%) Query: 1 MALPRILKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMG--NEKLEL 58 MA+PR LK+ N+F DG + G + LP LARK+E +R GGMNG ++ D+G ++ ++ Sbjct: 1 MAMPRKLKNMNLFNDGGSYQGVVKSCTLPPLARKMEAFRGGGMNGPVKADLGFDDDGIQF 60 Query: 59 ETTYGGPMREILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAKA 118 E T GG LKQYG + +G M+RFAG++Q +DT EV +VEIVVRGRH I+ G A+ Sbjct: 61 EWTLGGLDLTALKQYGAVSANGVMLRFAGSFQQDDTGEVTSVEIVVRGRHETIEMGDAQP 120 Query: 119 GAKAPFKVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL 169 G K+ ++ +YYK+ VNGE E+D +NFVE V G+D L AQR+AIGL Sbjct: 121 GEDTEHKITTTCSYYKLVVNGEEVIEIDLLNFVEKVNGKDLLEAQRKAIGL 171 >gi|13755|lcl|protein:vir:1846 Length: 173 # NCBI annotation: tail tube protein FII # Family: family:all:129 # MgeID: mge:324 # MgeName: 186 # Cross-refs: genbank:acc:NP_052270;genbank:gi:9634077;genbank:GeneID: 1262451 Length = 173 Score = 166 bits (419), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 86/172 (50%), Positives = 110/172 (63%), Gaps = 3/172 (1%) Query: 1 MALPRILKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMG--NEKLEL 58 MALPR LK+ N+F DG+ + G E + LPKL RKLE YR GGMNGA ID+G ++ L + Sbjct: 1 MALPRKLKYLNMFNDGLSYMGVVESVTLPKLTRKLENYRGGGMNGAAAIDLGLDDDALTV 60 Query: 59 ETTYGG-PMREILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAK 117 E + GG P + QY D +RFAG+YQ +DT E+ AVE+V+RGRH EID G K Sbjct: 61 EWSVGGLPDVALWAQYAAPGADAVPLRFAGSYQRDDTGEIVAVEVVMRGRHKEIDGGENK 120 Query: 118 AGAKAPFKVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL 169 G K+ + TYY++T++G E+D VN VE V G DRL RRAIGL Sbjct: 121 QGENTSTKLSTVCTYYRLTIDGSDIIEIDTVNMVEKVNGVDRLEQHRRAIGL 172 >gi|4414|lcl|protein:vir:98546 Length: 172 # NCBI annotation: gp22 # Family: family:all:129 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958077;genbank:gi:41057374;genbank:GeneID :2744217 Length = 172 Score = 165 bits (418), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 86/172 (50%), Positives = 110/172 (63%), Gaps = 3/172 (1%) Query: 1 MALPRILKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMG--NEKLEL 58 MALPR LK+ N+F DG+ + G E + LPKL RKLE YR GGMNGA ID+G ++ L + Sbjct: 1 MALPRKLKYLNMFNDGLSYMGVVESVTLPKLTRKLENYRGGGMNGAAAIDLGLDDDALTV 60 Query: 59 ETTYGG-PMREILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAK 117 E + GG P + QY D +RFAG+YQ +DT E+ AVE+V+RGRH EID G K Sbjct: 61 EWSVGGLPDVALWAQYAAPGADAVPLRFAGSYQRDDTGEIVAVEVVMRGRHKEIDGGENK 120 Query: 118 AGAKAPFKVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL 169 G K+ + TYY++T++G E+D VN VE V G DRL RRAIGL Sbjct: 121 QGENTSTKLSTVCTYYRLTIDGSDVIEIDTVNMVEKVNGVDRLEQHRRAIGL 172 >gi|2195|lcl|protein:vir:100324 Length: 168 # NCBI annotation: tail tube protein FII # Family: family:all:129 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655493;genbank:gi:109289961;genbank:GeneI D:4157367 Length = 168 Score = 162 bits (409), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 86/169 (50%), Positives = 111/169 (65%), Gaps = 1/169 (0%) Query: 1 MALPRILKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMGNEKLELET 60 M LP LK+FN DG + GE E+ PKLA +LE+YRAGGM + ++MG EKLELE Sbjct: 1 MGLPAKLKNFNFSVDGTSYLGETTEVTQPKLAMQLEDYRAGGMIAPVGVNMGLEKLELEF 60 Query: 61 TYGGPMREILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAKAGA 120 GG ++LK +G + + G RF GAYQH+D VDAVE+V RGR EID G++KAG Sbjct: 61 KIGGHEEDLLKLFGGS-ISGNAFRFNGAYQHDDDDSVDAVELVCRGRIAEIDEGSSKAGD 119 Query: 121 KAPFKVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL 169 K+SLTYYK TVNG E+D +N + +V G+DRLA R+A+GL Sbjct: 120 DTEHSYKASLTYYKKTVNGVDIIEIDTLNQIYIVDGKDRLAEIRKAMGL 168 >gi|17000|lcl|protein:vir:6080 Length: 172 # NCBI annotation: gpFII # Family: family:all:129 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878221;genbank:gi:33438920;genbank:GeneID :1457755 Length = 172 Score = 152 bits (383), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 79/172 (45%), Positives = 106/172 (61%), Gaps = 3/172 (1%) Query: 1 MALPRILKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMG--NEKLEL 58 MA+PR LK NVF +G + G + + LPKL RKLE YR GMNG+ +D+G ++ L + Sbjct: 1 MAMPRKLKLMNVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMNGSAPVDLGLDDDALSM 60 Query: 59 ETTYGG-PMREILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAK 117 E + GG P I + Y T VD IRFAG+YQ +DT E AVE+V+RGR EID G K Sbjct: 61 EWSLGGFPDSVIWELYAATGVDAVPIRFAGSYQRDDTGETVAVEVVMRGRQKEIDTGEGK 120 Query: 118 AGAKAPFKVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL 169 G K+ TY+++T++G+ E+D +N +E V G DRL RR IGL Sbjct: 121 QGEDTESKISVVCTYFRLTMDGKELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 >gi|17354|lcl|protein:vir:2036 Length: 172 # NCBI annotation: gpFII # Family: family:all:129 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046779;genbank:gi:9630350;genbank:GeneID: 1261535 Length = 172 Score = 152 bits (383), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 79/172 (45%), Positives = 106/172 (61%), Gaps = 3/172 (1%) Query: 1 MALPRILKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMG--NEKLEL 58 MA+PR LK NVF +G + G + + LPKL RKLE YR GMNG+ +D+G ++ L + Sbjct: 1 MAMPRKLKLMNVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMNGSAPVDLGLDDDALSM 60 Query: 59 ETTYGG-PMREILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAK 117 E + GG P I + Y T VD IRFAG+YQ +DT E AVE+V+RGR EID G K Sbjct: 61 EWSLGGFPDSVIWELYAATGVDAVPIRFAGSYQRDDTGETVAVEVVMRGRQKEIDTGEGK 120 Query: 118 AGAKAPFKVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL 169 G K+ TY+++T++G+ E+D +N +E V G DRL RR IGL Sbjct: 121 QGEDTESKISVVCTYFRLTMDGKELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 >gi|18705|lcl|protein:vir:5712 Length: 172 # NCBI annotation: FII # Family: family:all:129 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839871;genbank:gi:30065726;genbank:GeneID :1260619 Length = 172 Score = 150 bits (378), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 78/172 (45%), Positives = 106/172 (61%), Gaps = 3/172 (1%) Query: 1 MALPRILKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMG--NEKLEL 58 MA+PR LK NVF +G + G + + LPKL RKLE YR GMNG+ +D+G ++ L + Sbjct: 1 MAMPRKLKLMNVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMNGSAPVDLGLDDDALSM 60 Query: 59 ETTYGG-PMREILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAK 117 E + GG P I + Y T+ D IRFAG+YQ +DT E AVE+V+RGR E+D G K Sbjct: 61 EWSLGGFPDSVIWELYAATSADAVPIRFAGSYQRDDTGETVAVEVVMRGRQKEVDTGEGK 120 Query: 118 AGAKAPFKVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL 169 G K+ TY+K+T++G+ E+D +N +E V G DRL RR IGL Sbjct: 121 QGEDTESKLPVICTYFKLTMDGKELVEIDTINMIEKVNGVDRLEQHRRNIGL 172 >gi|19556|lcl|protein:vir:10337 Length: 167 # NCBI annotation: ORF40 # Family: family:all:129 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758932;genbank:gi:27311208;genbank:GeneID :956127 Length = 167 Score = 103 bits (257), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 65/168 (38%), Positives = 88/168 (52%), Gaps = 3/168 (1%) Query: 3 LPRILKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMGNEKLELETTY 62 LP++++ N+FADG + G EE+ PKL K EE++AGGM+ +++D G EKLE T Sbjct: 2 LPQVIRAMNLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMDAPLELDQGMEKLECNFTV 61 Query: 63 GGPMREILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAKAGAKA 122 +E+ YG V G MI E E V +V+ G E+DFGT K+G KA Sbjct: 62 ASYEKELFAAYGL--VPGKMINVTLRGAFEQDGETREVVMVLNGSWKELDFGTWKSGEKA 119 Query: 123 PFKVKSSLTYYKM-TVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL 169 KV L + GE +D N V + G D L A R+AIGL Sbjct: 120 QLKVAVGLQEVETKNPTGEEKVFIDIPNMVRRINGTDLLEAARKAIGL 167 >gi|11830|lcl|protein:vir:79072 Length: 174 # NCBI annotation: gp14, phage major tail tube protein # Family: family:all:129 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111214;genbank:gi:134288801;genbank:Ge neID:4960746 Length = 174 Score = 48.5 bits (114), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 2/164 (1%) Query: 7 LKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMGNEKLELETTYGGPM 66 + + NV+ G+ EEI LP + + E++A GM G +++ G +KLE E + Sbjct: 10 ITNANVYLSNNSMLGKAEEIKLPDIQAIMAEHKALGMIGKVELPGGLDKLEGEIKWNSLY 69 Query: 67 REILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIV--VRGRHTEIDFGTAKAGAKAPF 124 ++ K + + + V V +V + + GT K A F Sbjct: 70 ADVAKAMANPFKAVPLQCRSNIETYGAQGRVREVSLVTYLTVMFKKNPLGTYKQHENADF 129 Query: 125 KVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIG 168 TY K ++GE ELD++ + V GED LA R IG Sbjct: 130 SSSFGATYIKQVIDGEEVLELDYLANIFRVGGEDMLADFRANIG 173 >gi|5618|lcl|protein:vir:107863 Length: 174 # NCBI annotation: gp40 # Family: family:all:129 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024713;genbank:gi:48696950;genbank:GeneID :2845951 Length = 174 Score = 48.1 bits (113), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 2/164 (1%) Query: 7 LKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMGNEKLELETTYGGPM 66 + + NV+ G+ EEI LP + + E++A GM G +++ G +KLE E + Sbjct: 10 ITNANVYLSNNSMLGKAEEIKLPDIQAIMAEHKALGMIGKVELPGGLDKLEGEIKWNSLY 69 Query: 67 REILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIV--VRGRHTEIDFGTAKAGAKAPF 124 ++ K + + + V V +V + + GT K A F Sbjct: 70 ADVAKAMANPFKAVPLQCRSNIETYGAQGRVREVSLVTYLTVMFKKNPLGTYKQHENADF 129 Query: 125 KVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIG 168 TY K ++GE ELD++ + V GED LA R IG Sbjct: 130 SSAFGATYIKQVIDGEEVLELDYLANIFRVGGEDMLADFRANIG 173 >gi|8330|lcl|protein:vir:96741 Length: 168 # NCBI annotation: putative tail tube protein # Family: family:all:129 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039840;genbank:gi:126010870;genbank:Ge neID:5076251 Length = 168 Score = 46.6 bits (109), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 2/169 (1%) Query: 1 MALPRILKHFNVFADGVVHTGECEEINLPKLARKLEEYRAGGMNGAIQIDMGNEKLELET 60 MA R K +G E +E P++ + +EE R GG A +I +G EKL E Sbjct: 1 MAGQRSRKLLAATVNGHPLLAEIDEFTPPEVKKVMEEAR-GGKFIADEIMVGLEKLTYEL 59 Query: 61 TYGGPMREILKQYGTTAVDGAMIRFAGAYQHEDTKEVDAVEIVVRGRHTEIDFGTAKAGA 120 GP ++L YG + + + Q ++ + A+ + G + K G+ Sbjct: 60 KVLGPTADLLSAYGLKQGEICQVDVKASEQDKEGNKY-ALHYSLSGEVVGVKEEGVKMGS 118 Query: 121 KAPFKVKSSLTYYKMTVNGEVWCELDFVNFVEVVFGEDRLAAQRRAIGL 169 K + SLT YK T NG +++ V + D +A RR +GL Sbjct: 119 KPGVTISGSLTAYKKTENGTTVYDINTATQVINLGQGDIMAEHRRNVGL 167 >gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655098;genbank:gi:109391848;genbank:GeneI D:4157257 Length = 595 Score = 27.3 bits (59), Expect = 0.12, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Query: 25 EINLP------KLARKLEEYRAGGMNGAIQIDMGNEKLELETTYGGPMREILKQYGTTAV 78 EI++P LA RA N +I + L+L T+ MRE ++ YGT V Sbjct: 111 EISMPPQEGKSTLAAVATPLRALQHNPHRKIILATYALDLAETHSRTMREWIETYGTDVV 170 Query: 79 D 79 D Sbjct: 171 D 171 >gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943780;genbank:gi:38638405;genbank:GeneID :2657174 Length = 595 Score = 27.3 bits (59), Expect = 0.12, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Query: 25 EINLP------KLARKLEEYRAGGMNGAIQIDMGNEKLELETTYGGPMREILKQYGTTAV 78 EI++P LA RA N +I + L+L T+ MRE ++ YGT V Sbjct: 111 EISMPPQEGKSTLAAVATPLRALQHNPHRKIILATYALDLAETHSRTMREWIETYGTDVV 170 Query: 79 D 79 D Sbjct: 171 D 171 >gi|1299|lcl|protein:vir:105078 Length: 155 # NCBI annotation: major tail shaft subunit # Family: family:all:11396 # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006592;genbank:gi:46402098;genbank:GeneID :2777944 Length = 155 Score = 25.4 bits (54), Expect = 0.44, Method: Compositional matrix adjust. Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Query: 82 MIRFAGAYQHEDTKEV-DAVEIVVRGRHTEIDFGTAKAGA 120 ++ +G +E T + ++I V+G+ I +GTA A A Sbjct: 113 LLALSGWQMNEITAPASEVIQITVQGKQNSIKWGTAGANA 152 >gi|8237|lcl|protein:vir:101512 Length: 280 # NCBI annotation: gp25 # Family: family:all:5054 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655404;genbank:gi:109522592;genbank:GeneI D:4157584 Length = 280 Score = 23.1 bits (48), Expect = 1.9, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 9/19 (47%) Query: 13 FADGVVHTGECEEINLPKL 31 F DG H C + LP L Sbjct: 144 FGDGTFHITSCSGVGLPLL 162 >gi|9086|lcl|protein:vir:102193 Length: 280 # NCBI annotation: gp24 # Family: family:all:5054 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655220;genbank:gi:109522800;genbank:GeneI D:4157432 Length = 280 Score = 23.1 bits (48), Expect = 1.9, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 9/19 (47%) Query: 13 FADGVVHTGECEEINLPKL 31 F DG H C + LP L Sbjct: 144 FGDGTFHITSCSGVGLPLL 162 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.137 0.400 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,609 Number of Sequences: 514 Number of extensions: 3049 Number of successful extensions: 32 Number of sequences better than 100.0: 20 Number of HSP's better than 100.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 22 length of query: 169 length of database: 206,069 effective HSP length: 66 effective length of query: 103 effective length of database: 172,145 effective search space: 17730935 effective search space used: 17730935 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 34 (17.7 bits)