Query lcl|Aclame:protein:vir:105782|NCBI_annot:gp5|genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Match_columns 449 No_of_seqs 131 out of 244 Neff 7.8 Searched_HMMs 1612 Date Sun Dec 1 11:45:38 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_79 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_79_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:105782 Length: 449 100.0 7E-143 5E-146 799.8 47.3 449 1-449 1-449 (449) 2 protein:vir:5249 Length: 437 # 100.0 1E-107 9E-111 606.3 41.2 409 19-449 1-433 (437) 3 protein:vir:104338 Length: 422 100.0 5E-104 3E-107 586.9 38.9 398 18-449 1-421 (422) 4 protein:vir:99563 Length: 862 100.0 1E-103 6E-107 585.3 39.0 421 1-449 68-544 (862) 5 protein:vir:96068 Length: 765 100.0 7E-104 4E-107 586.2 37.5 418 1-449 43-514 (765) 6 protein:vir:79647 Length: 435 100.0 2E-103 1E-106 583.7 39.6 404 1-448 5-435 (435) 7 protein:vir:80040 Length: 461 100.0 4E-103 3E-106 581.9 39.8 421 1-449 1-459 (461) 8 protein:vir:94049 Length: 532 100.0 2E-103 2E-106 583.1 37.7 426 1-449 29-497 (532) 9 protein:vir:107662 Length: 427 100.0 7E-103 5E-106 580.5 38.0 399 9-449 1-419 (427) 10 protein:vir:107742 Length: 537 100.0 3E-102 2E-105 576.9 38.4 422 1-449 48-507 (537) 11 protein:vir:78589 Length: 695 100.0 6.2E-98 4E-101 553.5 38.5 416 1-449 46-548 (695) 12 protein:vir:101541 Length: 694 100.0 6.7E-98 4E-101 553.3 38.5 416 1-449 62-547 (694) 13 protein:vir:3648 Length: 695 # 100.0 5.5E-98 3E-101 553.8 37.2 416 1-449 63-548 (695) 14 protein:vir:106716 Length: 698 100.0 1.5E-97 1E-100 551.3 39.6 416 1-449 46-545 (698) 15 protein:vir:103219 Length: 201 100.0 1.7E-49 1E-52 288.0 19.5 191 250-449 1-199 (201) 16 protein:vir:79772 Length: 648 99.9 2.1E-21 1.3E-24 134.0 30.0 401 1-449 17-487 (648) 17 protein:vir:102118 Length: 409 99.7 6.1E-17 3.8E-20 109.5 28.4 381 1-447 2-409 (409) 18 protein:vir:1380 Length: 422 # 99.7 1.3E-16 8.1E-20 107.7 28.5 392 1-449 3-421 (422) 19 protein:vir:100691 Length: 535 99.7 1E-15 6.4E-19 102.8 32.1 405 1-449 13-499 (535) 20 protein:vir:1266 Length: 416 # 99.7 1.9E-16 1.2E-19 106.8 27.9 383 1-449 2-405 (416) 21 protein:vir:102855 Length: 432 99.7 3.2E-16 2E-19 105.5 28.8 387 1-449 3-428 (432) 22 protein:vir:107605 Length: 432 99.7 3.2E-16 2E-19 105.5 28.8 387 1-449 3-428 (432) 23 protein:vir:105002 Length: 432 99.7 3.2E-16 2E-19 105.5 28.8 387 1-449 3-428 (432) 24 protein:vir:4454 Length: 414 # 99.7 2E-16 1.3E-19 106.6 27.4 379 1-449 3-414 (414) 25 protein:vir:8418 Length: 409 # 99.6 5.1E-16 3.2E-19 104.4 26.5 370 23-449 1-407 (409) 26 protein:vir:483 Length: 413 # 99.6 2E-15 1.2E-18 101.2 29.2 379 1-449 2-413 (413) 27 protein:vir:102080 Length: 429 99.6 1.1E-15 6.8E-19 102.6 26.3 375 23-449 1-425 (429) 28 protein:vir:6240 Length: 457 # 99.6 5.7E-15 3.5E-18 98.7 30.2 374 23-448 1-457 (457) 29 protein:vir:100882 Length: 383 99.6 7.4E-16 4.6E-19 103.5 24.7 353 23-446 1-383 (383) 30 protein:vir:1326 Length: 457 # 99.6 3.9E-15 2.4E-18 99.6 28.1 377 23-449 1-448 (457) 31 protein:vir:960 Length: 413 # 99.6 9.7E-16 6E-19 102.9 24.7 373 1-447 4-413 (413) 32 protein:vir:4337 Length: 434 # 99.6 1.1E-15 6.7E-19 102.6 24.9 386 1-449 1-423 (434) 33 protein:vir:81152 Length: 411 99.6 3.2E-15 2E-18 100.1 26.7 374 23-447 1-411 (411) 34 protein:vir:7853 Length: 518 # 99.6 7.4E-15 4.6E-18 98.1 27.5 375 23-449 1-423 (518) 35 protein:vir:100187 Length: 385 99.6 3.1E-15 1.9E-18 100.2 25.1 359 1-444 3-385 (385) 36 protein:vir:8100 Length: 466 # 99.6 1.5E-14 9.1E-18 96.4 28.3 407 1-449 3-459 (466) 37 protein:vir:3153 Length: 467 # 99.6 1E-14 6.3E-18 97.3 27.0 365 54-449 1-457 (467) 38 protein:vir:10362 Length: 432 99.6 1E-14 6.3E-18 97.3 25.9 379 1-449 9-422 (432) 39 protein:vir:5737 Length: 419 # 99.6 1.3E-14 8.3E-18 96.7 26.5 369 23-449 1-413 (419) 40 protein:vir:97060 Length: 432 99.6 9E-15 5.6E-18 97.6 25.5 379 1-449 9-420 (432) 41 protein:vir:81095 Length: 416 99.6 2.3E-14 1.4E-17 95.4 27.2 379 1-449 3-405 (416) 42 protein:vir:4598 Length: 416 # 99.6 2.3E-14 1.4E-17 95.4 27.2 379 1-449 3-405 (416) 43 protein:vir:93610 Length: 454 99.6 2.7E-14 1.7E-17 95.0 27.4 389 1-449 1-422 (454) 44 protein:vir:63755 Length: 547 99.6 1.8E-13 1.1E-16 90.5 31.8 408 1-449 3-498 (547) 45 protein:vir:81072 Length: 432 99.6 1.5E-14 9.4E-18 96.4 25.9 385 1-448 1-432 (432) 46 protein:vir:2683 Length: 412 # 99.6 6.8E-14 4.2E-17 92.8 29.4 382 1-449 1-409 (412) 47 protein:vir:80644 Length: 551 99.5 1.3E-13 7.9E-17 91.3 30.8 395 1-449 39-502 (551) 48 protein:vir:3843 Length: 397 # 99.5 2.3E-14 1.4E-17 95.3 26.5 360 23-448 1-397 (397) 49 protein:vir:80796 Length: 574 99.5 1.8E-13 1.1E-16 90.5 31.2 400 1-449 41-518 (574) 50 protein:vir:101648 Length: 518 99.5 7.7E-14 4.8E-17 92.5 27.9 371 23-449 1-423 (518) 51 protein:vir:95378 Length: 406 99.5 3E-14 1.9E-17 94.7 25.2 369 1-449 3-400 (406) 52 protein:vir:1884 Length: 424 # 99.5 6.2E-14 3.8E-17 93.0 26.7 371 1-449 16-424 (424) 53 protein:vir:93943 Length: 409 99.5 1.4E-13 8.7E-17 91.1 28.5 377 1-449 1-406 (409) 54 protein:vir:4156 Length: 542 # 99.5 4.4E-14 2.7E-17 93.8 25.6 396 1-449 1-443 (542) 55 protein:vir:96980 Length: 409 99.5 2.4E-13 1.5E-16 89.8 29.0 379 1-449 1-406 (409) 56 protein:vir:94426 Length: 409 99.5 1.8E-13 1.1E-16 90.4 28.0 378 1-449 1-406 (409) 57 protein:vir:99312 Length: 563 99.5 1.6E-12 1E-15 85.2 32.9 401 1-449 42-529 (563) 58 protein:vir:95599 Length: 563 99.5 1.6E-12 1E-15 85.2 32.9 401 1-449 42-529 (563) 59 protein:vir:100650 Length: 395 99.5 3.3E-14 2E-17 94.5 23.2 352 23-449 1-384 (395) 60 protein:vir:101289 Length: 395 99.5 3.3E-14 2E-17 94.5 23.2 352 23-449 1-384 (395) 61 protein:vir:9507 Length: 395 # 99.5 3.3E-14 2E-17 94.5 23.2 352 23-449 1-384 (395) 62 protein:vir:189 Length: 424 # 99.5 7.9E-14 4.9E-17 92.4 25.3 385 1-449 1-424 (424) 63 protein:vir:102727 Length: 945 99.5 3.7E-13 2.3E-16 88.8 28.4 400 1-449 64-540 (945) 64 protein:vir:100249 Length: 431 99.5 1.9E-13 1.2E-16 90.3 26.8 393 1-449 3-430 (431) 65 protein:vir:80333 Length: 419 99.5 2.1E-13 1.3E-16 90.1 26.4 380 1-449 1-411 (419) 66 protein:vir:1431 Length: 419 # 99.5 1.6E-13 1E-16 90.7 24.9 380 1-449 2-409 (419) 67 protein:vir:4952 Length: 386 # 99.5 4.2E-13 2.6E-16 88.5 27.0 366 1-444 3-386 (386) 68 protein:vir:3868 Length: 417 # 99.5 2.2E-13 1.3E-16 90.0 25.3 368 23-449 1-404 (417) 69 protein:vir:100150 Length: 437 99.5 5.5E-13 3.4E-16 87.8 27.1 381 1-449 1-433 (437) 70 protein:vir:105064 Length: 421 99.4 1.5E-13 9.6E-17 90.8 23.7 383 1-449 1-412 (421) 71 protein:vir:104259 Length: 403 99.4 4.1E-13 2.6E-16 88.5 25.4 357 23-449 1-400 (403) 72 protein:vir:81218 Length: 423 99.4 2E-13 1.2E-16 90.2 23.2 383 23-447 1-423 (423) 73 protein:vir:9359 Length: 348 # 99.4 3.2E-13 2E-16 89.1 24.4 319 39-447 1-348 (348) 74 protein:vir:95965 Length: 385 99.4 3.8E-13 2.3E-16 88.7 23.8 349 23-444 1-385 (385) 75 protein:vir:101647 Length: 460 99.4 1.9E-12 1.2E-15 84.8 27.4 391 1-448 1-460 (460) 76 protein:vir:98396 Length: 441 99.4 1.4E-12 8.4E-16 85.6 26.5 384 1-449 17-432 (441) 77 protein:vir:99452 Length: 651 99.4 6.4E-13 3.9E-16 87.5 24.6 411 1-449 1-540 (651) 78 protein:vir:9702 Length: 406 # 99.4 4.8E-13 3E-16 88.1 23.7 366 23-448 1-406 (406) 79 protein:vir:4509 Length: 424 # 99.4 1.1E-12 6.6E-16 86.2 25.6 374 1-446 18-424 (424) 80 protein:vir:6210 Length: 394 # 99.4 3.4E-12 2.1E-15 83.5 27.6 347 1-447 3-394 (394) 81 protein:vir:94666 Length: 723 99.4 3.1E-12 1.9E-15 83.7 27.3 371 25-449 1-412 (723) 82 protein:vir:9408 Length: 441 # 99.4 2E-12 1.2E-15 84.7 25.4 387 1-449 11-434 (441) 83 protein:vir:79984 Length: 441 99.4 2E-12 1.2E-15 84.7 25.4 387 1-449 11-434 (441) 84 protein:vir:96579 Length: 576 99.4 1.8E-11 1.1E-14 79.5 29.6 410 1-449 8-519 (576) 85 protein:vir:4194 Length: 540 # 99.4 9.2E-12 5.7E-15 81.1 27.8 392 1-449 1-447 (540) 86 protein:vir:9641 Length: 395 # 99.4 2.1E-12 1.3E-15 84.6 24.2 367 23-447 1-395 (395) 87 protein:vir:78310 Length: 376 99.4 2.7E-12 1.7E-15 84.0 24.7 350 23-442 1-376 (376) 88 protein:vir:79538 Length: 502 99.3 2.6E-11 1.6E-14 78.6 30.0 422 1-447 3-502 (502) 89 protein:vir:7407 Length: 392 # 99.3 1.5E-11 9.2E-15 80.0 28.3 376 1-446 1-392 (392) 90 protein:vir:4854 Length: 386 # 99.3 4.7E-12 2.9E-15 82.7 25.5 367 1-444 3-386 (386) 91 protein:vir:4089 Length: 395 # 99.3 2.2E-12 1.4E-15 84.5 23.5 355 23-447 1-395 (395) 92 protein:vir:1023 Length: 392 # 99.3 1.8E-11 1.1E-14 79.5 28.1 373 1-446 5-392 (392) 93 protein:vir:3989 Length: 392 # 99.3 1.8E-11 1.1E-14 79.5 28.1 373 1-446 5-392 (392) 94 protein:vir:8317 Length: 409 # 99.3 6.5E-12 4E-15 81.9 25.1 351 23-441 1-409 (409) 95 protein:vir:4995 Length: 384 # 99.3 2E-12 1.2E-15 84.8 22.3 365 1-437 3-384 (384) 96 protein:vir:98643 Length: 395 99.3 1.1E-11 6.7E-15 80.7 25.4 364 23-447 1-395 (395) 97 protein:vir:95542 Length: 548 99.3 9.9E-11 6.1E-14 75.4 28.5 418 1-449 3-505 (548) 98 protein:vir:7987 Length: 456 # 99.3 2.1E-11 1.3E-14 79.1 24.4 407 1-449 1-455 (456) 99 protein:vir:80134 Length: 403 99.2 8.5E-12 5.3E-15 81.3 22.1 367 23-449 1-397 (403) 100 protein:vir:102602 Length: 456 99.2 1.1E-11 6.5E-15 80.8 22.2 406 1-449 1-447 (456) 101 protein:vir:105819 Length: 456 99.2 1.1E-11 6.5E-15 80.8 22.2 406 1-449 1-447 (456) 102 protein:vir:94002 Length: 378 99.2 7.3E-12 4.5E-15 81.6 20.6 336 23-449 1-372 (378) 103 protein:vir:93867 Length: 378 99.2 1.2E-11 7.2E-15 80.5 20.9 337 23-449 1-377 (378) 104 protein:vir:4828 Length: 382 # 99.2 4.4E-11 2.7E-14 77.4 23.9 356 23-444 1-382 (382) 105 protein:vir:1661 Length: 378 # 99.2 1.1E-11 6.5E-15 80.8 20.1 334 23-449 1-372 (378) 106 protein:vir:389 Length: 530 # 99.2 6.4E-11 4E-14 76.5 24.3 423 1-449 1-530 (530) 107 protein:vir:104082 Length: 485 99.2 1E-09 6.5E-13 69.8 29.9 406 1-449 1-485 (485) 108 protein:vir:107880 Length: 491 99.2 7.8E-10 4.8E-13 70.5 28.7 385 1-449 1-411 (491) 109 protein:vir:3420 Length: 533 # 99.1 5.7E-10 3.5E-13 71.3 27.0 424 1-449 1-532 (533) 110 protein:vir:98444 Length: 434 99.1 4.5E-10 2.8E-13 71.8 25.6 370 44-447 1-434 (434) 111 protein:vir:93747 Length: 472 99.1 1.7E-09 1.1E-12 68.6 27.7 402 1-448 18-472 (472) 112 protein:vir:6382 Length: 553 # 99.1 2.4E-09 1.5E-12 67.9 28.1 432 1-446 1-553 (553) 113 protein:vir:94869 Length: 378 99.1 2.4E-10 1.5E-13 73.3 22.1 334 1-449 3-372 (378) 114 protein:vir:94805 Length: 492 99.1 2.1E-09 1.3E-12 68.2 27.1 402 1-446 37-492 (492) 115 protein:vir:10321 Length: 495 99.1 4.8E-10 3E-13 71.7 23.5 413 1-443 3-495 (495) 116 protein:vir:1082 Length: 359 # 99.1 5.4E-10 3.4E-13 71.4 23.7 336 23-429 1-359 (359) 117 protein:vir:7768 Length: 484 # 99.1 3.4E-09 2.1E-12 67.0 30.5 402 1-449 1-484 (484) 118 protein:vir:80959 Length: 499 99.0 5.9E-10 3.7E-13 71.2 23.3 403 1-441 1-499 (499) 119 protein:vir:96738 Length: 505 99.0 2.5E-09 1.6E-12 67.7 26.2 409 1-447 1-505 (505) 120 protein:vir:79063 Length: 491 99.0 5.7E-09 3.5E-12 65.8 29.4 385 1-449 1-419 (491) 121 protein:vir:858 Length: 378 # 99.0 6.8E-10 4.2E-13 70.9 22.1 329 23-449 1-372 (378) 122 protein:vir:95806 Length: 440 99.0 7.6E-10 4.7E-13 70.6 22.0 404 1-446 1-440 (440) 123 protein:vir:78227 Length: 480 99.0 4.8E-09 3E-12 66.2 26.2 403 1-449 1-473 (480) 124 protein:vir:38 Length: 496 # N 99.0 2.2E-09 1.4E-12 68.1 24.0 406 1-441 1-496 (496) 125 protein:vir:99072 Length: 479 99.0 2.9E-09 1.8E-12 67.4 24.1 402 1-449 9-473 (479) 126 protein:vir:97336 Length: 492 98.9 1.2E-08 7.7E-12 63.9 26.9 401 1-446 44-492 (492) 127 protein:vir:1236 Length: 483 # 98.9 1.3E-08 8E-12 63.9 27.0 403 1-448 35-483 (483) 128 protein:vir:9751 Length: 422 # 98.9 2.6E-09 1.6E-12 67.6 22.6 388 1-445 1-422 (422) 129 protein:vir:5961 Length: 503 # 98.9 1.9E-08 1.2E-11 62.9 29.9 411 1-449 11-503 (503) 130 protein:vir:95113 Length: 474 98.9 2.1E-08 1.3E-11 62.7 28.7 400 1-446 1-474 (474) 131 protein:vir:94498 Length: 474 98.9 2.3E-08 1.4E-11 62.5 26.7 406 1-448 1-474 (474) 132 protein:vir:97447 Length: 474 98.9 2.3E-08 1.4E-11 62.5 26.7 406 1-448 1-474 (474) 133 protein:vir:79703 Length: 505 98.9 4.5E-09 2.8E-12 66.4 22.1 399 1-446 3-505 (505) 134 protein:vir:79043 Length: 479 98.9 1.8E-08 1.1E-11 63.0 25.3 405 1-442 20-479 (479) 135 protein:vir:94742 Length: 409 98.9 1.4E-08 8.9E-12 63.6 24.5 378 1-429 1-409 (409) 136 protein:vir:99522 Length: 470 98.9 2.6E-08 1.6E-11 62.1 26.1 393 1-442 1-470 (470) 137 protein:vir:96494 Length: 501 98.8 3.6E-08 2.3E-11 61.4 26.5 414 1-449 37-493 (501) 138 protein:vir:107112 Length: 478 98.8 3.9E-08 2.4E-11 61.2 27.8 403 1-446 16-478 (478) 139 protein:vir:99916 Length: 504 98.8 4E-08 2.5E-11 61.2 32.3 422 1-449 1-495 (504) 140 protein:vir:2427 Length: 485 # 98.8 4E-08 2.5E-11 61.1 31.4 402 1-449 13-485 (485) 141 protein:vir:96839 Length: 474 98.8 2.2E-08 1.3E-11 62.6 23.7 398 1-444 26-474 (474) 142 protein:vir:5839 Length: 533 # 98.8 4.1E-09 2.6E-12 66.5 19.6 410 1-449 1-517 (533) 143 protein:vir:97171 Length: 512 98.8 4.5E-08 2.8E-11 60.9 28.8 412 1-447 31-512 (512) 144 protein:vir:102950 Length: 471 98.8 3.7E-08 2.3E-11 61.4 24.6 402 1-446 1-471 (471) 145 protein:vir:105292 Length: 478 98.8 4.8E-08 3E-11 60.7 29.5 399 1-446 16-478 (478) 146 protein:vir:3028 Length: 500 # 98.8 3.2E-08 2E-11 61.7 23.9 407 1-446 3-500 (500) 147 protein:vir:9815 Length: 500 # 98.8 3.2E-08 2E-11 61.7 23.9 407 1-446 3-500 (500) 148 protein:vir:78537 Length: 480 98.8 5.8E-08 3.6E-11 60.3 25.8 402 1-449 1-473 (480) 149 protein:vir:9568 Length: 410 # 98.8 1E-08 6.3E-12 64.4 20.3 373 7-449 1-407 (410) 150 protein:vir:2500 Length: 501 # 98.7 6.7E-08 4.2E-11 59.9 31.7 409 1-449 23-499 (501) 151 protein:vir:95899 Length: 474 98.7 7.1E-08 4.4E-11 59.8 28.5 401 1-446 1-474 (474) 152 protein:vir:96266 Length: 474 98.7 7.1E-08 4.4E-11 59.8 28.5 401 1-446 1-474 (474) 153 protein:vir:1587 Length: 508 # 98.7 7.6E-08 4.7E-11 59.6 25.6 406 1-446 3-508 (508) 154 protein:vir:108215 Length: 469 98.7 9.1E-08 5.6E-11 59.2 32.7 404 1-449 1-455 (469) 155 protein:vir:105889 Length: 474 98.7 9.1E-08 5.7E-11 59.2 28.5 414 1-446 15-474 (474) 156 protein:vir:94101 Length: 474 98.7 9.1E-08 5.7E-11 59.2 28.5 414 1-446 15-474 (474) 157 protein:vir:99781 Length: 511 98.7 9.6E-08 5.9E-11 59.1 29.7 412 1-446 31-511 (511) 158 protein:vir:80680 Length: 441 98.7 1E-07 6.5E-11 58.9 24.0 386 1-449 1-428 (441) 159 protein:vir:106639 Length: 481 98.7 1.1E-07 6.9E-11 58.7 27.9 403 1-442 30-481 (481) 160 protein:vir:8184 Length: 474 # 98.7 1.2E-07 7.2E-11 58.6 27.3 417 1-449 12-470 (474) 161 protein:vir:96179 Length: 468 98.6 1.5E-07 9.1E-11 58.0 27.8 384 1-448 26-468 (468) 162 protein:vir:4223 Length: 486 # 98.6 1.5E-07 9.4E-11 58.0 29.5 405 1-449 1-479 (486) 163 protein:vir:78907 Length: 518 98.6 8.2E-08 5.1E-11 59.4 22.1 420 1-449 3-517 (518) 164 protein:vir:1634 Length: 409 # 98.6 1E-07 6.3E-11 58.9 22.4 375 1-429 1-409 (409) 165 protein:vir:4898 Length: 502 # 98.6 1.8E-07 1.1E-10 57.5 30.0 409 1-446 38-502 (502) 166 protein:vir:2732 Length: 501 # 98.6 2E-07 1.2E-10 57.4 28.3 410 1-446 37-501 (501) 167 protein:vir:78641 Length: 278 98.6 3.5E-08 2.1E-11 61.5 19.2 262 75-383 1-278 (278) 168 protein:vir:2341 Length: 488 # 98.6 2.6E-07 1.6E-10 56.7 30.3 409 1-449 12-488 (488) 169 protein:vir:102330 Length: 451 98.6 2.6E-07 1.6E-10 56.7 27.1 383 13-449 1-443 (451) 170 protein:vir:96366 Length: 511 98.6 3E-07 1.8E-10 56.4 29.4 412 1-448 40-511 (511) 171 protein:vir:78805 Length: 511 98.6 3E-07 1.8E-10 56.4 29.4 412 1-448 40-511 (511) 172 protein:vir:9306 Length: 511 # 98.6 3E-07 1.9E-10 56.3 27.8 414 1-448 31-511 (511) 173 protein:vir:9922 Length: 489 # 98.5 3.3E-07 2E-10 56.1 27.7 412 1-447 15-489 (489) 174 protein:vir:99853 Length: 488 98.5 3.6E-07 2.2E-10 55.9 33.8 386 9-449 1-403 (488) 175 protein:vir:103951 Length: 511 98.5 3.7E-07 2.3E-10 55.8 28.0 412 1-447 40-511 (511) 176 protein:vir:96240 Length: 511 98.5 4.7E-07 2.9E-10 55.3 28.2 414 1-447 31-511 (511) 177 protein:vir:3609 Length: 452 # 98.5 5E-07 3.1E-10 55.1 28.0 393 1-446 17-452 (452) 178 protein:vir:733 Length: 453 # 98.5 3.1E-07 1.9E-10 56.3 21.0 391 1-449 17-445 (453) 179 protein:vir:98816 Length: 446 98.4 7.2E-07 4.4E-10 54.3 27.5 402 1-432 1-446 (446) 180 protein:vir:9871 Length: 429 # 98.4 9.6E-07 5.9E-10 53.6 29.6 386 1-441 1-429 (429) 181 protein:vir:3964 Length: 453 # 98.4 9.7E-07 6E-10 53.5 28.5 395 1-442 17-453 (453) 182 protein:vir:103860 Length: 528 98.3 1.5E-06 9.1E-10 52.6 32.9 395 1-449 1-450 (528) 183 protein:vir:4782 Length: 522 # 98.3 1.9E-06 1.2E-09 52.0 26.6 409 1-447 3-522 (522) 184 protein:vir:105461 Length: 470 98.2 2.4E-06 1.5E-09 51.4 29.6 406 1-441 2-470 (470) 185 protein:vir:98883 Length: 517 98.2 2.4E-06 1.5E-09 51.4 24.6 419 1-441 3-517 (517) 186 protein:vir:79233 Length: 526 98.1 4E-06 2.5E-09 50.2 27.8 395 1-449 1-434 (526) 187 protein:vir:7208 Length: 524 # 98.1 4.8E-06 3E-09 49.7 19.8 413 1-445 24-524 (524) 188 protein:vir:103458 Length: 524 98.1 5E-06 3.1E-09 49.7 19.8 413 1-445 24-524 (524) 189 protein:vir:94546 Length: 506 98.0 8E-06 5E-09 48.5 29.8 420 1-446 22-506 (506) 190 protein:vir:99232 Length: 526 98.0 9.1E-06 5.7E-09 48.2 30.9 395 1-449 1-434 (526) 191 protein:vir:106571 Length: 499 97.9 1.1E-05 6.8E-09 47.8 30.1 403 1-449 5-492 (499) 192 protein:vir:104500 Length: 537 97.9 1.1E-05 6.9E-09 47.7 25.1 417 1-449 1-525 (537) 193 protein:vir:106999 Length: 564 97.9 1.2E-05 7.2E-09 47.6 22.5 412 1-449 1-550 (564) 194 protein:vir:6896 Length: 523 # 97.9 1.5E-05 9.2E-09 47.1 19.9 418 1-443 5-523 (523) 195 protein:vir:101189 Length: 516 97.8 1.7E-05 1.1E-08 46.7 21.9 413 1-445 3-516 (516) 196 protein:vir:101806 Length: 516 97.8 1.7E-05 1.1E-08 46.7 21.9 413 1-445 3-516 (516) 197 protein:vir:106282 Length: 521 97.8 2E-05 1.2E-08 46.4 19.7 415 1-443 5-521 (521) 198 protein:vir:108049 Length: 524 97.7 2.2E-05 1.4E-08 46.1 20.8 417 1-443 7-524 (524) 199 protein:vir:81017 Length: 521 97.7 2.3E-05 1.4E-08 46.0 21.7 415 1-443 1-521 (521) 200 protein:vir:98265 Length: 524 97.7 2.9E-05 1.8E-08 45.5 22.7 414 1-439 6-524 (524) 201 protein:vir:78161 Length: 355 97.7 3.2E-05 2E-08 45.2 22.6 298 125-449 1-330 (355) 202 protein:vir:5665 Length: 511 # 97.6 3.3E-05 2E-08 45.2 17.2 402 1-443 16-511 (511) 203 protein:vir:78083 Length: 537 97.6 4.2E-05 2.6E-08 44.6 26.7 416 1-449 1-525 (537) 204 protein:vir:1986 Length: 512 # 97.5 5.9E-05 3.7E-08 43.8 29.1 394 1-449 1-431 (512) 205 protein:vir:79511 Length: 448 97.4 7.8E-05 4.8E-08 43.1 31.5 403 1-449 1-437 (448) 206 protein:vir:101494 Length: 527 97.1 0.00018 1.1E-07 41.1 19.2 398 7-449 1-526 (527) 207 protein:vir:6596 Length: 521 # 97.0 0.00021 1.3E-07 40.8 23.7 417 1-443 1-521 (521) 208 protein:vir:95254 Length: 488 97.0 0.00022 1.4E-07 40.6 31.4 412 1-449 1-472 (488) 209 protein:vir:102239 Length: 527 97.0 0.00022 1.4E-07 40.6 19.2 398 7-449 1-526 (527) 210 protein:vir:100598 Length: 516 97.0 0.00023 1.4E-07 40.5 20.8 412 1-445 3-516 (516) 211 protein:vir:267 Length: 348 # 96.9 0.00025 1.5E-07 40.3 18.2 316 1-394 1-348 (348) 212 protein:vir:103177 Length: 533 96.6 0.00051 3.2E-07 38.6 23.3 418 1-449 1-519 (533) 213 protein:vir:6058 Length: 344 # 96.5 0.0006 3.7E-07 38.2 19.1 315 1-388 1-344 (344) 214 protein:vir:7430 Length: 563 # 96.3 0.00075 4.6E-07 37.7 21.3 395 7-449 1-519 (563) 215 protein:vir:3780 Length: 345 # 96.1 0.001 6.3E-07 37.0 17.5 319 1-385 1-345 (345) 216 protein:vir:2013 Length: 344 # 95.9 0.0013 8.3E-07 36.3 17.4 318 1-388 1-344 (344) 217 protein:vir:3743 Length: 345 # 95.7 0.0015 9.6E-07 36.0 18.1 320 1-385 1-345 (345) 218 protein:vir:78191 Length: 351 95.4 0.0022 1.4E-06 35.1 19.4 319 1-392 1-351 (351) 219 protein:vir:104892 Length: 558 95.3 0.0023 1.4E-06 35.0 24.0 415 1-449 1-549 (558) 220 protein:vir:77981 Length: 448 95.3 0.0024 1.5E-06 35.0 30.5 398 1-449 1-441 (448) 221 protein:vir:4698 Length: 251 # 95.2 0.0025 1.5E-06 34.9 15.3 239 1-291 3-251 (251) 222 protein:vir:79150 Length: 368 95.2 0.0025 1.6E-06 34.8 18.0 326 1-399 13-368 (368) 223 protein:vir:79207 Length: 351 95.2 0.0026 1.6E-06 34.7 20.1 320 1-392 1-351 (351) 224 protein:vir:98853 Length: 219 94.7 0.0038 2.3E-06 33.9 15.7 200 151-390 1-219 (219) 225 protein:vir:1150 Length: 350 # 94.3 0.0047 2.9E-06 33.3 17.7 311 1-383 1-350 (350) 226 protein:vir:103971 Length: 376 94.1 0.0053 3.3E-06 33.1 19.4 317 1-392 26-376 (376) 227 protein:vir:98567 Length: 340 93.9 0.0059 3.7E-06 32.8 18.0 312 1-389 1-340 (340) 228 protein:vir:100328 Length: 346 93.3 0.0082 5.1E-06 32.0 14.4 318 1-390 1-346 (346) 229 protein:vir:5691 Length: 344 # 91.1 0.017 1.1E-05 30.2 18.4 314 1-392 1-344 (344) 230 protein:vir:78749 Length: 337 83.3 0.069 4.3E-05 26.9 19.4 306 1-386 1-337 (337) 231 protein:vir:97265 Length: 513 76.9 0.13 8.1E-05 25.4 20.6 406 1-449 1-501 (513) 232 protein:vir:101418 Length: 569 74.6 0.16 9.7E-05 25.0 23.6 422 1-449 45-551 (569) 233 protein:vir:95149 Length: 501 22.0 2.5 0.0016 18.4 21.1 396 1-449 1-485 (501) No 1 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=100.00 E-value=7.4e-143 Score=799.80 Aligned_cols=449 Identities=100% Similarity=1.462 Sum_probs=434.3 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) |++||++||||+++.++++|.|++|.|+++|+||+||++|++||||..+++++|+++|++|||+++|||+|+++|||+|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~rd~l~~~~~glg~~r~~~~~~~g~~~~~~~~~l~~~Yr~~~ia~~iVd~~~d~~~~~~~ 80 (449) T protein:vir:10 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) T ss_pred CchhhHHHHhhhcchhHHHHHHHHHHHHHhcCCcccchhhhhcCCcccCCHHHHHHHHhcCchhHHHHHhhhhhhhhcCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccccCC Q lcl|Aclame:pro 81 EIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLK 160 (449) Q Consensus 81 ~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~ 160 (449) +|+.+++.++.++.+.||+++++|+.+++|++++||++|+||||||+|++.++|++++++||+.+++|++|+|+|+++++ T Consensus 81 ~i~~g~~~~~~~~~~~~e~~~~~l~~~~~~~~l~ea~~~~rl~Gga~i~i~v~d~~~l~~Pl~~~~~i~~i~v~~~~~i~ 160 (449) T protein:vir:10 81 EIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLK 160 (449) T ss_pred ccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcEEEEEEecCCCCCCcccccCcceeeEEeeccccCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHh Q lcl|Aclame:pro 161 VAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAA 240 (449) Q Consensus 161 ~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~ 240 (449) |..+++||+||+||+|++|+|++..++++..+++||||||++|++++.+|+|+|+++|+.+++++++.++++++++++++ T Consensus 161 ~~~~~~dp~sp~yg~P~~y~v~~~~~g~~~~~~~iH~SRl~~~~~~~~~g~~~L~~~yn~l~~~~~~~~~~a~~~l~~~~ 240 (449) T protein:vir:10 161 VAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAA 240 (449) T ss_pred hhhhhcCCCCCCCCCceEEEEeeeccCCCccceeeccceeEeecCCCCCChhHHHHHHHHhhhHHHhhhhHHHHHHHHHH Confidence 99999999999999999999998888888888999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeecccCChHHHHHHHHHHHHhhhcC Q lcl|Aclame:pro 241 RQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSVADPTATYNVNLQTAAAGVDI 320 (449) Q Consensus 241 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~lsgl~d~~~~~~~~iaaas~I 320 (449) +++.+.+.+++++.++++.++.+.+++.++++.++..++++++.++++++++|++++++|||++++++++++.+||+++| T Consensus 241 rq~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~sgl~d~l~~~~q~iaaa~~I 320 (449) T protein:vir:10 241 RQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSVADPTATYNVNLQTAAAGVDI 320 (449) T ss_pred HHHhhhhhhhhhhhhhhHHhhCCchHHHHHHHHHHHHHhccchheeecCCcceEEEecccCChhHHHHHHHHHHHHHhCC Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999 Q ss_pred CceeeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 321 PTRILIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGE 400 (449) Q Consensus 321 P~t~L~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~ 400 (449) |+||||||||||+||+||++|||++|+++|+.+.+.+.+++++|++++++++|++|+|+|+|||+||+|||||+++++|+ T Consensus 321 P~t~L~Gqsp~glnst~D~~nyyd~i~~~Q~~l~p~le~l~~~l~~s~~g~~~~d~~i~f~pL~~~t~kEkAei~k~~A~ 400 (449) T protein:vir:10 321 PTRILIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGE 400 (449) T ss_pred CeeeeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCCCCceeEEeCCCCCCCHHHHHHHHHHHHH Confidence 99999999999999999999999999999987544466777789999999999999999999999999999999999999 Q ss_pred HHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCCCCCcchhhcccccCC Q lcl|Aclame:pro 401 INQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGEEDGDEEDKATDSAA 449 (449) Q Consensus 401 a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~~~~~~ee~~~~~~~a 449 (449) ++++++++|..++++++|+|+.+++++.+.++.++++++|++.+.+++| T Consensus 401 a~~~~~~ag~~~~~~~~EiR~~~~~~~~~~~~~~~e~~de~~~~~d~~a 449 (449) T protein:vir:10 401 INQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGEEDGDEEDKATDSAA 449 (449) T ss_pred HHHHHHHccccCCcCHHHHHHHhcccCCCCCCCCCCCCccccccCCcCC Confidence 9999999999999999999999999999999999999999999999999 No 2 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=100.00 E-value=1.4e-107 Score=606.35 Aligned_cols=409 Identities=14% Similarity=0.156 Sum_probs=340.6 Q ss_pred HHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHH Q lcl|Aclame:pro 19 ARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWE 98 (449) Q Consensus 19 ~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e 98 (449) .+.-+++.|+++|+||.|++++..++++..+++++|+++|++||++|||||+||+||||+|++|.+.+ .+.+....++ T Consensus 1 ~~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~~~~vd~~a~d~~r~~~~i~~~d--~~~~~~~~~~ 78 (437) T protein:vir:52 1 MKFFDGIKSLALKLGSKQEQTYYSPSLSLTDDLVQLEALWRDNWIANKVCIKRPEDMVRNWREIYSND--LNSKQLDLFT 78 (437) T ss_pred CchhhhhHhHHhcCCCccccceeecCccccccHHHHHHHHHhCchhhHHhhcchHHhhcCCceEecCC--CCHHHHHHHH Confidence 44578899999999999999999999999999999999999999999999999999999999997643 2334455677 Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChh-hhhccccccccCCce Q lcl|Aclame:pro 99 KKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVA-EWDTGINSKTYGQPK 177 (449) Q Consensus 99 ~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~-~~~~Dp~s~~yg~P~ 177 (449) +.+++| ++|++|+++++|+||||+|++++.+ |++++++||++..++++|+|+++++++|. ..++||+||+||+|+ T Consensus 79 ~~~~~l---~~~~~l~~a~~~~rl~G~a~i~i~~-d~~~~~~pl~~~~~~~~~~v~~~~~v~~~~~~~~dp~s~~fg~p~ 154 (437) T protein:vir:52 79 KFERSL---KLRETLTKALQWSSLYGSVGLLVVT-DSQNTSAPLKPTERLKRLIILPKWKISPTGTKDDDVLSPNFGRYS 154 (437) T ss_pred HHHHhh---cHHHHHHHHHHhcccccceEEEEEe-cCCCcccccccCCceeEEEEechhhccccccccccccccccCcce Confidence 777777 6899999999999999999999888 67899999999888999999999999974 456899999999999 Q ss_pred eEEeeecccCCCccceEEccceeeeccCC-------CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhh Q lcl|Aclame:pro 178 LWKYTERLPNGSSRRVDIHPDRVFILGDY-------SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKE 250 (449) Q Consensus 178 ~y~i~~~~~~~~~~~~~IH~SRli~~~~~-------~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~ 250 (449) +|+|+. ...+++|||||||||.+. .+||+|+++++|++|.+++++..+++++++++.+.++++ T Consensus 155 ~y~v~~-----~~~~~~iH~SRii~~~~~~~~~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~~~~v~k~----- 224 (437) T protein:vir:52 155 EYSILG-----GSQSITVHHSRLIILNANDAPLSDNDIWGVSDLEKIIDVLKRFDSASVNVGDLIFESKIDIFKI----- 224 (437) T ss_pred EEEEec-----CCcceeEccceeEEecCccCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCceec----- Confidence 999962 344679999999999753 468999999999999999999999999999987665544 Q ss_pred hhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCc Q lcl|Aclame:pro 251 IDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQ 330 (449) Q Consensus 251 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~ 330 (449) .++++.++.+.++...++.+++..++++.++++++++|+|++++++||||++++++++++||++++||+|+|||+|| T Consensus 225 ---~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~sgl~~~l~~~~~~iaaa~~iP~t~L~G~s~ 301 (437) T protein:vir:52 225 ---AGLSDKIAAGMENEVASVISAVQEIKSATNSLLLDAENEYDRKELTFTGLKDLLTEFRNAVAGAADMPVTILFGQSV 301 (437) T ss_pred ---chHHHHhcCCcHHHHHHHHHHHHHhcCCCceEEEcCCcceEEEecCcCCHHHHHHHHHHHHHHHhcCchhhhcCcCc Confidence 34555555566667777777788888888889999999999999999999999999999999999999999999999 Q ss_pred cccccch-hHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 331 AERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDK-LIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGS 408 (449) Q Consensus 331 gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~-l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~ 408 (449) +|++|++ |++|||++|+++||..++|+++++.. |+++.++..|++|+|+|+|||++|++|+||+++++|+++++++++ T Consensus 302 ~Glasge~D~~~yyd~i~~~Qe~~l~p~le~l~~~i~~~~~g~~~~~~~~~f~pL~~~s~kekae~~~~~a~a~~~~~~~ 381 (437) T protein:vir:52 302 SGLASGDEDIQNYHEAIRRLQETRLRPIFEIIDPLICNELFGGLPADWWFEFVPLTTVKQEQQINMLNTFATAANTLIQN 381 (437) T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCcCCcCHHHHHHHHHHHHHHHHHHHhc Confidence 9997655 99999999999999988887776655 556678888899999999999999999999999999999999999 Q ss_pred CCccccCHHHHHHHh----cCCCCCCCC------CCCCCcc----hhhcccccCC Q lcl|Aclame:pro 409 GDNPAFSREEIRTAA----GYDNDDEEP------LGEEDGD----EEDKATDSAA 449 (449) Q Consensus 409 g~~~~~~~~e~r~~~----~~~~~~~~~------~~~~~~~----ee~~~~~~~a 449 (449) | +++++|+|+.. .+.+..++. .++..++ +...+...+. T Consensus 382 g---~i~~~e~r~~L~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (437) T protein:vir:52 382 G---VLNEYQIANELRESGLFANISAEHIEELKNADEFAGNFEEPEKMEGAQVQN 433 (437) T ss_pred C---CCCHHHHHHHHHhcCCCCCCCccccccccCCCCCCCccCCCCCCCCCCCCC Confidence 8 89999888764 222211111 0000011 1111111111 No 3 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=100.00 E-value=5e-104 Score=586.94 Aligned_cols=398 Identities=15% Similarity=0.139 Sum_probs=314.8 Q ss_pred HHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHH Q lcl|Aclame:pro 18 MARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSW 97 (449) Q Consensus 18 ~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~ 97 (449) +. --+++.|..+|++.+. ..++++..+++++++++|++||++|||||+||+||||+||+|.+. +. +..+ T Consensus 1 ~~-~~D~~~n~~~gg~~~~----~~~~~~~~~~~~~l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~~~-~~-----~~~~ 69 (422) T protein:vir:10 1 MV-KTDSYANIFLGGSDGS----EIYGSLQNQAPTILASLYADNALVRRIIDTIPETALAAGFHIDGI-DD-----EPAF 69 (422) T ss_pred Cc-cchhhHHHHcCCCCCc----cccCcccccCHHHHHHHHHhChhhHHHHhhhhHHHhcCCccccCC-CH-----HHHH Confidence 11 2456777766644332 336788899999999999999999999999999999999998532 21 1246 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccCCce Q lcl|Aclame:pro 98 EKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPK 177 (449) Q Consensus 98 e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~ 177 (449) +.++++| ++|++|+++++|+||||||++++.++|++++++||++...+++|+|+++++++|..+++||++|+||+|+ T Consensus 70 ~~~~~~l---~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~~~~~~dp~s~~fg~P~ 146 (422) T protein:vir:10 70 WSRWDDL---EMTQNINDAWSWARLFGGAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKVQTREENPRNARFGEPL 146 (422) T ss_pred HHHHHHh---hHHHHHHHHHHhhccccceEEEEEecCCCCccccccccCceeeEEeeccccccchhcccCccccccCcce Confidence 6666666 7899999999999999999999999999999999999888999999999999999999999999999999 Q ss_pred eEEeeecccCCCccceEEccceeeeccCC----------CCCcchhHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhhhh Q lcl|Aclame:pro 178 LWKYTERLPNGSSRRVDIHPDRVFILGDY----------SEDAIGFLEP-AYNAFVSLEKVEGGSGESFLKNAARQLNVN 246 (449) Q Consensus 178 ~y~i~~~~~~~~~~~~~IH~SRli~~~~~----------~~~G~s~l~~-~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~ 246 (449) +|+|... +.+.+++|||||||+|.|. .+||.|++++ +|++|++++++.++++++++++.+.+++++ T Consensus 147 ~y~v~~~---~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~v~~~~ 223 (422) T protein:vir:10 147 TYRITTN---ESDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQLLKRKQQAVWKAK 223 (422) T ss_pred EEEEecC---CCCcceeeccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccch Confidence 9999742 3445689999999999764 3689999975 899999999999999999999988877654 Q ss_pred hhhhhhHHHHHhhhccC--hHHHHHHHHHHHHHHhccccceeec-CCCceEEeecccCChHHHHHHHHHHHHhhhcCCce Q lcl|Aclame:pro 247 FEKEIDFTNLASLYGVS--IDELQDKFNEVAGEINRGNDVLMTT-QGATVTPLVTSVADPTATYNVNLQTAAAGVDIPTR 323 (449) Q Consensus 247 ~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~-~~ed~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t 323 (449) .+.++.+.+ ..++.+++. ...+..+..+.++++ ++|+|++++++||||++++++++++|||+++||+| T Consensus 224 --------~l~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~l~~~~e~~e~~~~~lsgl~~~~~~~~~~iaaa~~IP~t 294 (422) T protein:vir:10 224 --------GLAELCDDSEGFGAARLRLA-QVDNNSGVGQAIGIDAESEEYSVLNSDIGGIDAFLDKKFDRIVALSGIHEI 294 (422) T ss_pred --------hHHHhcCCccchHHHHHHHH-HHHHhcCCccceeEecCCcceEEEecccCChHHHHHHHHHHHHhhhCCCee Confidence 344443332 233344443 233333334445554 46889999999999999999999999999999999 Q ss_pred eeeccCccccccch--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 324 ILIGNQQAERSSTE--DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEI 401 (449) Q Consensus 324 ~L~Gqs~gg~~s~e--D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a 401 (449) ||||+||+|+|+|| |++|||++|+++||..++|++++|..+++. +++|+|+|+|||+||+|||||+++++|++ T Consensus 295 ~L~G~s~~Glnatgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~~i~~-----s~~~~~~f~pL~~~sekekaei~~~~a~a 369 (422) T protein:vir:10 295 ILKNKNVGGVSSSQNTALETFHKLVDRKRNAELLPILEFLIPFIVN-----AEEWSVEFNPLAQESSKDKAEILEKNVNS 369 (422) T ss_pred eeccCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCCcEEEeCCCCCCCHHHHHHHHHHHHHH Confidence 99999999998764 899999999999999999988888777664 36899999999999999999999999999 Q ss_pred HHHHHHcCCccccCHHHHHHHhc----CCCCCCCCCCCCCcchh---hcccccCC Q lcl|Aclame:pro 402 NQTMLGSGDNPAFSREEIRTAAG----YDNDDEEPLGEEDGDEE---DKATDSAA 449 (449) Q Consensus 402 ~~~~~~~g~~~~~~~~e~r~~~~----~~~~~~~~~~~~~~~ee---~~~~~~~a 449 (449) +++|+++| +++++|+|+... .....+...+++.++++ ....+... T Consensus 370 ~~~~~~~g---~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (422) T protein:vir:10 370 IAALIAAG---AMDIDEARDTLRTIAPEVKINDGSVETEVTISETSNDPLEVPTD 421 (422) T ss_pred HHHHHhcC---CCCHHHHHHHhhhhcccccCCCCCCccccchhhcCCCCCCCCCC Confidence 99999998 999999987652 22221111111111111 11111111 No 4 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=100.00 E-value=1e-103 Score=585.26 Aligned_cols=421 Identities=14% Similarity=0.134 Sum_probs=321.2 Q ss_pred Cch--------hhHHHHHhhhHH---HHHHHHHHHHHHHHhhcCcccccch--------hccCCcccCCHHHHHHHHHcC Q lcl|Aclame:pro 1 MTD--------KLTLAVNHALND---ARMARARMGLMVPTMGLDNKRHSAW--------CEYGFPELVTYENLYSLYRRG 61 (449) Q Consensus 1 ~~~--------~~~~~v~~~~~~---~~~~~~~~~~~~~~~g~~t~r~~~~--------~~~~~~~~~~~~~l~~~Y~~~ 61 (449) |.+ .+..|+.++.+. +..+.+++++.|.++++|+.+++.. ..|.+..+.. ++|+++|++| T Consensus 68 ~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~Dgl~n~~~~lG~~~~~s~y~~~~~~~~~~~~~~f~g-yql~alY~~~ 146 (862) T protein:vir:99 68 ISDSVNAKSVSGKNFAMDSAVRSAIKAITGFAMDDGGGAPVPIGAEGKQSSYAVPEALQDWYLSQGFIG-HQACALIAQH 146 (862) T ss_pred ccccccchhhhhhhhcchhhcchhhhhhhhhhhhcchhhhhhccccccccccccchhccccccccCccc-HHHHHHHHhC Confidence 221 123334443322 2345667778888888888765431 1223334444 4699999999 Q ss_pred chhHHHHhhhHHHHhcCCcEEecCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEe--cCCCc Q lcl|Aclame:pro 62 GIAHGAVEKLVGKCWQTNPEIIEGDDAD--DSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHI--RDEKD 137 (449) Q Consensus 62 ~l~r~iVd~pa~d~~r~~~~i~~~~~~~--~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i--~d~~~ 137 (449) ||+|+|||+||+||||+|++|.+..+.+ +.+....+++.+++| +++++|+++++|+|||||+++++.+ .|+.. T Consensus 147 ~larkiVd~pAeDatR~g~~I~~~~d~~e~~~e~~~~ie~~~~rL---~v~~~l~eair~~RLyGga~ililv~~~D~~~ 223 (862) T protein:vir:99 147 WLVDKACSLAGEDAIRNGWHLKSLGEGEEIDEESLEKFKAIDVEF---KVKENLIEFNRFKNVFGIRVAIFVVDSEDPDY 223 (862) T ss_pred chhhhhhhhhhHHHhhCCceEeecCcccccCHHHHHHHHHHHHHh---hHHHHHHHHHHhcccccceEEEEEecCcCchh Confidence 9999999999999999999998754433 344566677777766 7899999999999999999998887 36778 Q ss_pred ccccccccC----ceeeEEEeccc---cCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC--- Q lcl|Aclame:pro 138 WNLPATKGR----GLQKVSVSWAG---SLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS--- 207 (449) Q Consensus 138 ~~~Pl~~~~----~l~~i~v~~~~---~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~--- 207 (449) |++||++++ +++.|.+++++ ++++..+++||+||+||+|++|+|+ +.+||+||||+|.+.+ T Consensus 224 LsqPLn~e~I~kG~lkgl~vlDp~w~~p~~v~~~~~Dp~sp~yGkP~~y~I~---------g~~IH~SRliif~g~~vpd 294 (862) T protein:vir:99 224 YEKPFNPDGITPGSYRGISQIDPYWMMPMLTAESTADPSSQFFYEPEFWIIS---------GQKYHRSHLIIARGPQPAD 294 (862) T ss_pred hhcCcCcccccccceeEEEEechhhhcccccccccccccccccCCceeeeec---------CeeeccceeEEecCCCchh Confidence 999998762 34555555554 4445678899999999999999996 5689999999997754 Q ss_pred -------CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 208 -------EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINR 280 (449) Q Consensus 208 -------~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 280 (449) +||+|+++++|+.|.+++++.++++++++++.+.+++++... .+ . ..+.+.+++ .++.++++ T Consensus 295 ~lk~ay~f~G~SvLe~iyd~L~~~d~t~~saa~Ll~ka~l~v~ktd~l~-----~l----~-~ed~l~~r~-~~~~~~rd 363 (862) T protein:vir:99 295 ILKPTYIFGGIPLVQRIYERVYAAERTANEAPLLAMNKRTTAIHTDTAK-----AI----A-NEDKFIQRL-MFWVRYRD 363 (862) T ss_pred hhhccCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccceeechhHh-----hh----c-cHHHHHHHH-HHHHhccC Confidence 589999999999999999999999999999988888765322 11 1 123333333 45666666 Q ss_pred cccceeecCCCceEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccc-h-hHHHHHHHHHHHHHhhhHHHH Q lcl|Aclame:pro 281 GNDVLMTTQGATVTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSST-E-DQKYFNARCQSRRVDLSFEIE 358 (449) Q Consensus 281 ~~~~~l~~~~ed~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~-e-D~~nyyd~I~~~Qe~~~~p~~ 358 (449) +.++++++.+|+|++++++||||++++++++++|||+++||+|||||+||+|+++| + |++|||++|+++||..++|++ T Consensus 364 N~Gi~liD~eEe~e~ls~slSGL~dll~~~~q~IAaas~IP~tiLfGqspaGlnATGE~D~~nYyD~I~s~QE~~L~P~L 443 (862) T protein:vir:99 364 NHAVKVLGTDETMEQFDTSLADFDAVIMGQYQLVASIAKTPATKLLGTAPKGFNSTGEFETISYHEELESIQEHVYMPFL 443 (862) T ss_pred cceeEEecCCCceeEEecccCChHHHHHHHHHHHHhhhCCCceeecccCcccccCchHHHHHHHHHHHHHHHHHHHHHHH Confidence 67788889999999999999999999999999999999999999999999888765 4 999999999999999999999 Q ss_pred HHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHh------cCCCCCCCC Q lcl|Aclame:pro 359 DFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAA------GYDNDDEEP 432 (449) Q Consensus 359 ~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~------~~~~~~~~~ 432 (449) ++|..|++++++ .|++|+|+|+|||++|++||||+++++|+++++|+++| +++++|+|+.. ++...+++. T Consensus 444 erL~~li~~~lg-~~~d~~ieFnpL~~~sekEkAEi~kk~Aea~~~lv~sG---vispdEvR~~L~~~~~~g~~~l~ded 519 (862) T protein:vir:99 444 QRHYLISRLSLG-IQHEIDVVMEPVASMTAQQQADLNKTKAEGGKVLIDGG---VISPDEERNRIRDDKRSGYNRLTKED 519 (862) T ss_pred HHHHHHHHHhcC-CCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHhcCCcCCCCCCccc Confidence 999999988887 56789999999999999999999999999999999998 99999999864 333222111 Q ss_pred -CCCC-Ccchh------hcccccCC Q lcl|Aclame:pro 433 -LGEE-DGDEE------DKATDSAA 449 (449) Q Consensus 433 -~~~~-~~~ee------~~~~~~~a 449 (449) +.+. ..+++ ..++...| T Consensus 520 ~E~d~~~~~e~~~~~e~~g~a~~~a 544 (862) T protein:vir:99 520 AEETPGASPENLAAYQKAGAAQETA 544 (862) T ss_pred ccccCCCCcccccccccCCcccccc Confidence 0000 00000 00000000 No 5 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=100.00 E-value=6.8e-104 Score=586.19 Aligned_cols=418 Identities=13% Similarity=0.131 Sum_probs=318.3 Q ss_pred Cch--------------------hhHHHHHhhhHHHHHHHHHHHHHHHHhhcCccc-ccchhccCCcccCCHHHHHHHHH Q lcl|Aclame:pro 1 MTD--------------------KLTLAVNHALNDARMARARMGLMVPTMGLDNKR-HSAWCEYGFPELVTYENLYSLYR 59 (449) Q Consensus 1 ~~~--------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r-~~~~~~~~~~~~~~~~~l~~~Y~ 59 (449) |.. -..+|...+. -...-+.+.+...|.++.+ ..+...++++..+..+||+++|+ T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ds~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gyql~alY~ 118 (765) T protein:vir:96 43 IRGWNVEPEKAPVIRSVKDFLEPGLSVAMDSAY----GDGPTPAAKAAAGGQNPYVVPTMLQDWYNSQGFIGYQACAIIS 118 (765) T ss_pred HhhcccccccCCCCCCCCcccCcccceeccccc----cccccchHHHhhhccCccchhhHHHhhhcccCCccHHHHHHHH Confidence 111 0111111111 0011234555555555443 33455566677777778999999 Q ss_pred cCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec--CCCc Q lcl|Aclame:pro 60 RGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR--DEKD 137 (449) Q Consensus 60 ~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~--d~~~ 137 (449) +|||+|+|||+||+||||+|++|.+..+..+.+....+++.+++| +++++|+++++|+|||||+++++.++ |+.. T Consensus 119 ~~~l~rkiVd~pAeDa~R~g~~I~~~~~e~~~~~~~~l~~~~~rl---~v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~ 195 (765) T protein:vir:96 119 QHWLVDKACSMSGEDAARNGWELKSDGRKLSDEQSALIARRDMEF---RVKDNLVELNRFKNVFGVRIALFVVESDDPDY 195 (765) T ss_pred hCchhhhhhhcchHHhhcCCceeecCccccCHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhceeeEEEEEecccCcch Confidence 999999999999999999999998765555556667788888877 68999999999999999999999985 6778 Q ss_pred ccccccccC----ceeeEEEeccccCC---hhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC--- Q lcl|Aclame:pro 138 WNLPATKGR----GLQKVSVSWAGSLK---VAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS--- 207 (449) Q Consensus 138 ~~~Pl~~~~----~l~~i~v~~~~~i~---~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~--- 207 (449) |++||++++ ++++|.++++++++ +.++++||+||+||+|++|+|+ +.+|||||||+|.+.+ T Consensus 196 l~~PL~~~~I~kg~~kgl~vldp~~~~~~~v~e~~~Dp~sp~fg~P~~y~i~---------g~~IH~SRli~~~g~~lpd 266 (765) T protein:vir:96 196 YEKPFNPDGIAPGSYKGISQIDPYWAMPQLTAESTADPSAEHFYEPDFWIIS---------GKKYHRSHLVVVRGPQPPD 266 (765) T ss_pred hhccccccccccceeeEEEEechhhcccccchhccccccccccCcceeeeec---------CceeccceEEEecCCCchh Confidence 999998763 45666666555544 4678899999999999999996 4689999999997754 Q ss_pred -------CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 208 -------EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINR 280 (449) Q Consensus 208 -------~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 280 (449) +||+|+++++|++|.+++++.++++++++++.++++++++.+.. ...+++.+++. ++.++.+ T Consensus 267 ~lk~~~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~~v~k~~~~~~l----------~~~~~l~~r~~-~~~~~r~ 335 (765) T protein:vir:96 267 ILKPTYIFGGIPLTQRIYERVYAAERTANEAPLLAMSKRTSTIHVDVEKAI----------ANEDAFNARLA-FWIANRD 335 (765) T ss_pred hhccccCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccceeeechHhhh----------ccHHHHHHHHH-HHHHhcC Confidence 58999999999999999999999999999999998877643321 11234444443 4555666 Q ss_pred cccceeecCCCceEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccc-h-hHHHHHHHHHHHHHhhhHHHH Q lcl|Aclame:pro 281 GNDVLMTTQGATVTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSST-E-DQKYFNARCQSRRVDLSFEIE 358 (449) Q Consensus 281 ~~~~~l~~~~ed~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~-e-D~~nyyd~I~~~Qe~~~~p~~ 358 (449) +.++++++++|+|++++++||||++++++++++|||+++||+||||||||+|+|+| + |++|||++|+++||..++|++ T Consensus 336 n~g~~~id~ee~~e~~s~~lsgl~d~l~~~~~~iAaas~IP~t~LfGqsp~GlnATGe~D~~nYyD~I~s~Qe~~l~p~l 415 (765) T protein:vir:96 336 NHGVKVIGIDETMEQFDTNLSDFDSVIMNQYQLVAAIAKTPATKLLGTSPKGFNATGEHETISYHEELESIQEHIFDPLL 415 (765) T ss_pred CceeEEecCCcceeEEecccCCHHHHHHHHHHHHHhhhCCCeeeeccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHH Confidence 77788899999999999999999999999999999999999999999999888765 4 999999999999999889988 Q ss_pred HHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCC------CC-C Q lcl|Aclame:pro 359 DFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDND------DE-E 431 (449) Q Consensus 359 ~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~------~~-~ 431 (449) ++|..+++.. +..+.+|+|+|+|||++|++||||+++++|+++++|+++| +++++|+|+....++. ++ + T Consensus 416 e~L~~li~~s-~~i~~d~~i~FnpL~~~sekEkAei~~k~Aea~~~~~~~G---vis~dEvR~~L~~~~~~g~~~l~d~~ 491 (765) T protein:vir:96 416 ERHYLLLAKS-ESIDVQLEIVWNPVDSTTSQQQAELNNKKAATDEIYINSG---VVSPDEVRERLRDDPRSGYNRLTDDQ 491 (765) T ss_pred HHHHHHHHHh-cCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHhccccCCCCCCCccc Confidence 7777666554 3456689999999999999999999999999999999998 9999999998643331 11 1 Q ss_pred -----CCCCCCcchhhcccccCC Q lcl|Aclame:pro 432 -----PLGEEDGDEEDKATDSAA 449 (449) Q Consensus 432 -----~~~~~~~~ee~~~~~~~a 449 (449) ..+++...+.+...+..+ T Consensus 492 ~e~~~~~~pe~~~~~~~~~~~~~ 514 (765) T protein:vir:96 492 AETEPGMSPENLAELEKAGAQSA 514 (765) T ss_pred cccccCCCccccccccCCCcccc Confidence 010101000000000000 No 6 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=100.00 E-value=1.9e-103 Score=583.69 Aligned_cols=404 Identities=16% Similarity=0.154 Sum_probs=318.6 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHH-HHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMV-PTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTN 79 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~ 79 (449) |+.|-+ .|. ..+++.| .+++.|+.+++. ++...+++++|+++|++||++|+|||+||+||||+| T Consensus 5 m~~~~~-~~~----------~~D~~~~~~~~~~g~~~~~~----~~~~~~~~~~l~~~Y~~~~l~~~~Vd~~aed~~r~g 69 (435) T protein:vir:79 5 MSDKVK-AIT----------KEDGYNEIFGSKDGTFRPNA----FYMQRAAFKALSQFYEEDGMARRIVDVIPEEMVTPG 69 (435) T ss_pred cccccc-cch----------hhcchhhhhcccccccccCc----ccCCcCCHHHHHHHHhcCchhhhhhccchHHhhcCC Confidence 888833 222 2456666 455667766544 345677999999999999999999999999999999 Q ss_pred cEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccccC Q lcl|Aclame:pro 80 PEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSL 159 (449) Q Consensus 80 ~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i 159 (449) ++|.+ ++. ...+++.+++| +++++|+++++|+|+||||+|++.++|++++++||++...|++|+|++++++ T Consensus 70 ~~i~g-~~~-----~~~~~~~~~~l---~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~~g~i~~i~v~d~~~i 140 (435) T protein:vir:79 70 FKVDG-VKN-----EKSFKSRWDEL---RLNAKIIDALSWSRLFGGSAILAVVADNKMLKSPVKPGAQLEDIRVYDRYQI 140 (435) T ss_pred ceecC-CCh-----HHHHHHHHHHh---hHHHHHHHHHHhhhccccEEEEEEecCCCCcccccccCCceeeEEeechhhc Confidence 99843 221 13577777777 6899999999999999999999999999999999999888999999999999 Q ss_pred ChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----------CCCcchhH-HHHHHHHHHHHHHh Q lcl|Aclame:pro 160 KVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----------SEDAIGFL-EPAYNAFVSLEKVE 228 (449) Q Consensus 160 ~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----------~~~G~s~l-~~~~~~l~~~~~~~ 228 (449) +|..+++||+||+||+|++|+|++ ++...+++||||||++|.+. .+||.|+| +++|++|++++++. T Consensus 141 ~~~~~~~dp~sp~fg~P~~y~v~~---~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~ 217 (435) T protein:vir:79 141 TIHERETNARSVRYGEPKLYKISP---GGDIPEFFVHYSRICIIDGERVSNEKRRQNDGWGASILNKRLIEAIVDYNYCQ 217 (435) T ss_pred cchhhccCCcccccCcceEEEEec---CCCCCceEEcceeEEEecCCcchhhhccccCcccchHHHHHHHHHHHHHHHHH Confidence 999999999999999999999973 23445789999999999764 46899976 89999999999999 Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccC--hHHHHHHHHHHHHHHhccccceeec-CCCceEEeecccCChHH Q lcl|Aclame:pro 229 GGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVS--IDELQDKFNEVAGEINRGNDVLMTT-QGATVTPLVTSVADPTA 305 (449) Q Consensus 229 ~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~-~~ed~~~~~~~lsgl~d 305 (449) ++++++++++.+.+++++ ++.++.+.+ .....+++. .+....+..+.++++ ++|+|++++++||||++ T Consensus 218 ~~~~~l~~~~~~~v~~~~--------~l~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~i~~~~e~~e~~~~~lsgl~~ 288 (435) T protein:vir:79 218 ELATQLLRRKQQAVWKAR--------DLALMCDDEEGRYAARLRLA-QVDDESGVGKAIGIDATDEEYEVLNSDVSGVPE 288 (435) T ss_pred HHHHHHHHHhcCccccch--------hHHHhhcCccchHHHHHHHH-HHHHhcCCCCceeEecCCcceEEEecccCCHHH Confidence 999999999987776553 444444332 223333333 333444444545554 45779999999999999 Q ss_pred HHHHHHHHHHhhhcCCceeeeccCccccccch--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCC Q lcl|Aclame:pro 306 TYNVNLQTAAAGVDIPTRILIGNQQAERSSTE--DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDL 383 (449) Q Consensus 306 ~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e--D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL 383 (449) ++++++++|||+++||+|||||+||+|+|||| |++|||++|+++||..++|++++|..+++.+ ++|+|+|+|| T Consensus 289 ~~~~~~~~iaaa~~IP~t~L~G~s~~glnstgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~li~~s-----~d~~~~f~pL 363 (435) T protein:vir:79 289 FLQEKIDRIVALTGIHEIIIKNKNTGGVSASQNTALETFYKLIDRKRVEDYKPILEFLLPFMISE-----TEWSIEFEPL 363 (435) T ss_pred HHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCeEEeCCC Confidence 99999999999999999999999999998874 8999999999999999999988887776543 5999999999 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHh-------cCCCCCCCCCCC---CCcchhhcccccC Q lcl|Aclame:pro 384 NEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAA-------GYDNDDEEPLGE---EDGDEEDKATDSA 448 (449) Q Consensus 384 ~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~-------~~~~~~~~~~~~---~~~~ee~~~~~~~ 448 (449) |+||++||||+++++|+++++|+++| +++++|+|+.. ++........++ .+.++.....+.. T Consensus 364 ~~~sekEkAei~~~~a~a~~~~~~~g---~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~g~~~ 435 (435) T protein:vir:79 364 SVPSDKDKAEIMAKNVESVVKLKAEQ---AINLKETRDTLRSICPDLKIMDNDNIELPEPEDLDPEPGQEGGLNK 435 (435) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHhccccCCCCcccccCCccccCCCCCCCCCCCCC Confidence 99999999999999999999999998 89999998754 111111010111 0111111222222 No 7 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=100.00 E-value=4.1e-103 Score=581.92 Aligned_cols=421 Identities=12% Similarity=0.125 Sum_probs=326.4 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhh--cCccccc-chhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMG--LDNKRHS-AWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQ 77 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g--~~t~r~~-~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r 77 (449) |..... -....+.+.+++..|.++| .|+.|+. .++.+++++.+++++|+++|++||++|+|||+||+|||| T Consensus 1 ~~~~~~------a~~~~~~~~a~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~l~~lY~~~~l~r~iVd~~a~d~~r 74 (461) T protein:vir:80 1 MYSIDK------AKQAKIDSKIVNRNDFMVGHGKANSRDKLTRQTPGNGQKLDLKACENLYASNSIAMNIVDIISEDMVR 74 (461) T ss_pred Cccchh------hhhhhhhhhhhhhhHHHhhcCCcchhhhhhccccCcccccCHHHHHHHHHhCCccchhhccchHHhhc Confidence 555444 2222233444555555444 4566666 568889999999999999999999999999999999999 Q ss_pred CCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCC----cccccccccC--ceeeE Q lcl|Aclame:pro 78 TNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEK----DWNLPATKGR--GLQKV 151 (449) Q Consensus 78 ~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~----~~~~Pl~~~~--~l~~i 151 (449) +|++|.+.+ .+....+++.+++| ++|.+++++++|+|+||+|+++|.++|+. .+++||++++ ||++| T Consensus 75 ~g~~i~~~~----~~~~~~~~~~~~~l---~~~~~l~~~~~~~rl~G~a~i~i~v~d~~~~~~~~~~pl~~~~~~~~~~l 147 (461) T protein:vir:80 75 AGWSLKTDN----KEMKKNIESKWRKL---KTKDRFQKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKTIKSIPYI 147 (461) T ss_pred CCeeeecCC----HHHHHHHHHHHHHh---hHHHHHHHHHHhhcccccEEEEEEeecCCccccCccCCcccccccceeEE Confidence 999985432 33344566666666 68999999999999999999999997653 4678998874 89999 Q ss_pred EEeccccCChhhhhccccccccCCceeEEeeecccC--------CCccceEEccceeeeccCCC----CCcchhHHHHHH Q lcl|Aclame:pro 152 SVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPN--------GSSRRVDIHPDRVFILGDYS----EDAIGFLEPAYN 219 (449) Q Consensus 152 ~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~--------~~~~~~~IH~SRli~~~~~~----~~G~s~l~~~~~ 219 (449) +|+|+.++++..+++||++|+||+|++|+|...... ....+++||+||||||.+.+ .||+|+++++|+ T Consensus 148 ~~~~~~~i~~~~~~~dp~sp~fg~P~~y~i~~~~~~~~~~~~~~~~~~~~~iH~SRii~~~~~~~~~~~~G~S~le~~~~ 227 (461) T protein:vir:80 148 NTFNTQKVTQLYLNQDMFSEHFGEVEFFEVNRVSQLGEEILSGTTASTSEQIHRSRIIHEQGLRFEGETKGRSIFESLYD 227 (461) T ss_pred EeccccccchhhhcccCcCcccccceEEEEeccccccccccccccCccceEEccccEEEecCCCCCccccCcchHHHHHH Confidence 999999999999999999999999999999754321 23346899999999998755 579999999999 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeecc Q lcl|Aclame:pro 220 AFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTS 299 (449) Q Consensus 220 ~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~ 299 (449) .|++++++..+++++++++.+.+++++ .+....+.. ...+..++..++++.++++++++|+|++++++ T Consensus 228 ~l~~~~~~~~~~~~l~~~~~~~v~k~~--------~l~~~~~~~----~~~~~~~~~~~~~~~g~~~~d~~e~~e~~~~~ 295 (461) T protein:vir:80 228 IITVMDTSLWSVGQILYDFAFKVYKTD--------DIDALNKDD----KANLTAMLDFMFRTEALAIIKGDEQLTKESTN 295 (461) T ss_pred HHHHHHHHHHHHHHHHHHhCCCceecc--------hHHhhhchH----HHHHHHHHHHhcCCceEEEEcCCcceEEEecC Confidence 999999999999999999877766554 222222222 22233344566678888889999999999999 Q ss_pred cCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHhcCC----CC Q lcl|Aclame:pro 300 VADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLI-ELKIID----AV 373 (449) Q Consensus 300 lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~-~~~~~~----~~ 373 (449) |+||+++++++++.|||+++||+|+|||+|||+++|++ |++|||++|+++||..++|++++|..++ ++.++. .| T Consensus 296 lsgl~~~l~~~~~~iaa~s~iP~t~L~G~s~g~~asge~D~~~yyd~i~~~qe~~l~p~le~l~~~i~~s~~~~~~~~~p 375 (461) T protein:vir:80 296 VSGMKDLLDYGWDYLAGAVRMPKTVLKGQEAGTLTGAQYDVMNYYARVSSIQENRLRPQLEYLTRLLMWASDDCGPSIDP 375 (461) T ss_pred cCCHHHHHHHHHHHHhhhhcCCeeeeecccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCc Confidence 99999999999999999999999999999999988765 9999999999999998888877666555 444331 12 Q ss_pred --CCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHh----cCCCCCCCCCCCCCcchhh----- Q lcl|Aclame:pro 374 --AKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAA----GYDNDDEEPLGEEDGDEED----- 442 (449) Q Consensus 374 --~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~----~~~~~~~~~~~~~~~~ee~----- 442 (449) .+|+|+|+|||++|+||+||+++++|+++++|+++| +++++|+|+.. ++++.+..+..+.+.++-. T Consensus 376 ~~~~~~i~f~~L~~~s~kekAe~~~~~a~a~~~~~~~g---~is~~e~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (461) T protein:vir:80 376 DSFEWAIEFNPLWNLDSKTDAEVRKLTAEADQIYIVNG---VLDPDEVKETRFGRFGLENSSKFSGDSAEIDKLAKLVYD 452 (461) T ss_pred cccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHhcCCCCCccCCCCCchhhhhhhhccc Confidence 489999999999999999999999999999999998 99999999754 2344322221111111100 Q ss_pred cccccCC Q lcl|Aclame:pro 443 KATDSAA 449 (449) Q Consensus 443 ~~~~~~a 449 (449) ...+..+ T Consensus 453 ~~~~e~~ 459 (461) T protein:vir:80 453 AYAKKNA 459 (461) T ss_pred cccccCC Confidence 1111111 No 8 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=100.00 E-value=2.4e-103 Score=583.14 Aligned_cols=426 Identities=13% Similarity=0.072 Sum_probs=329.3 Q ss_pred CchhhHHHHHhhhHHHH-HHHHHHHHHHH---HhhcCcccccchh-ccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDAR-MARARMGLMVP---TMGLDNKRHSAWC-EYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKC 75 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~-~~~~~~~~~~~---~~g~~t~r~~~~~-~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~ 75 (449) --.++.+|++|+++... +.+.++++.|. ..|+||.|++++. .|+++..++..+++++|++||++|+|||+||+|| T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~r~~Vd~~aed~ 108 (532) T protein:vir:94 29 THTSLGLATAHEIDPTAYSPYERNAAQNAMAMDYGLQTGRNGRNALSFVEATSWPGFPTLALLAQLPEYRTMHETPADEC 108 (532) T ss_pred hhhhhhhhhhhhhcccccccccccccccccccccccCcccccccccccccccccchHHHHHHHHcCchhhhhhccchHHH Confidence 23445567776664322 12333444443 3488999998866 4455777888899999999999999999999999 Q ss_pred hcCCcEEecCCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC---CCccccccccc-----C Q lcl|Aclame:pro 76 WQTNPEIIEGDDAD-DSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD---EKDWNLPATKG-----R 146 (449) Q Consensus 76 ~r~~~~i~~~~~~~-~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d---~~~~~~Pl~~~-----~ 146 (449) ||+|++|++..+.+ +.+....+++++++| ++|++|+++++|+||||||+++|.++. ...++.|+..+ + T Consensus 109 ~r~~~~i~~~~~~~~~~~~~~~i~~~~~~l---~v~~~l~~a~~~~rlyG~a~i~i~v~~~~~~~~~~~p~~l~~~~I~~ 185 (532) T protein:vir:94 109 VRAWGKITCSSKDELAADKATRITQKLEQY---NVRTLVRTVVIHDQAYGGAHVFPHLKMDGDSVPADAPLLLSPSFVQR 185 (532) T ss_pred hhCCceEeeCCccccchHHHHHHHHHHHhh---hHHHHHHHHHHhhhcccceEEEEEeccCCcccccccccccccccccc Confidence 99999998765443 455667788888877 689999999999999999999999952 12355565432 2 Q ss_pred -ceeeEEEeccccCChhhhh-ccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC----------CCcchhH Q lcl|Aclame:pro 147 -GLQKVSVSWAGSLKVAEWD-TGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS----------EDAIGFL 214 (449) Q Consensus 147 -~l~~i~v~~~~~i~~~~~~-~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~----------~~G~s~l 214 (449) +++.|.|+++++++|..++ .||+||+||+|++|+|. .+++||||||+||.+.+ +||+|++ T Consensus 186 g~~~~l~vld~~~v~p~~~~~~dp~sp~fg~P~~y~v~--------~g~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svl 257 (532) T protein:vir:94 186 GCLIGFATIEPMWLSPNAYNATDPTLPSFYKPDSWIAT--------SGKKIHSSRIHTVVGRPVGDMLKAAYSFRGVSIS 257 (532) T ss_pred ceeeEEEeechheecccccccccccccccCCceeEEEc--------cCeeeccceEEEecCCCchhhhccccccccccHH Confidence 5789999999999998876 69999999999999985 25789999999997653 5899999 Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecC-CCce Q lcl|Aclame:pro 215 EPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQ-GATV 293 (449) Q Consensus 215 ~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ed~ 293 (449) +++|++|++++++.++++++++++.+.++++ ++ .+.+..+..+...+...++.++.++.+++++++ +|+| T Consensus 258 q~~~~~l~~~~~t~~~~~~l~~~~~~~v~k~------~~---a~~ls~~~~~~~~~r~~~~~~~~~n~g~~~id~~~e~~ 328 (532) T protein:vir:94 258 QLAMPYVDNWLRTRQSVSDTVKQFSMTNLAT------DM---AQLLAPGGAQSLDARLQLFNLYRDNRNIGALDKGTEEI 328 (532) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceeee------ch---HHhhcchhHHHHHHHHHHHHhhcCCccceEEcCCCcee Confidence 9999999999999999999999987666543 22 333222223333333344555666667788876 5789 Q ss_pred EEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch--hHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcC Q lcl|Aclame:pro 294 TPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE--DQKYFNARCQSRRVDLSFEIEDFCD-KLIELKII 370 (449) Q Consensus 294 ~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e--D~~nyyd~I~~~Qe~~~~p~~~~l~-~l~~~~~~ 370 (449) ++++++||||++++++++++|||+++||+|||||+||+|+|||| |++|||++|+++||..++|++++|. +|+++++| T Consensus 329 e~~~~~lsgl~~~l~~~~~~iAaa~~IP~t~LfG~sp~GlnstGe~D~~~yyd~I~s~Qe~~l~p~le~l~~~l~~s~~g 408 (532) T protein:vir:94 329 QQTNTPLSGLDSLQAQSQEQMAAVSHIPLVKLLGITPNGLNASSDGEIRVWYDFIAGYQATNLTPLMEWIIDLIQLSEYG 408 (532) T ss_pred EEEecccCCHHHHHHHHHHHHHhHhCCCeeeeecCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 99999999999999999999999999999999999999998864 8999999999999998888776655 55567889 Q ss_pred CCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCC----CCCCCCCCcchhhcccc Q lcl|Aclame:pro 371 DAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDD----EEPLGEEDGDEEDKATD 446 (449) Q Consensus 371 ~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~----~~~~~~~~~~ee~~~~~ 446 (449) .++++|+|+|+|||++|+||+||+++++|+++++|+++| +++++|+|+..+.++.. ..+..++.++++....+ T Consensus 409 ~~~~d~~~~f~pL~~~s~kEkAei~~~~a~a~~~~~~~G---vi~~~Evr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (532) T protein:vir:94 409 QIDPGLAWEWSPLMELDDKELAEVRQLNASTDSTLMELG---VIDAKMVQQRLAADPTSGYAGALGERDELDDVEEIAKQ 485 (532) T ss_pred CCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHhcCCccccccccccccccccccchhhh Confidence 899999999999999999999999999999999999998 99999999987665532 11111100000000000 Q ss_pred ---------cCC Q lcl|Aclame:pro 447 ---------SAA 449 (449) Q Consensus 447 ---------~~a 449 (449) ..+ T Consensus 486 ~~~~~~~~~~~~ 497 (532) T protein:vir:94 486 LMAAALNPPATA 497 (532) T ss_pred hcccccCCCCCC Confidence 000 No 9 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=100.00 E-value=7.3e-103 Score=580.53 Aligned_cols=399 Identities=14% Similarity=0.080 Sum_probs=306.7 Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCCh Q lcl|Aclame:pro 9 VNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDA 88 (449) Q Consensus 9 v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~ 88 (449) |+ + +..+++.|...| ++... . ++........+++++|++||++|||||+||+||||+|++|.+. + T Consensus 1 ~~------~--~~~d~~~~~~~~-~~~~~--~--~~~~~~~~~~~l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~g~-~- 65 (427) T protein:vir:10 1 MK------I--VKHDGYNDIFNG-GADGS--P--KPFFMSDASYHVGSFYNDNATAKRIVDVIPEEMVTAGFKMSGV-K- 65 (427) T ss_pred CC------c--cccchHHHHhhc-CCCCc--c--cCccccCchHHHHHHHHcCchhhhhhccchHHhhcCCccccCc-c- Confidence 11 2 224555555433 32211 1 1111233445899999999999999999999999999998542 2 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccc Q lcl|Aclame:pro 89 DDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGI 168 (449) Q Consensus 89 ~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp 168 (449) + ...+++++++| ++|++|+++++|+||||||++++.++|++.+++|+....+|++|+|+|+++++|..++.|| T Consensus 66 ~----~~~~~~~~~~l---~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~~g~l~~l~v~d~~~~~~~~~~~dp 138 (427) T protein:vir:10 66 D----EKEFKSLWDSY---KLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFAITVEKRVTNA 138 (427) T ss_pred H----HHHHHHHHHHh---hHHHHHHHHHHhccccceeEEEEEecCCCccccccCCCcceeEEEEechhcccccccccCc Confidence 1 13477777766 7899999999999999999999999999999999998889999999999999999999999 Q ss_pred cccccCCceeEEeeecccCCCccceEEccceeeeccCCC----------CCcchhH-HHHHHHHHHHHHHhhHHHHHHHH Q lcl|Aclame:pro 169 NSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS----------EDAIGFL-EPAYNAFVSLEKVEGGSGESFLK 237 (449) Q Consensus 169 ~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~----------~~G~s~l-~~~~~~l~~~~~~~~~~a~l~~~ 237 (449) ++|+||+|++|+|+. +++.++++||||||++|.+.+ +||.|+| +++|++|.+++++.+++++++++ T Consensus 139 ~s~~fg~P~~y~v~~---~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~k 215 (427) T protein:vir:10 139 RSPRYGEPEIYKVSP---GDNMQPYLIHHSRVFIADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQILRR 215 (427) T ss_pred cccccCcceEEEEec---CCCCcceEEccccEEEecCCCchhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHH Confidence 999999999999973 234456899999999997653 6899987 57999999999999999999999 Q ss_pred HHhhhhhhhhhhhhhHHHHHhhhccC--hHHHHHHHHHHHHHHhccccceeec-CCCceEEeecccCChHHHHHHHHHHH Q lcl|Aclame:pro 238 NAARQLNVNFEKEIDFTNLASLYGVS--IDELQDKFNEVAGEINRGNDVLMTT-QGATVTPLVTSVADPTATYNVNLQTA 314 (449) Q Consensus 238 ~~~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~-~~ed~~~~~~~lsgl~d~~~~~~~~i 314 (449) +.+++++++ ++.++++.+ ..++.+++. .+.+..+..+.++++ ++|+|++++++||||++++++++++| T Consensus 216 ~~~~v~k~~--------~l~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~l~~~~e~~e~~~~~lsgl~~~~~~~~~~i 286 (427) T protein:vir:10 216 KQQAVWKVK--------GLAEMCDDDDAQYAARLRLA-QVDDNSGVGRAIGIDAETEEYDVLNSDISGVPEFLSSKMDRI 286 (427) T ss_pred hccccccch--------hHHHHhcCccchHHHHHHHH-HHHHhcCcccceeeecCCCceeEEecccCChHHHHHHHHHHH Confidence 988877554 444443332 223344443 333344444444444 56889999999999999999999999 Q ss_pred HhhhcCCceeeeccCccccccch--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHH Q lcl|Aclame:pro 315 AAGVDIPTRILIGNQQAERSSTE--DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKL 392 (449) Q Consensus 315 aaas~IP~t~L~Gqs~gg~~s~e--D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~A 392 (449) ||+++||+|||||+||+|+|||| |++|||++|+++||..++|++++|..+++.+ ++|+|+|+|||+||++||| T Consensus 287 aaa~~IP~t~L~G~sp~Glnstgd~D~~nyyd~i~~~Qe~~l~p~l~~l~~~i~~s-----~~~~~~f~pL~~~s~kEka 361 (427) T protein:vir:10 287 VSLSGIHEIIIKNKNVGGVSASQNTALETFYKLVDRKREEDYRPLLEFLLPFIVDE-----EEWSIEFEPLSVPSKKEES 361 (427) T ss_pred HhhhCCCeeeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEeCCCCCCCHHHHH Confidence 99999999999999999998874 8999999999999999999888887777644 5899999999999999999 Q ss_pred HHHHHHHHHHHHHHHcCCccccCHHHHHHHh----cCCCCCCCCCCCCCcchhhcccccCC Q lcl|Aclame:pro 393 TNAKTMGEINQTMLGSGDNPAFSREEIRTAA----GYDNDDEEPLGEEDGDEEDKATDSAA 449 (449) Q Consensus 393 ei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~----~~~~~~~~~~~~~~~~ee~~~~~~~a 449 (449) |+++++|+++++|+++| +++++|+|+.. +.++..+......++.++..+.++.+ T Consensus 362 ei~~~~a~a~~~~~~~g---vi~~~e~r~~L~~~~~~~~~~~~~~~~~e~~~~~~e~~p~~ 419 (427) T protein:vir:10 362 EITKNNVESVTKAITEQ---IIDLEEARDTLRSIAPEFKLKDGNNINIREPEETTEPEPGL 419 (427) T ss_pred HHHHHHHHHHHHHHhcC---CCCHHHHHHHHHhhhccccCCCCccccccccchhcCCCCCC Confidence 99999999999999998 88999888754 33332110000000111111112222 No 10 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=100.00 E-value=3.3e-102 Score=576.93 Aligned_cols=422 Identities=12% Similarity=0.083 Sum_probs=325.5 Q ss_pred CchhhHHHHHh-hhHHH--HHHH--HHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNH-ALNDA--RMAR--ARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKC 75 (449) Q Consensus 1 ~~~~~~~~v~~-~~~~~--~~~~--~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~ 75 (449) |.-+-.-.+.. ..+.+ .+++ ..+.+.+.+++.++.++++++.++|+..++.++++++|++||++|+|||+||+|| T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~r~iVd~~A~d~ 127 (537) T protein:vir:10 48 MAIRDHAIAMMPKVDGSHPDMAMDGLDVEGGTFSAYANPNLSEGLVLWYAQQAFIGHQMCALIATHWLVNKACSQMPRDA 127 (537) T ss_pred CCCCCccCcccccccccccchhccccccchhhhhhhccccccchhhhhccccCCccHHHHHHHHhCchhhhhhhhhhHHh Confidence 11111100000 00111 1122 2334566778888999999999999988888899999999999999999999999 Q ss_pred hcCCcEEecCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec--CCCcccccccccC----ce Q lcl|Aclame:pro 76 WQTNPEIIEGDDA-DDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR--DEKDWNLPATKGR----GL 148 (449) Q Consensus 76 ~r~~~~i~~~~~~-~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~--d~~~~~~Pl~~~~----~l 148 (449) ||+|++|.+.++. .+.+....|++++++| +++++|+++++|+||||||+++|.++ |+..+++||++++ ++ T Consensus 128 ~r~~~~i~~~~~~~~~~~~~~~l~~~~~~l---~~~~~l~~a~~~~rlyG~~~i~i~v~~~D~~~~~~Pl~~~~i~kg~~ 204 (537) T protein:vir:10 128 MRKGYKIISDDGNELDPKDAKFIDRYDRAF---NIKKHAIQFVRKGRIFGIRIALFKVDSPDPYYYEKPFNIDGVMPGAY 204 (537) T ss_pred hcCCceeecCCcccccHHHHHHHHHHHHHh---hHHHHHHHHHHhcccccceEEEEeecCcCCcccccccccccccccce Confidence 9999999775433 2345667788888877 68999999999999999999999985 7778999998863 57 Q ss_pred eeEEEeccccCCh---hhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC----------CCcchhHH Q lcl|Aclame:pro 149 QKVSVSWAGSLKV---AEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS----------EDAIGFLE 215 (449) Q Consensus 149 ~~i~v~~~~~i~~---~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~----------~~G~s~l~ 215 (449) ++|.|++++++++ ..+..||+||+||+|++|+|+ +++||||||+||.+.+ +||+|+++ T Consensus 205 k~l~vidp~~~~~~~~~~~~~dp~sp~fg~P~~y~v~---------g~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq 275 (537) T protein:vir:10 205 KGIVQIDPYWCAPLLDAQASSNPVSMHFYEPTYWLIN---------GKKYHRSHLAIYINDEVVDFLKPSYIYGGVPLPQ 275 (537) T ss_pred eEEEEechhhcccccchhhhccCCccccCCceeeeec---------CeEecceeEEEecCCCCchhhhcccCcccccHHH Confidence 8888888887776 456789999999999999995 5789999999997653 68999999 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCC-CceE Q lcl|Aclame:pro 216 PAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQG-ATVT 294 (449) Q Consensus 216 ~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-ed~~ 294 (449) ++|++|++++++.++++++++++.+++++++..+ .+ . +.+.+ .+...++.+++++.++++++++ |+|+ T Consensus 276 ~~~~~l~~~~~t~~~~~~l~~~~~~~v~k~~~~~-----~l----~-~~~~~-~~r~~~~~~~r~n~g~~~id~e~e~~e 344 (537) T protein:vir:10 276 QIMERVYAAERTANEGPMLAMTKRQTVLKVDAAQ-----VL----A-NKQQF-DETMSWWTATRDNYQVRVVDKDNEDVV 344 (537) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceeeechHH-----hh----c-CHHHH-HHHHHHHHhhcCCcceeEecCCCceeE Confidence 9999999999999999999999999988776422 11 1 12233 3333355566677778888875 8999 Q ss_pred EeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 295 PLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE--DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA 372 (449) Q Consensus 295 ~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e--D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~ 372 (449) +++++|+||++++++++++|||+++||+|||||+||+|+|+|| |++|||++|+++||. ++|+++++..|++...+.. T Consensus 345 ~~~~~lsgl~~~l~~~~~~iAa~~~IP~t~L~G~sp~GlnatGe~D~~~yyd~I~~~Qe~-l~p~l~~l~~ll~~~~~~~ 423 (537) T protein:vir:10 345 QIDTTLNDLDKVIMNQYQLVCAIARTPAPKMLGTVPTGFNSTGDYEEASYHEECESTQDD-MRPLIDRHHQLVCRSHLRK 423 (537) T ss_pred EEeccCCCHHHHHHHHHHHHHhhhCCCceeeccCCccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCC Confidence 9999999999999999999999999999999999999998754 999999999999996 5777776666555444445 Q ss_pred CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC------CCC--CCCC--cchhh Q lcl|Aclame:pro 373 VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE------EPL--GEED--GDEED 442 (449) Q Consensus 373 ~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~------~~~--~~~~--~~ee~ 442 (449) +.+|+|+|+|||++|++||||+++++|+++++|+++| +++++|+|+..+.++... ... +.++ .+++. T Consensus 424 ~~~~~i~f~pL~~~s~kEkAei~~~~a~a~~~~~~~G---~i~~~Evr~~L~~~~~~g~~~l~~~~~~ed~e~~~~~~~~ 500 (537) T protein:vir:10 424 RIRVKVEFPPMDAPKESERADTFLKKMQAAKLAFEMG---AVDGVDVNEYLRMDPTLGFTSITPAMRPTDAEDIDVDDEG 500 (537) T ss_pred CcceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHhccCccccccccCCCChhhhhcccCCccC Confidence 7799999999999999999999999999999999998 999999999876544211 000 0000 00000 Q ss_pred cccccCC Q lcl|Aclame:pro 443 KATDSAA 449 (449) Q Consensus 443 ~~~~~~a 449 (449) ...+... T Consensus 501 ~~~~~~~ 507 (537) T protein:vir:10 501 KPVRIIE 507 (537) T ss_pred CcCCCCC Confidence 0000000 No 11 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=100.00 E-value=6.2e-98 Score=553.52 Aligned_cols=416 Identities=12% Similarity=0.108 Sum_probs=315.3 Q ss_pred Cch-----------------hhHHHHHhh----h---HHHHHHHHHHHHHHHHhhcCcccccchhccCC-cccCCHHHHH Q lcl|Aclame:pro 1 MTD-----------------KLTLAVNHA----L---NDARMARARMGLMVPTMGLDNKRHSAWCEYGF-PELVTYENLY 55 (449) Q Consensus 1 ~~~-----------------~~~~~v~~~----~---~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~-~~~~~~~~l~ 55 (449) |-+ .|+++-++- + +..+..+..++| .++.++.+ .|.+ .-++.|.-|. T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l--~~~~~~~F~Gy~~la 117 (695) T protein:vir:78 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDF------NGTSMDAL--SFVTSSGFPGFPTLV 117 (695) T ss_pred hcccccccccccccccCCCcccccceeceeccccCCccccchhhhhhcc------cccccccc--hhhhccCcchHHHHH Confidence 222 223222221 1 222222222222 12333333 1222 2455666565 Q ss_pred HHHHcCchhHHHHhhhHHHHhcCCcEEecCCChh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 56 SLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDAD----------------DSEDETSWEKKSKQVFTNRLWRSFAEADRR 119 (449) Q Consensus 56 ~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~----------------~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~ 119 (449) .+ .+.|..|+++++++++|+|+|++++++.+++ +.+..+.+++++++| ++|.++.++++| T Consensus 118 ~l-aQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erL---~V~~~l~eaik~ 193 (695) T protein:vir:78 118 LL-AQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERL---RIRDAVRTTVIH 193 (695) T ss_pred HH-hhccchhhHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHH---HHHHHHHHHHHh Confidence 55 6889999999999999999999987553332 225556677766666 799999999999 Q ss_pred ccccccEEEEEEec-CCCcccccc--ccc---C-ceeeEEEeccccCChhhhhc-cccccccCCceeEEeeecccCCCcc Q lcl|Aclame:pro 120 RLVGRYAGILLHIR-DEKDWNLPA--TKG---R-GLQKVSVSWAGSLKVAEWDT-GINSKTYGQPKLWKYTERLPNGSSR 191 (449) Q Consensus 120 ~rl~Gga~i~i~i~-d~~~~~~Pl--~~~---~-~l~~i~v~~~~~i~~~~~~~-Dp~s~~yg~P~~y~i~~~~~~~~~~ 191 (449) +|||||++++|.|+ |++.+++|| ++. + +++.|.|+++++++|..++. ||++|+||+|++|+|. T Consensus 194 aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~--------- 264 (695) T protein:vir:78 194 DQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--------- 264 (695) T ss_pred hccccceEEEEEeccCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEEEe--------- Confidence 99999999999994 456699999 332 3 59999999999999998885 9999999999999996 Q ss_pred ceEEccceeeeccCCC----------CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhc Q lcl|Aclame:pro 192 RVDIHPDRVFILGDYS----------EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYG 261 (449) Q Consensus 192 ~~~IH~SRli~~~~~~----------~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~ 261 (449) +.+||+|||++|.+.+ +||+|+.+.+|++|.+++++..+++++++++.+.++++ ++++.+. T Consensus 265 G~kIH~SRL~~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~lk~---------dla~~L~ 335 (695) T protein:vir:78 265 GTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILM---------DLAQALM 335 (695) T ss_pred ceEEeeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHH---------HHHHhhc Confidence 5689999999998754 68999999999999999999999999998776665532 3555544 Q ss_pred cChHHHHHHHHHHHHHHhccccceeecC-CCceEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch--h Q lcl|Aclame:pro 262 VSIDELQDKFNEVAGEINRGNDVLMTTQ-GATVTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE--D 338 (449) Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ed~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e--D 338 (449) .+.+....++.+++.+++++.+++++|+ +|||++++++||||++++++|+++|||+++||+||||||||+|+|+|| | T Consensus 336 ~g~~~~l~~R~eli~~~Rsn~G~~llDk~~Eefeq~stslSGLddVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D 415 (695) T protein:vir:78 336 PGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGE 415 (695) T ss_pred ChhHHHHHHHHHHHHHhcCccceEEEecCCcceEEEecccCCHHHHHHHHHHHHHhhhcCchhhhhccCCccccccchhh Confidence 4444444445567888888999888984 789999999999999999999999999999999999999999998765 8 Q ss_pred HHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHH Q lcl|Aclame:pro 339 QKYFNARCQSRRVDLSFEIE-DFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSRE 417 (449) Q Consensus 339 ~~nyyd~I~~~Qe~~~~p~~-~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~ 417 (449) ++||||+|+++||..++|.+ +++++|+++.+|..|++|+|+|+||||||++|+|||++|+|+++++|+++| +|+++ T Consensus 416 ~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idpdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~g---vI~~~ 492 (695) T protein:vir:78 416 IRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQ---VIRPD 492 (695) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhc---CCCHH Confidence 99999999999998777755 566677888899998999999999999999999999999999999999998 99999 Q ss_pred HHHHHhcCCCC-------CCCCCCCCCcc-----------------hhhcccccCC Q lcl|Aclame:pro 418 EIRTAAGYDND-------DEEPLGEEDGD-----------------EEDKATDSAA 449 (449) Q Consensus 418 e~r~~~~~~~~-------~~~~~~~~~~~-----------------ee~~~~~~~a 449 (449) |+|+....++. +.+..+..+.+ +......+.| T Consensus 493 evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (695) T protein:vir:78 493 QVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARA 548 (695) T ss_pred HHHHHHhcCCCcccccccccccCCCcCccchhhhhHhhhcCcccccccCCCCCCCC Confidence 99988544332 11111111111 1111122222 No 12 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=100.00 E-value=6.7e-98 Score=553.31 Aligned_cols=416 Identities=12% Similarity=0.109 Sum_probs=315.3 Q ss_pred CchhhHHHHHhhh-------HHHHHHHHHHHHHHHHhhcCcccccchhccCC-cccCCHHHHHHHHHcCchhHHHHhhhH Q lcl|Aclame:pro 1 MTDKLTLAVNHAL-------NDARMARARMGLMVPTMGLDNKRHSAWCEYGF-PELVTYENLYSLYRRGGIAHGAVEKLV 72 (449) Q Consensus 1 ~~~~~~~~v~~~~-------~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~-~~~~~~~~l~~~Y~~~~l~r~iVd~pa 72 (449) =+-.|+|+-++.+ +..+.....++| .++..+.+ .|.+ .-++.|.-|..+ .+.|..|+++++++ T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l--~~~~~~~F~Gy~~la~l-aQ~~eyr~~~~~ia 132 (694) T protein:vir:10 62 PSPSLRLARQFEVDVSNYTPRERRAASYALDF------NGTSMDAL--SFVTSSGFPGFPTLVLL-AQLPEYRAMHEVLA 132 (694) T ss_pred CCcchhhhhhccccccCCCccccchhhhhhcc------Ccccccch--hhhhccCcchHHHHHHH-hhccchhhHHHHHH Confidence 1222333333322 111211212222 23333333 1222 245666656555 68899999999999 Q ss_pred HHHhcCCcEEecCCChh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CC Q lcl|Aclame:pro 73 GKCWQTNPEIIEGDDAD----------------DSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DE 135 (449) Q Consensus 73 ~d~~r~~~~i~~~~~~~----------------~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~ 135 (449) ++|+|+|++++++.+++ +.+..+.+++++++| ++|.++.++++|+|||||++++|.|+ |+ T Consensus 133 ~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl---~V~~~l~eaik~aRlfGGa~~~i~I~gdd 209 (694) T protein:vir:10 133 DECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERL---RIRDAVRTTVIHDQAFGRAHPYFKIKGDD 209 (694) T ss_pred HHhhcccceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHH---HHHHHHHHHHHhhccccceEEEEEeecCc Confidence 99999999987553332 225556677766666 79999999999999999999999884 45 Q ss_pred Ccccccc--ccc---C-ceeeEEEeccccCChhhhhc-cccccccCCceeEEeeecccCCCccceEEccceeeeccCCC- Q lcl|Aclame:pro 136 KDWNLPA--TKG---R-GLQKVSVSWAGSLKVAEWDT-GINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS- 207 (449) Q Consensus 136 ~~~~~Pl--~~~---~-~l~~i~v~~~~~i~~~~~~~-Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~- 207 (449) +.+++|| ++. + +++.|.|+++++++|..++. ||++|+||+|++|+|. +.+||+|||++|.+.+ T Consensus 210 ~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~---------G~~IH~SRL~~f~g~pl 280 (694) T protein:vir:10 210 QIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---------GTEVHATRLHTIVSRPV 280 (694) T ss_pred cccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEEEe---------ceEEeeeeEEEecCCCc Confidence 6699999 332 3 59999999999999998885 9999999999999996 5689999999998754 Q ss_pred ---------CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHH Q lcl|Aclame:pro 208 ---------EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEI 278 (449) Q Consensus 208 ---------~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 278 (449) +||+|+.+.+|++|.+++++..+++++++++++.++++ ++++.+..+.+....++.+++.++ T Consensus 281 Pd~LKp~y~~~G~Sv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~lk~---------dla~~L~~g~~~~l~~R~eli~~~ 351 (694) T protein:vir:10 281 GDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILM---------DLAQALMPGANVDLSMRAELINRY 351 (694) T ss_pred hhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHH---------HHHHhhcChhHHHHHHHHHHHHHh Confidence 68999999999999999999999999998876665532 355554444444444455678888 Q ss_pred hccccceeecC-CCceEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch--hHHHHHHHHHHHHHhhhH Q lcl|Aclame:pro 279 NRGNDVLMTTQ-GATVTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE--DQKYFNARCQSRRVDLSF 355 (449) Q Consensus 279 ~~~~~~~l~~~-~ed~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e--D~~nyyd~I~~~Qe~~~~ 355 (449) +++.+++++|+ +|+|++++++||||++++++|+++|||+++||+||||||||+|+|+|| |++||||+|+++||..++ T Consensus 352 Rsn~G~~llDk~~Eefeq~stslSGLddVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~ 431 (694) T protein:vir:10 352 RDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQ 431 (694) T ss_pred cCccceEEEecCCcceEEEecccCCHHHHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHHHHHHHHH Confidence 88998888984 789999999999999999999999999999999999999999998765 899999999999998777 Q ss_pred HHH-HHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCC------ Q lcl|Aclame:pro 356 EIE-DFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDND------ 428 (449) Q Consensus 356 p~~-~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~------ 428 (449) |.+ +++++|+++.+|..|++|+|+|+|||+||++|+|||++|+|+++++|+++| +|+++|+|+....++. T Consensus 432 p~L~rl~~ii~rS~~G~idp~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~g---vI~~~evr~rL~~d~~s~Y~~~ 508 (694) T protein:vir:10 432 QLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQ---VIRPDQVAARLNTEPDGPYAGK 508 (694) T ss_pred HHHHHHHHHHHHHhcCCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhc---CCCHHHHHHHHhcCCCcccccc Confidence 755 566677888899998999999999999999999999999999999999998 9999999988544332 Q ss_pred -CCCCCCCCCcch-----------------hhcccccCC Q lcl|Aclame:pro 429 -DEEPLGEEDGDE-----------------EDKATDSAA 449 (449) Q Consensus 429 -~~~~~~~~~~~e-----------------e~~~~~~~a 449 (449) +.+..+..+.++ ......+.| T Consensus 509 ~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (694) T protein:vir:10 509 LDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARA 547 (694) T ss_pred cccccCCCcCccchhhhhHhhhcCcccccccCCCCcccc Confidence 111111111111 111111111 No 13 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=100.00 E-value=5.5e-98 Score=553.80 Aligned_cols=416 Identities=12% Similarity=0.105 Sum_probs=316.2 Q ss_pred CchhhHHHHHhh----h---HHHHHHHHHHHHHHHHhhcCcccccchhccCC-cccCCHHHHHHHHHcCchhHHHHhhhH Q lcl|Aclame:pro 1 MTDKLTLAVNHA----L---NDARMARARMGLMVPTMGLDNKRHSAWCEYGF-PELVTYENLYSLYRRGGIAHGAVEKLV 72 (449) Q Consensus 1 ~~~~~~~~v~~~----~---~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~-~~~~~~~~l~~~Y~~~~l~r~iVd~pa 72 (449) =+-.|+|+-++- + +..+..+..++| .++.++.+ .|.+ .-++.|.-|..+ .+.|..|+++++++ T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l--~~~~~~~F~Gy~~la~l-aQ~~eyr~~~~~ia 133 (695) T protein:vir:36 63 PSPSLRLARQFEVDVSNYTPRERRAASYALDF------NGTSMDAL--SFVTSSGFPGFPTLVLL-AQLPEYRAMHEVLA 133 (695) T ss_pred CCcccccceeceecccccCccccchhhhhhcc------cccccccc--hhhhccCcchHHHHHHH-hhccchhhHHHHHH Confidence 222333332221 1 222222222222 22333333 1222 245666656555 68899999999999 Q ss_pred HHHhcCCcEEecCCChh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CC Q lcl|Aclame:pro 73 GKCWQTNPEIIEGDDAD----------------DSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DE 135 (449) Q Consensus 73 ~d~~r~~~~i~~~~~~~----------------~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~ 135 (449) ++|+|+|++++++.+++ +.+..+.++.++++| ++|.++.++++|+|||||++++|.|+ |+ T Consensus 134 ~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqik~L~~e~erL---~V~~~l~eaik~aRlfGGa~~~i~i~gdd 210 (695) T protein:vir:36 134 DECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERL---RIRDAVRTTVIHDQAFGRAHPYFKIKGDD 210 (695) T ss_pred HHhhcccceecccchhhhhhccccccccccccCchHHHHHHHHHHHHH---HHHHHHHHHHHhhccccceEEEEEeccCc Confidence 99999999986553322 225566677776666 79999999999999999999999994 45 Q ss_pred Ccccccc--ccc---C-ceeeEEEeccccCChhhhhc-cccccccCCceeEEeeecccCCCccceEEccceeeeccCCC- Q lcl|Aclame:pro 136 KDWNLPA--TKG---R-GLQKVSVSWAGSLKVAEWDT-GINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS- 207 (449) Q Consensus 136 ~~~~~Pl--~~~---~-~l~~i~v~~~~~i~~~~~~~-Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~- 207 (449) +.+++|| ++. + +++.|.|+++++++|..++. ||++|+||+|++|+|. +.+||+|||++|.+.+ T Consensus 211 ~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~---------G~kIH~SRL~~f~g~pl 281 (695) T protein:vir:36 211 QIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---------GTEVHATRLHTIVSRPV 281 (695) T ss_pred cccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEEEe---------ceEEeeeeEEEecCCCc Confidence 6699999 332 3 59999999999999998885 9999999999999996 5689999999998754 Q ss_pred ---------CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHH Q lcl|Aclame:pro 208 ---------EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEI 278 (449) Q Consensus 208 ---------~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 278 (449) +||+|+.+.+|++|.+++++..++++++++..+.++++ ++++.+..+.+....++.+++.++ T Consensus 282 Pd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~lk~---------dla~aL~~g~~~~l~~R~eli~~~ 352 (695) T protein:vir:36 282 GDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILM---------DLAQALMPGANVDLSMRAELINRY 352 (695) T ss_pred hhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHH---------HHHHhhcChhHHHHHHHHHHHHHh Confidence 68999999999999999999999999998776665532 355555455554444455678888 Q ss_pred hccccceeecC-CCceEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch--hHHHHHHHHHHHHHhhhH Q lcl|Aclame:pro 279 NRGNDVLMTTQ-GATVTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE--DQKYFNARCQSRRVDLSF 355 (449) Q Consensus 279 ~~~~~~~l~~~-~ed~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e--D~~nyyd~I~~~Qe~~~~ 355 (449) +++.+++++|+ +|||++++++||||++++++|+++|||+++||+||||||||+|+|+|| |++||||+|+++||..++ T Consensus 353 Rsn~G~~llDk~~Eefeq~stslSGLddVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~ 432 (695) T protein:vir:36 353 RDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQ 432 (695) T ss_pred cCccceEEEecCCcceEEEecccCCHHHHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHHHHHHHHH Confidence 88999888984 789999999999999999999999999999999999999999998765 899999999999998777 Q ss_pred HHH-HHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCC------ Q lcl|Aclame:pro 356 EIE-DFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDND------ 428 (449) Q Consensus 356 p~~-~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~------ 428 (449) |.+ +++++|+++.+|..|++|+|+|+||||||++|+|||++|+|+++++|+++| +|+++|+|+....++. T Consensus 433 p~L~rl~~ii~rS~~G~idpdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~g---vI~~~evr~rL~~d~~s~Y~~~ 509 (695) T protein:vir:36 433 QLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQ---VIRPDQVAARLNTEPDGPYAGK 509 (695) T ss_pred HHHHHHHHHHHHHhcCCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhc---CCCHHHHHHHHhcCCCcccccc Confidence 755 566677888899998999999999999999999999999999999999998 9999999988544332 Q ss_pred -CCCCCCCCCcch-----------------hhcccccCC Q lcl|Aclame:pro 429 -DEEPLGEEDGDE-----------------EDKATDSAA 449 (449) Q Consensus 429 -~~~~~~~~~~~e-----------------e~~~~~~~a 449 (449) +.+..+..+.++ ......+.| T Consensus 510 ~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (695) T protein:vir:36 510 LDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARA 548 (695) T ss_pred cccccCCCcCccchhhhhHhhhcCcccccccCCCCcccc Confidence 111111111111 111111111 No 14 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=100.00 E-value=1.5e-97 Score=551.34 Aligned_cols=416 Identities=12% Similarity=0.119 Sum_probs=314.8 Q ss_pred Cch-----------------hhHHHHHhh----h---HHHHHHHHHHHHHHHHhhcCcccccchhccCC-cccCCHHHHH Q lcl|Aclame:pro 1 MTD-----------------KLTLAVNHA----L---NDARMARARMGLMVPTMGLDNKRHSAWCEYGF-PELVTYENLY 55 (449) Q Consensus 1 ~~~-----------------~~~~~v~~~----~---~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~-~~~~~~~~l~ 55 (449) |-+ .|+|+-++- + +..+..+..++| .++.++.+ .|.+ .-++.|.-|. T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l--~~~~~~~F~Gy~~la 117 (698) T protein:vir:10 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDF------NGTSMDAL--SFVTSSGFPGFPTLV 117 (698) T ss_pred hcccccccccccccccCCCccccccccceeccccCCccccchhhhhhcc------cccccccc--hhhhccCcchHHHHH Confidence 222 233322221 1 122222222222 12333333 1221 2455666565 Q ss_pred HHHHcCchhHHHHhhhHHHHhcCCcEEecCCChh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 56 SLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDAD----------------DSEDETSWEKKSKQVFTNRLWRSFAEADRR 119 (449) Q Consensus 56 ~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~----------------~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~ 119 (449) .+ .+.|..|+++++++++|+|+|++++++.+++ +.+..+.+++++++| ++|.++.++++| T Consensus 118 ~l-aQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl---~V~~~l~eai~~ 193 (698) T protein:vir:10 118 LL-AQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERL---RIRDAVRTTVIH 193 (698) T ss_pred HH-hhccchhhHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHH---HHHHHHHHHHHh Confidence 55 6889999999999999999999987553332 225556677766666 799999999999 Q ss_pred ccccccEEEEEEec-CCCcccccc--ccc---C-ceeeEEEeccccCChhhhhc-cccccccCCceeEEeeecccCCCcc Q lcl|Aclame:pro 120 RLVGRYAGILLHIR-DEKDWNLPA--TKG---R-GLQKVSVSWAGSLKVAEWDT-GINSKTYGQPKLWKYTERLPNGSSR 191 (449) Q Consensus 120 ~rl~Gga~i~i~i~-d~~~~~~Pl--~~~---~-~l~~i~v~~~~~i~~~~~~~-Dp~s~~yg~P~~y~i~~~~~~~~~~ 191 (449) +|||||++++|.|+ |++.+++|| ++. + +++.|.|+++++++|..++. ||++|+||+|++|+|. T Consensus 194 aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGL~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~--------- 264 (698) T protein:vir:10 194 DQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--------- 264 (698) T ss_pred cccccceEEEEEeecCccccccccccccccccCccceeeeeecccccccchhhhccchhhccCCCceEEEe--------- Confidence 99999999999983 446699999 322 3 58999999999999998885 9999999999999996 Q ss_pred ceEEccceeeeccCCC----------CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhc Q lcl|Aclame:pro 192 RVDIHPDRVFILGDYS----------EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYG 261 (449) Q Consensus 192 ~~~IH~SRli~~~~~~----------~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~ 261 (449) +.+||+|||++|.+++ +||+|++|.+|++|.+++++..++++++++.++..+++ +|++.++ T Consensus 265 G~~IH~SRL~~~vg~pvpd~LKp~y~f~G~Sv~q~~~e~V~~~~rT~~~v~~Li~~~~~~~l~~---------dla~aL~ 335 (698) T protein:vir:10 265 GSEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILM---------DLAQALT 335 (698) T ss_pred cceecceeEEEecCCCchhhhcchhccCCccHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHH---------HHHHhcC Confidence 4579999999998763 68999999999999999999999999998876665532 4555555 Q ss_pred cChHHHHHHHHHHHHHHhccccceeecC-CCceEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch--h Q lcl|Aclame:pro 262 VSIDELQDKFNEVAGEINRGNDVLMTTQ-GATVTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE--D 338 (449) Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ed~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e--D 338 (449) .+.+....++..++.+++++.+++++|+ +|||++++++||||++++++|+++|||+++||+||||||||+|+|+|| | T Consensus 336 ~g~~~~l~~R~eli~~~Rsn~G~~llDk~~Eefeq~st~lSGLddVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D 415 (698) T protein:vir:10 336 PGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGE 415 (698) T ss_pred ChhhHHHHHHHHHHHHhcCccceEEEecCCcceEEEecCcCCHHHHHHHHHHHHHhhhcCchhhhhccCCcccCccchhh Confidence 5555445555567888888999888984 789999999999999999999999999999999999999999998775 8 Q ss_pred HHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHH Q lcl|Aclame:pro 339 QKYFNARCQSRRVDLSFEIE-DFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSRE 417 (449) Q Consensus 339 ~~nyyd~I~~~Qe~~~~p~~-~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~ 417 (449) ++||||+|+++||..++|.+ +++++|+++.+|..|++|+|+|+||||||++|+|||++|+|+++++|++.| +|+++ T Consensus 416 ~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idp~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~g---vI~~~ 492 (698) T protein:vir:10 416 IRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAEARYKQAQSDVLYVQEQ---VIRPD 492 (698) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhc---CCCHH Confidence 99999999999998777755 555667788899999999999999999999999999999999999999998 99999 Q ss_pred HHHHHhcCCCCC---------CCCCCCCCcchhhc------------ccccCC Q lcl|Aclame:pro 418 EIRTAAGYDNDD---------EEPLGEEDGDEEDK------------ATDSAA 449 (449) Q Consensus 418 e~r~~~~~~~~~---------~~~~~~~~~~ee~~------------~~~~~a 449 (449) |+|+...-++.+ ++|..+.+++-+.. +.++.| T Consensus 493 evr~rL~~d~~s~Y~~~~d~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (698) T protein:vir:10 493 QVAARLNTEPDGPYAGKLDANDDPGAPADDDIDGVLTYVQRMAEGGDTGAPTA 545 (698) T ss_pred HHHHHHhccCCCccccccCCcccCCCCCCCcchHHHhhhcCCcCCCCcccccc Confidence 999876444321 11111111111111 111111 No 15 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=100.00 E-value=1.7e-49 Score=287.98 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=143.3 Q ss_pred hhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecC-CCceEEeecccCChHHHHHHHHHHHHhhhcCCceeeecc Q lcl|Aclame:pro 250 EIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQ-GATVTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGN 328 (449) Q Consensus 250 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ed~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gq 328 (449) ++++++|..+++.+...+.+++. ++..+++..+++.+++ +|+|++++++||||++++++++++|||+++||+|||||| T Consensus 1 V~k~~~l~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~ld~~~e~~e~~~~~lsGl~d~l~~~~~~iaa~s~iP~t~LfG~ 79 (201) T protein:vir:10 1 MWKAKGLADLCDDSDGAARLRLA-QVDNNSGVGQAIGIDADSEEYNVLNSDIGGIDTFLSQKFDRIVALSGIHEIILKGK 79 (201) T ss_pred CccchHHHHHhcCChHHHHHHHH-HHHHhhhhhhhheeecCCcceeeeecCcCChHHHHHHHHHHHHhHhcCchhhhcCC Confidence 45677888887776555554443 3444444345555554 588999999999999999999999999999999999999 Q ss_pred Cccccccch--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 329 QQAERSSTE--DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTML 406 (449) Q Consensus 329 s~gg~~s~e--D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~ 406 (449) ||+|+|+|| |++|||++|+++||..++|++++|..|+. .|++|+|+|+|||+||++||||+++++|+++++|+ T Consensus 80 sp~Glnatge~d~~nyyd~i~~~Qe~~l~p~le~l~~~~~-----~~~~~~~~f~pL~~~s~kekAei~~~~a~a~~~~~ 154 (201) T protein:vir:10 80 NVGGVSASQNTALETFYGYVDRKRKAELLPLLEFLLPFIV-----TEQEWSVEFNPLSQVSDKDKSEILEKNVNSVAALI 154 (201) T ss_pred CCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCceEeeCCCCCCCHHHHHHHHHHHHHHHHHHH Confidence 999999765 89999999999999999998888776543 46799999999999999999999999999999999 Q ss_pred HcCCccccCHHHHHHHhcCCCCC----CCCCCCCCcchhhcc-cccCC Q lcl|Aclame:pro 407 GSGDNPAFSREEIRTAAGYDNDD----EEPLGEEDGDEEDKA-TDSAA 449 (449) Q Consensus 407 ~~g~~~~~~~~e~r~~~~~~~~~----~~~~~~~~~~ee~~~-~~~~a 449 (449) ++| +++++|+|+...-++.. +...+++.+..++.+ .+... T Consensus 155 ~~g---~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~e~~dp~~~~~ 199 (201) T protein:vir:10 155 AAG---IIDADEARDTLRAISTEVKIGEGSIQTEVVINESEDPLDVSA 199 (201) T ss_pred HcC---CCCHHHHHHHHHhcCCcCCCCCCCCCccccccccCCCCCCCC Confidence 998 99999999875332221 111111111000000 00000 No 16 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=99.86 E-value=2.1e-21 Score=133.97 Aligned_cols=401 Identities=16% Similarity=0.123 Sum_probs=204.9 Q ss_pred Cch-----h--------------------hHHHHHhhhHHH-HHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHH Q lcl|Aclame:pro 1 MTD-----K--------------------LTLAVNHALNDA-RMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENL 54 (449) Q Consensus 1 ~~~-----~--------------------~~~~v~~~~~~~-~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l 54 (449) |.+ | ..-......+.+ -....|++......+ +..++ + .....++.+| T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~r~g~~~~~~~-~g~~~-----~-~epp~d~~~l 89 (648) T protein:vir:79 17 MWRDEDDDKEPLVLEESMQLGEAPGAMPKGGGGGGSAKRDPKMSLVKRIGLAIMDGG-GGGRD-----F-EEPEFDFNEI 89 (648) T ss_pred hccCccccccccccccccccCCCccccCCCCcccccccccchhHHHHHhHHHHHhhc-CCccc-----c-ccCCcCHHHH Confidence 222 1 000000011111 111234443333222 22222 1 1234578889 Q ss_pred HHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHhccccccEEEEEEe Q lcl|Aclame:pro 55 YSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKS-K-QVFTNRLWRSFAEADRRRLVGRYAGILLHI 132 (449) Q Consensus 55 ~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~-~-~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i 132 (449) ..+|..++.++++|+++++++.+.++.+....+.........+.... + ......+++.+...+ .+||-|++.+.- T Consensus 90 ~~l~~~np~V~~aI~iia~~ia~l~~~i~~~~~~~~~~~~~~~ll~rPn~~~t~~~f~~~l~~~l---ll~GNAYveiiR 166 (648) T protein:vir:79 90 TSAYNTEGYVRQAVDKYIEMMFKADWDFVSKNPNAVEYIRMRFTLMAEATQIPTNQLFIEIAEDL---VKYCNVVIAKSR 166 (648) T ss_pred HHHHhcChHHHHHHHHHHHHHhhCcceEEecCCccchhhHHHHHhhccCCCCCHHHHHHHHHHHH---HhcCCeEEEEEe Confidence 99999999999999999999999999876543221111111000000 0 000012333333332 468888877655 Q ss_pred cCCCccccccc-----cc--CceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccC Q lcl|Aclame:pro 133 RDEKDWNLPAT-----KG--RGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD 205 (449) Q Consensus 133 ~d~~~~~~Pl~-----~~--~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~ 205 (449) + +.. ..|+. .. ..+..+.++....+++ ..-.||.+..|.+.. .+.+..+.++++.||||.. T Consensus 167 d-~~G-~~~~~l~~~~~~~~~~v~~l~pl~p~~v~v-------~~d~~g~~~~Y~y~~---~g~~~~~~~~~~dIIHik~ 234 (648) T protein:vir:79 167 A-KDA-LPFQGMNVMGVGDSMPVAGYFPLNLASMKV-------KRDKFGMIKGWQQEQ---EGQDKPQKFKPEDIVHIYY 234 (648) T ss_pred c-CCC-ccchhhhhhhhccccceeeeEeecCceeEE-------EEcCCCceeeeEEEe---cCCceeEEecCccEEEEcc Confidence 3 222 12222 11 1223333333322221 112578888887652 2233456788999999952 Q ss_pred ----CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh-hhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 206 ----YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQL-NVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINR 280 (449) Q Consensus 206 ----~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 280 (449) ....|.|.+..+.+.|.....+....+. ++++....- .+++. . +....+..+++ ...++. T Consensus 235 ~~~~d~~~GlSpi~~a~~aI~l~~aa~~~~~~-fF~NGa~P~gil~~~----------~-~~~~~e~~k~~---~e~~~~ 299 (648) T protein:vir:79 235 KREKGRAFGTPWLLPALDDIRALRQVEENVLR-LVYRNLHPLWHVKVG----------L-EQEGFGAEEGE---VDLVRG 299 (648) T ss_pred CCCCCCceeccHHHHHHHHHHHHHHHHHHHHH-HHhccCCccEEEEeC----------C-CccchHHHHHH---HHHHHH Confidence 3356999999999988666555544443 344443321 11110 0 01111111111 122222 Q ss_pred cccceeec-CCCceEEeecccCC------hHHHHHHHHHHHHhhhcCCceeeeccCccccccch--hHHHHHHHHHHHHH Q lcl|Aclame:pro 281 GNDVLMTT-QGATVTPLVTSVAD------PTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE--DQKYFNARCQSRRV 351 (449) Q Consensus 281 ~~~~~l~~-~~ed~~~~~~~lsg------l~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e--D~~nyyd~I~~~Qe 351 (449) ..+.+.+. ..-+++.+..+..+ +.+......++||++.+||-.+ +|...++..++. ...+|+++|...|+ T Consensus 300 ~~~~~~i~gg~v~~~~~~i~~~~s~~dlqfle~rk~~~~eIa~aFgVPP~l-LG~~~~ss~stae~~~~~~~~~i~~l~~ 378 (648) T protein:vir:79 300 EVENMDVEGGMVTTERVNISSIASNQIIDAKEYLKHFEQRAFTVLGVSELM-MGRGGTASRSTGDNLSSDFKDRIKALQK 378 (648) T ss_pred hcccccccccccccceeeccccCCHHHHHHHHHHHHHHHHHHHHhCCCHhH-cccCCCccchHHHHHHHHHHHHHHHHHH Confidence 22223222 22245555554322 2334566788999999999765 586554444443 56789999999987 Q ss_pred hhhHHHHHHHHHHHHH--hcC---CCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCC Q lcl|Aclame:pro 352 DLSFEIEDFCDKLIEL--KII---DAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYD 426 (449) Q Consensus 352 ~~~~p~~~~l~~l~~~--~~~---~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~ 426 (449) .+..++...+.+.+.. .+. .+...+.|.|++|...+++.+++. +..++++| ++|++|+|+..+++ T Consensus 379 ~i~~~le~~~~~~ll~e~~l~~~l~~d~~ieF~~~~Llr~D~~~~a~~-------~~~l~~~G---ilT~NEaR~~lGlp 448 (648) T protein:vir:79 379 VMATFINEFMVKEILMEGGFDPVLNPDDKVEFRFNEIDMDSKIKLENQ-------AVFLYEHN---AISEDEMRELIGRD 448 (648) T ss_pred HHHHHHHHHHHHHHhhhhhccccccccceEEEeecccchhhHHHHHHH-------HHHHHhCC---CcCHHHHHHHhCCC Confidence 7766666555443322 222 223457889999998887766544 44577787 99999999999998 Q ss_pred CCCCCCCC---------C-CCcchh----hcc--cccCC Q lcl|Aclame:pro 427 NDDEEPLG---------E-EDGDEE----DKA--TDSAA 449 (449) Q Consensus 427 ~~~~~~~~---------~-~~~~ee----~~~--~~~~a 449 (449) |..+.... . ....+. ... ..++| T Consensus 449 Pi~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a 487 (648) T protein:vir:79 449 PVDDGEGRAKMHLQMVTIAQATALAALAPTPAGGSSASA 487 (648) T ss_pred CCCCCCCccccccccccchhccccccCCCCCCCCCCCCc Confidence 86432100 0 000000 000 00011 No 17 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=99.71 E-value=6.1e-17 Score=109.47 Aligned_cols=381 Identities=13% Similarity=0.097 Sum_probs=194.1 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) ++.|.... .+ .........+. ...|.. . ....++.. .++ ++..++++|++.|.+.-+-.+ T Consensus 2 ~f~~~~~~--~~---~~~~~~~~~~~-~~~g~~-~---------~~~~v~~~---~al-~~~~v~~~i~~ia~~ia~lp~ 61 (409) T protein:vir:10 2 LFRKGFKN--QS---QEISIDDKKIL-EWLGIN-P---------SETYVNGK---SCL-KQATVFGCIRILSDNISKLPI 61 (409) T ss_pred cccccccC--cC---CCCCCChHHHH-HHhcCC-c---------Ccceechh---hhh-ccHHHHHHHHHHHHhhhhCce Confidence 33333211 00 00001111111 111111 0 01223332 233 467789999999999998888 Q ss_pred EEecCCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-ccccccEEEEEEecCCCcccccccccCceeeEEEecccc Q lcl|Aclame:pro 81 EIIEGDDADDSEDETSWEKKSK-QVFTNRLWRSFAEADRR-RLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGS 158 (449) Q Consensus 81 ~i~~~~~~~~~~~~~~~e~~~~-~l~~~~~~~~~~ea~~~-~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~ 158 (449) .+....+.........+...++ +=....-+..+.+.+.+ -.++|-|++++.-+. .. .+..|.|+.... T Consensus 62 ~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~-~G---------~~~~L~~i~~~~ 131 (409) T protein:vir:10 62 KIYQKKDGIKRVPDHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKK-NG---------EIKGLYPLKSDG 131 (409) T ss_pred EEEEecCCeeeccCchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC-CC---------cEEEEEEEcCCc Confidence 8754322111111111222221 10000111122222222 356788888775432 11 133455555554 Q ss_pred CChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC---CCCcchhHHHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 159 LKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY---SEDAIGFLEPAYNAFVSLEKVEGGSGESF 235 (449) Q Consensus 159 i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~---~~~G~s~l~~~~~~l~~~~~~~~~~a~l~ 235 (449) +++.. +.+.. ..+.....|.+.. ..+..+.++++.||||.+. ...|.|.++.+.+.+.....+...... + T Consensus 132 V~v~~-~~~~~-~~~~~~~~y~~~~----~~g~~~~~~~~evih~r~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~-~ 204 (409) T protein:vir:10 132 MKIFV-DDTGL-LNSENNVWYLYTD----DLGQRHKFMSDEILHFKGLTADGLAGLSVIELLNHLIENGKSSETYLNN-F 204 (409) T ss_pred eEEEE-cCCcc-ccccceEEEEEEe----CCceeEEeccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHH-H Confidence 44321 12221 1222223455432 2334568999999998643 345999999999887665555444333 3 Q ss_pred HHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccCC--hHHHHH Q lcl|Aclame:pro 236 LKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVAD--PTATYN 308 (449) Q Consensus 236 ~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~lsg--l~d~~~ 308 (449) +++..+. ..++ ..+...++..+++.+.+.+..++. ..+++..+.+|+.++.+... +-+... T Consensus 205 f~ng~~~~gil~------------~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~ 272 (409) T protein:vir:10 205 FKNGLQVKGLVQ------------YAGDLNPEAEEVFKENFERMSSGLKNAHRIAMLPIGYKFEPISQKLVDAQFLENSQ 272 (409) T ss_pred HhccCCCcEEEE------------cCCCCCHHHHHHHHHHHHHHhccccccCCceecCCCceEEEccCChhhHHHHHHHH Confidence 4443221 1111 112223445555555555544332 24566677789998877644 456677 Q ss_pred HHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC---CCC--ceEEeCC Q lcl|Aclame:pro 309 VNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA---VAK--KAVIWDD 382 (449) Q Consensus 309 ~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~---~~~--~~~~f~p 382 (449) ...++||++.+||..+|-+...+..++.+ ..+.||.. .+.|+.+.+..-+-..+... +.+ +.|.+.. T Consensus 273 ~~~~~Ia~~fgVPp~~lg~~~~~~~~~~e~~~~~f~~~-------~l~P~~~~ie~~ln~kL~~~~~~~~~~~~~fd~~~ 345 (409) T protein:vir:10 273 LTIRQIASVFGVKMHQLNDLDRATHSNITEQNREFYID-------TLQSILNMYELEINYKLFLISEIKNGFYSKFNVDT 345 (409) T ss_pred HHHHHHHHHhCCCHHHcCCCCCCccccHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCchhccCCcEEEEechh Confidence 88999999999999877444334344444 56677643 35676666655444443322 334 4555668 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCC--C-----CCCCC--cchhhccccc Q lcl|Aclame:pro 383 LNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEE--P-----LGEED--GDEEDKATDS 447 (449) Q Consensus 383 L~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~--~-----~~~~~--~~ee~~~~~~ 447 (449) |...+.+++ ++++.+++++| ++|++|+|+..+++|.+.- . ....+ ++...+..|- T Consensus 346 ll~~d~~~~-------~~~~~~~~~~G---~~T~NE~R~~lgl~p~~ggD~~~~~~n~~~~~~~~~~~~kgGe~ 409 (409) T protein:vir:10 346 ILRADIKTR-------YESYKEAIQNG---FKTPNEIRELEEDEPLEGGDVLLINGNMIPVKMAGEQYSKGGEK 409 (409) T ss_pred hhccCHHHH-------HHHHHHHHhCC---CcCHHHHHHHhCCCCCCCcCeeeeccCccchhhccccccccCCC Confidence 878887776 45566788888 9999999999999886321 0 00000 0000111111 No 18 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=99.69 E-value=1.3e-16 Score=107.65 Aligned_cols=392 Identities=12% Similarity=0.063 Sum_probs=194.7 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) ++++|-..-+... ..+. ... ...+....-+..+..+|.+...+.. -..++ ++..+.++|++.++++-+-.+ T Consensus 3 ~f~~lf~~~~~~~-~~~~-----~~~-~~~~~~~~~~~~~~~~g~~~~~~v~-~~~al-~~~~v~~ci~~ia~~iA~lp~ 73 (422) T protein:vir:13 3 FLRGLFNKKNNND-EKRS-----NYD-EDIGIDISDSNFWEKFGIKLNFSVR-GKRAL-KENTVYVCTKIRAESIGKLSL 73 (422) T ss_pred hhhhhhhccCCcc-chhh-----hhh-hccccccCcchhhhhccccCCcccc-hhhhh-ccHHHHHHHHHHHHhhhhCce Confidence 2232211000000 0000 000 0000000011122333332211111 12233 456778999999999999999 Q ss_pred EEecCCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEecccc Q lcl|Aclame:pro 81 EIIEGDDADDSEDETSWEKKSK-QVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGS 158 (449) Q Consensus 81 ~i~~~~~~~~~~~~~~~e~~~~-~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~ 158 (449) .+....+.... ..+...++ +=....-+..+.+.+.+. .++|.|++++.- +... .+..|.|+.+.. T Consensus 74 ~~~~~~~~~~~---~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r-~~~G---------~~~~L~~i~~~~ 140 (422) T protein:vir:13 74 KIYKDKEEYKE---HELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIER-DRKG---------KIIGLYPINSDN 140 (422) T ss_pred EEEecCccccc---chHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEE-CCCC---------cEEEEEEECCcc Confidence 88654332211 11112221 000001112233333333 456777766643 2211 134455555444 Q ss_pred CChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 159 LKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGES 234 (449) Q Consensus 159 i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l 234 (449) +.+.. +.|.....++. .+|.+.. ..+....++++.+||+... ...|.|.++.+.+.+.....+... ..- T Consensus 141 v~~~~-~~~~~~~~~~~-~~y~~~~----~~g~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~-~~~ 213 (422) T protein:vir:13 141 VTKII-DDDNFLSSLSK-VWYVVTD----KNGKEHKLLPDEMLHFIGDITLDGLIGIKPLDYLRCTIENGRATQEF-INK 213 (422) T ss_pred eEEEE-cCCcceeccce-EEEEEEe----CCCeEEEEcccceEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHH-HHH Confidence 44322 23333233333 4555542 2334567999999999643 345899999998877654444333 333 Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccCC--hHHHHH Q lcl|Aclame:pro 235 FLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVAD--PTATYN 308 (449) Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~lsg--l~d~~~ 308 (449) ++++..+.- .+....+...++..+++.+.+....++. ..+++..+-+|+.++.+... +-+... T Consensus 214 ~f~ng~~p~-----------gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~le~~~ 282 (422) T protein:vir:13 214 FFKNGLSIK-----------GIVQYVGDLDEKAKKIFKKEFESMSNGLENAHSISLLPFGYQFQPISLSMADAQFLENSK 282 (422) T ss_pred HHhccCCcc-----------EEEEeCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceeeeccCChhHHHHHHHHH Confidence 344432211 1111112223445555555555443332 24566667789988876554 446666 Q ss_pred HHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC---CCceEE--eCC Q lcl|Aclame:pro 309 VNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV---AKKAVI--WDD 382 (449) Q Consensus 309 ~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~---~~~~~~--f~p 382 (449) .....||.+.|||...|.+...+..++.+ ....||.. .+.|+.+.+..-+-..+..+. .++.|+ +.. T Consensus 283 ~~~~~Ia~~fgVpp~~lg~~~~~~~sn~e~~~~~f~~~-------~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~ 355 (422) T protein:vir:13 283 LTKRELAATFGMKSYHLNDLERATFNNLTEQQKDFYVT-------TLQSSLTVYEQEIQDKLFSQYETLQDVKAEFNVDT 355 (422) T ss_pred HHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCChhhhcCCceEEeechh Confidence 78889999999999777665555555544 55666643 356766666655444443322 244444 557 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC--C-C------CCCcchhhcccccCC Q lcl|Aclame:pro 383 LNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP--L-G------EEDGDEEDKATDSAA 449 (449) Q Consensus 383 L~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~--~-~------~~~~~ee~~~~~~~a 449 (449) |...|.++++ +++++++++| ++|++|+|+..+++|.+.-+ . + +..++...+..+.-. T Consensus 356 l~r~d~~~~~-------~~~~~~~~~G---~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~l~~~~~~~~~~g~~~g 421 (422) T protein:vir:13 356 ILRSDIKTRY-------EAYRIGIQGG---FIEANEARRRENLPPVEGGDRLLVNGNMIPIEMAGEQYKKGGEKGG 421 (422) T ss_pred hhcCCHHHHH-------HHHHHHHhCC---CcCHHHHHHHhCCCCCCCcCeeeeccCccchhhcccccccCCCcCC Confidence 8777777665 4566788887 99999999999998863210 0 0 000000011111111 No 19 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=99.68 E-value=1e-15 Score=102.75 Aligned_cols=405 Identities=9% Similarity=0.065 Sum_probs=197.6 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHH-----------HHHHHhhcCccccc---chhccCCcccCCHHHHHHHHHcCchhHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMG-----------LMVPTMGLDNKRHS---AWCEYGFPELVTYENLYSLYRRGGIAHG 66 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~-----------~~~~~~g~~t~r~~---~~~~~~~~~~~~~~~l~~~Y~~~~l~r~ 66 (449) |++|=...+.... .++.+- .--.+.|+....-+ ..........+++.++.++|..+.++++ T Consensus 13 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 87 (535) T protein:vir:10 13 LSNKKSTSYIELG-----DYDKDIVNKAIRPGRASARDTVDGIDIADGNVAGQYSVASISDVLSTKKLLKAYADNDIVQA 87 (535) T ss_pred hhhhhhhhhHHHh-----hhhHHHHHhhhhhhhhhhhccccccccccCCcccccccCccccccCHHHHHHHhccChhHHH Confidence 4433222222111 011111 11111121111100 1111112245788999999999999999 Q ss_pred HHhhhHHHHhc-----------CCcE--EecCCChhh---HHHHHHHHHHHH----HHHH-HHHHHHHHHHHHh-ccccc Q lcl|Aclame:pro 67 AVEKLVGKCWQ-----------TNPE--IIEGDDADD---SEDETSWEKKSK----QVFT-NRLWRSFAEADRR-RLVGR 124 (449) Q Consensus 67 iVd~pa~d~~r-----------~~~~--i~~~~~~~~---~~~~~~~e~~~~----~l~~-~~~~~~~~ea~~~-~rl~G 124 (449) ||++.+...+. .++. +...+.... ......++..+. .+.. ...|..+...+.+ ..++| T Consensus 88 ~i~t~~~~va~~~~i~~~s~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~~~~~~~~~~~~~lv~d~l~~~ 167 (535) T protein:vir:10 88 IIRTRTNQVLTYSNPSRYNRNGVGFKVELKDATKVMSKAQIKRAHEIEDFIYNTGSEYYEWRDTFPRLLTKIINDMYVQD 167 (535) T ss_pred HHHHHHHHHHHHHHHHHHhcccCcceeEEEeccCCCcchhhhhhhHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhhC Confidence 99998887552 1122 222221111 111111222221 0000 1233344443332 35566 Q ss_pred cEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeecc Q lcl|Aclame:pro 125 YAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILG 204 (449) Q Consensus 125 ga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~ 204 (449) |.+++..++++.. .+..|.|+....+++. .|+...+ +-+.+|++. +...+..+.++.||||. T Consensus 168 g~ay~~i~r~~~G---------~~~~L~~l~p~~V~v~---~d~~~~~-~~~~~~~~~-----~~~~~~~~~~~eiih~~ 229 (535) T protein:vir:10 168 QINIERIFKNDSN---------ELDHFNAVDASKVVIS---YSPRSKD-QPRKFEQFV-----SETKSVKFSERNLTFIN 229 (535) T ss_pred CceEEEEEECCCC---------cEEEEEEeCCceeEEE---EcCcccc-CceEEEEEe-----cCceeEEECcccEEEEe Confidence 5544443433221 1344555554444432 2322111 123455553 12335678999999986 Q ss_pred CCC-------CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHH Q lcl|Aclame:pro 205 DYS-------EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAG 276 (449) Q Consensus 205 ~~~-------~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 276 (449) ..+ +.|.|.++.+...|.....+....+. ++++.... ..+++.. ........+..+++.+... T Consensus 230 ~~~~~~~~~~~~G~Spi~~~~~~i~~~~aa~~~~~~-~f~ng~~p~giL~~~~--------~~~~~ls~e~~e~lk~~~~ 300 (535) T protein:vir:10 230 YWNLSDTDRRGYGYSPVEASIPLIRAIYDTEQFNAR-FFSQGGTTRGILVIDQ--------DGDAQANQMMLAGIRRQWT 300 (535) T ss_pred ccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHH-HHhccCCccEEEEecC--------CCCcccCHHHHHHHHHHHH Confidence 432 34899999988877665554433332 33332221 1111100 0011233455566655554 Q ss_pred HHhccc---cc-eee-cCCCceEEeecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCc-ccccc-ch-hHHHHHHHH Q lcl|Aclame:pro 277 EINRGN---DV-LMT-TQGATVTPLVTSVAD--PTATYNVNLQTAAAGVDIPTRILIGNQQ-AERSS-TE-DQKYFNARC 346 (449) Q Consensus 277 ~~~~~~---~~-~l~-~~~ed~~~~~~~lsg--l~d~~~~~~~~iaaas~IP~t~L~Gqs~-gg~~s-~e-D~~nyyd~I 346 (449) ...+|. +. .++ +.+-+|+.++.+... +-+........||.+.+||-..| |-.. +..+. .+ ....|.+.+ T Consensus 301 ~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~eIa~afgVPp~~l-G~~~~at~sn~~~~~~~~~~s~~ 379 (535) T protein:vir:10 301 SQGSGLGGAWKIPILAAKDAKFVNMTQNSRDMEFDKFLNFMIYDTAAIFQMQPEEI-NFPNNGGSTGKSGTKSVNEGSTA 379 (535) T ss_pred HHhcCcccccccccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccccCcccccchhhhhhhhhhhH Confidence 443333 22 233 345577777766543 45556678889999999998666 6433 43333 33 556677777 Q ss_pred HHHHHh----hhHHHHHHHHHHHHHhcCC-CCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHH Q lcl|Aclame:pro 347 QSRRVD----LSFEIEDFCDKLIELKIID-AVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRT 421 (449) Q Consensus 347 ~~~Qe~----~~~p~~~~l~~l~~~~~~~-~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~ 421 (449) +..+.. .+.|+++.+...+-..+.. ...++.|+|+.|...+.++++++.+ ... +| .+|++|+|+ T Consensus 380 E~~~~~~~~~~L~P~l~~ie~~ln~~Ll~~~~~~~~f~f~~l~~~d~~~r~~~~~-------~~~-~g---~lT~NE~R~ 448 (535) T protein:vir:10 380 KAKLESSKDKGLTPLLSFIEQVINDKIMRYVDTDYRFSFTLGDAQDKLQEEQVWK-------LKL-AN---GYFINEYRK 448 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCeEEEEeccccccCHHHHHHHHH-------HHH-cC---CCCHHHHHH Confidence 776653 3678887777655444332 2346899999999999888776532 222 34 589999999 Q ss_pred HhcCCCCCC--CCC-------------------CCCCcchhhc--ccccCC Q lcl|Aclame:pro 422 AAGYDNDDE--EPL-------------------GEEDGDEEDK--ATDSAA 449 (449) Q Consensus 422 ~~~~~~~~~--~~~-------------------~~~~~~ee~~--~~~~~a 449 (449) ..+++|... .+. ++..++.+.. ..++.. T Consensus 449 ~~gl~piegGD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~q~ 499 (535) T protein:vir:10 449 DHGLKTVDGLDVPGFIGSAENFINATGFGQPNVPDSSDDSGSTLGERERQE 499 (535) T ss_pred HhCCCCCCCccccccccchhhcccccccccccCCCCCCCccccCCccccCc Confidence 999887531 100 0000000000 000000 No 20 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=99.68 E-value=1.9e-16 Score=106.76 Aligned_cols=383 Identities=10% Similarity=-0.010 Sum_probs=197.1 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) +++||- .-+.......... ...+.... |++ ... ....++.+. +..++-+.++|+..+++.-+-.+ T Consensus 2 ~~~~~f-~~~~~~~~~~~~~-~~~~~~~~-~~~---~~~-----~~~~v~~~~----al~~~~v~~~i~~Ia~~ia~l~~ 66 (416) T protein:vir:12 2 LLERMF-EKRSGSSDHEDGF-NNILLNMF-GGR---KTA-----SGERVSESN----SLVQPDIFACVNVLSDDIAKLPI 66 (416) T ss_pred ccchhc-ccccCccccCccc-hhHHHHhh-cCc---ccc-----cCceechhh----hhccHHHHHHHHHHHHhhhhCce Confidence 333321 0000000000000 00000011 111 111 112333332 23466778999999999999988 Q ss_pred EEecCCChhhHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccc Q lcl|Aclame:pro 81 EIIEGDDADDSED-ETSWEKKSK-QVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAG 157 (449) Q Consensus 81 ~i~~~~~~~~~~~-~~~~e~~~~-~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~ 157 (449) ++....+...... ....-..+. +=....-+..+.+.+.+. .++|-|++++.-++.. .+..|.|+... T Consensus 67 ~~~~~~~~~~~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G----------~~~~L~~l~~~ 136 (416) T protein:vir:12 67 HTYKRTDGGIERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHG----------YPEALFPLRPD 136 (416) T ss_pred EEEEecCCccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC----------cEEEEEEECCc Confidence 8754433221111 111111111 100001112233333333 4578777776542211 13344454444 Q ss_pred cCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 158 SLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEKVEGGSGES 234 (449) Q Consensus 158 ~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~~~~~~~a~l 234 (449) .+++.. ++ .+.+.+|++.. .+..+.++++.++||...+ ..|.|.++.+...+.....+....+. T Consensus 137 ~v~v~~---~~----~~~~~~~~~~~-----~g~~~~~~~~eiih~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~- 203 (416) T protein:vir:12 137 YTNAYV---HP----TTGMLWYQTVL-----NGKAIELYDYEVLHFKGLSTDGIHGKSPIGVVREHIGAQAAATKYNAK- 203 (416) T ss_pred ceEEEE---eC----CCcEEEEEEec-----CCeEEEecCccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHH- Confidence 443321 11 12345666631 2345688999999986543 45889999998877655544433333 Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeecccCC--hHHHHHHHHH Q lcl|Aclame:pro 235 FLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSVAD--PTATYNVNLQ 312 (449) Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~lsg--l~d~~~~~~~ 312 (449) ++++.... ..+....+...++..+++.+......++-+.+++..+-+|+.++.+... +-+......+ T Consensus 204 ~~~ng~~p-----------~~il~~~~~~~~e~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~ 272 (416) T protein:vir:12 204 LYKNEATP-----------RGILKVPAFLDEKPKENVRKEWKRVNKVENIAIIDYGLEYQSISMPLQEAQFVESMKFNKA 272 (416) T ss_pred HHhcCCCC-----------ceEEecCCCCCHHHHHHHHHHHHHHhcCCCeeecCCCceEEEccCChhhHHHHHHHHHHHH Confidence 33332211 1111111223455566666666666666667777778899998877654 4577888899 Q ss_pred HHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC---CCc--eEEeCCCCCC Q lcl|Aclame:pro 313 TAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV---AKK--AVIWDDLNEQ 386 (449) Q Consensus 313 ~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~---~~~--~~~f~pL~~~ 386 (449) .||.+.+||...|-+...+..++.+ ..++||.. .+.|+...+..-+-..+..+. .++ .|.+..|... T Consensus 273 ~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~-------~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~ 345 (416) T protein:vir:12 273 QISMIYKVPLHKLNELDKATFSNIEHQSIEYVRN-------TLQPWIVNFEQELNVKLFLDHDQKSGHYVKFNIDSELRG 345 (416) T ss_pred HHHHHhCCCHHHhCCccCCCcccHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCchhhcCCceEEeechhhhcc Confidence 9999999999888665545444444 55677743 456766666655544443322 234 4455677777 Q ss_pred CHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--CC-----CCCCCcchhhcccccCC Q lcl|Aclame:pro 387 TGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--EP-----LGEEDGDEEDKATDSAA 449 (449) Q Consensus 387 sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~~-----~~~~~~~ee~~~~~~~a 449 (449) |.+++| +++.+++++| ++|++|+|+..+++|... .. .-..+.-++....+..+ T Consensus 346 d~~~~~-------~~~~~~~~~G---~~T~NE~R~~~gl~Pi~ggd~~~~~~n~~~~~~~~~~~~~~~~~ 405 (416) T protein:vir:12 346 DSKTQA-------EYLKTLHETG---VLNKDEIRELLERNPIENGDKYISSLNYVFLDFLEEYQRLKAGG 405 (416) T ss_pred CHHHHH-------HHHHHHHhCC---CcCHHHHHHHhCCCCCCCcceeeeccccccccccchhhcccccc Confidence 777764 5667788888 999999999999998632 10 00011111111111111 No 21 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=99.68 E-value=3.2e-16 Score=105.54 Aligned_cols=387 Identities=10% Similarity=0.060 Sum_probs=191.1 Q ss_pred CchhhHHHHHhhhH----HHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHh Q lcl|Aclame:pro 1 MTDKLTLAVNHALN----DARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCW 76 (449) Q Consensus 1 ~~~~~~~~v~~~~~----~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~ 76 (449) +.+|++.-.+-..+ ....... ........|.. . ....++. ..++ +++.+.++|++.|.++- T Consensus 3 ~~~r~~~~~~~~~r~~~~~~~~~~~-~~~~~~~~g~~--~--------~~~~v~~---~~al-~~~~v~~~i~~ia~~ia 67 (432) T protein:vir:10 3 IVDSVKKFFNFEKRQTSQVIELNKD-DEKLLEWLGIS--P--------STISVKG---KNAL-KVATVFACIKILSESVS 67 (432) T ss_pred hHHHHHHhcCccccCcccccccCCc-hHHHHHHhCCC--c--------Cccccch---hhhh-ccHHHHHHHHHHHHhhc Confidence 33443311110000 0000000 00000011100 0 0011222 2344 46788999999999999 Q ss_pred cCCcEEecCCChhhH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEE Q lcl|Aclame:pro 77 QTNPEIIEGDDADDS-EDETSWEKKSKQ-VFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSV 153 (449) Q Consensus 77 r~~~~i~~~~~~~~~-~~~~~~e~~~~~-l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v 153 (449) +-.+.+...++.... .....+...++. =....-+..+.+.+.+. .++|-+++++.- ++.. .+..|.| T Consensus 68 ~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r-~~~G---------~~~~L~~ 137 (432) T protein:vir:10 68 KLPLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEF-DRKG---------KVQALWP 137 (432) T ss_pred cCceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEE-CCCC---------cEEEEEE Confidence 998887543322111 111112222210 00000112222333333 457777777653 2211 1344555 Q ss_pred eccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 154 SWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEG 229 (449) Q Consensus 154 ~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~ 229 (449) +....+++..- .+.. ..++...+|.+. ..+..+.++++.||||... .+.|.|.++.+...+.....+.. T Consensus 138 i~~~~v~v~~d-~~~~-~~~~~~~~y~~~-----~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~ 210 (432) T protein:vir:10 138 IDASKVTVYID-DVGL-LNSKTKMWYVVN-----TGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADK 210 (432) T ss_pred EcCceeEEEEc-Cccc-ccccceEEEEEe-----cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHH Confidence 55444443211 1111 122222344443 2334577999999999532 35699999999887766555544 Q ss_pred HHHHHHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccCCh- Q lcl|Aclame:pro 230 GSGESFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVADP- 303 (449) Q Consensus 230 ~~a~l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~lsgl- 303 (449) ..+.. +++..+. ..+++ .+...++..+++.+.+....++. ..+++..+-+|+.++.+.... T Consensus 211 ~~~~~-~~ng~~p~gil~~------------~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q 277 (432) T protein:vir:10 211 FINNF-YKQGLQVKGLVQY------------VGDLNEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQ 277 (432) T ss_pred HHHHH-HhccCCccEEEEc------------CCCCCHHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHH Confidence 43333 3332221 11111 12223444555555554443332 345666677899988776543 Q ss_pred -HHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---CCCC--c Q lcl|Aclame:pro 304 -TATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIID---AVAK--K 376 (449) Q Consensus 304 -~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~---~~~~--~ 376 (449) -+......++||.+.|||-.+|-+...+..++.+ -.+.||. ..+.|+.+.+..-+-..+.. ...+ + T Consensus 278 ~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~~~~-------~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~ 350 (432) T protein:vir:10 278 FLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFYT-------DTLQATLTMYEQEMTYKLFLDSELDKGFYS 350 (432) T ss_pred HHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcChhhcCCCcEE Confidence 4667778899999999998777444444444444 4556653 34567666666544433322 1233 4 Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--C--------CCCCC-----Ccchh Q lcl|Aclame:pro 377 AVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--E--------PLGEE-----DGDEE 441 (449) Q Consensus 377 ~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~--------~~~~~-----~~~ee 441 (449) .|.+..|...|.+++++ +.++++++| ++|++|+|+..+++|... . +.++. ...++ T Consensus 351 ~fd~~~l~~~d~~~~~~-------~~~~~~~~G---~~t~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~k~~~~ 420 (432) T protein:vir:10 351 KFNVDAILRADIKTRYE-------AYRTGIQGG---FLKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDT 420 (432) T ss_pred EeechhhhcCCHHHHHH-------HHHHHHhCC---CcCHHHHHHHhCCCCCCCCCeEeecccccchhhccccccCCCCC Confidence 45566888888888664 566778887 999999999999988521 1 11110 11111 Q ss_pred hcccccCC Q lcl|Aclame:pro 442 DKATDSAA 449 (449) Q Consensus 442 ~~~~~~~a 449 (449) ..+....+ T Consensus 421 ~~~~~~~~ 428 (432) T protein:vir:10 421 NGEVSKEG 428 (432) T ss_pred CCCCCCCC Confidence 11111111 No 22 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=99.68 E-value=3.2e-16 Score=105.54 Aligned_cols=387 Identities=10% Similarity=0.060 Sum_probs=191.1 Q ss_pred CchhhHHHHHhhhH----HHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHh Q lcl|Aclame:pro 1 MTDKLTLAVNHALN----DARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCW 76 (449) Q Consensus 1 ~~~~~~~~v~~~~~----~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~ 76 (449) +.+|++.-.+-..+ ....... ........|.. . ....++. ..++ +++.+.++|++.|.++- T Consensus 3 ~~~r~~~~~~~~~r~~~~~~~~~~~-~~~~~~~~g~~--~--------~~~~v~~---~~al-~~~~v~~~i~~ia~~ia 67 (432) T protein:vir:10 3 IVDSVKKFFNFEKRQTSQVIELNKD-DEKLLEWLGIS--P--------STISVKG---KNAL-KVATVFACIKILSESVS 67 (432) T ss_pred hHHHHHHhcCccccCcccccccCCc-hHHHHHHhCCC--c--------Cccccch---hhhh-ccHHHHHHHHHHHHhhc Confidence 33443311110000 0000000 00000011100 0 0011222 2344 46788999999999999 Q ss_pred cCCcEEecCCChhhH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEE Q lcl|Aclame:pro 77 QTNPEIIEGDDADDS-EDETSWEKKSKQ-VFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSV 153 (449) Q Consensus 77 r~~~~i~~~~~~~~~-~~~~~~e~~~~~-l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v 153 (449) +-.+.+...++.... .....+...++. =....-+..+.+.+.+. .++|-+++++.- ++.. .+..|.| T Consensus 68 ~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r-~~~G---------~~~~L~~ 137 (432) T protein:vir:10 68 KLPLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEF-DRKG---------KVQALWP 137 (432) T ss_pred cCceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEE-CCCC---------cEEEEEE Confidence 998887543322111 111112222210 00000112222333333 457777777653 2211 1344555 Q ss_pred eccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 154 SWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEG 229 (449) Q Consensus 154 ~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~ 229 (449) +....+++..- .+.. ..++...+|.+. ..+..+.++++.||||... .+.|.|.++.+...+.....+.. T Consensus 138 i~~~~v~v~~d-~~~~-~~~~~~~~y~~~-----~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~ 210 (432) T protein:vir:10 138 IDASKVTVYID-DVGL-LNSKTKMWYVVN-----TGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADK 210 (432) T ss_pred EcCceeEEEEc-Cccc-ccccceEEEEEe-----cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHH Confidence 55444443211 1111 122222344443 2334577999999999532 35699999999887766555544 Q ss_pred HHHHHHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccCCh- Q lcl|Aclame:pro 230 GSGESFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVADP- 303 (449) Q Consensus 230 ~~a~l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~lsgl- 303 (449) ..+.. +++..+. ..+++ .+...++..+++.+.+....++. ..+++..+-+|+.++.+.... T Consensus 211 ~~~~~-~~ng~~p~gil~~------------~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q 277 (432) T protein:vir:10 211 FINNF-YKQGLQVKGLVQY------------VGDLNEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQ 277 (432) T ss_pred HHHHH-HhccCCccEEEEc------------CCCCCHHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHH Confidence 43333 3332221 11111 12223444555555554443332 345666677899988776543 Q ss_pred -HHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---CCCC--c Q lcl|Aclame:pro 304 -TATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIID---AVAK--K 376 (449) Q Consensus 304 -~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~---~~~~--~ 376 (449) -+......++||.+.|||-.+|-+...+..++.+ -.+.||. ..+.|+.+.+..-+-..+.. ...+ + T Consensus 278 ~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~~~~-------~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~ 350 (432) T protein:vir:10 278 FLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFYT-------DTLQATLTMYEQEMTYKLFLDSELDKGFYS 350 (432) T ss_pred HHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcChhhcCCCcEE Confidence 4667778899999999998777444444444444 4556653 34567666666544433322 1233 4 Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--C--------CCCCC-----Ccchh Q lcl|Aclame:pro 377 AVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--E--------PLGEE-----DGDEE 441 (449) Q Consensus 377 ~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~--------~~~~~-----~~~ee 441 (449) .|.+..|...|.+++++ +.++++++| ++|++|+|+..+++|... . +.++. ...++ T Consensus 351 ~fd~~~l~~~d~~~~~~-------~~~~~~~~G---~~t~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~k~~~~ 420 (432) T protein:vir:10 351 KFNVDAILRADIKTRYE-------AYRTGIQGG---FLKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDT 420 (432) T ss_pred EeechhhhcCCHHHHHH-------HHHHHHhCC---CcCHHHHHHHhCCCCCCCCCeEeecccccchhhccccccCCCCC Confidence 45566888888888664 566778887 999999999999988521 1 11110 11111 Q ss_pred hcccccCC Q lcl|Aclame:pro 442 DKATDSAA 449 (449) Q Consensus 442 ~~~~~~~a 449 (449) ..+....+ T Consensus 421 ~~~~~~~~ 428 (432) T protein:vir:10 421 NGEVSKEG 428 (432) T ss_pred CCCCCCCC Confidence 11111111 No 23 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=99.68 E-value=3.2e-16 Score=105.54 Aligned_cols=387 Identities=10% Similarity=0.060 Sum_probs=191.1 Q ss_pred CchhhHHHHHhhhH----HHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHh Q lcl|Aclame:pro 1 MTDKLTLAVNHALN----DARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCW 76 (449) Q Consensus 1 ~~~~~~~~v~~~~~----~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~ 76 (449) +.+|++.-.+-..+ ....... ........|.. . ....++. ..++ +++.+.++|++.|.++- T Consensus 3 ~~~r~~~~~~~~~r~~~~~~~~~~~-~~~~~~~~g~~--~--------~~~~v~~---~~al-~~~~v~~~i~~ia~~ia 67 (432) T protein:vir:10 3 IVDSVKKFFNFEKRQTSQVIELNKD-DEKLLEWLGIS--P--------STISVKG---KNAL-KVATVFACIKILSESVS 67 (432) T ss_pred hHHHHHHhcCccccCcccccccCCc-hHHHHHHhCCC--c--------Cccccch---hhhh-ccHHHHHHHHHHHHhhc Confidence 33443311110000 0000000 00000011100 0 0011222 2344 46788999999999999 Q ss_pred cCCcEEecCCChhhH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEE Q lcl|Aclame:pro 77 QTNPEIIEGDDADDS-EDETSWEKKSKQ-VFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSV 153 (449) Q Consensus 77 r~~~~i~~~~~~~~~-~~~~~~e~~~~~-l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v 153 (449) +-.+.+...++.... .....+...++. =....-+..+.+.+.+. .++|-+++++.- ++.. .+..|.| T Consensus 68 ~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r-~~~G---------~~~~L~~ 137 (432) T protein:vir:10 68 KLPLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEF-DRKG---------KVQALWP 137 (432) T ss_pred cCceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEE-CCCC---------cEEEEEE Confidence 998887543322111 111112222210 00000112222333333 457777777653 2211 1344555 Q ss_pred eccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 154 SWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEG 229 (449) Q Consensus 154 ~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~ 229 (449) +....+++..- .+.. ..++...+|.+. ..+..+.++++.||||... .+.|.|.++.+...+.....+.. T Consensus 138 i~~~~v~v~~d-~~~~-~~~~~~~~y~~~-----~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~ 210 (432) T protein:vir:10 138 IDASKVTVYID-DVGL-LNSKTKMWYVVN-----TGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADK 210 (432) T ss_pred EcCceeEEEEc-Cccc-ccccceEEEEEe-----cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHH Confidence 55444443211 1111 122222344443 2334577999999999532 35699999999887766555544 Q ss_pred HHHHHHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccCCh- Q lcl|Aclame:pro 230 GSGESFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVADP- 303 (449) Q Consensus 230 ~~a~l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~lsgl- 303 (449) ..+.. +++..+. ..+++ .+...++..+++.+.+....++. ..+++..+-+|+.++.+.... T Consensus 211 ~~~~~-~~ng~~p~gil~~------------~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q 277 (432) T protein:vir:10 211 FINNF-YKQGLQVKGLVQY------------VGDLNEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQ 277 (432) T ss_pred HHHHH-HhccCCccEEEEc------------CCCCCHHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHH Confidence 43333 3332221 11111 12223444555555554443332 345666677899988776543 Q ss_pred -HHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---CCCC--c Q lcl|Aclame:pro 304 -TATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIID---AVAK--K 376 (449) Q Consensus 304 -~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~---~~~~--~ 376 (449) -+......++||.+.|||-.+|-+...+..++.+ -.+.||. ..+.|+.+.+..-+-..+.. ...+ + T Consensus 278 ~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~~~~-------~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~ 350 (432) T protein:vir:10 278 FLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFYT-------DTLQATLTMYEQEMTYKLFLDSELDKGFYS 350 (432) T ss_pred HHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcChhhcCCCcEE Confidence 4667778899999999998777444444444444 4556653 34567666666544433322 1233 4 Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--C--------CCCCC-----Ccchh Q lcl|Aclame:pro 377 AVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--E--------PLGEE-----DGDEE 441 (449) Q Consensus 377 ~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~--------~~~~~-----~~~ee 441 (449) .|.+..|...|.+++++ +.++++++| ++|++|+|+..+++|... . +.++. ...++ T Consensus 351 ~fd~~~l~~~d~~~~~~-------~~~~~~~~G---~~t~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~k~~~~ 420 (432) T protein:vir:10 351 KFNVDAILRADIKTRYE-------AYRTGIQGG---FLKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDT 420 (432) T ss_pred EeechhhhcCCHHHHHH-------HHHHHHhCC---CcCHHHHHHHhCCCCCCCCCeEeecccccchhhccccccCCCCC Confidence 45566888888888664 566778887 999999999999988521 1 11110 11111 Q ss_pred hcccccCC Q lcl|Aclame:pro 442 DKATDSAA 449 (449) Q Consensus 442 ~~~~~~~a 449 (449) ..+....+ T Consensus 421 ~~~~~~~~ 428 (432) T protein:vir:10 421 NGEVSKEG 428 (432) T ss_pred CCCCCCCC Confidence 11111111 No 24 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=99.67 E-value=2e-16 Score=106.61 Aligned_cols=379 Identities=10% Similarity=0.016 Sum_probs=190.6 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) ++++|--. + .. ... ..-..+... .+...+.. ....++.+ .+.+++.+.++|+.+|+++-+-.+ T Consensus 3 ~f~~lf~r-~--~~-~~~-~~~~~~~~~---~~~~~~~~-----~g~~v~~~----~al~~~~v~~~i~~Ia~~ia~~p~ 65 (414) T protein:vir:44 3 FFSGLFQR-K--SD-APV-TTPAELADA---IGLSYDTY-----TGKQISSQ----RAMRLTAVFSCVRVLAESVGMLPC 65 (414) T ss_pred hhhhhhcc-C--cc-Ccc-cchhhHhHh---hccCcccc-----CCceechh----hhhccHHHHHHHHHHHHHhccCce Confidence 22222100 0 00 000 000111111 01011100 01233332 456788899999999999998888 Q ss_pred EEecCCChhhHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccc Q lcl|Aclame:pro 81 EIIEGDDADDSE-DETSWEKKSK-QVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAG 157 (449) Q Consensus 81 ~i~~~~~~~~~~-~~~~~e~~~~-~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~ 157 (449) .+...++..... ....+...++ +=....-+..+.+.+.+. .++|.|++++. +++. .+..|.|+... T Consensus 66 ~~~~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~-~~~g----------~~~~L~~l~~~ 134 (414) T protein:vir:44 66 NLYHLNGSLKQRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKV-KAFG----------EVAELLPVDPG 134 (414) T ss_pred EEEEecCCceeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEE-eCCC----------cEEEEEEEcCc Confidence 875433221111 1111111111 000011112233333333 45677776664 3321 13344454444 Q ss_pred cCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 158 SLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEKVEGGSGES 234 (449) Q Consensus 158 ~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~~~~~~~a~l 234 (449) .+++.. + ..|.+ .|.+... .+....++++.|+||...+ ..|.|.++.+...+.....+..... . T Consensus 135 ~v~~~~---~----~~~~~-~y~~~~~----~g~~~~~~~~evih~~~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~-~ 201 (414) T protein:vir:44 135 CVVPKL---N----SSWEP-VYQVTFP----DGSTDVLSQEDIWHVRTLTLDGLVGLNPIAYAREAISLAAATEEHGA-R 201 (414) T ss_pred eEEEEE---C----CCCcE-EEEEEec----CceEEEEccccEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHH-H Confidence 433221 1 12333 4555421 2345679999999997533 4599999998877655444433332 2 Q ss_pred HHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccCC--hHHHH Q lcl|Aclame:pro 235 FLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVAD--PTATY 307 (449) Q Consensus 235 ~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~lsg--l~d~~ 307 (449) ++++.... ..++ ..+...++..+++.+.+....++. ..+++..+.+|+.++.+... +-+.. T Consensus 202 ~f~ng~~p~gil~------------~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~ 269 (414) T protein:vir:44 202 LFSNGAVTSGVLR------------TEQTLSDQAYERLKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETR 269 (414) T ss_pred HHhccCCCceEEE------------eCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChHHHHHHHHH Confidence 33332221 1111 112233455555655554433332 24556667789998876544 44667 Q ss_pred HHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC--CC--ceEEeCC Q lcl|Aclame:pro 308 NVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV--AK--KAVIWDD 382 (449) Q Consensus 308 ~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~--~~--~~~~f~p 382 (449) ....+.||.+.+||..+|-+...+..++.+ -.++||.. .+.|+.+.+..-+-..+.... .. +.|.+.. T Consensus 270 ~~~~~~Ia~~fgVpp~~l~~~~~~t~~n~e~~~~~~~~~-------~l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~ 342 (414) T protein:vir:44 270 KFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINY-------SLVPYLTRIEQRINTGLVRKSKQGVFYAKFNAGA 342 (414) T ss_pred HHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCCccccCceEEEEechh Confidence 778889999999999877554444444444 45666643 456777777655544443322 23 4555668 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCC--CC----------CCCCCC---cchhhccccc Q lcl|Aclame:pro 383 LNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDD--EE----------PLGEED---GDEEDKATDS 447 (449) Q Consensus 383 L~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~--~~----------~~~~~~---~~ee~~~~~~ 447 (449) |...|.++++ +++++++++| ++|++|+|+..+++|.. +. +.+... +.+...+.++ T Consensus 343 ll~~d~~~~~-------~~~~~~~~~G---~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~d~~ 412 (414) T protein:vir:44 343 LLRGDMKSRF-------EAYATGINWG---IYSPNDCRDLEDMNPRPGGDVYLTPMNMTTKPSDGSKAGKQKDNANADET 412 (414) T ss_pred hhccCHHHHH-------HHHHHHHhCC---CcCHHHHHHHhCCCCCCCcceecccccccccCCccccCCCCCCCCCCCCC Confidence 8888877765 4666678887 99999999999998752 11 111011 1111122222 Q ss_pred CC Q lcl|Aclame:pro 448 AA 449 (449) Q Consensus 448 ~a 449 (449) ++ T Consensus 413 ~~ 414 (414) T protein:vir:44 413 TS 414 (414) T ss_pred CC Confidence 22 No 25 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=99.65 E-value=5.1e-16 Score=104.42 Aligned_cols=370 Identities=13% Similarity=0.060 Sum_probs=180.5 Q ss_pred HHHHHHHhhc-Cccccc----ch----hccC-CcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHH Q lcl|Aclame:pro 23 MGLMVPTMGL-DNKRHS----AW----CEYG-FPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSE 92 (449) Q Consensus 23 ~~~~~~~~g~-~t~r~~----~~----~~~~-~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~ 92 (449) |+++.-..+. ...|.. .+ ..+. ....++.+ -+.+++.+.++|++.+.++-+-.+.+....+..... T Consensus 1 Mgl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~----~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~ 76 (409) T protein:vir:84 1 MSLFTRIFSGPSEERTLTKISGIPSPAEDWAMHGDRPGAN----SAMTLGAFYACVTLLADTVASLSIDAYRKKDNVRIP 76 (409) T ss_pred CchhhhhhcCCCcccccccccccccccchhhccCcccchh----hhhccHHHHHHHHHHHHhhhhCceEEEEecCCcccc Confidence 3332211111 111110 00 0000 01223322 233567789999999999988888775543222111 Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHH-hccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccc Q lcl|Aclame:pro 93 DETSWEKKSK-QVFTNRLWRSFAEADR-RRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINS 170 (449) Q Consensus 93 ~~~~~e~~~~-~l~~~~~~~~~~ea~~-~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s 170 (449) . ..+...++ +-....-+..+.+.+. .-.++|-++++|..++... .+..|.|+....+.+... .|.. T Consensus 77 ~-~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g---------~~~~L~~l~p~~v~v~~~-~~~~- 144 (409) T protein:vir:84 77 V-SPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEAN---------RPTAIMPIHPDCIHVTDA-KDED- 144 (409) T ss_pred c-chHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCC---------ceEEEEEEcCceeEEEEc-CCCc- Confidence 1 11111111 0000011122333333 3346788888776543221 123344444333332211 1211 Q ss_pred cccCCceeEEeeecccCCCccceEEccceeeeccCCC----CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhh Q lcl|Aclame:pro 171 KTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS----EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVN 246 (449) Q Consensus 171 ~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~----~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~ 246 (449) +. .+|.+. ...+..++++.||||...+ ..|.|-++.+...+.....+...... ++++.... T Consensus 145 ---~~-~~~~~~------~~~g~~~~~~dvih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~-~f~ng~~p---- 209 (409) T protein:vir:84 145 ---GD-WIEPVY------RIDGKVVPNHRIMHIKRYPVAGCALGMSPIEKAASAIGLGLAAERYGLR-WFRDSANP---- 209 (409) T ss_pred ---ce-EEEEEe------cCCceEEchhhEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHH-HHhcCCCc---- Confidence 11 111111 1124678999999996533 45889888888776655554333332 23332211 Q ss_pred hhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc-ceeecCCCceEEeecccC--ChHHHHHHHHHHHHhhhcCCce Q lcl|Aclame:pro 247 FEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND-VLMTTQGATVTPLVTSVA--DPTATYNVNLQTAAAGVDIPTR 323 (449) Q Consensus 247 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ed~~~~~~~ls--gl~d~~~~~~~~iaaas~IP~t 323 (449) ..+....+...++..+++.+......++.+ .+++..+.+|+.++.+.. .+-+......++||.+.+||-. T Consensus 210 -------~gil~~~~~l~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~ 282 (409) T protein:vir:84 210 -------SGILSSDADLTPDQVKQTQKQWIQSHHNRRLPAVMSAGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPH 282 (409) T ss_pred -------cEEEecCCCCCHHHHHHHHHHHHHHhccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHH Confidence 111111112233444444444333333333 455666678999887654 4455666788999999999987 Q ss_pred eeeccCc-ccc--ccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 324 ILIGNQQ-AER--SSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMG 399 (449) Q Consensus 324 ~L~Gqs~-gg~--~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A 399 (449) +| |... +.. +..+ -..+||.. .+.|+.+.++.-+-..+. ....+.|.++.|...|.++++ T Consensus 283 ~l-g~~~~~~~~~sn~e~~~~~f~~~-------~l~P~~~~ie~~l~~~L~-~g~~i~fd~~~l~~~d~~~~~------- 346 (409) T protein:vir:84 283 MI-GDVEKSTSWGTGIEEQGINFVRH-------TLLPWLRCIEQALDTFLP-RGQFVKFNVDGLMRGDVTARF------- 346 (409) T ss_pred Hh-CCCCCcccccchHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcc-CCCeEEEechhhhccCHHHHH------- Confidence 55 5433 222 2223 34566633 345655555544333331 112356777788888877654 Q ss_pred HHHHHHHHcCCccccCHHHHHHHhcCCCCCCC----------CCCC----CCcchhhcccccCC Q lcl|Aclame:pro 400 EINQTMLGSGDNPAFSREEIRTAAGYDNDDEE----------PLGE----EDGDEEDKATDSAA 449 (449) Q Consensus 400 ~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~----------~~~~----~~~~ee~~~~~~~a 449 (449) +++.+++++| ++|++|+|+..+++|..+- +.+. +..++.+...++.+ T Consensus 347 ~~~~~~~~~G---~~t~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g 407 (409) T protein:vir:84 347 TAYQMGLQNG---IWSVNEVRAWEDAPPIPEGDIHLQPMNFVPLGYVPPEEPAQEPQPNSATEG 407 (409) T ss_pred HHHHHHHhCC---CcCHHHHHHHhCCCCCCCcceeeecccccccccCCccccCcCCCCCCccCC Confidence 5667788888 9999999999999885321 0111 11111122222222 No 26 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=99.64 E-value=2e-15 Score=101.21 Aligned_cols=379 Identities=11% Similarity=0.004 Sum_probs=194.6 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) ++++|.-. +.... . .....+.... |.+ .+.. ....++. ..|.+++.+.++|+..|.++-+-.+ T Consensus 2 ~f~~~f~r-~~~~~---~-~~~~~~~~~~-~~~--~~~~-----~g~~v~~----~~~l~~~~v~~~i~~Ia~~iA~~p~ 64 (413) T protein:vir:48 2 FFSGLFQR-KSDAP---V-TTPAELAEAI-GLS--YDTY-----TGKRISS----QRAMRLTAVYSCVRVLAESVGMLPC 64 (413) T ss_pred ccchhhcc-CccCC---c-cchHHHHHhh-hcC--cccc-----cCceech----hhhhccHHHHHHHHHHHHhhhhCce Confidence 55555311 11000 0 0011222211 111 1110 1123333 2355678889999999999999888 Q ss_pred EEecCCChhhHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHh-ccccccEEEEEEecCCCcccccccccCceeeEEEeccc Q lcl|Aclame:pro 81 EIIEGDDADDSE-DETSWEKKSK-QVFTNRLWRSFAEADRR-RLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAG 157 (449) Q Consensus 81 ~i~~~~~~~~~~-~~~~~e~~~~-~l~~~~~~~~~~ea~~~-~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~ 157 (449) ++...++..... ....+...++ +=....-+..+.+.+.+ -.++|.|++++.-+.| .+..|.|+... T Consensus 65 ~~~~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~g-----------~~~~L~~l~~~ 133 (413) T protein:vir:48 65 SLYKISGTLKTRVVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKALG-----------EVVELLPIDPG 133 (413) T ss_pred EEEEecCCcceeecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeCCC-----------cEEEEEEEcCc Confidence 876443222111 1111222221 00000011122222222 2456777666542222 13345555444 Q ss_pred cCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 158 SLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEKVEGGSGES 234 (449) Q Consensus 158 ~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~~~~~~~a~l 234 (449) .+++. .|+ .+.| .|.+.. ..+....++++.|+||...+ ..|.|.++.+.+.+.....+...... T Consensus 134 ~v~~~---~~~----~~~~-~y~~~~----~~g~~~~~~~~evih~~~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~- 200 (413) T protein:vir:48 134 CVEPK---LNS----QWQP-VYQVTF----PDGSVDVLTQDEIWHVRTLTLDGLVGLNPIAYAREAISLAAATEEHGAR- 200 (413) T ss_pred eEEEE---EcC----CceE-EEEEEe----cCceEEEEccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHH- Confidence 44331 111 1233 344432 12334678999999986433 56999999999877655554333332 Q ss_pred HHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccCCh--HHHH Q lcl|Aclame:pro 235 FLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVADP--TATY 307 (449) Q Consensus 235 ~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~lsgl--~d~~ 307 (449) ++++.... ..++ ..+...++..+++.+.+....++. ..+++..+.+|+.++.+.... -+.. T Consensus 201 ~~~ng~~p~gil~------------~~~~~~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~ 268 (413) T protein:vir:48 201 LFGNGAVTSGVLR------------TEQKLTPDAYERLKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETR 268 (413) T ss_pred HHhccCCcceEEE------------eCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEeccCChhHHHHHHHH Confidence 33332211 1111 112223444555555544433332 235566677899988776543 5777 Q ss_pred HHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC--C--ceEEeCC Q lcl|Aclame:pro 308 NVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVA--K--KAVIWDD 382 (449) Q Consensus 308 ~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~--~--~~~~f~p 382 (449) ......||.+.+||-.+|-+...+..++.+ ....||.. .+.|+.+.+..-+-..+..+.+ + +.|.+.. T Consensus 269 ~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~~~f~~~-------~i~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~ 341 (413) T protein:vir:48 269 KFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINY-------SLVPYLTRIEQRINTGLVRESKQGKFYAKFNAGA 341 (413) T ss_pred HHHHHHHHHHhCCCHHHhCCCcCCCcccHHHHHHHHHHH-------HHHHHHHHHHHHHHhhccCccccCCeEEEEechh Confidence 788899999999998877654444444444 45666643 4567666665544444432221 2 5566668 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--C-------------CCCCCCcchhhccccc Q lcl|Aclame:pro 383 LNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--E-------------PLGEEDGDEEDKATDS 447 (449) Q Consensus 383 L~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~-------------~~~~~~~~ee~~~~~~ 447 (449) |...|.++++ +++++++++| ++|++|+|+..+++|... . ........++..+-++ T Consensus 342 l~~~d~~~~~-------~~~~~~~~~g---~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 411 (413) T protein:vir:48 342 LLRGDMKSRF-------EAYATGINWG---IYSPNDCRDLEDMNPRPGGDVYLTPMNMTTSPSAGDDNGKKKESGDADKT 411 (413) T ss_pred hhccCHHHHH-------HHHHHHHhCC---CcCHHHHHHHhCCCCCCCcceeeccccccccccccccCCCCCCCCCcccc Confidence 8777777655 5666788887 999999999999987532 1 0111222233344444 Q ss_pred CC Q lcl|Aclame:pro 448 AA 449 (449) Q Consensus 448 ~a 449 (449) +| T Consensus 412 ~~ 413 (413) T protein:vir:48 412 AS 413 (413) T ss_pred CC Confidence 44 No 27 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=99.63 E-value=1.1e-15 Score=102.61 Aligned_cols=375 Identities=11% Similarity=0.080 Sum_probs=187.3 Q ss_pred HHHHHHHhhcCccccc------------chhccCCc---ccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCC Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHS------------AWCEYGFP---ELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDD 87 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~------------~~~~~~~~---~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~ 87 (449) |+++...-+.. +|.+ ...-+|.. ..++. ..+| +++.++++|++.|.++-+-.+++....+ T Consensus 1 M~~~~~~f~~~-~r~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~---~~al-~~~~v~~~i~~ia~~ia~l~~~~~~~~~ 75 (429) T protein:vir:10 1 MDSVKKFFNFE-KRQTSQVIELNKDDEKLLEWLGISPSTISVKG---KNAL-KVATVFACIKILSESVSKLPLKIYQEDE 75 (429) T ss_pred Cchhhhhhccc-ccCcccccccCCChHHHHHHhcCCCCcceech---hhhh-ccHHHHHHHHHHHHhhccCceEEEEecC Confidence 22221100000 0000 00000000 11222 2344 4688899999999999998888754332 Q ss_pred hhh-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhh Q lcl|Aclame:pro 88 ADD-SEDETSWEKKSKQ-VFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEW 164 (449) Q Consensus 88 ~~~-~~~~~~~e~~~~~-l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~ 164 (449) ... ......+...++. =....-+..+.+.+.+. .++|-|++++.- ++.. .+..|.|+....+++..- T Consensus 76 ~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r-~~~G---------~~~~L~~i~~~~v~v~~~ 145 (429) T protein:vir:10 76 YGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEF-DRKG---------KVQALWPIDASKVTVYID 145 (429) T ss_pred CceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEE-CCCC---------cEEEEEEEcCceeEEEEc Confidence 221 1111112222210 00000111223333333 457777777654 2211 134455555444443211 Q ss_pred hccccccccCCceeEEeeecccCCCccceEEccceeeeccC----CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHh Q lcl|Aclame:pro 165 DTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD----YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAA 240 (449) Q Consensus 165 ~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~----~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~ 240 (449) +.....++...+|.+. ..+..+.++++.||||.. +...|.|.++.+...+.....+...... ++++.. T Consensus 146 --~~~~~~~~~~~~~~~~-----~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~-~~~ng~ 217 (429) T protein:vir:10 146 --DVGLLNSKTKMWYVVN-----TGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINN-FYKQGL 217 (429) T ss_pred --CcccccccceEEEEEc-----cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHH-HHhccC Confidence 1111222222344443 233456799999999953 2345999999998877655554433333 334332 Q ss_pred hh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcc----ccceeecCCCceEEeecccCC--hHHHHHHHHHH Q lcl|Aclame:pro 241 RQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRG----NDVLMTTQGATVTPLVTSVAD--PTATYNVNLQT 313 (449) Q Consensus 241 ~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~ed~~~~~~~lsg--l~d~~~~~~~~ 313 (449) .. ..+++ .+...++..+++.+.+....++ -..+++..+-+|+.++.+... +-+......++ T Consensus 218 ~~~~il~~------------~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~ 285 (429) T protein:vir:10 218 QVKGLVQY------------VGDLNEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQ 285 (429) T ss_pred CccEEEEc------------CCCCCHHHHHHHHHHHHHHhccccccCceeecCCCceEEEccCChhHHHHHHHHHHHHHH Confidence 21 11111 1122344445555554443332 224556667789988776543 44566788899 Q ss_pred HHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---CCCCc--eEEeCCCCCCC Q lcl|Aclame:pro 314 AAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIID---AVAKK--AVIWDDLNEQT 387 (449) Q Consensus 314 iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~---~~~~~--~~~f~pL~~~s 387 (449) ||.+.|||..+|-+...+..++.+ ..+.||. ..+.|+.+.+..-+-..+.. ...++ .|.+..|...| T Consensus 286 Ia~~fgVP~~~lg~~~~~~~sn~e~~~~~f~~-------~~l~P~~~~ie~~ln~kl~~~~~~~~g~~~~fd~~~ll~~d 358 (429) T protein:vir:10 286 IATAFGIKMHQLNDLSKATLNNIEQQQQQFYT-------DTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRAD 358 (429) T ss_pred HHHHhCCCHHHhCCCCCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCC Confidence 999999998777544444444444 4556653 34566666655544333322 12344 44455888888 Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--C--------CCCC-----CCcchhhcccccCC Q lcl|Aclame:pro 388 GTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--E--------PLGE-----EDGDEEDKATDSAA 449 (449) Q Consensus 388 ekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~--------~~~~-----~~~~ee~~~~~~~a 449 (449) .+++++ ++++++++| ++|++|+|+..+++|... . +.+. ....++..+....+ T Consensus 359 ~~~~~~-------~~~~~~~~G---~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~d~~~~~~~k~g~~~~~~~~~~ 425 (429) T protein:vir:10 359 IKTRYE-------AYRTGIQGG---FLKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDTNGEVSKEG 425 (429) T ss_pred HHHHHH-------HHHHHHhCC---CcCHHHHHHHhCCCCCCCcCeeeecccccchhhccccccCCCCCCCCCCCCC Confidence 887655 566778887 999999999999988532 1 1111 11111212222222 No 28 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=99.63 E-value=5.7e-15 Score=98.68 Aligned_cols=374 Identities=15% Similarity=0.083 Sum_probs=185.8 Q ss_pred HHHHHHHhhcCcccc------cchh-------ccCC----cccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecC Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRH------SAWC-------EYGF----PELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEG 85 (449) Q Consensus 23 ~~~~~~~~g~~t~r~------~~~~-------~~~~----~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~ 85 (449) |++.+..-|...+.. +.+. .++. ...++.. .+.++..+.++|+++++++-.-.+++... T Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~----~al~~~~v~~~i~~ia~~iA~lp~~~~~~ 76 (457) T protein:vir:62 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPH----DALQVSAVFASVRLLSETIATLPLSTYSK 76 (457) T ss_pred CchhhhhhccccccccccccccccccchhhhhhccccccCCceechH----HhhccHHHHHHHHHHHHhHhhCceEEEEe Confidence 343332222221110 0000 0000 0223332 24456788899999999999888887644 Q ss_pred CChhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhh Q lcl|Aclame:pro 86 DDADDS-EDETSWEKKSKQVFTNRLWRSFAEADRR-RLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAE 163 (449) Q Consensus 86 ~~~~~~-~~~~~~e~~~~~l~~~~~~~~~~ea~~~-~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~ 163 (449) .+.... .....+...+++-....-+..+.+.+.+ -.++|-|+++|.- ++. ++..|.++....+++.. T Consensus 77 ~~~~~~~~~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~-~~g----------~~~~l~~l~p~~v~v~~ 145 (457) T protein:vir:62 77 RGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRW-AGP----------NIAGLDVLDPTKIHVHM 145 (457) T ss_pred cCCccccccchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEe-CCC----------cEEEEEEEcCcceEEEE Confidence 322111 1111111111110000001122222222 3467778776632 221 23345555544444432 Q ss_pred hhccccccccCCce--eEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHHHHH Q lcl|Aclame:pro 164 WDTGINSKTYGQPK--LWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESFLK 237 (449) Q Consensus 164 ~~~Dp~s~~yg~P~--~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~ 237 (449) ...+. +.... .|.+. ..+.......++++.||||... .+.|.|.++.+...|.....+... ...+++ T Consensus 146 ~~~~~----~~~~~~~~y~~~--~~g~~~~~~~~~~~eiih~r~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~-~~~~f~ 218 (457) T protein:vir:62 146 VMVDG----LRRKVFEAYDID--ADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKY-GAHFFR 218 (457) T ss_pred eccCC----ccceeEEEEEEc--cCCceeEEEeeCccceEEecCCCCCCceecccHHHHHHHHHHHHHHHHHH-HHHHHh Confidence 22221 12222 23332 1111122246788999999643 246889888888766554444333 333344 Q ss_pred HHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccCC--hHHHHHHH Q lcl|Aclame:pro 238 NAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVAD--PTATYNVN 310 (449) Q Consensus 238 ~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~lsg--l~d~~~~~ 310 (449) +.... ..+++ .+...++..+++.+.+....++. ..+++..+-+|+.++.+... +-+..... T Consensus 219 ng~~p~gil~~------------~~~ls~e~~~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~ 286 (457) T protein:vir:62 219 NGAMPGAVVEV------------PGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQ 286 (457) T ss_pred ccCCcceEEEc------------CCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHH Confidence 43221 11111 12234555666666665554442 23566667789998876553 45666778 Q ss_pred HHHHHhhhcCCceeeeccCccccc---cch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC--CCC--ceEEeCC Q lcl|Aclame:pro 311 LQTAAAGVDIPTRILIGNQQAERS---STE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA--VAK--KAVIWDD 382 (449) Q Consensus 311 ~~~iaaas~IP~t~L~Gqs~gg~~---s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~--~~~--~~~~f~p 382 (449) ...||.+.+||-..| |...++.. ..+ -.+.||..+ +.|+.+.+..-+-..+... +.. +.|.+.. T Consensus 287 ~~~Ia~~fgVPp~~l-g~~~~~~~~~sn~eq~~~~f~~~~-------l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~ 358 (457) T protein:vir:62 287 VPEIARIFGVPPHLI-SDATNSTSWGSGLAEQNIAFTMFS-------LRPWLERIEAGFNRLLFAETADRFRFVKFNLDE 358 (457) T ss_pred HHHHHHHhCCCHHHc-CCCCCcccccchHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhcCccccCceEEEeechh Confidence 889999999997655 75554332 123 345566542 4666665554444333322 223 4566668 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC------------CCCCCc------------ Q lcl|Aclame:pro 383 LNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP------------LGEEDG------------ 438 (449) Q Consensus 383 L~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~------------~~~~~~------------ 438 (449) |...|.+++++. +.+++++| ++|++|+|+..+++|..+.. ...... T Consensus 359 l~~~d~~~r~~~-------~~~~~~~G---~~T~NE~R~~~gl~pi~~g~~D~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 428 (457) T protein:vir:62 359 IKRGAPKERMEL-------WSLGLQNG---IYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDP 428 (457) T ss_pred hhccCHHHHHHH-------HHHHHhCC---CcCHHHHHHHhCCCCCCCCCcceeeeccccccccccccccccCCCccCCC Confidence 888888877654 55577777 99999999999988753210 000000 Q ss_pred ------------------c-hhhcccccC Q lcl|Aclame:pro 439 ------------------D-EEDKATDSA 448 (449) Q Consensus 439 ------------------~-ee~~~~~~~ 448 (449) + ++.+..+.| T Consensus 429 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 457 (457) T protein:vir:62 429 PAEEPADDEEPDNAEGDPDEGETEDDDDA 457 (457) T ss_pred CccCCCCCCCCCCCCCCCccccccccccC Confidence 0 000000000 No 29 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=99.62 E-value=7.4e-16 Score=103.54 Aligned_cols=353 Identities=12% Similarity=0.049 Sum_probs=181.8 Q ss_pred HHHHHHHh-hcCccc------ccchhccCC----cccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhH Q lcl|Aclame:pro 23 MGLMVPTM-GLDNKR------HSAWCEYGF----PELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDS 91 (449) Q Consensus 23 ~~~~~~~~-g~~t~r------~~~~~~~~~----~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~ 91 (449) |++++... .....+ +..+....+ ...++.+ -|.+++...++|++.++++-+-.+++..... T Consensus 1 Mg~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~l~~~~v~~~i~~ia~~ia~~~~~~~~~~~---- 72 (383) T protein:vir:10 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSAL----SALQNTNVYSVINRIASDVSSAHFKTENTAT---- 72 (383) T ss_pred CCcccccccccccccccccccchhhhhhhccCccccccchh----HhhcchHHHHHHHHHHHhhccCceeecccch---- Confidence 22221110 000000 000100000 1123322 2445778899999999999998887742211 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccc Q lcl|Aclame:pro 92 EDETSWEKKSKQVFTNRLWRSFAEA-DRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINS 170 (449) Q Consensus 92 ~~~~~~e~~~~~l~~~~~~~~~~ea-~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s 170 (449) ...+++-....-+..+.+. ..+-.|+|-|++++. ++ .+ .+.|.+..++.+. .| T Consensus 73 ------~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~-~~--~~-----------~~~p~~~~~v~~~---~~--- 126 (383) T protein:vir:10 73 ------LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLV-GQ--NL-----------EHIPNSDVQINYL---PG--- 126 (383) T ss_pred ------hhhhhCCCCCCCHHHHHHHHHHHhhhcCCeEEEEE-cC--ce-----------eEeecCcceEEEE---Ec--- Confidence 0111110000111122222 222345787777653 22 11 1222222222211 11 Q ss_pred cccCCceeEEeeecccCCCccceEEccceeeeccCC------CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh-h Q lcl|Aclame:pro 171 KTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY------SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQ-L 243 (449) Q Consensus 171 ~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~------~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~-l 243 (449) +...+|.+... ..+..+.++++.|+||... ...|.|.++.+...+.....+....+.. +++.... . T Consensus 127 ---~~~~~~~~~~~---~~~~~~~~~~~evih~r~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~-f~ng~~~~~ 199 (383) T protein:vir:10 127 ---NMGIVYTVLES---NDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSA-MENQINPAG 199 (383) T ss_pred ---CCceEEEEEEc---CCceEEEEcccceEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHH-HhccCCcce Confidence 11233444322 1233567899999998532 2359999999888776666554444333 3332211 1 Q ss_pred hhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc---cceeecCCCceEEeecccCChH---HHHHHHHHHHHhh Q lcl|Aclame:pro 244 NVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN---DVLMTTQGATVTPLVTSVADPT---ATYNVNLQTAAAG 317 (449) Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~ed~~~~~~~lsgl~---d~~~~~~~~iaaa 317 (449) .+.+ .+ ....++..+++.+.+....++. ..++++.+.+|+.++.+..... +......++||.+ T Consensus 200 il~~---------~~--~~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~a 268 (383) T protein:vir:10 200 KLTI---------SN--YLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKA 268 (383) T ss_pred EEEe---------CC--CCCCHHHHHHHHHHHHHHhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHH Confidence 1111 11 0112445555555555444332 2466677889999988776554 4566678999999 Q ss_pred hcCCceeeeccCccccc--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHH Q lcl|Aclame:pro 318 VDIPTRILIGNQQAERS--STEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNA 395 (449) Q Consensus 318 s~IP~t~L~Gqs~gg~~--s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~ 395 (449) .|||-.+|-+...+..+ +.+..+.+|.. .+.|+.+.+..-+-..+.. .++.|.+.+|...|.+++| T Consensus 269 fgVPp~~lg~~~~~~~~~sn~eq~~~~~~~-------~l~P~~~~ie~~l~~~l~~--~~~~f~~~~l~~~d~~~~~--- 336 (383) T protein:vir:10 269 FGVPSDILGGGTSTESQHSNIDQIKATYLA-------NLNSYVNPIVDELRLKMNA--PDLELDIKDMLDVDDSILI--- 336 (383) T ss_pred hCCCHHHcCCccCCCCccccHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCC--ceEEeechhhhccCHHHHH--- Confidence 99998777655443332 22334434321 2567777666555445543 3689999999999988874 Q ss_pred HHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCCCCC---cchhhcccc Q lcl|Aclame:pro 396 KTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGEED---GDEEDKATD 446 (449) Q Consensus 396 ~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~~~~---~~ee~~~~~ 446 (449) +++.+++++| ++|++|+|+..+++|......+... ...+..+.| T Consensus 337 ----~~~~~~~~~G---~~t~nE~R~~lg~~p~~~~d~~~~~~~~~~~~gGd~e 383 (383) T protein:vir:10 337 ----NQVSNLAKSG---VLGAEQAQFILTRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) T ss_pred ----HHHHHHHhCC---CcCHHHHHHHhCCCcccCCcccccCCCcccCCCCCCC Confidence 4567788888 9999999999988775322211110 011111111 No 30 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=99.61 E-value=3.9e-15 Score=99.60 Aligned_cols=377 Identities=14% Similarity=0.077 Sum_probs=185.6 Q ss_pred HHHHHHHhhcCccc-------------ccchhccCC----cccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecC Q lcl|Aclame:pro 23 MGLMVPTMGLDNKR-------------HSAWCEYGF----PELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEG 85 (449) Q Consensus 23 ~~~~~~~~g~~t~r-------------~~~~~~~~~----~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~ 85 (449) |+|....-|.++.+ +.....++. ...++.+ .+.+++-+.++|+++++++-+-.+.+... T Consensus 1 Mg~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~----~al~~~~V~~~v~~Ia~~iA~lp~~~~~~ 76 (457) T protein:vir:13 1 MGFWSALFGRGHSPALDGIEARAWEPYDPSIYNLGAVAASGETVTPH----DALQVSAVFASVRLLSETIATLPLSTYSK 76 (457) T ss_pred CchhhhhhcccccccccccccccccccchHHHhhcccccCCceechH----HhhccHHHHHHHHHHHHhhccCceEEEEe Confidence 44333222222221 111111111 1233332 23346678899999999999888887543 Q ss_pred CChhhH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhh Q lcl|Aclame:pro 86 DDADDS-EDETSWEKKSKQVF-TNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAE 163 (449) Q Consensus 86 ~~~~~~-~~~~~~e~~~~~l~-~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~ 163 (449) ...... .....+-..++.-. .....+-+......-.++|-|+++|. .++.. +..|.++....+++.. T Consensus 77 ~~~~~~~~~~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna~~~i~-~~~g~----------~~~l~~l~p~~v~v~~ 145 (457) T protein:vir:13 77 RGGSRKEIVTPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVR-WQGPN----------IVGLDVLDPTKIHVHM 145 (457) T ss_pred cCCcccccccchHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEE-ecCCc----------EEEEEEEccCceEEEE Confidence 322111 11111222221100 00111112222223346787877764 33321 2334555444444432 Q ss_pred hhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 164 WDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNA 239 (449) Q Consensus 164 ~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~ 239 (449) ...+.. .+.....|++.. .+.......++++.|||+... .+.|.|.++.+...|.....+..... .++++. T Consensus 146 ~~~~~~--~~~~~~~y~~~~--~~~~~~~~~~~~~diih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~-~~f~ng 220 (457) T protein:vir:13 146 VMVDGL--RRKVFEAYDIDA--DGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGS-KFFANG 220 (457) T ss_pred ecCCCc--cceeEEEEEEec--CCceeeEEeeCccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHH-HHHhcC Confidence 211111 111112344431 111122345788999998653 35699999888877655444433322 233332 Q ss_pred hhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccCC--hHHHHHHHHH Q lcl|Aclame:pro 240 ARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVAD--PTATYNVNLQ 312 (449) Q Consensus 240 ~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~lsg--l~d~~~~~~~ 312 (449) ... ..+++ .+...++..+++.+.+....++. ..+++..+-+|+.++.+... +-+......+ T Consensus 221 ~~p~gil~~------------~~~ls~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~ 288 (457) T protein:vir:13 221 AMPGAVVEV------------PGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVP 288 (457) T ss_pred CCcceEEEc------------CCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHH Confidence 221 11111 12233555666666665554443 23566667789998876543 4466667889 Q ss_pred HHHhhhcCCceeeeccCccccc--c-ch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC--CC--ceEEeCCCC Q lcl|Aclame:pro 313 TAAAGVDIPTRILIGNQQAERS--S-TE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV--AK--KAVIWDDLN 384 (449) Q Consensus 313 ~iaaas~IP~t~L~Gqs~gg~~--s-~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~--~~--~~~~f~pL~ 384 (449) .||.+.+||-.+| |...++.. | .+ -...||.. .+.|+.+.+..-+-..+.... .. +.|.+..|. T Consensus 289 ~Ia~~fgVPp~~l-g~~~~~~~~~sn~eq~~~~f~~~-------tl~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~ 360 (457) T protein:vir:13 289 EIARIFGVPPHLI-SDATNSTSWGSGLAEQNIAFTMF-------SLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIK 360 (457) T ss_pred HHHHHhCCCHHHc-CCCCCcccccchHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCccccCceeEEeechhhh Confidence 9999999998755 75554332 1 23 23445443 346666666554444433221 22 556666888 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCC-------C-----CCCC---------------- Q lcl|Aclame:pro 385 EQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEE-------P-----LGEE---------------- 436 (449) Q Consensus 385 ~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~-------~-----~~~~---------------- 436 (449) ..+-+++++ ++.+++++| ++|++|+|+..+++|..+. + .... T Consensus 361 ~~D~~~r~~-------~~~~~~~~G---~~T~NE~R~~~gl~Pi~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 430 (457) T protein:vir:13 361 RGAPKERME-------LWSLGLQNG---IYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEVGEEPEPEPAPAPPAIEPPA 430 (457) T ss_pred ccCHHHHHH-------HHHHHHhCC---CcCHHHHHHHhCCCCCCCCcccceeeccccccccccccccccCCCCCCCCCc Confidence 888777655 455677787 9999999999999875321 0 0000 Q ss_pred -----CcchhhcccccCC Q lcl|Aclame:pro 437 -----DGDEEDKATDSAA 449 (449) Q Consensus 437 -----~~~ee~~~~~~~a 449 (449) +.+.++...+..+ T Consensus 431 ~~~~~~~~~~g~~d~~~~ 448 (457) T protein:vir:13 431 EEPDEEPEPEGKPDDEGA 448 (457) T ss_pred cccCCCCCCCCCCccccC Confidence 0000000000000 No 31 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=99.61 E-value=9.7e-16 Score=102.88 Aligned_cols=373 Identities=10% Similarity=0.052 Sum_probs=181.0 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCc-------c---cCCHHHHHHHHHcCchhHHHHhh Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFP-------E---LVTYENLYSLYRRGGIAHGAVEK 70 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~-------~---~~~~~~l~~~Y~~~~l~r~iVd~ 70 (449) |++|.+ .. ++.|++.....-..+.........+ . .+....+.. +..+..+.++|++ T Consensus 4 ~~~~~~--~~-----------~m~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~cI~~ 69 (413) T protein:vir:96 4 VSEIRK--DK-----------NLKFFNNKRSPTEESKAKDEIPKAPQVVMTLPNFFKELISDGYTK-LSDSPEVRMAVDC 69 (413) T ss_pred cchhhh--hh-----------cCCccccCCCcchhhhhhccccccccccccchhhHhhhccchhHH-HhhchHHHHHHHH Confidence 777765 21 1111111000000000000000000 0 000001112 3457889999999 Q ss_pred hHHHHhcCCcEEecCCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCce Q lcl|Aclame:pro 71 LVGKCWQTNPEIIEGDDADDSEDETSWEKKSK-QVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGL 148 (449) Q Consensus 71 pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~-~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l 148 (449) .|.+.-+-.+.+...++.........+...++ +=....-+..+.+.+.+. .++|.|++++.-+ +.. ..+ T Consensus 70 ia~~ia~~~~~~~~~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~-~~g--------~~~ 140 (413) T protein:vir:96 70 IADLVSNMTIQLMQNGETGDKRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQ-VSG--------DKI 140 (413) T ss_pred HHHhhccCceEEEEecCCCccccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEc-CCC--------Cce Confidence 99999998888754432222111112222111 000001122233333333 4567777766542 211 112 Q ss_pred eeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC-----CCCcchhHHHHHHHHHH Q lcl|Aclame:pro 149 QKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY-----SEDAIGFLEPAYNAFVS 223 (449) Q Consensus 149 ~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~-----~~~G~s~l~~~~~~l~~ 223 (449) ..|.|+....+++. .++ +. ..|.+.. .+..+.++.||||... .+.|.|.++.+...+.. T Consensus 141 ~~L~~l~~~~v~~~---~~~-----~~-~~y~~~~-------~~~~~~~~evih~k~~~~~~~~~~G~s~~~~~~~~i~~ 204 (413) T protein:vir:96 141 IGLTPISPYKVTFN---VSD-----DD-LDYSITF-------DNKEYDPSTLLHFVLNPSIERPFIGTGYKVALKDIVGN 204 (413) T ss_pred EEEEEecCceeEEE---EcC-----Ce-EEEEEee-------cCcEEchhhEEEEeccCCCCCccccccHHHHHHHHHHH Confidence 33444443333321 111 11 3455531 1346788999998632 23599999998887766 Q ss_pred HHHHhhHHHHHHHHHHhh-hhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcc---ccc-eeecCC-CceEEe- Q lcl|Aclame:pro 224 LEKVEGGSGESFLKNAAR-QLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRG---NDV-LMTTQG-ATVTPL- 296 (449) Q Consensus 224 ~~~~~~~~a~l~~~~~~~-~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~l~~~~-ed~~~~- 296 (449) ...+...... ++++... ...++ ..+...++..+++.+.+....++ .+. +++..+ .+++.+ T Consensus 205 ~~~~~~~~~~-~~~ng~~p~gil~------------~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~~~~~~~~~~ 271 (413) T protein:vir:96 205 LKQASVTKKG-FMASEYMPNLIVS------------VDSDSDELSDEEGRENFEEMYLKRKEAGKPWIIPEGMVNVQQIK 271 (413) T ss_pred HHHHHHHHHH-HHhccCCccEEEE------------eCCCCCHHHHHHHHHHHHHHhcCccccCceeeecCCcccccccc Confidence 5555443333 2333221 11111 11222344455555554443333 222 344333 344433 Q ss_pred eccc--CChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC Q lcl|Aclame:pro 297 VTSV--ADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV 373 (449) Q Consensus 297 ~~~l--sgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~ 373 (449) +.+. ..+-+........||.+.+||..+| |.. .+++ ...+||.. .+.|+.+.+..-+-..+.+.. T Consensus 272 ~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~l-g~~----~~~~~~~~~~~~~-------~l~P~~~~ie~~ln~~ll~~~ 339 (413) T protein:vir:96 272 PLTLNDLAINDAVTLDKKTVAGIFGVPAFLL-GVG----TYNKDEFNNFINT-------KIMSIAQVIQQTYNKLIVEED 339 (413) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhCCCHHHc-CCC----cchHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCCCC Confidence 2232 3345666677889999999998766 421 1233 34555543 366777766665554454333 Q ss_pred CCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCC----------CCCCCCcchhhc Q lcl|Aclame:pro 374 AKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEE----------PLGEEDGDEEDK 443 (449) Q Consensus 374 ~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~----------~~~~~~~~ee~~ 443 (449) ..+.|.+..|...|.+++++ ++.+++++| ++|++|+|+..|++|...- +.+......... T Consensus 340 ~~~~fd~~~ll~~d~~~~~~-------~~~~~~~~G---~~t~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~ 409 (413) T protein:vir:96 340 MYFSLNPRSLYNYSLTEMVS-------AGAQMTQLN---ALRRNEFRNWVGMPPDAEMDDLLVLENYLQQKDLVNQKKLI 409 (413) T ss_pred cEEEEechhhhccCHHHHHH-------HHHHHHhCC---CcCHHHHHHHhCCCCCCCcceeeecccccchhhcccccCCC Confidence 34566667888888777664 566788887 9999999999999986421 111111222233 Q ss_pred cccc Q lcl|Aclame:pro 444 ATDS 447 (449) Q Consensus 444 ~~~~ 447 (449) ..|| T Consensus 410 ~~dt 413 (413) T protein:vir:96 410 QDET 413 (413) T ss_pred CCCC Confidence 4444 No 32 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=99.61 E-value=1.1e-15 Score=102.63 Aligned_cols=386 Identities=12% Similarity=0.088 Sum_probs=195.8 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHh-hcCcccccchhccCC-----cccCCHHHHHHHHHcCchhHHHHhhhHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTM-GLDNKRHSAWCEYGF-----PELVTYENLYSLYRRGGIAHGAVEKLVGK 74 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-g~~t~r~~~~~~~~~-----~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d 74 (449) |.+.|--++.-+.+..+. .+...+. ......+..|..|.- ...++.+ -+.+++-+.++|++.+++ T Consensus 1 ~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~v~~~----~al~~~~V~~~i~~ia~~ 71 (434) T protein:vir:43 1 MSKSLGKVLSSATSAPRS-----SLFGWGGKTIRLTDGAFWSQFLGRESSSGKKVTVD----KAMKLSAVWACVRLISTS 71 (434) T ss_pred Cccchhhhhhhcccccch-----hhhcccccccccCchHHHHHHhcCCccCCceechh----hhhccHHHHHHHHHHHHh Confidence 999887555433322211 1110000 000000111222210 1223322 234677788999999999 Q ss_pred HhcCCcEEecCCChhhH-H-HHHHHHHHHH-HHHHHHHHHHHHHHHHh-ccccccEEEEEEecCCCcccccccccCceee Q lcl|Aclame:pro 75 CWQTNPEIIEGDDADDS-E-DETSWEKKSK-QVFTNRLWRSFAEADRR-RLVGRYAGILLHIRDEKDWNLPATKGRGLQK 150 (449) Q Consensus 75 ~~r~~~~i~~~~~~~~~-~-~~~~~e~~~~-~l~~~~~~~~~~ea~~~-~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~ 150 (449) +-.-.+.+...+..... + ....+-..++ +=....-+..+.+.+.+ -.++|-++++|.-++|+ +.. T Consensus 72 ia~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~~~G~-----------~~~ 140 (434) T protein:vir:43 72 VAGLPLGVYERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRRAAGR-----------PAA 140 (434) T ss_pred hhhCceEEEEEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeCCCc-----------EEE Confidence 99888887543221111 0 1111111111 00000111122222222 24678777666432221 234 Q ss_pred EEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 151 VSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEKV 227 (449) Q Consensus 151 i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~~~ 227 (449) |.|+....+++. .|. .|.+.+|... +.+..+.++++.|+||.+.+ ..|.|.++.+.+.+.....+ T Consensus 141 L~~l~p~~v~~~---~~~----~g~~~y~~~~-----~~g~~~~~~~~eVih~~~~~~dg~~G~spi~~~~~~i~~~~~~ 208 (434) T protein:vir:43 141 LDFLLPSRVDLE---CDE----NGRLKYFYTT-----KKGARREIERTNMLHIPAFTLDGRIGLSAIRYGVDVFGSVMSA 208 (434) T ss_pred EEEEcCcceEEE---EcC----CCeEEEEEEe-----cCceEEEEccccEEEecCcCCCCccccCHHHHHHHHHHHHHHH Confidence 445544444432 121 1444443332 22345789999999986543 45889999988877555544 Q ss_pred hhHHHHHHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc---cceeecCCCceEEeecccC-- Q lcl|Aclame:pro 228 EGGSGESFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN---DVLMTTQGATVTPLVTSVA-- 301 (449) Q Consensus 228 ~~~~a~l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~ed~~~~~~~ls-- 301 (449) ....+. ++++..+. ..+++ .+...++..+++.+.+....... ..+++..+.+|+.++.+.. T Consensus 209 ~~~~~~-~f~ng~~~~gil~~------------~~~l~~e~~~~~r~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~ 275 (434) T protein:vir:43 209 EDAANG-TFKNGLLPTVAFKV------------DRILQPAQREEFREYVKSVSGAMNSGRSPVLEQGITPETIGINPVDA 275 (434) T ss_pred HHHHHH-HHhccCCcceEEec------------CCCCCHHHHHHHHHHHHHhcCccccCCccccCCCceEEEccCChhHH Confidence 433333 33332221 11111 12223444555555555443322 2456667778999887654 Q ss_pred ChHHHHHHHHHHHHhhhcCCceeeeccCcccc-ccc--h-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC--C Q lcl|Aclame:pro 302 DPTATYNVNLQTAAAGVDIPTRILIGNQQAER-SST--E-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVA--K 375 (449) Q Consensus 302 gl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~-~s~--e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~--~ 375 (449) .+-+......++||.+.|||-.+| |...++. ..+ + -...||. ..+.|+.+.++.-+-..+....+ + T Consensus 276 q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~~~s~~e~~~~~f~~-------~~L~P~~~~ie~~ln~kL~~~~~~~~ 347 (434) T protein:vir:43 276 QLLETREHGVIEICRWFGVPPWMI-GQTDKGSNWGTGLEQQMLAFLT-------FSISSITNQIQQCVNKRLLTAPERIR 347 (434) T ss_pred HHHHHHHHHHHHHHHHhCCCHHHh-CCCcCCccccchHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCChhhhcC Confidence 456778888999999999997655 6544332 222 2 2344553 34677777777666555544332 3 Q ss_pred c--eEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCC----------CCCCCCcchhhc Q lcl|Aclame:pro 376 K--AVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEE----------PLGEEDGDEEDK 443 (449) Q Consensus 376 ~--~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~----------~~~~~~~~ee~~ 443 (449) + .|.+..|...|.+++ ++++.+++++| ++|++|+|+..+++|...- +.+...+..... T Consensus 348 ~~~~fd~~~llr~d~~~r-------~~~~~~~~~~G---~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~ 417 (434) T protein:vir:43 348 YYAEFSLEGFLKADSAGR-------AAWYSTMAQNG---FMTRNEGRRKENLPELPGGDILTVQSNLVPIDQLGQSNKSQ 417 (434) T ss_pred ceEEEechhhhccCHHHH-------HHHHHHHHhCC---CcCHHHHHHHhCCCCCCCCCeEeeccCccchhhhhccCCCc Confidence 4 444557877787765 56667788887 9999999999999885321 111111111111 Q ss_pred ccccCC Q lcl|Aclame:pro 444 ATDSAA 449 (449) Q Consensus 444 ~~~~~a 449 (449) +.+.+. T Consensus 418 ~~~~~~ 423 (434) T protein:vir:43 418 AVRAAL 423 (434) T ss_pred chhhhh Confidence 111111 No 33 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=99.60 E-value=3.2e-15 Score=100.08 Aligned_cols=374 Identities=11% Similarity=0.033 Sum_probs=187.5 Q ss_pred HHHHHHHhhcCcccccc-------hh-ccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHH-H Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHSA-------WC-EYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSE-D 93 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~~-------~~-~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~-~ 93 (449) |++..-..+....+... +. -+|. ...+.. . ..+++-+.++|+++|+++-+-.+++...++....+ . T Consensus 1 MG~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~---~-al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~~~~~~ 75 (411) T protein:vir:81 1 MGWWSRLTRFFRPRNETVDMTNPLLLQWLGV-DPDTPR---N-QLSEATYFACLKILSESLGKLPLKMYQKTERGIVKSD 75 (411) T ss_pred CchHHHHHhhccCcccccccchHHHHHHhcC-cccChh---h-hhccHHHHHHHHHHHHhHhhCceeEEEecCCceeeec Confidence 22222211211111110 00 0111 112221 1 22456788999999999999888875432221111 1 Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHh-ccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhcccccc Q lcl|Aclame:pro 94 ETSWEKKSK-QVFTNRLWRSFAEADRR-RLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSK 171 (449) Q Consensus 94 ~~~~e~~~~-~l~~~~~~~~~~ea~~~-~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~ 171 (449) ...+...++ +=....-+..+.+.+.+ -.++|.|++++.-+ +.. +..|.++....+++.. +.+.. - T Consensus 76 ~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~-~g~----------~~~l~~l~~~~v~~~~-~~~~~-~ 142 (411) T protein:vir:81 76 REELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYS-GPQ----------LQALWILPSQYVTIVV-DDRGL-L 142 (411) T ss_pred ccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCc----------eEEEEEECCceEEEEE-cCccc-c Confidence 111112221 00000111223333333 34678788777543 222 2334444444443321 11111 0 Q ss_pred ccCCceeEEeeecccCCCccceEEccceeeeccC----CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhh Q lcl|Aclame:pro 172 TYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD----YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNF 247 (449) Q Consensus 172 ~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~----~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~ 247 (449) .+....+|.+... ..+..+.++++.||||.. ....|.|.+..+.+.+.....+....... +++.... T Consensus 143 ~~~~~~~~~~~~~---~~g~~~~~~~~eiih~k~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~-f~ng~~p----- 213 (411) T protein:vir:81 143 GEKNAIWYRYNDP---YDGKMYVFRNDEILHFKTSVTFDGITGLSVRDVLKHTVDGALESQKFMNNL-YKTGLTG----- 213 (411) T ss_pred cccceEEEEEEec---CCceEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH-HhccCCC----- Confidence 0111234444321 123456789999999963 23569999999888776555554333332 2332111 Q ss_pred hhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccC--ChHHHHHHHHHHHHhhhcCC Q lcl|Aclame:pro 248 EKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVA--DPTATYNVNLQTAAAGVDIP 321 (449) Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~ls--gl~d~~~~~~~~iaaas~IP 321 (449) ..+....+...++..+++.+.+....++. ..+++..+-+|+.++.+.. .+-+......++||++.+|| T Consensus 214 ------~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP 287 (411) T protein:vir:81 214 ------KAVLEYTGDLNQEARDRLVKGFEQFANGSKNAGKIIPVPLGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIK 287 (411) T ss_pred ------ceEEEeCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCC Confidence 11111112223444455555554443332 2355666778999877654 34567778899999999999 Q ss_pred ceeeeccCc-cccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC---CC--CceEEeCCCCCCCHHHHHHH Q lcl|Aclame:pro 322 TRILIGNQQ-AERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA---VA--KKAVIWDDLNEQTGTEKLTN 394 (449) Q Consensus 322 ~t~L~Gqs~-gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~---~~--~~~~~f~pL~~~sekE~Aei 394 (449) ..+| |-.. +..++.+ -..+||.. .+.|+.+.+..-+-..+... +. .+.|.+..|...|.+++ T Consensus 288 p~~l-g~~~~~t~~n~e~~~~~f~~~-------~l~P~~~~ie~~l~~~ll~~~~~~~~~~~~fd~~~ll~~d~~~~--- 356 (411) T protein:vir:81 288 PNQI-NDYEKSSYASAEAQNLAFYVD-------TLLYVLKQYEEEITYKILSNDLISQGHYFKFNVNVILRADIKTQ--- 356 (411) T ss_pred HHHh-CCCCCCCchhHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCChhhcCCCcEEEeechhhhccCHHHH--- Confidence 8766 5433 3333334 34455533 45666666655443333221 22 35666777888887776 Q ss_pred HHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--CCC-----C--CCCcchhhccccc Q lcl|Aclame:pro 395 AKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--EPL-----G--EEDGDEEDKATDS 447 (449) Q Consensus 395 ~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~~~-----~--~~~~~ee~~~~~~ 447 (449) ++++++++++| ++|++|+|+..+++|.+. ... - +...+...+..|+ T Consensus 357 ----~~~~~~~~~~g---~~t~NE~R~~~gl~p~~ggD~~~~~~n~~pl~~~~~~~~kgGd~ 411 (411) T protein:vir:81 357 ----MDSLSTAVQNG---IMTPNEARDYLDMPADDYGNNLMANGNYIPLSMLGANYGKGGDS 411 (411) T ss_pred ----HHHHHHHHhCC---CcCHHHHHHHhCCCCCCCCCeeeeccCccchhhhhhhhccCCCC Confidence 45667788887 999999999999988632 111 0 1111223344444 No 34 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=99.59 E-value=7.4e-15 Score=98.05 Aligned_cols=375 Identities=14% Similarity=0.108 Sum_probs=188.0 Q ss_pred HHHHHHHhhcCcc----cccchhcc------CCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNK----RHSAWCEY------GFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSE 92 (449) Q Consensus 23 ~~~~~~~~g~~t~----r~~~~~~~------~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~ 92 (449) +-+.|+-+=.... ++.....+ |.+..-...-.-..|..++.+.++|++.+++.-+-.+.+...++....+ T Consensus 1 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~acV~~IA~~iA~lp~~l~~~~~~~~~~ 80 (518) T protein:vir:78 1 MLLANGQTLSAPAMAELSPQMQDSYYYAPAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGDTETE 80 (518) T ss_pred CcccCceeeccchhhhhhhhhhhcccccceeceecccccchhhHHhhhhHHHHHHHHHHHHhhccCceEEEEEcCCcccc Confidence 1111110000000 00000111 1111111122234578889999999999999998888875433222111 Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhcc Q lcl|Aclame:pro 93 DETSWEKKSKQVFTN----RLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTG 167 (449) Q Consensus 93 ~~~~~e~~~~~l~~~----~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~D 167 (449) .. ...+..|..+ .-...|.+.+... .++|-+++++.- +... .+..|.++....+++.. | T Consensus 81 ~~---~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r-~~~G---------~~~~L~~l~p~~Vtv~~---~ 144 (518) T protein:vir:78 81 EH---DTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQK-NKSG---------TPEKLMPMHPSRVAIKR---N 144 (518) T ss_pred cc---chHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEE-cCCC---------cEEEEEEECCCceEEEE---c Confidence 11 1111122221 0111233333333 456877777654 2211 23445555544444322 1 Q ss_pred ccccccCCceeEEeeecccCCCccceEEccceeeeccCCC----CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh- Q lcl|Aclame:pro 168 INSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS----EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQ- 242 (449) Q Consensus 168 p~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~----~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~- 242 (449) . .+-+..|++.... +.....+.++.+.||||.... ..|.|.++.+.+.|.....+....+ -++++.... T Consensus 145 ~----~~~~~~y~~~~~~-~~~~~~~~~~~~eIiHir~~~~dg~~~G~Spi~~~~~~i~~~~aa~~~~~-~~f~Ng~~p~ 218 (518) T protein:vir:78 145 S----RTGRYEYYFQAGA-GVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATA-AMWKNAGRPN 218 (518) T ss_pred C----CCCEEEEEEEecC-CccceeEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHH-HHHhcCCCcc Confidence 1 1223455554222 112234678899999986532 3588999988887765555443333 333443221 Q ss_pred hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccC--ChHHHHHHHHHHHHh Q lcl|Aclame:pro 243 LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVA--DPTATYNVNLQTAAA 316 (449) Q Consensus 243 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~ls--gl~d~~~~~~~~iaa 316 (449) ..+++ .+...++..+++.+.+....++. ..+++..+-+|+.++.+.. .+-+......+.||. T Consensus 219 gvl~~------------~~~ls~e~~~~~k~~~~~~~~G~~nag~~~vL~~G~~~~~l~~~~~d~q~le~r~~~~~eIa~ 286 (518) T protein:vir:78 219 LVLRH------------EKRLSPEAQQRLREQFDRAHAGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCG 286 (518) T ss_pred EEEec------------CCCCCHHHHHHHHHHHHHHhcCcccCCceeEcCCCceEEeccCChhHHHHHHHHHHHHHHHHH Confidence 11111 12223455556655555444432 2356666778999887654 345666678899999 Q ss_pred hhcCCceeeeccCc-cccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC---CCCceEEeCCCCCCCHHHH Q lcl|Aclame:pro 317 GVDIPTRILIGNQQ-AERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA---VAKKAVIWDDLNEQTGTEK 391 (449) Q Consensus 317 as~IP~t~L~Gqs~-gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~---~~~~~~~f~pL~~~sekE~ 391 (449) +.+||-.+| |... +..++.+ -...||.. .+.|+...+..-+-..+... ...+.|....|...+.+++ T Consensus 287 afgVPp~~l-g~~~~st~sn~e~~~~~f~~~-------tL~P~~~~ie~eln~~L~~~~~~~~~~~fd~~~Llr~D~~~r 358 (518) T protein:vir:78 287 VYDIAPPIV-HILDRATFSNISAQMRAFYRD-------TMAIPIARIQSAMDKYVGQYWVRKNRMKFDIDDVIQPDWEAK 358 (518) T ss_pred HhCCCHHHh-ccCCCCCchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcccccCcceEEeechhhhccCHHHH Confidence 999998766 5433 3233333 34556543 25565555554443333321 2234555568888887765 Q ss_pred HHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCCC-----------------CCcchhhcccccCC Q lcl|Aclame:pro 392 LTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGE-----------------EDGDEEDKATDSAA 449 (449) Q Consensus 392 Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~~-----------------~~~~ee~~~~~~~a 449 (449) ++++.+++++| .+|++|+|+..+++|.+++..+. ..+++.....++++ T Consensus 359 -------~~~~~~~~~~G---~lT~NE~R~~~gl~pie~~~gD~~~v~~n~~pl~~~~~~~~~g~~~~~~~~~~~ 423 (518) T protein:vir:78 359 -------SESTQKMVNSG---VATPNEGREIMGLPRSDDPKADELYANSALQPLGATPDGAVEGEEAPAPKRPAS 423 (518) T ss_pred -------HHHHHHHHhCC---CcCHHHHHHHhCCCCCCCCCCceeeecccceecccccccccCCCCCCCCCCCCc Confidence 45567778887 99999999999998864321110 00011011111111 No 35 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=99.59 E-value=3.1e-15 Score=100.16 Aligned_cols=359 Identities=11% Similarity=0.020 Sum_probs=182.2 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHH-HHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMG-LMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTN 79 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~ 79 (449) |.+++...-+.... . ....+. +.....+.. -...++.. .|.++..++++|+.+|+++-+-. T Consensus 3 ~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~-----------~~~~v~~~----~al~~~~v~~~i~~ia~~ia~~p 64 (385) T protein:vir:10 3 LLTPRNFNKRKAKN-M--VYPSNPAFFTTTVGGM-----------QLSYVSAL----SALQNTNVYSVINRIASDVASAH 64 (385) T ss_pred cccchhcccccccc-c--ccccchhhhhhhcccc-----------CccccCHH----HhhccHHHHHHHHHHHHHHhhCc Confidence 22322111110000 0 000000 000000000 01223332 24456788999999999999998 Q ss_pred cEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccEEEEEEecCCCcccccccccCceeeEEEecccc Q lcl|Aclame:pro 80 PEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRL-VGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGS 158 (449) Q Consensus 80 ~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~r-l~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~ 158 (449) +++.... ....+++=....-+..+.+.+.+.. ++|-|++++. ++. ..+.|.+... T Consensus 65 ~~v~~~~----------~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~-r~~-------------~~~~p~~~~~ 120 (385) T protein:vir:10 65 FKTENTA----------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLV-GQN-------------LEHIPNSDVQ 120 (385) T ss_pred eeeeccc----------hhhhhhcCCCCCCHHHHHHHHHHHhhhcCCeEEEEE-cCc-------------eeEeecCCce Confidence 8874211 1111211111112233444444444 4677777653 221 1122222222 Q ss_pred CChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC------CCCcchhHHHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 159 LKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY------SEDAIGFLEPAYNAFVSLEKVEGGSG 232 (449) Q Consensus 159 i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~------~~~G~s~l~~~~~~l~~~~~~~~~~a 232 (449) +.+ ..|.. ..+|.+... ..+..+.++++.||||... ...|.|.++.+...+.....+..... T Consensus 121 v~~---~~~~~------~~~~~~~~~---~~~~~~~~~~~eiihik~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~ 188 (385) T protein:vir:10 121 INY---LPGNM------GIVYTVLES---NDRPQMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNM 188 (385) T ss_pred EEE---EEcCC------ceEEEEEEc---CCceEEEEccccEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHH Confidence 221 11211 233444322 2234567999999998642 23589999998887765555443333 Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHhhhccC-hHHHHHHHHHHHHHHhccc---cceeecCCCceEEeecccCChH---H Q lcl|Aclame:pro 233 ESFLKNAARQLNVNFEKEIDFTNLASLYGVS-IDELQDKFNEVAGEINRGN---DVLMTTQGATVTPLVTSVADPT---A 305 (449) Q Consensus 233 ~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~l~~~~ed~~~~~~~lsgl~---d 305 (449) .. +++.... ..+....+.. .++..+++.+.+....++. ..++++.+.+|+.++.+..... + T Consensus 189 ~~-~~ng~~~-----------~gil~~~~~~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e 256 (385) T protein:vir:10 189 SA-MENQINP-----------AGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALAD 256 (385) T ss_pred HH-HhccCCc-----------ceEEEeCCCCCCHHHHHHHHHHHHHHhCccccCCccccCCCceEEecCCChhHHHHHHH Confidence 33 3332211 1111111111 2344555555555544432 2356667788999888766544 4 Q ss_pred HHHHHHHHHHhhhcCCceeeeccCcccc--ccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCC Q lcl|Aclame:pro 306 TYNVNLQTAAAGVDIPTRILIGNQQAER--SSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDL 383 (449) Q Consensus 306 ~~~~~~~~iaaas~IP~t~L~Gqs~gg~--~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL 383 (449) ......++||.+.+||-.+|-+...+.. ++-|..+.+|.. .+.|+.+.+..-+-..+.. .++.|.+.+| T Consensus 257 ~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~~~~~-------~l~P~~~~ie~~l~~~l~~--~~~~f~~~~l 327 (385) T protein:vir:10 257 NSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLA-------NLNSYVNPIVDELRLKMNA--PDLELDIKDM 327 (385) T ss_pred HHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCC--ceEEeechhh Confidence 4566688999999999766665443322 222444444421 2456666555444444433 3688888999 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCC-------CCCcchhhcc Q lcl|Aclame:pro 384 NEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLG-------EEDGDEEDKA 444 (449) Q Consensus 384 ~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~-------~~~~~ee~~~ 444 (449) ...|.+++ +++++++++.| ++|++|+|+..+++|..+...+ .....|+..+ T Consensus 328 l~~d~~~~-------~~~~~~~~~~G---~~T~NE~R~~~g~~p~p~~~~~~~~~~~~~~~~g~~~dn 385 (385) T protein:vir:10 328 LDVDDSAL-------INQVSNLAKSG---VLGAEQAQFILTRSGFLPDNLPEFKPLTTQVKGGDEGDN 385 (385) T ss_pred hccCHHHH-------HHHHHHHHhCC---CcCHHHHHHHhCCCccCCCCCccccCcccccCCCCCCCC Confidence 99998876 56677788888 9999999999888775322211 1111121111 No 36 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=99.58 E-value=1.5e-14 Score=96.42 Aligned_cols=407 Identities=11% Similarity=0.045 Sum_probs=200.0 Q ss_pred CchhhHHHHHhhhHH--HHHHHHHHHHHHHHhhcCc----ccccchhccCC-------cccCCHHHHHHHHHcCchhHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALND--ARMARARMGLMVPTMGLDN----KRHSAWCEYGF-------PELVTYENLYSLYRRGGIAHGA 67 (449) Q Consensus 1 ~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~g~~t----~r~~~~~~~~~-------~~~~~~~~l~~~Y~~~~l~r~i 67 (449) |.++|+.+...+.+. .......+.......|.+. .+-..+-..+. ...++ ...|.+++.++++ T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~----~~~a~~~~~v~~~ 78 (466) T protein:vir:81 3 LIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPSTELAPDTFVGLA----TQAYQANGPVFAC 78 (466) T ss_pred hhHHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhccccccccCccccccc----hhhhhccHHHHHH Confidence 788888655433211 1111111211111111110 00000000000 01122 2346778899999 Q ss_pred HhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhccccccEEEEEEecCCCccc Q lcl|Aclame:pro 68 VEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFT--------NRLWRSFAEADRRRLVGRYAGILLHIRDEKDWN 139 (449) Q Consensus 68 Vd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~--------~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~ 139 (449) |+++++++-+-.+.+....+....+.... .+-.|+. ..+++.+... -.++|-|++++.- ++...- T Consensus 79 i~~Ia~~ia~lp~~~~~~~~~~~~~~~~~---~~~~L~~~PN~~~t~~~f~~~l~~~---lll~Gnay~~i~r-~~~g~l 151 (466) T protein:vir:81 79 MLVRQLVFSSVRFRWQRLRDGKPSDTFGS---RDLQILETPWKGGTTQDMLSRMIQD---ADLAGNSYWTIVD-GEFVRM 151 (466) T ss_pred HHHHHHhhccCceEEEEecCCceeecccc---HHHHHhhCCCCCCCHHHHHHHHHHH---HHhcCCeEEEEEe-cCcccc Confidence 99999999999988765433221111111 1111221 1233333322 2457777777653 222111 Q ss_pred ccccccCceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC-----CCCcchhH Q lcl|Aclame:pro 140 LPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY-----SEDAIGFL 214 (449) Q Consensus 140 ~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~-----~~~G~s~l 214 (449) .|... .....+.++....+++.. ..|. + ....|++...........+.++++.||||... ...|.|.+ T Consensus 152 ~~~~~-g~~~~l~~l~~~~v~~~~-~~~~----~-~~~~y~~~~~~~~~~~~~~~~~~~dviHir~~~~~~d~~~G~s~i 224 (466) T protein:vir:81 152 RPDWV-DVVVEERMVRGGRGELGG-GQLG----W-RKVGYLYTEGGRQSGNESVGFLAEDVVHFAPIPDPLASYRGMSWL 224 (466) T ss_pred ccccC-cceeEEEEecCcceEEEE-cCCC----c-eEEEEEEEecCcccccceeeeccccEEEEcCCCCcccccccccHH Confidence 11111 234556665554444321 1111 1 11233333211111233567899999998642 24589999 Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCC Q lcl|Aclame:pro 215 EPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQG 290 (449) Q Consensus 215 ~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ 290 (449) +.+.+.+.....+... ...++++.... ..+....+...++..+++.+.+....++. ..+++..+ T Consensus 225 ~~~~~~i~~~~a~~~~-~~~~f~ng~~p-----------~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g 292 (466) T protein:vir:81 225 TPILREIRADQAMSKH-QAKFFDNGATV-----------NLVIKHNPMADPAAVKKWADEVNSKHAGVDNAWKNLNLYPG 292 (466) T ss_pred HHHHHHHHHHHHHHHH-HHHHHhcCCCc-----------ceEEecCCCCCHHHHHHHHHHHHHHhcCccccccceEcCCC Confidence 9888776554444333 22333332211 11111112223445555555554433332 23566667 Q ss_pred CceEEeecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCccccccc----h-hHHHHHHHHHHHHHhhhHHHHHHHHH Q lcl|Aclame:pro 291 ATVTPLVTSVAD--PTATYNVNLQTAAAGVDIPTRILIGNQQAERSST----E-DQKYFNARCQSRRVDLSFEIEDFCDK 363 (449) Q Consensus 291 ed~~~~~~~lsg--l~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~----e-D~~nyyd~I~~~Qe~~~~p~~~~l~~ 363 (449) -+|+.++.+... +-+......+.||.+.+||- .++|.+.+...++ | -.++||.. .+.|+.+.++. T Consensus 293 ~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp-~~lG~~~~~~~st~sn~eq~~~~f~~~-------tl~P~~~~ie~ 364 (466) T protein:vir:81 293 ADADVVGSNLQEIDFKNVRGGGETRIAAAAGVPP-VIVGLSEGLAAATYSNYGQARRRLADG-------TAHPLWQNLSG 364 (466) T ss_pred ceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCH-HHcccccCCCccccccHHHHHHHHHHH-------HHHHHHHHHHH Confidence 789998876543 44667788999999999995 5666554433322 3 34556632 45666666665 Q ss_pred HHHHhcCCCCC--Cc--eEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCC------CCCCCCC Q lcl|Aclame:pro 364 LIELKIIDAVA--KK--AVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYD------NDDEEPL 433 (449) Q Consensus 364 l~~~~~~~~~~--~~--~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~------~~~~~~~ 433 (449) -+-..+..+.+ .+ .|...+|...+.++++++.+++++.+..++++| ++++|+|...... +.+..+. T Consensus 365 ~l~~~L~~~~~~~~~~~~f~~~~llr~d~~~r~~~~~~~~~~~~~~~~~g----~t~nE~r~~~~~gd~~~~~~~~~~~~ 440 (466) T protein:vir:81 365 CIGHVMPDMGPDVRLWYDADDVPFLREDEKDAADIQKVRAETINTLITAG----YEPESVVAAVNSGDLRLLKHTGLTSV 440 (466) T ss_pred HHHhhcCCcccCcceEEEecchhhhccCHHHHHHHHHHHHHHHHHHHHcC----CChhhccccccCCccccccCCCcchh Confidence 55444443322 23 444568999999999999999999999999987 3899999653210 0000000 Q ss_pred CCCCcc-hhhccccc--CC Q lcl|Aclame:pro 434 GEEDGD-EEDKATDS--AA 449 (449) Q Consensus 434 ~~~~~~-ee~~~~~~--~a 449 (449) +..... ......++ .. T Consensus 441 ~~~~~~~~~~~~~~~~~~~ 459 (466) T protein:vir:81 441 QLLPPGVSASASSDTPTSG 459 (466) T ss_pred hhcccccccccCCCCcccC Confidence 000000 00000000 00 No 37 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=99.58 E-value=1e-14 Score=97.30 Aligned_cols=365 Identities=12% Similarity=0.035 Sum_probs=174.1 Q ss_pred HHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChh-hHHHHHHHHHHHHHHHHH-------------HHHHHHHH-HHH Q lcl|Aclame:pro 54 LYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDAD-DSEDETSWEKKSKQVFTN-------------RLWRSFAE-ADR 118 (449) Q Consensus 54 l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~-~~~~~~~~e~~~~~l~~~-------------~~~~~~~e-a~~ 118 (449) |..+-+.|+.+++||++.+++...-++.+....+.. .......++.....++.. ..+..+.+ .+. T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~~~ 80 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTAWT 80 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHHHH Confidence 777778899999999999999999998875322111 111112222222222111 11122222 333 Q ss_pred hccccccEEEEEEec-CCCccc-ccccccC------ceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCc Q lcl|Aclame:pro 119 RRLVGRYAGILLHIR-DEKDWN-LPATKGR------GLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSS 190 (449) Q Consensus 119 ~~rl~Gga~i~i~i~-d~~~~~-~Pl~~~~------~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~ 190 (449) .-.++|-|++.+.-+ .|+... .||++.. +..++.. +........+..++...++.....+.+.....+..+ T Consensus 81 ~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (467) T protein:vir:31 81 DYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKRMDERGFVQL-LEEKEKYFGVAGDRYQTNGNGDLDPVFVDADDGSTG 159 (467) T ss_pred HHHhcCCeEEEEEECCCCcEEEEEEeCCceeEeeeecceeEee-cCCceeeEEeccccceeecccceeeeeeeecccccc Confidence 345677777766542 232211 2333321 0000000 000000000111111122222222222222223344 Q ss_pred cceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh-hhhhhhhhHHHHHhhhccChH Q lcl|Aclame:pro 191 RRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLN-VNFEKEIDFTNLASLYGVSID 265 (449) Q Consensus 191 ~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~-~~~~~~~~~~~l~~~~~~~~~ 265 (449) ..+.+.++.||||... ...|.|.+..+...+.....+. .....++++....-. +.+. .+...+ T Consensus 160 ~~~~~~~~diih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~-~~~~~~f~ng~~p~gil~~~-----------~~~l~~ 227 (467) T protein:vir:31 160 TSVSNPANELIFKRNHSPLYPHYGAPDIIPAVKTIRGDSAAQ-DYNIDFFENDGVPRIAIIVK-----------GAELTE 227 (467) T ss_pred ceeEeccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHH-HHHHHHHhccCCCceEEEec-----------CcCCCH Confidence 5677899999998643 3579999999888765433332 223333444322111 1110 011223 Q ss_pred HHHHHHHHHHHHHhc---------------cccceeecCCCceEEeeccc----------CChHHHHHHHHHHHHhhhcC Q lcl|Aclame:pro 266 ELQDKFNEVAGEINR---------------GNDVLMTTQGATVTPLVTSV----------ADPTATYNVNLQTAAAGVDI 320 (449) Q Consensus 266 ~~~~~~~~~~~~~~~---------------~~~~~l~~~~ed~~~~~~~l----------sgl~d~~~~~~~~iaaas~I 320 (449) +..+++.+.+....+ +...+++..+.++..+...+ +.+.+.......+||++.|| T Consensus 228 e~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgV 307 (467) T protein:vir:31 228 KGREEMRNLIEDNNEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDV 307 (467) T ss_pred HHHHHHHHHHHhhhcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHHHHHHHHHHHHhCC Confidence 333444333322111 11123333344444433322 23345666678889999999 Q ss_pred CceeeeccCc-ccccc-ch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC-----CCCceEEeCCCCCCCHHHHH Q lcl|Aclame:pro 321 PTRILIGNQQ-AERSS-TE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA-----VAKKAVIWDDLNEQTGTEKL 392 (449) Q Consensus 321 P~t~L~Gqs~-gg~~s-~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~-----~~~~~~~f~pL~~~sekE~A 392 (449) |-..| |... +..++ .+ -..+||.. .+.|+.+.+...+-..+... ...+.|.+..|...+.++++ T Consensus 308 pp~~l-G~~~~~~~~s~~e~~~~~f~~~-------~l~P~~~~ie~~ln~~l~~~~~~~~~~~i~f~~~~l~~~d~~~~~ 379 (467) T protein:vir:31 308 PPVIA-GVVESGAFSTDAEEQRKEFAEE-------TIQPKQHDFGELLYELVHKQGLDAPDWTIEFELAKPDTKLQDVEI 379 (467) T ss_pred CHHHc-ccCCCCCcccCHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcchhhccCCceEEEecchhhccCHHHHH Confidence 97655 7543 33333 23 35566543 35666666665544443221 12356777899888988777 Q ss_pred HHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCC---------------C-CCcchh--------------- Q lcl|Aclame:pro 393 TNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLG---------------E-EDGDEE--------------- 441 (449) Q Consensus 393 ei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~---------------~-~~~~ee--------------- 441 (449) ++ ..+++++| ++|++|+|+..|++|..++... . ..++.. T Consensus 380 ~~-------~~~~~~~G---~~T~NE~R~~~Gl~pi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (467) T protein:vir:31 380 AS-------QRVQAMQG---LLTVNELRDEFGFEPFPEEHVYGGETLVAEVTGGSGPGGGIGDQIEQLVEDRADEIIDSY 449 (467) T ss_pred HH-------HHHHHhCC---CcCHHHHHHHhCCCCCCcccccCCcccccccccccCCCCcccCcCCCCCCCcccchHhhh Confidence 65 44566777 9999999999999885432110 0 000000 Q ss_pred hcccccCC Q lcl|Aclame:pro 442 DKATDSAA 449 (449) Q Consensus 442 ~~~~~~~a 449 (449) +.+.++.. T Consensus 450 ~~~~~~~~ 457 (467) T protein:vir:31 450 QADLETEQ 457 (467) T ss_pred hhccccch Confidence 01111111 No 38 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=99.56 E-value=1e-14 Score=97.29 Aligned_cols=379 Identities=12% Similarity=0.123 Sum_probs=188.0 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCC-----cccCCHHHHHHHHHcCchhHHHHhhhHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGF-----PELVTYENLYSLYRRGGIAHGAVEKLVGKC 75 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~-----~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~ 75 (449) |.+|++....-... ..+.. +.. . +..+..+..++. ...++.+ .+.++..+.++|++.+++. T Consensus 9 ~~~~~~~~~~~~~~-~~~~~-~~~-~-------~~~~~~~~~~~~~~s~~g~~v~~~----~al~~~~V~~~i~~Ia~~i 74 (432) T protein:vir:10 9 LLGQLKAMFVPPDP-VDIGG-GQT-F-------TPVNATARDLGIIISDTGAAVNAD----AIMRLDAVAACVKLVSQAI 74 (432) T ss_pred hhhhhHhhcCCccc-ccccc-ccc-c-------ccCcchhhhhcccccccCcccchh----hhhcchHHHHHHHHHHHhh Confidence 77777644432111 00000 000 0 000000011111 1223332 3456788999999999999 Q ss_pred hcCCcEEecCCChhhHH-HHHHHHHHHH-H---HH-HHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCcee Q lcl|Aclame:pro 76 WQTNPEIIEGDDADDSE-DETSWEKKSK-Q---VF-TNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQ 149 (449) Q Consensus 76 ~r~~~~i~~~~~~~~~~-~~~~~e~~~~-~---l~-~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~ 149 (449) -+-.+.+...+.....+ ....+-..++ + .. ...+|+.+...+ .|+|.|++++.-.+|+ +. T Consensus 75 a~lp~~~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l---ll~Gnay~~~~~~~g~-----------~~ 140 (432) T protein:vir:10 75 AAMPLTMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRL---LLDGTAYVRKVVTDGR-----------IE 140 (432) T ss_pred hhCceeEEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHH---hhcCCeEEEEEecCCc-----------EE Confidence 88888774332211111 1111111111 0 00 012334333322 4678887766443322 23 Q ss_pred eEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHHH Q lcl|Aclame:pro 150 KVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEK 226 (449) Q Consensus 150 ~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~~ 226 (449) .|.++....+++. .|. .|. ..|.+... .+..+.++++.|+||...+ ..|.|.++.+.+.+..... T Consensus 141 ~L~~l~~~~v~v~---~~~----~g~-~~y~~~~~----~g~~~~~~~~~iih~~~~~~dg~~G~spi~~~~~~i~~~~~ 208 (432) T protein:vir:10 141 SLQYLANDRLTIT---TDT----KGN-TAYRYRRT----DGQMIDIPKQQIWKIMGYSLDGENGLSAIRYGAQIFGTAIA 208 (432) T ss_pred EEEEEcCCceEEE---EcC----CCc-EEEEEEec----CceEEEEcCccEEEecCCCCCCcccccHHHHHHHHHHHHHH Confidence 3444444444332 121 133 34555422 2345688999999986543 3588999988877655444 Q ss_pred HhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeecccC--ChH Q lcl|Aclame:pro 227 VEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSVA--DPT 304 (449) Q Consensus 227 ~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~ls--gl~ 304 (449) +..... -++++....- .+....+...++..+++.+......+.-..+++..+.+|+.++.+.. .+- T Consensus 209 ~~~~~~-~~f~ng~~~~-----------gil~~~~~l~~e~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~l 276 (432) T protein:vir:10 209 AEAQAA-RAFRNGQLQS-----------VYYQIDRFLTDDQYDSFAKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLL 276 (432) T ss_pred HHHHHH-HHHhcCCCcc-----------eEEecCCCCCHHHHHHHHHHHhhhhhCCCceecCCCceEEEccCChHHHHHH Confidence 433322 2344432211 11111122234555555554443333334566667789999887654 345 Q ss_pred HHHHHHHHHHHhhhcCCceeeeccCc-cccc---cch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC--CC-- Q lcl|Aclame:pro 305 ATYNVNLQTAAAGVDIPTRILIGNQQ-AERS---STE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV--AK-- 375 (449) Q Consensus 305 d~~~~~~~~iaaas~IP~t~L~Gqs~-gg~~---s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~--~~-- 375 (449) +.......+||.+.+||-.+| |... |..+ +.| -.+.||.. .+.|+.+.++.-+-..+.... .. T Consensus 277 e~~~~~~~~Ia~afgVPp~~l-g~~~~~t~~~~sn~e~~~~~f~~~-------tl~P~~~~ie~~ln~kL~~~~~~~~~~ 348 (432) T protein:vir:10 277 QSRQYSVESICRFFGVPPSMI-GHSSAGTTSWGSGIESQQLGFLSM-------TLSPWLRRIEQSIALNLLSPAERRRYF 348 (432) T ss_pred HHHHHHHHHHHHHhCCCHHHc-CCccCCcccccchHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhcCccccCceE Confidence 667788899999999998665 5433 3221 122 23455532 345666655554433333222 23 Q ss_pred ceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC--C--C----CCCcchhhccccc Q lcl|Aclame:pro 376 KAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP--L--G----EEDGDEEDKATDS 447 (449) Q Consensus 376 ~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~--~--~----~~~~~ee~~~~~~ 447 (449) +.|.+..|...|.++|++ ++.+++++| ++|++|+|+..+++|.++.. . . ..+.-.++...+. T Consensus 349 ~~fd~~~ll~~d~~~r~~-------~~~~~~~~G---~~T~NE~R~~~glppi~g~~~~~~~~~~~~pl~~~~~~~~~~~ 418 (432) T protein:vir:10 349 ADFDTSALLRADSAARSS-------YYSQLVNNG---LMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDSIGLQASPEP 418 (432) T ss_pred EEeechhhhccCHHHHHH-------HHHHHHhCC---CCCHHHHHHHhCCCCCCCCcceEeecCcccchhhhcccCCCCC Confidence 445555888888777654 566678887 99999999999998864321 0 0 0000000100010 Q ss_pred --CC Q lcl|Aclame:pro 448 --AA 449 (449) Q Consensus 448 --~a 449 (449) .+ T Consensus 419 ~~~~ 422 (432) T protein:vir:10 419 ASGL 422 (432) T ss_pred CCCC Confidence 00 No 39 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=99.56 E-value=1.3e-14 Score=96.65 Aligned_cols=369 Identities=10% Similarity=-0.001 Sum_probs=183.7 Q ss_pred HHHHHHHhhcCcccccchhc---------cCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHH- Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHSAWCE---------YGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSE- 92 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~~~~~---------~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~- 92 (449) |.|....-+.-+.+-..|.. ......++.+. + .++.-++++|++.+.+.-.-.+.+...++..... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~---a-l~~~~v~~~i~~ia~~ia~lp~~~~~~~~~g~~~~ 76 (419) T protein:vir:57 1 MFIPQFWKGRPSENRVNWQVVPGGMRSSSSQAGVIITPET---A-LALSAVRACVTLLAESVAQLPCVLYRRTENGGREI 76 (419) T ss_pred CcchhhhccCCccccccccccccccccccccCCceechHH---h-hccHHHHHHHHHHHHhhccCceEEEEEcCCCceec Confidence 22222221111110000000 00012333332 2 3456789999999999988887775433222111 Q ss_pred -HHHHHHHHHH-HHHH----HHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhc Q lcl|Aclame:pro 93 -DETSWEKKSK-QVFT----NRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDT 166 (449) Q Consensus 93 -~~~~~e~~~~-~l~~----~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~ 166 (449) ....+...++ +-.. ..+|+.+... --++|-|++++.- ++.. .+..|.|+....+++.. T Consensus 77 ~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~---l~l~Gna~~~i~r-~~~G---------~~~~L~pl~~~~v~v~~--- 140 (419) T protein:vir:57 77 AFDHPLHDLIRYQPNRKDTAFEYHEQTQGV---LGLEGNSYSLIDR-NGRG---------DITELIPINPHKVIVLK--- 140 (419) T ss_pred cccchHHHHHhhccccCCCHHHHHHHHHHH---HhhcCCeEEEEEE-CCCC---------cEEEEEEEcCcceEEEE--- Confidence 1111212221 1111 1233333322 2456777666643 2211 23445555544444321 Q ss_pred cccccccCCceeEEeeecccCCCccceEEccceeeeccCC---CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh- Q lcl|Aclame:pro 167 GINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY---SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQ- 242 (449) Q Consensus 167 Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~---~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~- 242 (449) + ..|.| +|++. ..+..++.+.|+|+... ...|.|.++.+...+.....+..... .++++.... T Consensus 141 ~----~~g~~-~y~~~-------~~~~~~~~~~vih~r~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~-~~f~ng~~p~ 207 (419) T protein:vir:57 141 G----PDGMP-YYDIP-------SIGEILPMRMVHHIKSFSLDGYIGTSPIQTNPDVLGLGIAVEQHAA-QVFARGTTMS 207 (419) T ss_pred C----CCceE-EEEEc-------CCceEEchhhEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHH-HHHHccCCcc Confidence 1 11333 46653 12356788888888643 34589999988876654444433322 233332221 Q ss_pred hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcc----ccceeecCCCceEEeecccC--ChHHHHHHHHHHHHh Q lcl|Aclame:pro 243 LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRG----NDVLMTTQGATVTPLVTSVA--DPTATYNVNLQTAAA 316 (449) Q Consensus 243 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~ed~~~~~~~ls--gl~d~~~~~~~~iaa 316 (449) ..++... ...+...++..+++.+......++ -..+++..+-+|+.++.+.. .+-+......+.||+ T Consensus 208 gil~~~~--------~~~~~~~~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~ 279 (419) T protein:vir:57 208 GVIERPF--------EAKAIASQAAVDAILAKWTERYGGVRNAFSVGMLQEGMTYKQLSQDNEKAQLLQSRQYTVNEVCR 279 (419) T ss_pred EEEEecC--------cCCcccCHHHHHHHHHHHHHHhccccccccceecCCCceEEEcCCChhhHHHHHHHHHHHHHHHH Confidence 1111100 001122344445554444332222 23455666778988887654 345677788899999 Q ss_pred hhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC--CCc--eEEeCCCCCCCHHHH Q lcl|Aclame:pro 317 GVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV--AKK--AVIWDDLNEQTGTEK 391 (449) Q Consensus 317 as~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~--~~~--~~~f~pL~~~sekE~ 391 (449) +.|||...|-+...+..++.| -.+.||.. .+.|+.+.+..-+-..+..+. .++ .|.+..|...|.+++ T Consensus 280 ~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~-------~l~P~~~~ie~~l~~~ll~~~~~~~~~i~fd~~~ll~~d~~~~ 352 (419) T protein:vir:57 280 LYKVPPHMIQDLQKSTNNNIEHQGLQYVIY-------TMLAILKRHESAMMRDLLLPSERRDFYIEFNVSSLLRGDQKSR 352 (419) T ss_pred HhCCCHHHhCCCCCCccccHHHHHHHHHHH-------HHHHHHHHHHHHHHhhccCccccCCeEEEEechhhhccCHHHH Confidence 999998777554444444444 45666644 356777766655544443322 244 455558888888877 Q ss_pred HHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--CC-CC-----CCCcch-----hhcccccCC Q lcl|Aclame:pro 392 LTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--EP-LG-----EEDGDE-----EDKATDSAA 449 (449) Q Consensus 392 Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~~-~~-----~~~~~e-----e~~~~~~~a 449 (449) ++ ++++++++| ++|++|+|+..+++|... .. .+ .+...+ .++..+..+ T Consensus 353 ~~-------~~~~~~~~G---~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 413 (419) T protein:vir:57 353 YE-------SYALGRQWG---WLSVNDIRRMENLTPIPGGDKYLTPLNMVDSKALTGIGKATPQQLKDIEA 413 (419) T ss_pred HH-------HHHHHHhCC---CcCHHHHHHHhCCCCCCCcCeeeeccccccccccccccCCCcccCcchhh Confidence 65 555677887 999999999999987532 11 00 000011 111111111 No 40 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=99.56 E-value=9e-15 Score=97.59 Aligned_cols=379 Identities=12% Similarity=0.134 Sum_probs=188.4 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCC-----cccCCHHHHHHHHHcCchhHHHHhhhHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGF-----PELVTYENLYSLYRRGGIAHGAVEKLVGKC 75 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~-----~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~ 75 (449) |.+|++..-.-... ..+.. +..+. + .+..+..++. ...++.+ .+.++..+.++|+++++++ T Consensus 9 ~~~~~~~~~~~~~~-~~~~~-~~~~~-~-------~~~~~~~~~~~~~~~g~~v~~~----~a~~~~aV~~~v~~Ia~~i 74 (432) T protein:vir:97 9 LLGQLKAMFVPPDP-VDIGG-GQTFT-P-------VNATARDLGIIISDTGAAVNAD----AIMRLDAVAACVKLVSQAV 74 (432) T ss_pred hhhhhHhhcCCccc-ccccc-ccccc-c-------CchhhhhhcccccccCcccchH----hhhcchHHHHHHHHHHHhh Confidence 67776633321110 00000 00000 0 0000001111 1223332 3456788999999999999 Q ss_pred hcCCcEEecCCChhhHH-HHHHHHHHHH-H---HH-HHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCcee Q lcl|Aclame:pro 76 WQTNPEIIEGDDADDSE-DETSWEKKSK-Q---VF-TNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQ 149 (449) Q Consensus 76 ~r~~~~i~~~~~~~~~~-~~~~~e~~~~-~---l~-~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~ 149 (449) -+-.+.+....++...+ ....+-..++ + .- ...+|+.+...+ .++|-|++++.-++|+ +. T Consensus 75 a~lp~~~y~~~~~g~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~l---ll~Gnay~~~~~~~g~-----------~~ 140 (432) T protein:vir:97 75 AAMPLMMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRL---LLDGTAYVRKVVTDGR-----------IE 140 (432) T ss_pred ccCceEEEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHH---hhcCCeEEEEEecCCc-----------EE Confidence 98888775432211111 1111111111 0 00 012333333222 4567777666443322 22 Q ss_pred eEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHHH Q lcl|Aclame:pro 150 KVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEK 226 (449) Q Consensus 150 ~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~~ 226 (449) .|.++....+++. .|. .|. ..|++... .+..+.++++.|+|+.+.+ ..|.|.++.+.+.+..... T Consensus 141 ~L~~l~p~~v~v~---~~~----~g~-~~y~~~~~----~g~~~~~~~~~iih~r~~~~dg~~G~spi~~~~~~i~~~~a 208 (432) T protein:vir:97 141 SLQYLANDRLTIT---TDT----KGN-TAYRYRRT----DGQMIDIPRQQIWKIMGYSLDGENGLSAIRYGAQIFGTAIA 208 (432) T ss_pred EEEEEcCcceEEE---EcC----CCc-EEEEEEec----CceEEEEccccEEEecCcCCCCcccccHHHHHHHHHHHHHH Confidence 3444444433332 111 233 34555421 2345678999999986533 4588999988877655444 Q ss_pred HhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeecccCC--hH Q lcl|Aclame:pro 227 VEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSVAD--PT 304 (449) Q Consensus 227 ~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~lsg--l~ 304 (449) +....+. ++++..+. ..+....+...++..+++.+......+.-..+++..+.+|+.++.+... +- T Consensus 209 ~~~~~~~-~f~ng~~~-----------~gil~~~~~l~~e~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~ 276 (432) T protein:vir:97 209 AEAQAAR-AFRNGQLQ-----------SVYYQIDRFLTDDQYDSFSKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLL 276 (432) T ss_pred HHHHHHH-HHhccCCc-----------ceeEecCCCCCHHHHHHHHHHHhhhhcCCCceecCCCceEEEccCChhHHHHH Confidence 4333332 33332221 1111111223345555565554433333345667777899999877554 45 Q ss_pred HHHHHHHHHHHhhhcCCceeeeccCccccc----cchh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC--CC-- Q lcl|Aclame:pro 305 ATYNVNLQTAAAGVDIPTRILIGNQQAERS----STED-QKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV--AK-- 375 (449) Q Consensus 305 d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~----s~eD-~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~--~~-- 375 (449) +......++||.+.+||-.+| |....+.. +.|+ ...||.. .+.|+.+.++.-+-..+..+. .. T Consensus 277 e~~~~~~~~Ia~~fgVPp~~l-g~~~~~t~~~~s~~e~~~~~f~~~-------tl~P~~~~ie~~ln~kLl~~~e~~~~~ 348 (432) T protein:vir:97 277 QSRQYSVESICRFFGVPPSMI-GHSSAGTTSWGSGIESQQLGFLTM-------TLSPWLRRIEQSIALNLLTPAERRRYF 348 (432) T ss_pred HHHHHHHHHHHHHhCCCHHHc-CCcCCcccccchhHHHHHHHHHHH-------HHHHHHHHHHHHHhhhccCccccCceE Confidence 667788999999999998666 54332221 1122 2344432 346666666554444443322 23 Q ss_pred ceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCC----C----CCCcchhhccccc Q lcl|Aclame:pro 376 KAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPL----G----EEDGDEEDKATDS 447 (449) Q Consensus 376 ~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~----~----~~~~~ee~~~~~~ 447 (449) +.|.+..|...|.++++ +++.+++++| ++|++|+|+..+++|.++... . ..+.-.++...+. T Consensus 349 ~~fd~~~llr~d~~~r~-------~~~~~~~~~G---~~T~NE~R~~~glpp~~g~~~~~~~~~~~~pl~~~~~~~~~~~ 418 (432) T protein:vir:97 349 ADFDTSALLRADSAARS-------SYYSQLVNNG---LMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDSIGLQASPEP 418 (432) T ss_pred EEeechhhhccCHHHHH-------HHHHHHHhCC---CCCHHHHHHHhCCCCCCCCcceEeecccccchhhhcccCCCCC Confidence 55666688888888765 4566788887 999999999999988643210 0 0000001111110 Q ss_pred CC Q lcl|Aclame:pro 448 AA 449 (449) Q Consensus 448 ~a 449 (449) +. T Consensus 419 ~~ 420 (432) T protein:vir:97 419 AS 420 (432) T ss_pred CC Confidence 00 No 41 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=99.55 E-value=2.3e-14 Score=95.39 Aligned_cols=379 Identities=13% Similarity=0.041 Sum_probs=180.9 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) .+.|.+-. ........+........+ +... ....++.. -+.++.-+.++|+++|.++-+-.+ T Consensus 3 ~f~~~~~r--------~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~----~al~~~~v~~cv~~Ia~~iA~~p~ 64 (416) T protein:vir:81 3 IFYKNEKR--------DLQYNEDDLQMMVQTLPG-----FQGT-KLRQYKDI----EAIRHSDIFTAVMMIASDLARMPI 64 (416) T ss_pred cccccccc--------cccCCCcchhHHHHHhcc-----cccc-Cccccchh----hhhcchHHHHHHHHHHHhhccCce Confidence 22222100 000000000000000000 0000 01112211 122344456689999999999888 Q ss_pred EEecCCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEecccc Q lcl|Aclame:pro 81 EIIEGDDADDSEDETSWEKKSK-QVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGS 158 (449) Q Consensus 81 ~i~~~~~~~~~~~~~~~e~~~~-~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~ 158 (449) ++..+.+..... .+-..++ +=....-+..|.+.+.+. .++|-|++++.- ++.. .+..|.|+.... T Consensus 65 ~~~~~~~~~~~~---~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r-~~~G---------~~~~L~~i~~~~ 131 (416) T protein:vir:81 65 RVTVNGQINYSD---RIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITR-DKTG---------EPMNLTFRKTSE 131 (416) T ss_pred EEecCccccccc---hHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEE-CCCC---------cEEEEEEEcCce Confidence 876543221111 1111111 000001112333444443 467777776643 3221 133455554444 Q ss_pred CChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 159 LKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEKVEGGSGESF 235 (449) Q Consensus 159 i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~~~~~~~a~l~ 235 (449) +++. . ...|.+.+|... ....+....+.++++.||||...+ ..|.|.++.+.+.+.....+..... -+ T Consensus 132 v~v~---~----~~~g~~~~~~~~-~~~~~~~~~~~~~~~evihir~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~-~~ 202 (416) T protein:vir:81 132 IELK---S----DARGRLYYFHQR-IDSNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFLN-NF 202 (416) T ss_pred eEEE---E----CCCccEEEEEEE-ecCCCceeEEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHHHH-HH Confidence 4331 1 223555544432 222223334578999999986433 3588999988877655444433332 33 Q ss_pred HHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccC--ChHHHHH Q lcl|Aclame:pro 236 LKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVA--DPTATYN 308 (449) Q Consensus 236 ~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~ls--gl~d~~~ 308 (449) +++.... ..+++. +.. ..++..+++.+.+....++. ..++++.+.+|+.++.+.. .+-+... T Consensus 203 f~ng~~~~gil~~~---------~~~--~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~ 271 (416) T protein:vir:81 203 LRNGTHAGGILKMK---------GVL--DNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENK 271 (416) T ss_pred HhccCCCcEEEEeC---------CCC--CCHHHHHHHHHHHHHHhcCccccCceeecCCCceeEeccCCHHHHHHHHHHH Confidence 3332221 111111 111 12344444444443332221 2466667778999876643 3556667 Q ss_pred HHHHHHHhhhcCCceeeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC--CCceEEeCCCCCC Q lcl|Aclame:pro 309 VNLQTAAAGVDIPTRILIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV--AKKAVIWDDLNEQ 386 (449) Q Consensus 309 ~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~--~~~~~~f~pL~~~ 386 (449) ...+.||++.|||..+ +|...++.+ .+....+|. ..+.|+.+.+..-+-..+.+.- ..|.|.+..|... T Consensus 272 ~~~~~Ia~~fgVPp~~-lg~~~~~~~-~~~~~~~~~-------~~l~P~~~~ie~~ln~~l~~~~~~~~~~f~~~~l~~~ 342 (416) T protein:vir:81 272 SSTREIAGVFGIPLHK-FGIETANMS-ITDANLDYL-------STLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVV 342 (416) T ss_pred HHHHHHHHHhCCCHHH-cCCCCCCcc-HHHHHHHHH-------HHHHHHHHHHHHHHhhhccccccCceEEEechhhhcc Confidence 7888999999999865 575444332 233333332 2356766666654444443322 2467777788888 Q ss_pred CHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCC----------CCCCcchhhcccccCC Q lcl|Aclame:pro 387 TGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPL----------GEEDGDEEDKATDSAA 449 (449) Q Consensus 387 sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~----------~~~~~~ee~~~~~~~a 449 (449) |.++++ +++.+++++| ++|++|+|+..+++|..+... +-+..++.+.....+. T Consensus 343 D~~~~~-------~~~~~~~~~G---~~T~NE~R~~~gl~p~~~gd~~~~~~~~n~~~~~~~~~~~~~~~~~~ 405 (416) T protein:vir:81 343 DEKTQA-------EIDKINIDSG---KMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRAT 405 (416) T ss_pred CHHHHH-------HHHHHHHhCC---CcCHHHHHHHhCCCCCCCCCcceEeecccccccccccccCccccccc Confidence 888764 5566788888 999999999999988532211 1111111111111110 No 42 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=99.55 E-value=2.3e-14 Score=95.39 Aligned_cols=379 Identities=13% Similarity=0.041 Sum_probs=180.9 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) .+.|.+-. ........+........+ +... ....++.. -+.++.-+.++|+++|.++-+-.+ T Consensus 3 ~f~~~~~r--------~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~----~al~~~~v~~cv~~Ia~~iA~~p~ 64 (416) T protein:vir:45 3 IFYKNEKR--------DLQYNEDDLQMMVQTLPG-----FQGT-KLRQYKDI----EAIRHSDIFTAVMMIASDLARMPI 64 (416) T ss_pred cccccccc--------cccCCCcchhHHHHHhcc-----cccc-Cccccchh----hhhcchHHHHHHHHHHHhhccCce Confidence 22222100 000000000000000000 0000 01112211 122344456689999999999888 Q ss_pred EEecCCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEecccc Q lcl|Aclame:pro 81 EIIEGDDADDSEDETSWEKKSK-QVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGS 158 (449) Q Consensus 81 ~i~~~~~~~~~~~~~~~e~~~~-~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~ 158 (449) ++..+.+..... .+-..++ +=....-+..|.+.+.+. .++|-|++++.- ++.. .+..|.|+.... T Consensus 65 ~~~~~~~~~~~~---~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r-~~~G---------~~~~L~~i~~~~ 131 (416) T protein:vir:45 65 RVTVNGQINYSD---RIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITR-DKTG---------EPMNLTFRKTSE 131 (416) T ss_pred EEecCccccccc---hHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEE-CCCC---------cEEEEEEEcCce Confidence 876543221111 1111111 000001112333444443 467777776643 3221 133455554444 Q ss_pred CChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 159 LKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEKVEGGSGESF 235 (449) Q Consensus 159 i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~~~~~~~a~l~ 235 (449) +++. . ...|.+.+|... ....+....+.++++.||||...+ ..|.|.++.+.+.+.....+..... -+ T Consensus 132 v~v~---~----~~~g~~~~~~~~-~~~~~~~~~~~~~~~evihir~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~-~~ 202 (416) T protein:vir:45 132 IELK---S----DARGRLYYFHQR-IDSNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFLN-NF 202 (416) T ss_pred eEEE---E----CCCccEEEEEEE-ecCCCceeEEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHHHH-HH Confidence 4331 1 223555544432 222223334578999999986433 3588999988877655444433332 33 Q ss_pred HHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccC--ChHHHHH Q lcl|Aclame:pro 236 LKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVA--DPTATYN 308 (449) Q Consensus 236 ~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~ls--gl~d~~~ 308 (449) +++.... ..+++. +.. ..++..+++.+.+....++. ..++++.+.+|+.++.+.. .+-+... T Consensus 203 f~ng~~~~gil~~~---------~~~--~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~ 271 (416) T protein:vir:45 203 LRNGTHAGGILKMK---------GVL--DNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENK 271 (416) T ss_pred HhccCCCcEEEEeC---------CCC--CCHHHHHHHHHHHHHHhcCccccCceeecCCCceeEeccCCHHHHHHHHHHH Confidence 3332221 111111 111 12344444444443332221 2466667778999876643 3556667 Q ss_pred HHHHHHHhhhcCCceeeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC--CCceEEeCCCCCC Q lcl|Aclame:pro 309 VNLQTAAAGVDIPTRILIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV--AKKAVIWDDLNEQ 386 (449) Q Consensus 309 ~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~--~~~~~~f~pL~~~ 386 (449) ...+.||++.|||..+ +|...++.+ .+....+|. ..+.|+.+.+..-+-..+.+.- ..|.|.+..|... T Consensus 272 ~~~~~Ia~~fgVPp~~-lg~~~~~~~-~~~~~~~~~-------~~l~P~~~~ie~~ln~~l~~~~~~~~~~f~~~~l~~~ 342 (416) T protein:vir:45 272 SSTREIAGVFGIPLHK-FGIETANMS-ITDANLDYL-------STLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVV 342 (416) T ss_pred HHHHHHHHHhCCCHHH-cCCCCCCcc-HHHHHHHHH-------HHHHHHHHHHHHHHhhhccccccCceEEEechhhhcc Confidence 7888999999999865 575444332 233333332 2356766666654444443322 2467777788888 Q ss_pred CHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCC----------CCCCcchhhcccccCC Q lcl|Aclame:pro 387 TGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPL----------GEEDGDEEDKATDSAA 449 (449) Q Consensus 387 sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~----------~~~~~~ee~~~~~~~a 449 (449) |.++++ +++.+++++| ++|++|+|+..+++|..+... +-+..++.+.....+. T Consensus 343 D~~~~~-------~~~~~~~~~G---~~T~NE~R~~~gl~p~~~gd~~~~~~~~n~~~~~~~~~~~~~~~~~~ 405 (416) T protein:vir:45 343 DEKTQA-------EIDKINIDSG---KMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRAT 405 (416) T ss_pred CHHHHH-------HHHHHHHhCC---CcCHHHHHHHhCCCCCCCCCcceEeecccccccccccccCccccccc Confidence 888764 5566788888 999999999999988532211 1111111111111110 No 43 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=99.55 E-value=2.7e-14 Score=94.95 Aligned_cols=389 Identities=10% Similarity=0.056 Sum_probs=189.8 Q ss_pred CchhhHHHHHhhhHHHHHHH-HHHHHHH-HHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMAR-ARMGLMV-PTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~-~~~~~~~-~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) |++-++-+=+.......+.. ....++. .....+. .......+|... ..++.-+.++|++++++.-.- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~~g~~v~~~~----al~~~~V~~~v~~Ia~~iA~l 69 (454) T protein:vir:93 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAG-------AWQQGVKADPEA----VLSFHAVFACISLISQDIAKM 69 (454) T ss_pred CCCccccCcccccccccccchhhhhhhhhhhhhhcc-------hhhcCcccChHH----hhccHHHHHHHHHHHHhhccC Confidence 88877632222211101000 0001111 1101110 001112344432 224556788999999999988 Q ss_pred CcEEecCCChhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccEEEEEEecCCCcccccccccCceeeEEEec Q lcl|Aclame:pro 79 NPEIIEGDDADDSE--DETSWEKKSKQVFTNRLWRSFAEADRR-RLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSW 155 (449) Q Consensus 79 ~~~i~~~~~~~~~~--~~~~~e~~~~~l~~~~~~~~~~ea~~~-~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~ 155 (449) .+.+...+...... ....+...+.+=....-+..+.+.+.+ -.++|.|++++.-+ +.. .+..|.|+. T Consensus 70 p~~~~~~~~~g~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~-~~G---------~~~~L~~i~ 139 (454) T protein:vir:93 70 RLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRN-ARG---------QIKELRILD 139 (454) T ss_pred ceEEEEeccCCccchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEEC-CCC---------cEEEEEEEc Confidence 88876433221111 111111111110001111123333332 24677777776542 211 244455555 Q ss_pred cccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccC----CCCCcchhHHHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 156 AGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD----YSEDAIGFLEPAYNAFVSLEKVEGGS 231 (449) Q Consensus 156 ~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~----~~~~G~s~l~~~~~~l~~~~~~~~~~ 231 (449) ...+++... .| |. ..|++......+....+.+..+.||||.. ....|.|.++.+...+.....+... T Consensus 140 ~~~v~v~~~-~~------g~-~~y~~~~~~~~~~~~~~~~~~~eViH~k~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~- 210 (454) T protein:vir:93 140 WNRVEPLVA-DD------GE-VFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQEN- 210 (454) T ss_pred CcceEEEEc-CC------Cc-EEEEEEeccccccceeEEecCcceEEeccCCCCCCceeccHHHHHHHHHHHHHHHHHH- Confidence 544443211 11 32 34566543333334456788888998852 2346999998888876554444332 Q ss_pred HHHHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc---ceeecCCCceEEeecccCC--hHH Q lcl|Aclame:pro 232 GESFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND---VLMTTQGATVTPLVTSVAD--PTA 305 (449) Q Consensus 232 a~l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~ed~~~~~~~lsg--l~d 305 (449) ..-++++..+. ..+++ .+...++..+++.+.+....++.+ .+++..+-+|+.++.+... +-+ T Consensus 211 ~~~~f~ng~~p~gil~~------------~~~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le 278 (454) T protein:vir:93 211 STSFFRNGGRPSGVIEI------------PGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVE 278 (454) T ss_pred HHHHHhccCCccEEEec------------CCCCCHHHHHHHHHHHHHHhcccccCCceeccCCceEEEcccChhHHHHHH Confidence 33344443321 11111 122234455555555555444422 3555667789988876543 345 Q ss_pred HHHHHHHHHHhhhcCCceeeeccCccc-cccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-CCceEEeCC Q lcl|Aclame:pro 306 TYNVNLQTAAAGVDIPTRILIGNQQAE-RSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV-AKKAVIWDD 382 (449) Q Consensus 306 ~~~~~~~~iaaas~IP~t~L~Gqs~gg-~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~-~~~~~~f~p 382 (449) ......+.||.+.|||-.+| |...+. .++.+ -.+.||. ..+.|+.+.+..-+-..+.... ..+.|.+.. T Consensus 279 ~~~~~~~~Ia~~fgVPp~~l-g~~~~~t~sn~e~~~~~f~~-------~~l~P~~~~ie~~ln~~L~~~~~~~~~f~~~~ 350 (454) T protein:vir:93 279 QLKMTAEIVCSVFRVPAYKI-GVGQPPSSDNVEALEQQYYS-------QCLQTLIESIELLLDEALETGENESTEFDVTT 350 (454) T ss_pred HHHHHHHHHHHHhCCCHHHc-CCCCCCcchhHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcCCCCcEEEeechh Confidence 66677789999999998665 533322 22223 2344443 2456666666554444443221 235555667 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--CC--------C-----CCCCcchhhccccc Q lcl|Aclame:pro 383 LNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--EP--------L-----GEEDGDEEDKATDS 447 (449) Q Consensus 383 L~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~~--------~-----~~~~~~ee~~~~~~ 447 (449) |...|.++++ +++.+++++| ++|++|+|+..+++|... +. . .+...+....+.++ T Consensus 351 ll~~D~~~r~-------~~~~~~~~~G---~~T~NE~R~~~gl~pi~ggD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (454) T protein:vir:93 351 LLRMDSERRM-------KTLGDAVKNT---LLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKT 420 (454) T ss_pred hhccCHHHHH-------HHHHHHHhCC---CcCHHHHHHHhCCCCCCCCCeeeeccCccchHhhhccCcccCCCCCCccC Confidence 7777777654 4566778887 999999999999988532 10 0 00000000111111 Q ss_pred CC Q lcl|Aclame:pro 448 AA 449 (449) Q Consensus 448 ~a 449 (449) +. T Consensus 421 ~~ 422 (454) T protein:vir:93 421 AS 422 (454) T ss_pred CC Confidence 11 No 44 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=99.55 E-value=1.8e-13 Score=90.52 Aligned_cols=408 Identities=12% Similarity=0.088 Sum_probs=175.4 Q ss_pred CchhhHHHHHhhhH-------H--HHHHHHHHHHHHHHhhcCcccccchh---------ccCC---cccCCHHHH---HH Q lcl|Aclame:pro 1 MTDKLTLAVNHALN-------D--ARMARARMGLMVPTMGLDNKRHSAWC---------EYGF---PELVTYENL---YS 56 (449) Q Consensus 1 ~~~~~~~~v~~~~~-------~--~~~~~~~~~~~~~~~g~~t~r~~~~~---------~~~~---~~~~~~~~l---~~ 56 (449) .++||+.+-+.... . ..++-..........+++ +.++++. ..|| |...+++++ .. T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~ 81 (547) T protein:vir:63 3 LFESIRLAGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMN-NKEVAYSQPVIGSMSANPGFKTKPSIRNNQDLHGVLK 81 (547) T ss_pred hhhhhhhhcCCccccccccccccccchhhhhhhHHHHHHhhc-ccchhhhchhhheeecccccccCCccCChhHHHHHHH Confidence 33444432221000 0 000000000000011111 1111111 1122 123455554 44 Q ss_pred HHHcCchhHHHHhhhHHHHhcC-----------CcEEe--cCCChhhHHHH---HHHHHHHHHHHHH-----HHHHHHHH Q lcl|Aclame:pro 57 LYRRGGIAHGAVEKLVGKCWQT-----------NPEII--EGDDADDSEDE---TSWEKKSKQVFTN-----RLWRSFAE 115 (449) Q Consensus 57 ~Y~~~~l~r~iVd~pa~d~~r~-----------~~~i~--~~~~~~~~~~~---~~~e~~~~~l~~~-----~~~~~~~e 115 (449) .|..++++++||++.++...+- ++++. ..+.....+.. ..++.-+++.... .-+..|.+ T Consensus 82 ~~~~npiv~~~I~~~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s~~~f~~ 161 (547) T protein:vir:63 82 KFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFVK 161 (547) T ss_pred HhhcCHHHHHHHHHHHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccchHHHHHH Confidence 7999999999999999876531 12221 11111111111 1222222221110 01223334 Q ss_pred HHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccCCce-eEEeeecccCCCccce Q lcl|Aclame:pro 116 ADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPK-LWKYTERLPNGSSRRV 193 (449) Q Consensus 116 a~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~-~y~i~~~~~~~~~~~~ 193 (449) .+... .++|.+++.+.- +... .+..|.++....+.+.. ++..-....+. +|++. ...... T Consensus 162 ~lv~d~ll~Gn~~~~i~r-d~~G---------~~~~L~~l~p~~V~~~~---~~~g~~~~~~~~y~~~~-----~~~~~~ 223 (547) T protein:vir:63 162 KIVRDTYMYDQVNFEKVF-NRNQ---------SMVRFVAKDPTTIFFAT---TADGKIPDNGNRFVQVI-----DQKIVA 223 (547) T ss_pred HHHHHHHhhCCEEEEEEE-CCCC---------cEEEEEEecCceeEEEE---CCccccccCceEEEEEc-----CCcEEE Confidence 43333 456666655543 2211 13334444443333221 11100001112 22221 122245 Q ss_pred EEccceeeeccCCC-------CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh-hhhhhhhhHHHHHhhhccChH Q lcl|Aclame:pro 194 DIHPDRVFILGDYS-------EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLN-VNFEKEIDFTNLASLYGVSID 265 (449) Q Consensus 194 ~IH~SRli~~~~~~-------~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~-~~~~~~~~~~~l~~~~~~~~~ 265 (449) .++++-||||..++ ..|.|.++.+...+.....+... ...++++....-. +.+.. .....+ T Consensus 224 ~~~~~eiih~r~n~~~~~~~~~~G~Spi~~~~~~i~~~~~a~~~-~~~~f~Ng~~p~giL~~~~----------~~~ls~ 292 (547) T protein:vir:63 224 TFNAREMAFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEAF-NDRFFSHGGTTRGILQIKA----------AQQQSQ 292 (547) T ss_pred EeccccEEEecccCCCCcccccccccHHHHHHHHHHHHHHHHHH-HHHHHHcCCCcceEEEecC----------CCCCCH Confidence 67888899986432 34899999888877655544333 2333444322100 11000 011234 Q ss_pred HHHHHHHHHHHHHhccc---cce-ee-cCCCceEEeecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCccccccchh Q lcl|Aclame:pro 266 ELQDKFNEVAGEINRGN---DVL-MT-TQGATVTPLVTSVAD--PTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED 338 (449) Q Consensus 266 ~~~~~~~~~~~~~~~~~---~~~-l~-~~~ed~~~~~~~lsg--l~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD 338 (449) +..+++.+.+....+|. +.+ ++ ..+-+|+.++.+... +-+......+.||.+.+||-..|--...+...+.+. T Consensus 293 e~~~~lk~~~~~~~~G~~nagk~~vl~~~g~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~ 372 (547) T protein:vir:63 293 HALEIFKREWKNSLSGINGSWQIPVVSAEDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKG 372 (547) T ss_pred HHHHHHHHHHHHHhcCcccccccccccCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccccccccccc Confidence 45555555554443332 222 33 233477777655433 445566688899999999986653222211111110 Q ss_pred HHHHHHHHHHH----HHhhhHHHHHHHHHHHHHhcCC-CCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccc Q lcl|Aclame:pro 339 QKYFNARCQSR----RVDLSFEIEDFCDKLIELKIID-AVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPA 413 (449) Q Consensus 339 ~~nyyd~I~~~----Qe~~~~p~~~~l~~l~~~~~~~-~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~ 413 (449) ....|..++.. -+..+.|+++.+...+-..+.. ....+.|+|..+...++.+++++ ..++.+| . T Consensus 373 ~s~t~sn~e~~~~~~~~~tL~P~~~~ie~~ln~~L~~~~~~~~~~~f~~~~~~~~~~~~~~--------~~~~~~g---~ 441 (547) T protein:vir:63 373 GSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEFGDKYTFQFVGGDIKSELESVKI--------LAEKAKV---A 441 (547) T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEeeccccccHHHHHHH--------HHHHhCC---C Confidence 00011111111 1234667776666554444332 22468999998888887766542 2344556 7 Q ss_pred cCHHHHHHHhcCCCCCC---CCCC-------------CCCcchhhccccc-----CC Q lcl|Aclame:pro 414 FSREEIRTAAGYDNDDE---EPLG-------------EEDGDEEDKATDS-----AA 449 (449) Q Consensus 414 ~~~~e~r~~~~~~~~~~---~~~~-------------~~~~~ee~~~~~~-----~a 449 (449) +|++|+|+..+++|..+ .... ...+++.+++... .+ T Consensus 442 lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (547) T protein:vir:63 442 MTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTG 498 (547) T ss_pred cCHHHHHHHhCCCCCCCCCceeecccccccccccccccCCccccchhhccccccccC Confidence 89999999999977321 1100 0000000000000 00 No 45 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=99.55 E-value=1.5e-14 Score=96.36 Aligned_cols=385 Identities=13% Similarity=0.132 Sum_probs=186.8 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcC-cccccchhccCC-----cccCCHHHHHHHHHcCchhHHHHhhhHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLD-NKRHSAWCEYGF-----PELVTYENLYSLYRRGGIAHGAVEKLVGK 74 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~-t~r~~~~~~~~~-----~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d 74 (449) |.+-=.|..=...+... .+..-+....+.. +..+-....++. ...++.+ .+.++..+.++|++++++ T Consensus 1 ~~~~~~mg~f~r~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~----~al~~~~V~~~i~~Ia~~ 73 (432) T protein:vir:81 1 MPDEKKLGLFGQLKAMF---VPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNAD----AIMRLDAVAACVKLVSQA 73 (432) T ss_pred CCchhhcchhhhhhhhc---ccccccccccccccccCccchhhhcccccccCcccchH----hhhccHHHHHHHHHHHHh Confidence 33322222221111000 0000000000000 000001111111 1223332 355678899999999999 Q ss_pred HhcCCcEEecCCChhhHH-HHHHHHHHHH-H---HH-HHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCce Q lcl|Aclame:pro 75 CWQTNPEIIEGDDADDSE-DETSWEKKSK-Q---VF-TNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGL 148 (449) Q Consensus 75 ~~r~~~~i~~~~~~~~~~-~~~~~e~~~~-~---l~-~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l 148 (449) .-+-.+.+....+....+ ....+...++ + .- ...+|+.+... -.|+|-|++++.-.+|+ + T Consensus 74 ia~lp~~~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~---lll~Gnayv~i~~~~g~-----------~ 139 (432) T protein:vir:81 74 IAAMPLTMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTR---LLLDGTAYVRKVVTDGR-----------I 139 (432) T ss_pred hhhCceeeEEecCCcceecccchHHHHHHhcccccCCHHHHHHHHHHH---HhhcCCeEEEEEecCCc-----------E Confidence 998888764322211111 1111111111 0 00 01233333322 24577777665443332 2 Q ss_pred eeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHH Q lcl|Aclame:pro 149 QKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLE 225 (449) Q Consensus 149 ~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~ 225 (449) ..|.|+....+++. .|+ .|. ..|.+... .+..+.++++.|+||...+ ..|.|.++.+.+.|.... T Consensus 140 ~~L~~l~~~~v~v~---~~~----~g~-~~y~~~~~----~g~~~~~~~~~iih~r~~~~dg~~G~spi~~~~~~i~~~~ 207 (432) T protein:vir:81 140 ESLQYLANDRLTIT---TDP----KGN-TAYRYRRT----DGQMIDIPKQQIWKIMGYSLDGENGLSAIRYGAQIFGTAI 207 (432) T ss_pred EEEEEEcCCceEEE---ECC----CCc-EEEEEEec----CceEEEEccccEEEecCCCCCCcccccHHHHHHHHHHHHH Confidence 23444444433332 121 233 34555422 2345788999999986543 458899988887765544 Q ss_pred HHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeecccCC--h Q lcl|Aclame:pro 226 KVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSVAD--P 303 (449) Q Consensus 226 ~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~lsg--l 303 (449) .+....+ -++++....- .+....+...++..+++.+.+....+.-..+++..+.+|+.++.+... + T Consensus 208 ~~~~~~~-~~f~ng~~~~-----------gil~~~~~l~~e~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~ 275 (432) T protein:vir:81 208 AAEAQAA-RAFRNGQLQS-----------VYYQIDRFLTDDQYDSFAKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQL 275 (432) T ss_pred HHHHHHH-HHHhcCCCcc-----------eEEecCCCCCHHHHHHHHHHHhhhhcCCCceecCCCceEEEccCCHHHHHH Confidence 4433322 2334322211 111111222345555555544433333345666777899998877553 4 Q ss_pred HHHHHHHHHHHHhhhcCCceeeeccCcccccc----ch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC--CC- Q lcl|Aclame:pro 304 TATYNVNLQTAAAGVDIPTRILIGNQQAERSS----TE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV--AK- 375 (449) Q Consensus 304 ~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s----~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~--~~- 375 (449) -+......++||.+.+||-.+| |...++..+ .| -.+.||.. .+.|+.+.++.-+-..+..+. .. T Consensus 276 le~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~~~~sn~eq~~~~f~~~-------tl~P~~~~ie~~l~~kLl~~~~~~~~ 347 (432) T protein:vir:81 276 LQSRQYSVESICRFFGVPPSMI-GHSSAGTTSWGSGIESQQLGFLTM-------TLSPWLRRIEQSIALNLLSPAERRRY 347 (432) T ss_pred HHHHHHHHHHHHHHhCCCHHHc-CCcCCccccccchHHHHHHHHHHH-------HHHHHHHHHHHHHHhhccCccccCce Confidence 5677788899999999998665 644333222 22 24456543 456666666554444444322 23 Q ss_pred -ceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC-----------CCC-------- Q lcl|Aclame:pro 376 -KAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP-----------LGE-------- 435 (449) Q Consensus 376 -~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~-----------~~~-------- 435 (449) +.|.+..|...|.+++ ++++.+++++| ++|++|+|+..+++|.++.. .+. T Consensus 348 ~~~fd~~~llr~d~~~r-------~~~~~~~~~~G---~~t~NE~R~~~glpp~~g~~~~~~~~~~~~pl~~~~~~~~~~ 417 (432) T protein:vir:81 348 FADFDTSALLRADSAAR-------SSYYSQLVNNG---LMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDSIGLQASPE 417 (432) T ss_pred EEEeechhhhccCHHHH-------HHHHHHHHhCC---CCCHHHHHHHhCCCCCCCCcceEeecCcccchhhhccCCCCC Confidence 4555568888887775 45566778887 99999999999998864210 000 Q ss_pred --CCcchhhcccccC Q lcl|Aclame:pro 436 --EDGDEEDKATDSA 448 (449) Q Consensus 436 --~~~~ee~~~~~~~ 448 (449) ...+.++.+..+. T Consensus 418 ~~~~~~n~~~~~~~~ 432 (432) T protein:vir:81 418 PASGLGNQQQDKVSK 432 (432) T ss_pred CCCCCCCcccccccC Confidence 0000001111111 No 46 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=99.55 E-value=6.8e-14 Score=92.78 Aligned_cols=382 Identities=12% Similarity=0.074 Sum_probs=186.7 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCc--ccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFP--ELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~--~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) |+ .=. ++.-.++....+.+...+..+.....+..+... ..++ ...|.+++.+.++|++.|+++-.- T Consensus 1 m~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----~~~a~~~~~v~~~i~~ia~~iA~l 68 (412) T protein:vir:26 1 MN------VIA--KENIVTRIKKKLIDNWIDQSTSKLYDFSPWKNRSFWGVI----NNTLETNETIFSAITKLSNSMASL 68 (412) T ss_pred Cc------cch--hhhhhhhhhhhHhhhhhcccccccccccccCCccccccc----hhhhhccHHHHHHHHHHHHhHhhC Confidence 22 110 011112333333333222222211111111000 1122 234567788899999999999988 Q ss_pred CcEEecCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccc Q lcl|Aclame:pro 79 NPEIIEGDDADDSEDETSWEKKSKQVF-TNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAG 157 (449) Q Consensus 79 ~~~i~~~~~~~~~~~~~~~e~~~~~l~-~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~ 157 (449) .+.+....+..+......+..+=+..- ...+|+.+. ..-.++|-|++++.- +... .+..|.++... T Consensus 69 p~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~---~~lll~Gnay~~i~r-~~~G---------~~~~L~~l~~~ 135 (412) T protein:vir:26 69 PLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIE---TIRNEKGNAYVLIER-DIYH---------QPSKLFLLNPD 135 (412) T ss_pred ceeEeeccccccchHHHHHHhhcccCCCHHHHHHHHH---HHHhhcCceEEEEEE-CCCC---------cEEEEEEEcCc Confidence 888765443332221111111101110 012333322 223567777776643 2211 23445565554 Q ss_pred cCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 158 SLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGE 233 (449) Q Consensus 158 ~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~ 233 (449) .+++... . -+.+.+|.+... .+..+.+.++-|+||... ...|.|.++.+...+.....+... T Consensus 136 ~v~v~~~-~------~~~~~~y~~~~~----~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~a~~~~--- 201 (412) T protein:vir:26 136 VVEMLIE-N------QSRELYYSIHAA----TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTF--- 201 (412) T ss_pred eeEEEEe-C------CCcEEEEEEEcC----CceEEEEccccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHH--- Confidence 4443211 1 134566777522 234567899999999643 345888887766544322221111 Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc-ceeecCCCceEEeecccC--ChHHHHHHH Q lcl|Aclame:pro 234 SFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND-VLMTTQGATVTPLVTSVA--DPTATYNVN 310 (449) Q Consensus 234 l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ed~~~~~~~ls--gl~d~~~~~ 310 (449) .+.+....- .-+....+...++..+++.+.+....++.+ .+++..+.+|+.++.+.. .+-+..... T Consensus 202 -~~~~~~~~~----------~~i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~ 270 (412) T protein:vir:26 202 -NLTEMQKPD----------SFMLKYGSNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLT 270 (412) T ss_pred -HHHhcCCCC----------ceEEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHH Confidence 011100000 001111122334444555544443333333 445566778998876643 445555667 Q ss_pred HHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC---CCC--ceEEeCCCC Q lcl|Aclame:pro 311 LQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA---VAK--KAVIWDDLN 384 (449) Q Consensus 311 ~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~---~~~--~~~~f~pL~ 384 (449) .++||.+.+||-.+|-+...+..++.+ -.+.||.. .+.|+.+.|..-+-..+... ..+ |.|.+.+|. T Consensus 271 ~~~Ia~afgVPp~~lg~~~~~~~sn~e~~~~~f~~~-------~l~P~~~~ie~~ln~kLl~~~~~~~~~~~~fd~~~l~ 343 (412) T protein:vir:26 271 RERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQH-------TLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYL 343 (412) T ss_pred HHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCCcccccCcceEEeechhhh Confidence 889999999998877654444444444 34566665 35676666655444443322 223 455566888 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--C--------CCCCCCc-chhhcccccCC Q lcl|Aclame:pro 385 EQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--E--------PLGEEDG-DEEDKATDSAA 449 (449) Q Consensus 385 ~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~--------~~~~~~~-~ee~~~~~~~a 449 (449) ..|.++++ +++.+++++| ++|++|+|+..+++|... . +.+...+ ..-.+..|.-+ T Consensus 344 ~~d~~~~~-------~~~~~~~~~G---~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~gG~~n~ 409 (412) T protein:vir:26 344 RADSATQA-------EVYFKAVRSG---YYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNV 409 (412) T ss_pred ccCHHHHH-------HHHHHHHhCC---CcCHHHHHHHhCCCCCCCcCeeeecccccccccchhhcccccCCCCCc Confidence 88877765 4556777777 999999999999988532 1 1110000 00000011111 No 47 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=99.55 E-value=1.3e-13 Score=91.28 Aligned_cols=395 Identities=12% Similarity=0.085 Sum_probs=176.1 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCC---cccCCHHHHH---HHHHcCchhHHHHhhhHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGF---PELVTYENLY---SLYRRGGIAHGAVEKLVGK 74 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~---~~~~~~~~l~---~~Y~~~~l~r~iVd~pa~d 74 (449) |.+.|+.|.+.-. -+++....|. ....-|| +...++.++. ..|..|+++++||++.++. T Consensus 39 ~~~~~~k~~~~~~---------~a~~~~~~~~------~~~~~~~~~r~~~~~~~~l~~~~~~~~~npiv~~~I~~ia~~ 103 (551) T protein:vir:80 39 EQEQISKAMNNKE---------VAYSQPVIGS------MSANPGFKTKPSIRNNQDLHGVLKKFGGNIILNAIINTRSNQ 103 (551) T ss_pred cHHHHHHhhccCc---------ceeecccccc------eecCcccccCccccChhHHHHHHHHhhcCHHHHHHHHHHHHH Confidence 3333332222100 0011111110 0001111 1233554444 4688999999999999998 Q ss_pred Hhc-----------CCcEEecCC--ChhhHHHHHH---HHHHHHHHHHH-----HHHHHHHHHHHh-ccccccEEEEEEe Q lcl|Aclame:pro 75 CWQ-----------TNPEIIEGD--DADDSEDETS---WEKKSKQVFTN-----RLWRSFAEADRR-RLVGRYAGILLHI 132 (449) Q Consensus 75 ~~r-----------~~~~i~~~~--~~~~~~~~~~---~e~~~~~l~~~-----~~~~~~~ea~~~-~rl~Gga~i~i~i 132 (449) .-+ -++.|.-.+ .....+.... ++.-+++.... .-+..|.+.+.. -.++|.+++.+.- T Consensus 104 IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p~~~s~~~f~~~lv~dlll~Gnay~~i~r 183 (551) T protein:vir:80 104 VSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKVF 183 (551) T ss_pred HhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHhcCCEEEEEEE Confidence 654 123332111 1111111111 22212211100 011223333332 2467777666554 Q ss_pred cCCCcccccccccCceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC----- Q lcl|Aclame:pro 133 RDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS----- 207 (449) Q Consensus 133 ~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~----- 207 (449) + ... .+..|.++....+.+.. ++..-..-.+..|... ..+.....+.++.||||..++ T Consensus 184 d-~~G---------~~~~L~~l~p~~V~v~~---~~~g~~~~~~~~y~~~----~~g~~~~~~~~~eiiH~~~n~~~~~~ 246 (551) T protein:vir:80 184 N-RNQ---------SMVRFVAKDPTTIFFAT---TADGKIPDNGNRFVQV----IDQKIVATFNAREMAFAVRNPRSDIY 246 (551) T ss_pred C-CCC---------cEEEEEEeCCceeEEEE---CCccccccCceEEEEE----eCCcEEEEEcccceEEecccCCCCcc Confidence 2 211 13344444444443321 1111000112222221 112224567888899986432 Q ss_pred --CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh-hhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc-- Q lcl|Aclame:pro 208 --EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLN-VNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN-- 282 (449) Q Consensus 208 --~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 282 (449) ..|.|.++.+.+.|.....+... ...++++..+.-. +.+.. .....++..+++.+.+....+|. T Consensus 247 ~~~~G~spi~~a~~~i~~~~a~~~~-~~~~f~Ng~~p~giL~~~~----------~~~lt~e~~~~lk~~~~~~~~G~~n 315 (551) T protein:vir:80 247 ATGYGYPELEIALKQFIAHENTEAF-NDRFFSHGGTTRGILQIKA----------AQQQSQHALEIFKREWKNSLSGING 315 (551) T ss_pred cccccccHHHHHHHHHHHHHHHHHH-HHHHHHcCCCcceEEEEcC----------CCCCCHHHHHHHHHHHHHHhcCccc Confidence 34999999988877655544333 2334444322110 11100 01123445555555554443332 Q ss_pred -cc-eeec-CCCceEEeecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccc--chh--HHHHHHHHHHHHHhh Q lcl|Aclame:pro 283 -DV-LMTT-QGATVTPLVTSVAD--PTATYNVNLQTAAAGVDIPTRILIGNQQAERSS--TED--QKYFNARCQSRRVDL 353 (449) Q Consensus 283 -~~-~l~~-~~ed~~~~~~~lsg--l~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s--~eD--~~nyyd~I~~~Qe~~ 353 (449) +. .++. .+-+|+.++.+... +-+......+.||.+.+||-..|--...+...+ ++. ..|+-......-+.. T Consensus 316 ag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~~Ia~aFgVPp~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~t 395 (551) T protein:vir:80 316 SWQIPVVSAEDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKG 395 (551) T ss_pred cCccccccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhcCCHHHcCcccccccccccccccchhhHHHHHHHHHHHH Confidence 22 2333 33467777655443 456667788899999999976553222221111 111 122222222222345 Q ss_pred hHHHHHHHHHHHHHhcCC-CCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC-- Q lcl|Aclame:pro 354 SFEIEDFCDKLIELKIID-AVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE-- 430 (449) Q Consensus 354 ~~p~~~~l~~l~~~~~~~-~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~-- 430 (449) +.|++..+...+-..+.. ....+.|+|..+...+.++++++. .++.+| ++|++|+|+..+++|..+ T Consensus 396 L~P~~~~ie~~ln~~L~~~~~~~~~f~f~~~~~~~~~~~~~~~--------~~~~~g---~lT~NE~R~~~gl~P~~egG 464 (551) T protein:vir:80 396 LQPLLGFIEDFINKHIVAEFGDKYTFQFVGGDIKSELESVKIL--------AEKAKV---AMTVNEVRKELNLPGDVIGG 464 (551) T ss_pred HHHHHHHHHHHHHhhhccccCCceEEEeeccChhhHHHHHHHH--------HHHhcC---CcCHHHHHHHhCCCCCCCCC Confidence 677777666555444332 224688999988777766655422 233455 789999999999987321 Q ss_pred -CCC-----C--------CCCcchhhccc-----ccCC Q lcl|Aclame:pro 431 -EPL-----G--------EEDGDEEDKAT-----DSAA 449 (449) Q Consensus 431 -~~~-----~--------~~~~~ee~~~~-----~~~a 449 (449) ... . ...+.+.+++. +..+ T Consensus 465 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (551) T protein:vir:80 465 DIPLNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTG 502 (551) T ss_pred ceeecccccccccccccccCcchhhhhhccccccCcCC Confidence 110 0 00000000000 0000 No 48 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=99.55 E-value=2.3e-14 Score=95.33 Aligned_cols=360 Identities=9% Similarity=0.003 Sum_probs=176.5 Q ss_pred HHHHHHHhh--cCcc-cccchhccCC----cccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHH Q lcl|Aclame:pro 23 MGLMVPTMG--LDNK-RHSAWCEYGF----PELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDET 95 (449) Q Consensus 23 ~~~~~~~~g--~~t~-r~~~~~~~~~----~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~ 95 (449) |+|+..... ..+. .+..|..+.. ...++.+ .+.+++.+.++|++.|.++-.-.+++.. .. T Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~al~~~~V~~~v~~ia~~ia~~p~~~~~---~~------ 67 (397) T protein:vir:38 1 MPLLKLNKSHSQGFSLNDPDWVNFLTGGEAQKYVSAD----TALKNSDIFSLIMQLSGDLAMVRYTSES---DR------ 67 (397) T ss_pred CcchhhhhcccCcccCCchhhhhhhcCCcCCceechH----HhhccHHHHHHHHHHHHHHhhCcccccc---cH------ Confidence 333321100 0000 1111211110 1223433 2345788999999999998776654311 10 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccC Q lcl|Aclame:pro 96 SWEKKSKQVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYG 174 (449) Q Consensus 96 ~~e~~~~~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg 174 (449) +.....+=....-+..|...+.+. .++|-|++++.- ++.. .+..|.++....+++.. + ..| T Consensus 68 -~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r-~~~g---------~~~~l~~l~~~~v~i~~---~----~~~ 129 (397) T protein:vir:38 68 -SQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHK-NTNG---------VDLSWEYLRPSQVQPML---L----QDG 129 (397) T ss_pred -HHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEE-CCCC---------cEEEEEEEcCceeEEEE---c----CCC Confidence 111111000011122233333333 456777666644 3221 13344454444433221 1 113 Q ss_pred CceeEEeeecccCCCccceEEccceeeeccCCC----CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhh-hhhhhhhh Q lcl|Aclame:pro 175 QPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS----EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAAR-QLNVNFEK 249 (449) Q Consensus 175 ~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~----~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~-~l~~~~~~ 249 (449) ....|++..... ..+..+.+.++.||||.... ..|.|.++.+...+.....+...... ++++... ...++. T Consensus 130 ~~~~y~~~~~~~-~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~-~f~ng~~~~~il~~-- 205 (397) T protein:vir:38 130 SGLIYNINFDEP-AIGYMENVPAADVIHIRLLSKNGGKTGISPLSALINEQQIKDASNELTLK-ALKQSVTASAVLTI-- 205 (397) T ss_pred ceEEEEEEeccc-cccceeEecCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHH-HHhccCCccEEEEe-- Confidence 445666653221 22334678999999986432 45899999988877654444333332 2333211 111111 Q ss_pred hhhHHHHHhhhccChHHHHHHHHHHHHHHhcc---ccceeecCCCceEEeecccC--ChHHHHHHHHHHHHhhhcCCcee Q lcl|Aclame:pro 250 EIDFTNLASLYGVSIDELQDKFNEVAGEINRG---NDVLMTTQGATVTPLVTSVA--DPTATYNVNLQTAAAGVDIPTRI 324 (449) Q Consensus 250 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~ed~~~~~~~ls--gl~d~~~~~~~~iaaas~IP~t~ 324 (449) .+....+..+++.........+ -..+++..+-+|+.++.+.. .+-+......++||++.|||..+ T Consensus 206 ----------~~~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~ 275 (397) T protein:vir:38 206 ----------QKGGLLDAETRIARSKEISKQIHNSDGPVVIDALEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSY 275 (397) T ss_pred ----------CCCCCHHHHHHHHHHHHHHhcccccCCceecCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHH Confidence 1122233334443333333222 22456667788998887644 45577788999999999999888 Q ss_pred eeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 325 LIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQT 404 (449) Q Consensus 325 L~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~ 404 (449) |-|...+ .++.+..+.||. ..+.|+.+.+..-+-..+.. ++.+.+.-+...+.++ +++++++ T Consensus 276 lg~~~~~-~~~~e~~~~~~~-------~~l~P~~~~ie~~ln~~l~~---~~~~~~~~~~~~d~~~-------~~~~~~~ 337 (397) T protein:vir:38 276 LNGQGDQ-QSSITQISGQYA-------KSLNRYVQAIVGELNDKLHA---NISANIRFAIDAMGDQ-------YASTISS 337 (397) T ss_pred hCCCCCc-ccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhccC---hhcccccccccCCHHH-------HHHHHHH Confidence 7654332 233345556662 24567666665544444332 2223333355555444 4566777 Q ss_pred HHHcCCccccCHHHHHHHhcCCCCCCCCCC-------------------CCCcchhhcccccC Q lcl|Aclame:pro 405 MLGSGDNPAFSREEIRTAAGYDNDDEEPLG-------------------EEDGDEEDKATDSA 448 (449) Q Consensus 405 ~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~-------------------~~~~~ee~~~~~~~ 448 (449) +++.| ++|++|+|+..+++|....++. +...++.+...|+. T Consensus 338 ~~~~G---~~t~nE~R~~lg~~p~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~~~~~ 397 (397) T protein:vir:38 338 SVKGG---TIAGNQARFILQNSGYLAKDLPDPEKEPQQAIQLIQQEGGENDGNNSDERGSDPE 397 (397) T ss_pred HHhCC---CcCHHHHHHHhCCCCCCCCccccccccccccccccccccCCCCCCCCCCCCCCCC Confidence 88888 8999999999988764221110 00000111111111 No 49 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=99.54 E-value=1.8e-13 Score=90.47 Aligned_cols=400 Identities=12% Similarity=0.043 Sum_probs=186.7 Q ss_pred Cchh--hHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhc- Q lcl|Aclame:pro 1 MTDK--LTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQ- 77 (449) Q Consensus 1 ~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r- 77 (449) |..+ +.-+++..+.+.. ....++++...|.++. +. +...-+...+...|..+.+.++||++.++.+.+ T Consensus 41 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~l~~~~~~~iv~~~i~~~~~~V~~~ 111 (574) T protein:vir:80 41 PYSMESIEKGMNGKTTAYM--QPIIGEMSVNPGYKTK-PS------IRNSQDLHKTLKKFGNNIILNAIINTRSNQVSMY 111 (574) T ss_pred CCCHHHHHHhHhhhccccc--chhhhhccccccccCc-Cc------cCCcccHHHHHHhhccChhHHHHHHHHHHHHHHH Confidence 5544 4444443321111 1111222222222221 11 111223355667888999999999998877653 Q ss_pred ----------CCcEEecCCC--hhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhc-cccccEEEEEEecCC Q lcl|Aclame:pro 78 ----------TNPEIIEGDD--ADDSEDETSWEKKSKQVFTN---------RLWRSFAEADRRR-LVGRYAGILLHIRDE 135 (449) Q Consensus 78 ----------~~~~i~~~~~--~~~~~~~~~~e~~~~~l~~~---------~~~~~~~ea~~~~-rl~Gga~i~i~i~d~ 135 (449) -+++|...+. ......... ...+.+|... .-+..|.+.+.+. -++|.+++.+.- +. T Consensus 112 ~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~-~~~l~~ll~~~~~~~nP~~~s~~ef~~~lv~~lll~Gnayi~i~r-~~ 189 (574) T protein:vir:80 112 CKPARNSETGVGYEIRLKDIEAEPTSHDIAN-IKRIESFLENTAQFRDPNRDNFTTFCKKLVRATYMYDQVNFEKVF-DK 189 (574) T ss_pred HHHHHhhhccCceEEEEeccCCCccchhhhh-hhHHHHHHhccCCCCCCccccHHHHHHHHHHHHHhcCCeEEEEEE-CC Confidence 2344432211 111111111 1112222210 0111233333333 457777766554 22 Q ss_pred CcccccccccCceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC-------CC Q lcl|Aclame:pro 136 KDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY-------SE 208 (449) Q Consensus 136 ~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~-------~~ 208 (449) .. .+..|.|+....+.+..- .+... ..+.+.+|++.. ......+.++.||||... .. T Consensus 190 ~G---------~~~~L~pl~p~~V~v~~d-~~~~~-~~~~~~y~~~~~-----g~~~~~~~~~eiih~~~~~~~~~~~~~ 253 (574) T protein:vir:80 190 DG---------NFIKFDTVDPTTIFLATN-GEGKL-IKNGERFVQVID-----NRIVAKFNERELAFAVRNPRADIEVGQ 253 (574) T ss_pred CC---------cEEEEEEEcCceeEEEEc-Ccccc-ccCceEEEEEeC-----CceEEEEccccEEEEeccCCCCccccc Confidence 11 234455555444443211 11100 112244565531 222456788888887532 23 Q ss_pred CcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhh-hhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc---cc Q lcl|Aclame:pro 209 DAIGFLEPAYNAFVSLEKVEGGSGESFLKNAAR-QLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN---DV 284 (449) Q Consensus 209 ~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~-~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 284 (449) .|.|.++.+...+.....+....+. ++++... ...+.+.. .....++..+++.+.+....++. +. T Consensus 254 ~G~spi~~a~~~i~~~~~a~~~~~~-~f~ng~~p~gil~~~~----------~~~ls~e~~~~lk~~~~~~~~G~~n~g~ 322 (574) T protein:vir:80 254 YGYPELEIALKQFIAHENTEVFNDR-FFSHGGTTRGILHVKT----------GQQQSQQALDIFRREWRSSLAGINGSWQ 322 (574) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH-HHhccCCCceEEEeCC----------CCCCCHHHHHHHHHHHHHHhcccccccc Confidence 4899999988877665555444333 3333221 11111100 01123455555655554433332 22 Q ss_pred --eeecCCCceEEeecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh----HHHHHHHHHHHHHhhhHH Q lcl|Aclame:pro 285 --LMTTQGATVTPLVTSVA--DPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED----QKYFNARCQSRRVDLSFE 356 (449) Q Consensus 285 --~l~~~~ed~~~~~~~ls--gl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD----~~nyyd~I~~~Qe~~~~p 356 (449) ++.+.+-+|+.++.+.. .+-+......+.||.+.+||-.+|=-.+.+...+++. ..|.-..-....+..+.| T Consensus 323 ~~vl~~~G~~~~~l~~s~~D~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P 402 (574) T protein:vir:80 323 IPVVSAEDVKFVNMTPSANDMQFEKWLNYLINVISALYGIDPAEINFPNNGGATGSKGGSLNEGNSKEKMQASQNKGLQP 402 (574) T ss_pred ceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccccccccccccchhHHHHHHHHHHHHHHH Confidence 33345567888776554 3456677788999999999975553333343333321 122222222333445678 Q ss_pred HHHHHHHHHHHhcCC-CCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--CCC Q lcl|Aclame:pro 357 IEDFCDKLIELKIID-AVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--EPL 433 (449) Q Consensus 357 ~~~~l~~l~~~~~~~-~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~~~ 433 (449) +++.+...+-..+.. ....+.|+|+...-.+..+++.+ ..++.+| ++|++|+|+..+++|... ... T Consensus 403 ~~~~ie~~ln~~Ll~~~~~~~~~~f~~~d~~~~~~~~~~--------~~~~~~G---~lT~NE~R~~lgl~Pi~gGD~~~ 471 (574) T protein:vir:80 403 LLRFIEDTVNTYIVAEFGEKYQFQFRGGDLSAQLDKLKI--------IEQEGKV---FRTVNEIRHDKGLEPIKGGDVIL 471 (574) T ss_pred HHHHHHHHHHhhhhhhcCCceEEEecccchhhHHHHHHH--------HHHHhCC---ccCHHHHHHHhCCCCCCCCCEee Confidence 777777655444332 22457888886654443333321 2356666 999999999999988632 100 Q ss_pred --------CCCCc-----------------------chhhcccccCC Q lcl|Aclame:pro 434 --------GEEDG-----------------------DEEDKATDSAA 449 (449) Q Consensus 434 --------~~~~~-----------------------~ee~~~~~~~a 449 (449) +.... ++.....+++. T Consensus 472 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 518 (574) T protein:vir:80 472 NGVHIQAIGQALQEEQLEYQRSQDRLNRLLELSGGDVEQPEPEEPKD 518 (574) T ss_pred eccceeecccccccccCCccchhccccccccccCCCCCCCCCCCCCC Confidence 00000 00000000000 No 50 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=99.53 E-value=7.7e-14 Score=92.48 Aligned_cols=371 Identities=14% Similarity=0.146 Sum_probs=184.1 Q ss_pred HHHHHHHhhcCcc-----cccchhccCC-c---ccCC--HHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhH Q lcl|Aclame:pro 23 MGLMVPTMGLDNK-----RHSAWCEYGF-P---ELVT--YENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDS 91 (449) Q Consensus 23 ~~~~~~~~g~~t~-----r~~~~~~~~~-~---~~~~--~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~ 91 (449) +-+.++- -.-+. ++.....|++ + ..++ ....-..|..++.+.++|++.+++.-.-.+.+......... T Consensus 1 ~~~~~~~-~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~V~acV~~IA~~iA~lpl~l~~~~~~~~~ 79 (518) T protein:vir:10 1 MLLANGQ-TLSAPAMAELSPQMQDSYYYAPAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGDTET 79 (518) T ss_pred CcccCce-eecCchhhhhhhhhhcccccccccceecccccchhhHHHhhhHHHHHHHHHHHHhhccCceEEEEEcCCCce Confidence 1111110 00000 0111111111 1 1111 11222357788899999999999998777776433222111 Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhh Q lcl|Aclame:pro 92 EDETSWEKKSKQVFT--------NRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAE 163 (449) Q Consensus 92 ~~~~~~e~~~~~l~~--------~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~ 163 (449) +.. ...+..|.. ..+|+.+... -.++|-|++++.- ++.. .+..|.++....+++.. T Consensus 80 ~~~---~~~~~~Ll~~PN~~~t~~~F~~~lv~~---lll~Gnay~~i~r-~~~G---------~~~~L~~l~p~~v~v~~ 143 (518) T protein:vir:10 80 EES---DTGYAKLLADPCEYLDPFAFWEWVAST---LDIYGETYLAIQK-NKSG---------TPEKLMPMHPSRVAIKR 143 (518) T ss_pred ecc---chHHHHHHcCCCCCCCHHHHHHHHHHH---HhhcCCeEEEEEE-CCCC---------cEEEEEEECCCceEEEE Confidence 111 111122222 1233333322 2467877777654 2211 13445555544444322 Q ss_pred hhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC----CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 164 WDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS----EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNA 239 (449) Q Consensus 164 ~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~----~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~ 239 (449) . . .+-+..|.+.... +.....+.+..+.||||.... ..|.|.++.+.+.+.....+....+ .++++. T Consensus 144 ~-~------~~~~~~y~~~~~~-~~~~~~~~~~~~eViHir~~s~dg~~~G~spi~~a~~~i~~~~a~~~~~~-~~f~ng 214 (518) T protein:vir:10 144 N-S------RTGRYEYYFQAGA-GVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATA-AMWKNA 214 (518) T ss_pred c-C------CCCEEEEEEEecC-CccceEEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHH-HHHhcC Confidence 1 1 1122345554221 112233567788899986532 3588999888887765555443333 333443 Q ss_pred hhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccCC--hHHHHHHHHH Q lcl|Aclame:pro 240 ARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVAD--PTATYNVNLQ 312 (449) Q Consensus 240 ~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~lsg--l~d~~~~~~~ 312 (449) ... ..+++ .+...++..+++.+.+....++. ..+++..+.+|+.++.+... +-+......+ T Consensus 215 ~~p~gil~~------------~~~ls~e~~~~~k~~~~~~~~G~~nag~v~vL~~G~~~~~l~~s~~D~q~le~r~~~~~ 282 (518) T protein:vir:10 215 GRPNLVLRH------------EKRLSEAAQQRLREQFDRAHSGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNRE 282 (518) T ss_pred CCccEEEec------------CCCCCHHHHHHHHHHHHHHhcCccccCcceEcCCCceEEEccCChhHHHHHHHHHHHHH Confidence 221 11111 12223445555655555444332 24666677889988876543 4555667789 Q ss_pred HHHhhhcCCceeeeccCc-cccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC---CCCceEEeCCCCCCC Q lcl|Aclame:pro 313 TAAAGVDIPTRILIGNQQ-AERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA---VAKKAVIWDDLNEQT 387 (449) Q Consensus 313 ~iaaas~IP~t~L~Gqs~-gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~---~~~~~~~f~pL~~~s 387 (449) .||.+.+||-.+| |... +..++.+ -..+||.. .+.|++..+..-+-..+... ...+.|....|...| T Consensus 283 eIa~afgVPp~~l-g~~~~~t~sn~eq~~~~f~~~-------tL~P~l~~ie~~ln~~L~~~~~~~~~~~fd~~~llr~D 354 (518) T protein:vir:10 283 EVCGVYDIAPPIV-HILDRATFSNISAQMRAFYRD-------TMAIPIARIQSAMDKYVGQYWVRKNRMKFDIDDVIQPD 354 (518) T ss_pred HHHHHhCCCHHHh-ccCCCCCchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcccccCCceEEEechhhhccC Confidence 9999999998666 6433 3233333 34556543 35566665554443333321 223455556888888 Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCCC-----------------CCcchhhcccccCC Q lcl|Aclame:pro 388 GTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGE-----------------EDGDEEDKATDSAA 449 (449) Q Consensus 388 ekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~~-----------------~~~~ee~~~~~~~a 449 (449) .+++ ++++.+++++| ++|++|+|+..+++|.+++..+. ..+++-....++++ T Consensus 355 ~~~r-------~~~~~~~~~~G---~lT~NE~R~~~Gl~pie~~~gD~~~~~~n~~pl~~~~~~~~~g~~~~~~~~~~~ 423 (518) T protein:vir:10 355 WEAK-------SESTQKMVNSG---VATPNEGREIMGLPRSDDPKADELYANSALQPLGATPDGAVEGEEAPAPKRPAS 423 (518) T ss_pred HHHH-------HHHHHHHHhCC---CcCHHHHHHHhCCCCCCCCCCCeeeecccceecccccccccCCCCCCCCCCCCc Confidence 7765 55667778887 99999999999998864221110 00000000001111 No 51 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=99.52 E-value=3e-14 Score=94.70 Aligned_cols=369 Identities=11% Similarity=0.040 Sum_probs=173.1 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) |++++...-+... .+..........+... ......+. ..++ .++.++++|+++|+++-+-.+ T Consensus 3 ~f~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~---~~~~-~~~~v~~~i~~ia~~ia~~~~ 64 (406) T protein:vir:95 3 LFDRWRRTKRKSK-----IRADTGYVGLFMSGED---------VSFLVPGY---VRLS-DNPEVRMAVHKIADLISSMTI 64 (406) T ss_pred chhhhcccccccc-----ccccchhhhhhccCcc---------cCccccCH---HHHh-hcHHHHHHHHHHHHhhccCce Confidence 4444431111000 0000000000000000 00112222 2333 578889999999999999998 Q ss_pred EEecCCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc-cccccEEEEEEe-cCCCcccccccccCceeeEEEeccc Q lcl|Aclame:pro 81 EIIEGDDADDSEDETSWEKKSK-QVFTNRLWRSFAEADRRR-LVGRYAGILLHI-RDEKDWNLPATKGRGLQKVSVSWAG 157 (449) Q Consensus 81 ~i~~~~~~~~~~~~~~~e~~~~-~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i-~d~~~~~~Pl~~~~~l~~i~v~~~~ 157 (449) .+....+.........+...+. +=....-+..+.+.+.+. .|+|.|.+++.+ .++.. .+..+.|+... T Consensus 65 ~~~~~~~~~~~~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g---------~~~~l~~i~~~ 135 (406) T protein:vir:95 65 YLMQNTEDGDIRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADG---------LIDELVPLTPS 135 (406) T ss_pred EEEEecCCcceeecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCC---------cEEEEEEEcCc Confidence 8753332211111111111111 000001122233333333 456655544433 22221 12334444433 Q ss_pred cCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeecc--CC---CCCcchhHHHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 158 SLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILG--DY---SEDAIGFLEPAYNAFVSLEKVEGGSG 232 (449) Q Consensus 158 ~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~--~~---~~~G~s~l~~~~~~l~~~~~~~~~~a 232 (449) .+++. .+.. .|.+.. .+..+.++.||||. .. ...|.|.++.+...+.....+..... T Consensus 136 ~v~~~---~~~~--------~~~~~~-------~~~~~~~~evih~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~ 197 (406) T protein:vir:95 136 KVNFL---DTPD--------GYQVLY-------GGQTFNYDEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQATATKK 197 (406) T ss_pred eeEEE---EcCC--------eEEEEe-------ccEEEchhHEEEeeccCCCCCCccccCHHHHHHHHHHHHHHHHHHHH Confidence 33321 1111 133321 13467788888885 22 34599999998887766665544444 Q ss_pred HHHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcc----ccceee-cCCCceEEee-cc--cCCh Q lcl|Aclame:pro 233 ESFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRG----NDVLMT-TQGATVTPLV-TS--VADP 303 (449) Q Consensus 233 ~l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~-~~~ed~~~~~-~~--lsgl 303 (449) ..+ ++.... ..+++ .+...++..+++.+.+....++ -..+++ ..+++++++. .+ -+.+ T Consensus 198 ~~~-~ng~~~~~il~~------------~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~v~~~~~~~~~~~~~~~~~d~q~ 264 (406) T protein:vir:95 198 SFM-SGKYMPSLIVKV------------DAATAELSSEEGRNAVFKKYLQATEAGQPWIIPAELLEVEQVKPLSLKDIAI 264 (406) T ss_pred HHH-hccCCcceEEEe------------CCCCCHHHHHHHHHHHHHHhccccccCCceeecCCCccccccccCChhHHHH Confidence 333 322111 11111 1122233333343333222222 112333 3445665432 23 3455 Q ss_pred HHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC-CceEEeC Q lcl|Aclame:pro 304 TATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVA-KKAVIWD 381 (449) Q Consensus 304 ~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~-~~~~~f~ 381 (449) .+......+.||.+.|||..+| |... .++ ...+||. ..+.|+.+.+..-+-..+....+ .+.|.+. T Consensus 265 ~e~~~~~~~~Ia~~fgVp~~~l-g~~~----~~~~~~~~~~~-------~~l~P~~~~ie~~l~~~l~~~~~~~~~fd~~ 332 (406) T protein:vir:95 265 NEAVELDKRTVAGMFGVPAFLL-GIGE----FNRDEYNNFIN-------STILPIAKGIEQELTRKLLISPDLYFKFNPR 332 (406) T ss_pred HHHHHHHHHHHHHHhCCCHHHc-CCCC----chHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCCCCcEEEeech Confidence 6777888999999999998666 4321 123 3455554 34778888877655555443322 3566777 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCC----------CCCCCCcchhhcccccCC Q lcl|Aclame:pro 382 DLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEE----------PLGEEDGDEEDKATDSAA 449 (449) Q Consensus 382 pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~----------~~~~~~~~ee~~~~~~~a 449 (449) .|...|.++++ +.+.+++++| ++|++|+|+..+++|...- +++........+..+... T Consensus 333 ~l~~~d~~~~~-------~~~~~l~~~G---~~t~NE~R~~~gl~p~~~gd~~~~~~n~~~~~~~~~~~~~k~g~~~~ 400 (406) T protein:vir:95 333 SLYAYDLKELA-------EVGSNMYVRG---IMEGNEVRDWLGLSPKEGLSELVILENYIPLDKIGDQSKLKGGDNSG 400 (406) T ss_pred hhhcCCHHHHH-------HHHHHHHhCC---CcCHHHHHHHhCCCCCCCcceeeeccCccchhhcccccccCCCCCCC Confidence 88777777654 5566778887 8999999999999875321 000000000001111111 No 52 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=99.52 E-value=6.2e-14 Score=93.01 Aligned_cols=371 Identities=12% Similarity=0.081 Sum_probs=191.7 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccc-----hhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSA-----WCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKC 75 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~-----~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~ 75 (449) |.++|+..-... .......... +........++.+ .+.++..+.++|++++++. T Consensus 16 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~al~~~~v~~cv~~Ia~~i 74 (424) T protein:vir:18 16 WWARLQSWFVGG-----------------RLVTPNQGSQTGPVSAHGHLGDSSINDE----RILQISTVWRCVSLISTLT 74 (424) T ss_pred hHHHHHhhhccc-----------------ccccccccccccccccccccccccccHH----HhhccHHHHHHHHHHHHhh Confidence 333333211100 0000000000 0011111234432 3456777899999999999 Q ss_pred hcCCcEEecCCChhhHHH---HHHHHHHHH-HHH----HHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCc Q lcl|Aclame:pro 76 WQTNPEIIEGDDADDSED---ETSWEKKSK-QVF----TNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRG 147 (449) Q Consensus 76 ~r~~~~i~~~~~~~~~~~---~~~~e~~~~-~l~----~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~ 147 (449) -.-.+++...++...... ...+...++ +=. ...+|+.+... -.++|-|++++.- +... . T Consensus 75 A~lp~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~---lll~Gnay~~i~r-~~~G---------~ 141 (424) T protein:vir:18 75 ACLPLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQ---LCFYGNAYALVDR-NSAG---------D 141 (424) T ss_pred ccCceEEEEeecCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHH---HhhcCCeEEEEEE-CCCC---------c Confidence 888888754333221111 111112121 000 01233333322 2457878777643 2111 1 Q ss_pred eeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC---CCCcchhHHHHHHHHHHH Q lcl|Aclame:pro 148 LQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY---SEDAIGFLEPAYNAFVSL 224 (449) Q Consensus 148 l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~---~~~G~s~l~~~~~~l~~~ 224 (449) +..|.|+....+++.. + +.+..|++.. .+..+.+.++.||||.+. ...|.|.++.+.+.+... T Consensus 142 ~~~L~pl~~~~V~v~~-~--------~~~~~y~~~~-----~g~~~~~~~~eIih~r~~~~dg~~G~spi~~~~~~i~~~ 207 (424) T protein:vir:18 142 VISLLPLQSANMDVKL-V--------GKKVVYRYQR-----DSEYADFSQKEIFHLKGFGFTGLVGLSPIAFACKSAGVA 207 (424) T ss_pred EEEEEEecCcceEEEE-c--------CCeEEEEEEe-----CCeEEEeccccEEEecCcCCCCcccccHHHHHHHHHHHH Confidence 3445555555444311 1 2234566642 233567889999998643 245899999888877554 Q ss_pred HHHhhHHHHHHHHHHhhhhh-hhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc---ceeecCCCceEEeeccc Q lcl|Aclame:pro 225 EKVEGGSGESFLKNAARQLN-VNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND---VLMTTQGATVTPLVTSV 300 (449) Q Consensus 225 ~~~~~~~a~l~~~~~~~~l~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~ed~~~~~~~l 300 (449) ..+....+ -++++..+.-. +++ .+ +...++..+++.+.+....++.+ .+++..+-+|+.++.+. T Consensus 208 ~a~~~~~~-~~f~ng~~p~gil~~---------~~--~~l~~e~~~~~~~~~~~~~~g~nag~~~vl~~g~~~~~l~~~~ 275 (424) T protein:vir:18 208 VAMEDQQR-DFFANGAKSPQILST---------GE--KVLTEQQRSQVEENFKEIAGGPVKKRLWILEAGFSTSAIGVTP 275 (424) T ss_pred HHHHHHHH-HHHHccCCcceEEEe---------CC--cCCCHHHHHHHHHHHHHHhCCcccCCceeccCCceEEecCCCh Confidence 44433333 33444322211 111 00 11234555555555555444432 45666677898887764 Q ss_pred C--ChHHHHHHHHHHHHhhhcCCceeeeccCccccc---cch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC- Q lcl|Aclame:pro 301 A--DPTATYNVNLQTAAAGVDIPTRILIGNQQAERS---STE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV- 373 (449) Q Consensus 301 s--gl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~---s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~- 373 (449) . .+-+......+.||.+.|||-.+| |...++.. ..| -...||.. .+.|+.+.++.-+-..+.... T Consensus 276 ~d~q~le~~~~~~~~Ia~~fgVPp~~l-g~~~~~t~~~sn~eq~~~~f~~~-------tl~P~~~~ie~~l~~~L~~~~~ 347 (424) T protein:vir:18 276 QDAEMMASRKFQVSELARFFGVPPHLV-GDVEKSTSWGSGIEQQNLGFLQY-------TLQPYISRWENSIQRWLIPAKD 347 (424) T ss_pred hHHHHHHHHHHHHHHHHHHhCCCHHHh-CCCCCcccccccHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCCccc Confidence 4 345666778899999999997665 64443322 223 34556533 456777666654544443222 Q ss_pred -CC--ceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--CC------CCCCCcchhh Q lcl|Aclame:pro 374 -AK--KAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--EP------LGEEDGDEED 442 (449) Q Consensus 374 -~~--~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~~------~~~~~~~ee~ 442 (449) .. +.|.+..|...|.++|++ ++.+++++| ++|++|+|+..+++|... .. .+.....+.. T Consensus 348 ~~~~~~~fd~~~llr~d~~~r~~-------~~~~~~~~G---~~T~NE~R~~~gl~pi~gGD~~~~~~n~~~l~~~~~~~ 417 (424) T protein:vir:18 348 VGRIHAEHNLDGLLRGDSASRAA-------FMKAMGEAG---LRTINEMRRTDNLPPLPGGDVAMRQSQYVPITDLGTNK 417 (424) T ss_pred cCCeEEEEechhhhccCHHHHHH-------HHHHHHhCC---CcCHHHHHHHhCCCCCCCcCeeeeccCccchHhhhccC Confidence 23 556667888888887754 555677887 999999999999998632 10 0111112233 Q ss_pred cccccCC Q lcl|Aclame:pro 443 KATDSAA 449 (449) Q Consensus 443 ~~~~~~a 449 (449) .-.++.| T Consensus 418 ~p~~~ga 424 (424) T protein:vir:18 418 EPRNNGA 424 (424) T ss_pred CCccCCC Confidence 4444555 No 53 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=99.52 E-value=1.4e-13 Score=91.06 Aligned_cols=377 Identities=12% Similarity=0.088 Sum_probs=184.4 Q ss_pred Cch-hhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcc---cccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHh Q lcl|Aclame:pro 1 MTD-KLTLAVNHALNDARMARARMGLMVPTMGLDNK---RHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCW 76 (449) Q Consensus 1 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~---r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~ 76 (449) |.- ++...+.. .+.+...+..+. ...-|....+ .-++. ..|.++..+.++|+.+|.++- T Consensus 1 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~----~~~~~~~~V~~ci~~Ia~~ia 63 (409) T protein:vir:93 1 MAKENIVTRIKK------------KLIDNWIDQSTSKLYDFSPWKNRSF-WGVIN----NTLETNETIFSAITKLSNSMA 63 (409) T ss_pred CCccchhhhhhh------------hhhhhhhccccccccccccccCccc-cccch----hhhhccHHHHHHHHHHHHhhh Confidence 432 22211111 111111111111 0111111000 01222 235677888999999999999 Q ss_pred cCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccEEEEEEecCCCcccccccccCceeeEEEec Q lcl|Aclame:pro 77 QTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRR-RLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSW 155 (449) Q Consensus 77 r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~-~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~ 155 (449) +-.+.+....+..+......+..+=+.. .-+..+.+.+.+ -.++|-|++++.- ++.. .+..|.++. T Consensus 64 ~lp~~~~~~~~~~~~~~~~lL~~~PN~~---~t~~~f~~~~~~~lll~Gnay~~i~r-~~~G---------~~~~L~~l~ 130 (409) T protein:vir:93 64 SLPLKMYEDYKVVNTEVSDLLTVSPNNS---LSSFDFINQIETIRNEKGNAYVLIER-DIYH---------QPSKLFLLN 130 (409) T ss_pred hCceeEeeccccccchHHHHHhhhcccC---CCHHHHHHHHHHHHhhcCceEEEEEE-CCCC---------cEEEEEEEc Confidence 8888876544333322111111111111 111222223332 2567777777654 2211 134455555 Q ss_pred cccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 156 AGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGS 231 (449) Q Consensus 156 ~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~ 231 (449) ...+++... . -+.+.+|.+... .+..+.++++.|+||... ...|.|.++.+-..+.....+... T Consensus 131 ~~~v~~~~~-~------~~~~~~y~~~~~----~g~~~~~~~~eVih~r~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~- 198 (409) T protein:vir:93 131 PDVVEMLIE-N------QSRELYYSIHAA----TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTF- 198 (409) T ss_pred CceeEEEEe-C------CCcEEEEEEEcC----CceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHH- Confidence 444433211 1 134566777532 334567899999999653 235888887766544332222111 Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc-cceeecCCCceEEeecccC--ChHHHHH Q lcl|Aclame:pro 232 GESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN-DVLMTTQGATVTPLVTSVA--DPTATYN 308 (449) Q Consensus 232 a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ed~~~~~~~ls--gl~d~~~ 308 (449) .+..+. .. ...+........++..+++.+.+....++. +.+++..+.+|+.++.+.. .+-+... T Consensus 199 --~~~~~~-~~----------~~~i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~r~ 265 (409) T protein:vir:93 199 --NLTEMQ-KP----------DSFMLKYGSNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASEN 265 (409) T ss_pred --HHHhcC-CC----------CceEEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHHH Confidence 011100 00 001111122233444555555544332333 3455666778998876643 4555666 Q ss_pred HHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC---CCCceEE--eCC Q lcl|Aclame:pro 309 VNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA---VAKKAVI--WDD 382 (449) Q Consensus 309 ~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~---~~~~~~~--f~p 382 (449) ...+.||.+.+||-.+|-+...+..++.| -.+.||.. .+.|+.+.+..-+-..+... ..+..|+ +.. T Consensus 266 ~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~~f~~~-------~l~P~~~~ie~~l~~~Ll~~~~~~~~~~~~fd~~~ 338 (409) T protein:vir:93 266 LTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQH-------TLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKS 338 (409) T ss_pred HHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCCcccccCcceEEeechh Confidence 77889999999998877654444444444 34567665 36777766665444443322 2244445 457 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--C--------CCCCCCc-chhhcccccCC Q lcl|Aclame:pro 383 LNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--E--------PLGEEDG-DEEDKATDSAA 449 (449) Q Consensus 383 L~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~--------~~~~~~~-~ee~~~~~~~a 449 (449) |...|.++++ +++.+++++| ++|++|+|+..+++|... . +.+.... ....+..|.-+ T Consensus 339 ll~~d~~~~~-------~~~~~~~~~G---~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~~gG~~n~ 406 (409) T protein:vir:93 339 YLRADSATQA-------EVYFKAVRSG---YYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNV 406 (409) T ss_pred hhccCHHHHH-------HHHHHHHhCC---CcCHHHHHHHhCCCCCCCcCeeeecccccccccchhhcccccCCCCCc Confidence 7777766654 5667778887 999999999999988632 1 1110000 00001111111 No 54 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=99.51 E-value=4.4e-14 Score=93.80 Aligned_cols=396 Identities=12% Similarity=0.023 Sum_probs=175.8 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) |++++-.........+.... +..... +.. ..+..+ +...+++..|.++|..|+..+.||+..+++..+-++ T Consensus 1 ~~~~~~~i~s~~~~~~i~~~---~~~s~~--~~~---~~~~~~-~~pp~~~~~la~l~~~n~~v~scI~~ia~~IA~l~~ 71 (542) T protein:vir:41 1 MFNYHLSIRSLEKYKAIKRE---EVESQA--LGE---TRFEEY-VEPKVNPLVLLSLLQVNPYHASACSIKANDIIRTGY 71 (542) T ss_pred Cccccccccccccchhhhhc---cccccc--ccc---ccCCcc-ccCCCCHHHHHHHHhhcHHHHHHHHHHHHHHhhCce Confidence 99877644443332221111 100000 111 111111 234578899999999999999999999999999999 Q ss_pred EEecCCChhhHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccCceeeEEEeccc Q lcl|Aclame:pro 81 EIIEGDDADDSEDETSWEKKS-KQ-VFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGRGLQKVSVSWAG 157 (449) Q Consensus 81 ~i~~~~~~~~~~~~~~~e~~~-~~-l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~~l~~i~v~~~~ 157 (449) .+....... ....+ +. .-...+++.+. ..-.++|-|++.+.-+. |+ +..|.++... T Consensus 72 ~~~~~~~~~-------l~~~lpN~~~s~~~f~~~~v---~~lll~Gnayi~i~rd~~G~-----------~~~L~~l~~~ 130 (542) T protein:vir:41 72 ILEGDDEGV-------VDEFIRACKPSFEYVLLRAL---EDLQVFNYCTLEVVRDDRGD-----------PIRFEYIPSH 130 (542) T ss_pred eeecccchh-------hhhhcCCCCCCHHHHHHHHH---HHHhhcCCeEEEEEEcCCCc-----------EEEEEEEcCc Confidence 874322110 10100 00 00012333332 23367888888765532 22 2223333322 Q ss_pred cCChhhhhccc-cccccCCceeEEeeeccc-----CCCccceEEccceeeeccC----CCCCcchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 158 SLKVAEWDTGI-NSKTYGQPKLWKYTERLP-----NGSSRRVDIHPDRVFILGD----YSEDAIGFLEPAYNAFVSLEKV 227 (449) Q Consensus 158 ~i~~~~~~~Dp-~s~~yg~P~~y~i~~~~~-----~~~~~~~~IH~SRli~~~~----~~~~G~s~l~~~~~~l~~~~~~ 227 (449) .+++.. +.+- ..-..+....|.+..... ..+..+..+.++-||||.. ....|.|.+..+...+.....+ T Consensus 131 ~v~v~~-d~~~~~~~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~eIiHir~~~~~~~~~Glspi~~~~~~i~~~~~~ 209 (542) T protein:vir:41 131 TIRVHK-DGSRYRQTWDGVNITHFKDYRYEGEINPETGEDQDSVGANELVFIHIPSPVCSYYGVPRYVSAAPAILAMQKI 209 (542) T ss_pred ceEEEE-cCCeeEeeecCCcceeEEeecccccccccccccccccCcccEEEecCCCCCCCcccccHHHHHHHHHHHHHHH Confidence 222210 0000 000011112221111000 0011123455566777653 3357999888888766443332 Q ss_pred hhHHHHHHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHh----ccccce-eec------CCCceEE Q lcl|Aclame:pro 228 EGGSGESFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEIN----RGNDVL-MTT------QGATVTP 295 (449) Q Consensus 228 ~~~~a~l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-l~~------~~ed~~~ 295 (449) . ....-++++.... ..+++... +.+-.........+..+++.+.+.... .+-+.. ++. ++-+|+. T Consensus 210 ~-~~~~~~f~Ng~~p~gIL~~~~~--l~de~~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~p 286 (542) T protein:vir:41 210 D-EYNYAFFDNYTIPSYVITVTGE--FEDELEEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTP 286 (542) T ss_pred H-HHHHHHHhccCCccEEEEeCCc--cccccccccccCHHHHHHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEE Confidence 2 2223334443221 11111100 000000111222344444444333221 122223 332 1224555 Q ss_pred eecccC--ChHHHHHHHHHHHHhhhcCCceeeeccC-cccccc--ch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc Q lcl|Aclame:pro 296 LVTSVA--DPTATYNVNLQTAAAGVDIPTRILIGNQ-QAERSS--TE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKI 369 (449) Q Consensus 296 ~~~~ls--gl~d~~~~~~~~iaaas~IP~t~L~Gqs-~gg~~s--~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~ 369 (449) ++.+.. .+-+......++||++.+||..+| |-. .+.+++ .| -.++||.. .+.|+++.+...+-..+ T Consensus 287 l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~l-G~~~~~t~n~sn~Eq~~~~f~~~-------tL~P~~~~ie~~ln~~L 358 (542) T protein:vir:41 287 LNTSQKELSFREYAAEKKYDIAAAHMIDPYRL-GIADTGPLGGNFAEVTRRTYYES-------VVRPQQNIISSILTDFF 358 (542) T ss_pred cCCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-CcCCCcccccccHHHHHHHHHHH-------HHHHHHHHHHHHHHhhc Confidence 544322 344555667889999999998765 644 343432 23 34555443 34566666655444333 Q ss_pred CCC-CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHH-hcCCCCCCCCCCC----------C- Q lcl|Aclame:pro 370 IDA-VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTA-AGYDNDDEEPLGE----------E- 436 (449) Q Consensus 370 ~~~-~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~-~~~~~~~~~~~~~----------~- 436 (449) ... ..++.|+|+..-.+... ++..+.+++++| ++|++|+|+. .+++|.++..+.. . T Consensus 359 ~~~~~~~~~~~f~~~~ll~~d--------~~~~~~~~v~~G---ilT~NE~Re~L~g~~pgdd~~l~p~~~~~~~~~~~~ 427 (542) T protein:vir:41 359 QVKFNPKTRFKFNDETLLESD--------SVRNCALLVQSG---VLTPAEARERLFGLDGGPDIFMVPSKGAAKSVKRQE 427 (542) T ss_pred ccccCCceEEEecchhhcchH--------HHHHHHHHHhCC---CCCHHHHHHhhCCCCCCCccccccccccccccccCC Confidence 321 12567777654333221 122345678887 9999999985 4777654431100 0 Q ss_pred ---CcchhhcccccCC Q lcl|Aclame:pro 437 ---DGDEEDKATDSAA 449 (449) Q Consensus 437 ---~~~ee~~~~~~~a 449 (449) +.++........| T Consensus 428 ~n~~~~~~~~~~k~~~ 443 (542) T protein:vir:41 428 RNYEKNQIREIRKIYA 443 (542) T ss_pred cCCCCCchhhhhhccc Confidence 0000000000001 No 55 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=99.51 E-value=2.4e-13 Score=89.75 Aligned_cols=379 Identities=11% Similarity=0.092 Sum_probs=185.0 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCc--ccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFP--ELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~--~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) |.-. ...++-...+.+...+....+-..+..+.-+ ..++.+ .|.++..+.++|++.|.++-+- T Consensus 1 ~~~~-----------~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~a~~~~~V~~ci~~ia~~ia~l 65 (409) T protein:vir:96 1 MAKE-----------NIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINN----TLETNETIFSAITKLSNSMASL 65 (409) T ss_pred Cccc-----------cchhhhhhHHhhhhhccccccccccccccCccccccchh----hHhhhHHHHHHHHHHHHhhhhC Confidence 3211 0111112222222222211111011110000 112222 3566778899999999999988 Q ss_pred CcEEecCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccc Q lcl|Aclame:pro 79 NPEIIEGDDADDSEDETSWEKKSKQVF-TNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAG 157 (449) Q Consensus 79 ~~~i~~~~~~~~~~~~~~~e~~~~~l~-~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~ 157 (449) .+.+....+..+......+..+=+..- ...+++.+.. .-.++|-|++++.- +... .+..|.|+... T Consensus 66 p~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~---~lll~Gnay~~i~r-~~~G---------~~~~L~~l~~~ 132 (409) T protein:vir:96 66 PLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIET---IRNEKGNAYVLIER-DIYH---------QPSKLFLLNPD 132 (409) T ss_pred ceEEeecccccchhHHHHHhhhcccCCCHHHHHHHHHH---HHhhcCceEEEEEE-CCCC---------cEEEEEEEcCc Confidence 888765444332221111111101000 0123333322 22467777776643 2211 13345555544 Q ss_pred cCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 158 SLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGE 233 (449) Q Consensus 158 ~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~ 233 (449) .+++.. | +.+.+.+|.+.. ..+..+.+.++.|+||... ...|.|.+..+.+.+.....+... T Consensus 133 ~v~v~~---~----~~~~~~~y~~~~----~~g~~~~~~~~evih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~--- 198 (409) T protein:vir:96 133 VVEMLI---E----NQSRELYYSIHA----ATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTF--- 198 (409) T ss_pred eeEEEE---e----CCCcEEEEEEEc----CCceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHH--- Confidence 443321 1 113455677652 2234567888889998643 345888888776554322221111 Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc-cceeecCCCceEEeecccC--ChHHHHHHH Q lcl|Aclame:pro 234 SFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN-DVLMTTQGATVTPLVTSVA--DPTATYNVN 310 (449) Q Consensus 234 l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ed~~~~~~~ls--gl~d~~~~~ 310 (449) .+.+..+.-. -+....+...++..+++.+.+....++. ..+++..+-+|+.++.+.. .+-+..... T Consensus 199 -~~~~~~~~~~----------~i~~~~~~l~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~ 267 (409) T protein:vir:96 199 -NLTEMQKPDS----------FMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLT 267 (409) T ss_pred -HHHhcCCCce----------eEEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHH Confidence 1111111000 0111122233444555554444333333 3455566778999887654 445666677 Q ss_pred HHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC---CCCceEEe--CCCC Q lcl|Aclame:pro 311 LQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA---VAKKAVIW--DDLN 384 (449) Q Consensus 311 ~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~---~~~~~~~f--~pL~ 384 (449) .++||.+.+||-.+|-+...+..++.| -.+.||... +.|+.+.+..-+-..+..+ ..+..|+| .+|. T Consensus 268 ~~~Ia~~fgVPp~~lg~~~~~~~s~~e~~~~~f~~~~-------l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~ll 340 (409) T protein:vir:96 268 RERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHT-------LLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYL 340 (409) T ss_pred HHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHH-------HHHHHHHHHHHHHhhcCCcccccCcceEEeechhhh Confidence 889999999998777544444444444 455676653 6777766665554444332 22455555 5777 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--C--------CCCCC-CcchhhcccccCC Q lcl|Aclame:pro 385 EQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--E--------PLGEE-DGDEEDKATDSAA 449 (449) Q Consensus 385 ~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~--------~~~~~-~~~ee~~~~~~~a 449 (449) ..|.+++ ++++.+++++| ++|++|+|+..+++|... . +.+.. +.....+..|..+ T Consensus 341 ~~d~~~~-------~e~~~~~~~~G---~~T~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~~~~gG~~n~ 406 (409) T protein:vir:96 341 RADSATQ-------AEVYFKAVRSG---YYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNV 406 (409) T ss_pred ccCHHHH-------HHHHHHHHhCC---CCCHHHHHHHhCCCCCCCcceeeecccccccccchhhcccccCCCCCc Confidence 7777665 45667778887 999999999999987632 1 11100 0000111111111 No 56 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=99.50 E-value=1.8e-13 Score=90.43 Aligned_cols=378 Identities=11% Similarity=0.076 Sum_probs=185.9 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCc--ccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFP--ELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~--~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) |.-+.. .++-+..+.....+....+-..+..+... ..++.+ .|.++..+.++|+..|.++-+- T Consensus 1 ~~~~~~-----------~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~a~~~~~v~~~i~~Ia~~ia~l 65 (409) T protein:vir:94 1 MAKENI-----------VTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINN----TLETNETIFSAITKLSNSMASL 65 (409) T ss_pred Cccccc-----------chhhhhHHhhhhhcCCcccccccccccCccccccchh----hhhccHHHHHHHHHHHHhhhhC Confidence 432111 11112222222212111111111110000 112222 3667888899999999999999 Q ss_pred CcEEecCCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-ccccccEEEEEEecCCCcccccccccCceeeEEEecc Q lcl|Aclame:pro 79 NPEIIEGDDADDSEDETSWEKKSK-QVFTNRLWRSFAEADRR-RLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWA 156 (449) Q Consensus 79 ~~~i~~~~~~~~~~~~~~~e~~~~-~l~~~~~~~~~~ea~~~-~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~ 156 (449) .+++....+..+.... ..++ +=....-+..+.+.+.+ -.++|-|++++.- +... .+..|.|+.. T Consensus 66 p~~~~~~~~~~~~~~~----~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r-~~~G---------~~~~L~~l~~ 131 (409) T protein:vir:94 66 PLKMYEDYKVVNTEVS----DLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER-DIYH---------QPSKLFLLNP 131 (409) T ss_pred ceeEeecccccchhHH----HHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEE-CCCC---------cEEEEEEEcC Confidence 8888655443332211 1121 11111111223333332 3567877777643 2211 1334555554 Q ss_pred ccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 157 GSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSG 232 (449) Q Consensus 157 ~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a 232 (449) ..+++.. | .-+.+.+|.+... .+..+.++++.|+||... ...|.|.+..+.+.+.....+... T Consensus 132 ~~v~v~~---~----~~~~~~~y~~~~~----~g~~~~~~~~dvih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~-- 198 (409) T protein:vir:94 132 DVVEMLI---E----NQSRELYYSIHAA----TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTF-- 198 (409) T ss_pred ceeEEEE---e----CCCcEEEEEEEcC----CceEEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHH-- Confidence 4443321 1 1134566777522 234567899999999642 245888887766544332221110 Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc-ceeecCCCceEEeecccC--ChHHHHHH Q lcl|Aclame:pro 233 ESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND-VLMTTQGATVTPLVTSVA--DPTATYNV 309 (449) Q Consensus 233 ~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ed~~~~~~~ls--gl~d~~~~ 309 (449) .+..+. .. ..-+........++..+++.+.+....++.+ .+++..+-+|+.++.+.. .+-+.... T Consensus 199 -~~~~~~-~~----------~~~i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~ 266 (409) T protein:vir:94 199 -NLTEMQ-KP----------DSFMLKYGSNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENL 266 (409) T ss_pred -HHHhcC-CC----------CeeEEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHH Confidence 011000 00 0001111122334455555555444333433 445556778988876643 45566667 Q ss_pred HHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---CCCCceEEe--CCC Q lcl|Aclame:pro 310 NLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIID---AVAKKAVIW--DDL 383 (449) Q Consensus 310 ~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~---~~~~~~~~f--~pL 383 (449) ..++||.+.+||-.+|-+...+..++.+ -.+.||..+ +.|+.+.+..-+-..+.. ...+..|+| .+| T Consensus 267 ~~~~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~~f~~~~-------l~P~~~~ie~~ln~~Ll~~~~~~~~~~i~fd~~~l 339 (409) T protein:vir:94 267 TRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHT-------LLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSY 339 (409) T ss_pred HHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhCCcccccCcceEEeechhh Confidence 7889999999998877554444334434 345666543 567766665444443332 222444554 577 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--C--------CCCCCCc-chhhcccccCC Q lcl|Aclame:pro 384 NEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--E--------PLGEEDG-DEEDKATDSAA 449 (449) Q Consensus 384 ~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~--------~~~~~~~-~ee~~~~~~~a 449 (449) ...|.++++ +++.+++++| ++|++|+|+..+++|... . +.+.... +...+..|..+ T Consensus 340 l~~d~~~~~-------~~~~~~~~~G---~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~kGG~~n~ 406 (409) T protein:vir:94 340 LRADSATQA-------EVYFKAVRSG---YYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNV 406 (409) T ss_pred hccCHHHHH-------HHHHHHHhCC---CcCHHHHHHHhCCCCCCCcCeEeecccccccccchhhcccccCCCCCc Confidence 777776654 5667778887 999999999999988632 1 1110000 00011111111 No 57 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=99.50 E-value=1.6e-12 Score=85.24 Aligned_cols=401 Identities=11% Similarity=0.059 Sum_probs=175.4 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC-- Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT-- 78 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~-- 78 (449) |.+-++-+++....+.. ..--.+++...|..+.+ .. .....+...+...|..|.+.++||++.++++.+- T Consensus 42 ~~~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~-~~-----~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~ 113 (563) T protein:vir:99 42 EYQDLTKSLYGQQQAYA--EPFIEMMDTNPEFRDKR-SY-----MKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQ 113 (563) T ss_pred hHHHHHhhhccCCCcch--hhhHhhhcccccccccc-cC-----CCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhh Confidence 33333333332221110 00000111111111110 00 0112234567888999999999999999986641 Q ss_pred ---------CcEEe--cCCChhh---HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHh-ccccccEEEEEEe-cCCCc Q lcl|Aclame:pro 79 ---------NPEII--EGDDADD---SEDETSWEKKSKQVFTN-----RLWRSFAEADRR-RLVGRYAGILLHI-RDEKD 137 (449) Q Consensus 79 ---------~~~i~--~~~~~~~---~~~~~~~e~~~~~l~~~-----~~~~~~~ea~~~-~rl~Gga~i~i~i-~d~~~ 137 (449) ++.|. ..+.... ......++..+..+... .-+..|.+.+.. ..++|.|++++.+ +++.. T Consensus 114 ~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G 193 (563) T protein:vir:99 114 PARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKT 193 (563) T ss_pred hhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCC Confidence 12221 1111111 11111122111111110 011223333333 3577878776654 34321 Q ss_pred ccccccccCceeeEEEeccccCChhhhhcccccccc-CCceeEEeeecccCCCccceEEccceeeeccC-------CCCC Q lcl|Aclame:pro 138 WNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTY-GQPKLWKYTERLPNGSSRRVDIHPDRVFILGD-------YSED 209 (449) Q Consensus 138 ~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~y-g~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~-------~~~~ 209 (449) .+..|.++....+++.. |....-| +...+|++. . +.....+-++.+|++.- .... T Consensus 194 ---------~~~~L~pl~p~~V~v~~---~~~g~~~~~~~~y~~~~----~-g~~~~~~~~~evI~~~~~~~~d~~~~~~ 256 (563) T protein:vir:99 194 ---------KLEKFIAVDPSTIFYAT---DKKGKIIKGGKRFVQVV----D-KRVVASFTSRELAMGIRNPRTELSSSGY 256 (563) T ss_pred ---------ceEEEEEeCCceeEEEE---CCCCceeccceeEEEEe----C-CceeEEecCcceEEEeccCCCCcccCcc Confidence 23445555554444321 1111112 222333332 1 11122334444443321 1345 Q ss_pred cchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh-hhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc---c-- Q lcl|Aclame:pro 210 AIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQL-NVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN---D-- 283 (449) Q Consensus 210 G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~-- 283 (449) |.|.++.+...+.....+....+. ++++....- .+++.. .....++..+++.+.+....++. + T Consensus 257 G~Spi~~a~~~i~~~~~~~~~~~~-~f~ng~~p~giL~~~~----------~~~ls~e~~~~~~~~~~~~~~G~~nagk~ 325 (563) T protein:vir:99 257 GLSEVEIAMKEFIAYNNTESFNDR-FFSHGGTTRGILQIRS----------DQQQSQHALENFKREWKSSLSGINGSWQI 325 (563) T ss_pred cchHHHHHHHHHHHHHHHHHHHHH-HHHccCCCceEEEeCC----------CCCCCHHHHHHHHHHHHHHhccccccccc Confidence 999999998877655554433332 233322110 011100 01123555566655555544432 1 Q ss_pred ceeecCCCceEEeecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCc-cccccch---h--HHHHHHHHHHHHHhhhH Q lcl|Aclame:pro 284 VLMTTQGATVTPLVTSVAD--PTATYNVNLQTAAAGVDIPTRILIGNQQ-AERSSTE---D--QKYFNARCQSRRVDLSF 355 (449) Q Consensus 284 ~~l~~~~ed~~~~~~~lsg--l~d~~~~~~~~iaaas~IP~t~L~Gqs~-gg~~s~e---D--~~nyyd~I~~~Qe~~~~ 355 (449) .+++..+-+|+.++.+... +-+......+.||.+.+||-.+| |-.. ++..++. . ..|.-..-...-+..+. T Consensus 326 ~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~l-G~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~ 404 (563) T protein:vir:99 326 PVVMADDIKFVNMTPTANDMQFEKWLNYLINIISALYGIDPAEI-GFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQ 404 (563) T ss_pred eEEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHc-cccccccccccccccchhhccHHHHHHHHHHHHHH Confidence 2445667789888876543 55777789999999999997666 6432 2221111 1 11111111112223456 Q ss_pred HHHHHHHHHHHHhcCCC-CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--CC Q lcl|Aclame:pro 356 EIEDFCDKLIELKIIDA-VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--EP 432 (449) Q Consensus 356 p~~~~l~~l~~~~~~~~-~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~~ 432 (449) |+++.+...+-..+... -..+.++| ...+-+.+++... ...++++| ++|++|+|+..+++|... .. T Consensus 405 P~l~~ie~~ln~~L~~~~~~~~~~~f---~r~D~~~~~e~~~-----~~~~~~~G---~lT~NE~R~~~gl~Pi~gGD~~ 473 (563) T protein:vir:99 405 PLLRFIEDLVNRHIISEYGDKYTFQF---VGGDTKSATDKLN-----ILKLETQI---FKTVNEAREEQGKKPIEGGDII 473 (563) T ss_pred HHHHHHHHHHHhhhchhcccccEEEe---ccCCHHHHHHHHH-----HHHHhcCC---ccCHHHHHHHhCCCCCCCccee Confidence 66666665444333321 22455555 3445555555332 22356666 899999999999987532 10 Q ss_pred C------------C---------------------------CCCcchhhcccccCC Q lcl|Aclame:pro 433 L------------G---------------------------EEDGDEEDKATDSAA 449 (449) Q Consensus 433 ~------------~---------------------------~~~~~ee~~~~~~~a 449 (449) + . +.+.+.+....++.. T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (563) T protein:vir:99 474 LDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDKEI 529 (563) T ss_pred ecccccccccccccccCCCccccchhhhhcccccCCCCCCCCCCCCCCCCCCcccc Confidence 0 0 000000000000000 No 58 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=99.50 E-value=1.6e-12 Score=85.24 Aligned_cols=401 Identities=11% Similarity=0.059 Sum_probs=175.4 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC-- Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT-- 78 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~-- 78 (449) |.+-++-+++....+.. ..--.+++...|..+.+ .. .....+...+...|..|.+.++||++.++++.+- T Consensus 42 ~~~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~-~~-----~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~ 113 (563) T protein:vir:95 42 EYQDLTKSLYGQQQAYA--EPFIEMMDTNPEFRDKR-SY-----MKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQ 113 (563) T ss_pred hHHHHHhhhccCCCcch--hhhHhhhcccccccccc-cC-----CCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhh Confidence 33333333332221110 00000111111111110 00 0112234567888999999999999999986641 Q ss_pred ---------CcEEe--cCCChhh---HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHh-ccccccEEEEEEe-cCCCc Q lcl|Aclame:pro 79 ---------NPEII--EGDDADD---SEDETSWEKKSKQVFTN-----RLWRSFAEADRR-RLVGRYAGILLHI-RDEKD 137 (449) Q Consensus 79 ---------~~~i~--~~~~~~~---~~~~~~~e~~~~~l~~~-----~~~~~~~ea~~~-~rl~Gga~i~i~i-~d~~~ 137 (449) ++.|. ..+.... ......++..+..+... .-+..|.+.+.. ..++|.|++++.+ +++.. T Consensus 114 ~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G 193 (563) T protein:vir:95 114 PARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKT 193 (563) T ss_pred hhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCC Confidence 12221 1111111 11111122111111110 011223333333 3577878776654 34321 Q ss_pred ccccccccCceeeEEEeccccCChhhhhcccccccc-CCceeEEeeecccCCCccceEEccceeeeccC-------CCCC Q lcl|Aclame:pro 138 WNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTY-GQPKLWKYTERLPNGSSRRVDIHPDRVFILGD-------YSED 209 (449) Q Consensus 138 ~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~y-g~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~-------~~~~ 209 (449) .+..|.++....+++.. |....-| +...+|++. . +.....+-++.+|++.- .... T Consensus 194 ---------~~~~L~pl~p~~V~v~~---~~~g~~~~~~~~y~~~~----~-g~~~~~~~~~evI~~~~~~~~d~~~~~~ 256 (563) T protein:vir:95 194 ---------KLEKFIAVDPSTIFYAT---DKKGKIIKGGKRFVQVV----D-KRVVASFTSRELAMGIRNPRTELSSSGY 256 (563) T ss_pred ---------ceEEEEEeCCceeEEEE---CCCCceeccceeEEEEe----C-CceeEEecCcceEEEeccCCCCcccCcc Confidence 23445555554444321 1111112 222333332 1 11122334444443321 1345 Q ss_pred cchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh-hhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc---c-- Q lcl|Aclame:pro 210 AIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQL-NVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN---D-- 283 (449) Q Consensus 210 G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~-- 283 (449) |.|.++.+...+.....+....+. ++++....- .+++.. .....++..+++.+.+....++. + T Consensus 257 G~Spi~~a~~~i~~~~~~~~~~~~-~f~ng~~p~giL~~~~----------~~~ls~e~~~~~~~~~~~~~~G~~nagk~ 325 (563) T protein:vir:95 257 GLSEVEIAMKEFIAYNNTESFNDR-FFSHGGTTRGILQIRS----------DQQQSQHALENFKREWKSSLSGINGSWQI 325 (563) T ss_pred cchHHHHHHHHHHHHHHHHHHHHH-HHHccCCCceEEEeCC----------CCCCCHHHHHHHHHHHHHHhccccccccc Confidence 999999998877655554433332 233322110 011100 01123555566655555544432 1 Q ss_pred ceeecCCCceEEeecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCc-cccccch---h--HHHHHHHHHHHHHhhhH Q lcl|Aclame:pro 284 VLMTTQGATVTPLVTSVAD--PTATYNVNLQTAAAGVDIPTRILIGNQQ-AERSSTE---D--QKYFNARCQSRRVDLSF 355 (449) Q Consensus 284 ~~l~~~~ed~~~~~~~lsg--l~d~~~~~~~~iaaas~IP~t~L~Gqs~-gg~~s~e---D--~~nyyd~I~~~Qe~~~~ 355 (449) .+++..+-+|+.++.+... +-+......+.||.+.+||-.+| |-.. ++..++. . ..|.-..-...-+..+. T Consensus 326 ~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~l-G~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~ 404 (563) T protein:vir:95 326 PVVMADDIKFVNMTPTANDMQFEKWLNYLINIISALYGIDPAEI-GFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQ 404 (563) T ss_pred eEEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHc-cccccccccccccccchhhccHHHHHHHHHHHHHH Confidence 2445667789888876543 55777789999999999997666 6432 2221111 1 11111111112223456 Q ss_pred HHHHHHHHHHHHhcCCC-CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--CC Q lcl|Aclame:pro 356 EIEDFCDKLIELKIIDA-VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--EP 432 (449) Q Consensus 356 p~~~~l~~l~~~~~~~~-~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~~ 432 (449) |+++.+...+-..+... -..+.++| ...+-+.+++... ...++++| ++|++|+|+..+++|... .. T Consensus 405 P~l~~ie~~ln~~L~~~~~~~~~~~f---~r~D~~~~~e~~~-----~~~~~~~G---~lT~NE~R~~~gl~Pi~gGD~~ 473 (563) T protein:vir:95 405 PLLRFIEDLVNRHIISEYGDKYTFQF---VGGDTKSATDKLN-----ILKLETQI---FKTVNEAREEQGKKPIEGGDII 473 (563) T ss_pred HHHHHHHHHHHhhhchhcccccEEEe---ccCCHHHHHHHHH-----HHHHhcCC---ccCHHHHHHHhCCCCCCCccee Confidence 66666665444333321 22455555 3445555555332 22356666 899999999999987532 10 Q ss_pred C------------C---------------------------CCCcchhhcccccCC Q lcl|Aclame:pro 433 L------------G---------------------------EEDGDEEDKATDSAA 449 (449) Q Consensus 433 ~------------~---------------------------~~~~~ee~~~~~~~a 449 (449) + . +.+.+.+....++.. T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (563) T protein:vir:95 474 LDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDKEI 529 (563) T ss_pred ecccccccccccccccCCCccccchhhhhcccccCCCCCCCCCCCCCCCCCCcccc Confidence 0 0 000000000000000 No 59 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=99.49 E-value=3.3e-14 Score=94.51 Aligned_cols=352 Identities=13% Similarity=0.102 Sum_probs=169.2 Q ss_pred HHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSK 102 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~ 102 (449) |+|..-.-+...... .+..+.....++ ...|..+..++++|+..+.++-+-.+.+..+.+..+. .+...++ T Consensus 1 Mg~f~~lf~~~~~~~-~~~~~~~~~~v~----~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~----~~~~ll~ 71 (395) T protein:vir:10 1 MSILEKIFKTRKDIT-YMLDLDMIEDLS----QQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKN----DVYYKLN 71 (395) T ss_pred CchhhhhhccCcccc-ccccchhccccc----hhhhhhhHHHHHHHHHHHHhhccceeEeccCCccccc----hHHHHHH Confidence 333322212111110 011111112222 2345567899999999999999988887654332221 1112111 Q ss_pred -HHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccCCceeEEe Q lcl|Aclame:pro 103 -QVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKY 181 (449) Q Consensus 103 -~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i 181 (449) +=....-+..+.+.+....+.||.++++...++ .+ -|++. ..+.+.. ..++. ...+.+ T Consensus 72 ~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-~~-~~~~~------------~~~~~~~-----~~~~~--~~~~~~ 130 (395) T protein:vir:10 72 IKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-EL-LIADS------------FYREEYA-----LYDDI--FKDVTV 130 (395) T ss_pred hccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-Ce-EecCC------------ccceeEe-----ecCcc--eeEEEE Confidence 000011122333444444556666655543332 21 11111 1111100 00110 111111 Q ss_pred eecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHH Q lcl|Aclame:pro 182 TERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLA 257 (449) Q Consensus 182 ~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~ 257 (449) . +.+....+.++.||||... ...|.|.++.+...+....+. +++... ...+. T Consensus 131 ~-----~~~~~~~~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~~--------~~~~~~-----------~~gii 186 (395) T protein:vir:10 131 K-----DYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIGA--------QLKNYQ-----------IRGIL 186 (395) T ss_pred c-----CceeeeeeccccEEEEccCCCCcccccchHHHHHHHHHHHHHHH--------HHhcCC-----------CceEE Confidence 1 1112346788899988543 235777776655444221111 111110 01111 Q ss_pred hhh-ccChHHHHHHHHHHHHHHhcc----cccee-ecCCCceEEeecccCC-------hHHHHHHHHHHHHhhhcCCcee Q lcl|Aclame:pro 258 SLY-GVSIDELQDKFNEVAGEINRG----NDVLM-TTQGATVTPLVTSVAD-------PTATYNVNLQTAAAGVDIPTRI 324 (449) Q Consensus 258 ~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~l-~~~~ed~~~~~~~lsg-------l~d~~~~~~~~iaaas~IP~t~ 324 (449) ... +...++..+++.+.+....++ -..++ ++++.+|+.++.+... +-+......++||.+.+||-.+ T Consensus 187 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~ 266 (395) T protein:vir:10 187 KSASSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGL 266 (395) T ss_pred EeCCCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHH Confidence 111 112455555565555444333 22233 4667789988776543 3445556778899999999887 Q ss_pred eeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC---CCceEEeCCCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 325 LIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV---AKKAVIWDDLNEQTGTEKLTNAKTMGE 400 (449) Q Consensus 325 L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~ 400 (449) | | |..++.+ ..++||.. .+.|+.+.++.-+-..+..+. ..+.|.+++|...+.++++ + T Consensus 267 l-~---~~~sn~e~~~~~~~~~-------~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D~~~~~-------~ 328 (395) T protein:vir:10 267 I-Y---GETADLEKNTLVFEKF-------CLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQYA-------E 328 (395) T ss_pred h-c---CcccCHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcChhhhcccceecchhhhccCHHHHH-------H Confidence 7 3 2223334 45667652 356766666654444443321 2467788888888877654 5 Q ss_pred HHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCC---------C-CCcchhhcccccCC Q lcl|Aclame:pro 401 INQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLG---------E-EDGDEEDKATDSAA 449 (449) Q Consensus 401 a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~---------~-~~~~ee~~~~~~~a 449 (449) +..+++++| ++|++|+|+..+++|..+...+ . ....+.+......+ T Consensus 329 ~~~~~~~~G---~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~ 384 (395) T protein:vir:10 329 AIDKLVSSG---SFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEKDENT 384 (395) T ss_pred HHHHHHhCC---CcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCcccccc Confidence 566677787 9999999999999986432000 0 00111111111111 No 60 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=99.49 E-value=3.3e-14 Score=94.51 Aligned_cols=352 Identities=13% Similarity=0.102 Sum_probs=169.2 Q ss_pred HHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSK 102 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~ 102 (449) |+|..-.-+...... .+..+.....++ ...|..+..++++|+..+.++-+-.+.+..+.+..+. .+...++ T Consensus 1 Mg~f~~lf~~~~~~~-~~~~~~~~~~v~----~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~----~~~~ll~ 71 (395) T protein:vir:10 1 MSILEKIFKTRKDIT-YMLDLDMIEDLS----QQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKN----DVYYKLN 71 (395) T ss_pred CchhhhhhccCcccc-ccccchhccccc----hhhhhhhHHHHHHHHHHHHhhccceeEeccCCccccc----hHHHHHH Confidence 333322212111110 011111112222 2345567899999999999999988887654332221 1112111 Q ss_pred -HHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccCCceeEEe Q lcl|Aclame:pro 103 -QVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKY 181 (449) Q Consensus 103 -~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i 181 (449) +=....-+..+.+.+....+.||.++++...++ .+ -|++. ..+.+.. ..++. ...+.+ T Consensus 72 ~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-~~-~~~~~------------~~~~~~~-----~~~~~--~~~~~~ 130 (395) T protein:vir:10 72 IKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-EL-LIADS------------FYREEYA-----LYDDI--FKDVTV 130 (395) T ss_pred hccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-Ce-EecCC------------ccceeEe-----ecCcc--eeEEEE Confidence 000011122333444444556666655543332 21 11111 1111100 00110 111111 Q ss_pred eecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHH Q lcl|Aclame:pro 182 TERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLA 257 (449) Q Consensus 182 ~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~ 257 (449) . +.+....+.++.||||... ...|.|.++.+...+....+. +++... ...+. T Consensus 131 ~-----~~~~~~~~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~~--------~~~~~~-----------~~gii 186 (395) T protein:vir:10 131 K-----DYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIGA--------QLKNYQ-----------IRGIL 186 (395) T ss_pred c-----CceeeeeeccccEEEEccCCCCcccccchHHHHHHHHHHHHHHH--------HHhcCC-----------CceEE Confidence 1 1112346788899988543 235777776655444221111 111110 01111 Q ss_pred hhh-ccChHHHHHHHHHHHHHHhcc----cccee-ecCCCceEEeecccCC-------hHHHHHHHHHHHHhhhcCCcee Q lcl|Aclame:pro 258 SLY-GVSIDELQDKFNEVAGEINRG----NDVLM-TTQGATVTPLVTSVAD-------PTATYNVNLQTAAAGVDIPTRI 324 (449) Q Consensus 258 ~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~l-~~~~ed~~~~~~~lsg-------l~d~~~~~~~~iaaas~IP~t~ 324 (449) ... +...++..+++.+.+....++ -..++ ++++.+|+.++.+... +-+......++||.+.+||-.+ T Consensus 187 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~ 266 (395) T protein:vir:10 187 KSASSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGL 266 (395) T ss_pred EeCCCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHH Confidence 111 112455555565555444333 22233 4667789988776543 3445556778899999999887 Q ss_pred eeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC---CCceEEeCCCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 325 LIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV---AKKAVIWDDLNEQTGTEKLTNAKTMGE 400 (449) Q Consensus 325 L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~ 400 (449) | | |..++.+ ..++||.. .+.|+.+.++.-+-..+..+. ..+.|.+++|...+.++++ + T Consensus 267 l-~---~~~sn~e~~~~~~~~~-------~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D~~~~~-------~ 328 (395) T protein:vir:10 267 I-Y---GETADLEKNTLVFEKF-------CLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQYA-------E 328 (395) T ss_pred h-c---CcccCHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcChhhhcccceecchhhhccCHHHHH-------H Confidence 7 3 2223334 45667652 356766666654444443321 2467788888888877654 5 Q ss_pred HHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCC---------C-CCcchhhcccccCC Q lcl|Aclame:pro 401 INQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLG---------E-EDGDEEDKATDSAA 449 (449) Q Consensus 401 a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~---------~-~~~~ee~~~~~~~a 449 (449) +..+++++| ++|++|+|+..+++|..+...+ . ....+.+......+ T Consensus 329 ~~~~~~~~G---~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~ 384 (395) T protein:vir:10 329 AIDKLVSSG---SFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEKDENT 384 (395) T ss_pred HHHHHHhCC---CcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCcccccc Confidence 566677787 9999999999999986432000 0 00111111111111 No 61 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=99.49 E-value=3.3e-14 Score=94.51 Aligned_cols=352 Identities=13% Similarity=0.102 Sum_probs=169.2 Q ss_pred HHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSK 102 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~ 102 (449) |+|..-.-+...... .+..+.....++ ...|..+..++++|+..+.++-+-.+.+..+.+..+. .+...++ T Consensus 1 Mg~f~~lf~~~~~~~-~~~~~~~~~~v~----~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~----~~~~ll~ 71 (395) T protein:vir:95 1 MSILEKIFKTRKDIT-YMLDLDMIEDLS----QQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKN----DVYYKLN 71 (395) T ss_pred CchhhhhhccCcccc-ccccchhccccc----hhhhhhhHHHHHHHHHHHHhhccceeEeccCCccccc----hHHHHHH Confidence 333322212111110 011111112222 2345567899999999999999988887654332221 1112111 Q ss_pred -HHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccCCceeEEe Q lcl|Aclame:pro 103 -QVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKY 181 (449) Q Consensus 103 -~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i 181 (449) +=....-+..+.+.+....+.||.++++...++ .+ -|++. ..+.+.. ..++. ...+.+ T Consensus 72 ~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-~~-~~~~~------------~~~~~~~-----~~~~~--~~~~~~ 130 (395) T protein:vir:95 72 IKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-EL-LIADS------------FYREEYA-----LYDDI--FKDVTV 130 (395) T ss_pred hccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-Ce-EecCC------------ccceeEe-----ecCcc--eeEEEE Confidence 000011122333444444556666655543332 21 11111 1111100 00110 111111 Q ss_pred eecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHH Q lcl|Aclame:pro 182 TERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLA 257 (449) Q Consensus 182 ~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~ 257 (449) . +.+....+.++.||||... ...|.|.++.+...+....+. +++... ...+. T Consensus 131 ~-----~~~~~~~~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~~--------~~~~~~-----------~~gii 186 (395) T protein:vir:95 131 K-----DYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIGA--------QLKNYQ-----------IRGIL 186 (395) T ss_pred c-----CceeeeeeccccEEEEccCCCCcccccchHHHHHHHHHHHHHHH--------HHhcCC-----------CceEE Confidence 1 1112346788899988543 235777776655444221111 111110 01111 Q ss_pred hhh-ccChHHHHHHHHHHHHHHhcc----cccee-ecCCCceEEeecccCC-------hHHHHHHHHHHHHhhhcCCcee Q lcl|Aclame:pro 258 SLY-GVSIDELQDKFNEVAGEINRG----NDVLM-TTQGATVTPLVTSVAD-------PTATYNVNLQTAAAGVDIPTRI 324 (449) Q Consensus 258 ~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~l-~~~~ed~~~~~~~lsg-------l~d~~~~~~~~iaaas~IP~t~ 324 (449) ... +...++..+++.+.+....++ -..++ ++++.+|+.++.+... +-+......++||.+.+||-.+ T Consensus 187 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~ 266 (395) T protein:vir:95 187 KSASSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGL 266 (395) T ss_pred EeCCCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHH Confidence 111 112455555565555444333 22233 4667789988776543 3445556778899999999887 Q ss_pred eeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC---CCceEEeCCCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 325 LIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV---AKKAVIWDDLNEQTGTEKLTNAKTMGE 400 (449) Q Consensus 325 L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~ 400 (449) | | |..++.+ ..++||.. .+.|+.+.++.-+-..+..+. ..+.|.+++|...+.++++ + T Consensus 267 l-~---~~~sn~e~~~~~~~~~-------~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D~~~~~-------~ 328 (395) T protein:vir:95 267 I-Y---GETADLEKNTLVFEKF-------CLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQYA-------E 328 (395) T ss_pred h-c---CcccCHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcChhhhcccceecchhhhccCHHHHH-------H Confidence 7 3 2223334 45667652 356766666654444443321 2467788888888877654 5 Q ss_pred HHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCC---------C-CCcchhhcccccCC Q lcl|Aclame:pro 401 INQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLG---------E-EDGDEEDKATDSAA 449 (449) Q Consensus 401 a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~---------~-~~~~ee~~~~~~~a 449 (449) +..+++++| ++|++|+|+..+++|..+...+ . ....+.+......+ T Consensus 329 ~~~~~~~~G---~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~ 384 (395) T protein:vir:95 329 AIDKLVSSG---SFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEKDENT 384 (395) T ss_pred HHHHHHhCC---CcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCcccccc Confidence 566677787 9999999999999986432000 0 00111111111111 No 62 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=99.49 E-value=7.9e-14 Score=92.41 Aligned_cols=385 Identities=13% Similarity=0.103 Sum_probs=190.9 Q ss_pred Cch-hhHHHHHhhhHHHHHHHHHHHHHHHHhhcCccc-----ccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHH Q lcl|Aclame:pro 1 MTD-KLTLAVNHALNDARMARARMGLMVPTMGLDNKR-----HSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGK 74 (449) Q Consensus 1 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r-----~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d 74 (449) |.+ |..+=.++.. --..+-+.-|. ......... +-.+..+.....++.+ .+.++..+.++|++++++ T Consensus 1 ~~~~~~~~~~~~~~--g~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~al~~~~v~~cv~~Ia~~ 73 (424) T protein:vir:18 1 MEEPKYTIDLRTNN--GWWARLKSWFV-GGRLVTPNQGSQTGPVSAHGYLGDSSINDE----RILQISTVWRCVSLISTL 73 (424) T ss_pred CCCCccccccCCCC--chHHHHHhhcc-ccccccccchhhccccccccccccccccHH----HhhccHHHHHHHHHHHHh Confidence 211 1110000000 00000000000 000000000 0011111112334443 345677889999999999 Q ss_pred HhcCCcEEecCCChhhHHH---HHHHHHHHH-HHHH----HHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccC Q lcl|Aclame:pro 75 CWQTNPEIIEGDDADDSED---ETSWEKKSK-QVFT----NRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGR 146 (449) Q Consensus 75 ~~r~~~~i~~~~~~~~~~~---~~~~e~~~~-~l~~----~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~ 146 (449) +-.-.+.+...++.+.... ...+...++ +=.. ..+|+.+.. .-.++|-|++++.- +... T Consensus 74 iA~lp~~vy~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~---~lll~Gnay~~i~r-~~~G--------- 140 (424) T protein:vir:18 74 TACLPLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTM---QLCFYGNAYALVDR-NSAG--------- 140 (424) T ss_pred hccCceEEEEeccCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHH---HHhhcCCeEEEEEE-CCCC--------- Confidence 9888887754332221111 111111111 0000 123333322 22467777777643 2111 Q ss_pred ceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC---CCCcchhHHHHHHHHHH Q lcl|Aclame:pro 147 GLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY---SEDAIGFLEPAYNAFVS 223 (449) Q Consensus 147 ~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~---~~~G~s~l~~~~~~l~~ 223 (449) .+..|.|+....+++.. + +.+..|++.. .+..+.++++.|+||.+. ...|.|.++.+.+.|.. T Consensus 141 ~~~~L~~l~~~~v~v~~-~--------~~~~~y~~~~-----~g~~~~~~~~eVihir~~~~dg~~G~spi~~~~~~i~~ 206 (424) T protein:vir:18 141 DVISLLPLQSANMDVKL-V--------GKKVVYRYQR-----DSEYADFSQKEIFHLKGFGFTGLVGLSPIAFACKSAGV 206 (424) T ss_pred cEEEEEEecCcceEEEE-c--------CCeEEEEEEe-----CCeEEEeccccEEEecCcCCCCcccccHHHHHHHHHHH Confidence 23445565555444321 1 2244566642 233567999999998643 24688999888877655 Q ss_pred HHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhc-cChHHHHHHHHHHHHHHhccc---cceeecCCCceEEeecc Q lcl|Aclame:pro 224 LEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYG-VSIDELQDKFNEVAGEINRGN---DVLMTTQGATVTPLVTS 299 (449) Q Consensus 224 ~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~ed~~~~~~~ 299 (449) ...+....+ -++++..+.-. +....+ ...++..+++.+.+.....+. ..+++..+-+|+.++.+ T Consensus 207 ~~~~~~~~~-~~f~ng~~~~g-----------il~~~~~~l~~e~~~~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~ 274 (424) T protein:vir:18 207 AVAMEDQQR-DFFANGAKSPQ-----------ILSTGEKVLTEQQRSQVEENFKEIAGGPVKKRLWILEAGFSTSAIGVT 274 (424) T ss_pred HHHHHHHHH-HHHhccCCcce-----------EEEeCCcCCCHHHHHHHHHHHHHHhCCcccCCceeccCCceEEecCCC Confidence 444433333 33343322111 111111 123455555555555444333 24566667789888776 Q ss_pred cC--ChHHHHHHHHHHHHhhhcCCceeeeccCccccc---cch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC Q lcl|Aclame:pro 300 VA--DPTATYNVNLQTAAAGVDIPTRILIGNQQAERS---STE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV 373 (449) Q Consensus 300 ls--gl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~---s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~ 373 (449) .. .+-+......+.||.+.|||-.+| |...++.. +.| -...||. ..+.|+.+.++.-+-..+.... T Consensus 275 ~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~t~~~sn~eq~~~~f~~-------~tl~P~~~~ie~~ln~~L~~~~ 346 (424) T protein:vir:18 275 PQDAEMMASRKFQVSELARFFGVPPHLV-GDVEKSTSWGSGIEQQNLGFLQ-------YTLQPYISRWENSIQRWLIPSK 346 (424) T ss_pred hhHHHHHHHHHHhHHHHHHHhCCCHHHh-CCCCCcccccccHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCCcc Confidence 44 345667778889999999997655 75444332 123 3445553 2456766666554444433221 Q ss_pred --CC--ceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--CC-----C-CCCCcchh Q lcl|Aclame:pro 374 --AK--KAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--EP-----L-GEEDGDEE 441 (449) Q Consensus 374 --~~--~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~~-----~-~~~~~~ee 441 (449) .+ +.|.+..|...|.+++++ ++.+++++| ++|++|+|+..+++|... +. . +.....+. T Consensus 347 ~~~~~~~~fd~~~llr~d~~~r~~-------~~~~~~~~G---~~T~NE~R~~~gl~pi~ggD~~~~~~n~~~l~~~~~~ 416 (424) T protein:vir:18 347 DVGRLHAEHNLDGLLRGDSASRAA-------FMKAMGESG---LRTINEMRRTDNMPPLPGGDVAMRQAQYVPITDLGTN 416 (424) T ss_pred ccCCeEEEEechhhhccCHHHHHH-------HHHHHHhCC---CcCHHHHHHHhCCCCCCCcCeeeeccCccchhhhhcc Confidence 23 455667888888877654 455677877 999999999999998632 11 0 11112233 Q ss_pred hcccccCC Q lcl|Aclame:pro 442 DKATDSAA 449 (449) Q Consensus 442 ~~~~~~~a 449 (449) ..-.++.| T Consensus 417 ~~~~~n~a 424 (424) T protein:vir:18 417 KEPRNNGA 424 (424) T ss_pred CCccccCC Confidence 44555566 No 63 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=99.49 E-value=3.7e-13 Score=88.77 Aligned_cols=400 Identities=12% Similarity=0.041 Sum_probs=184.4 Q ss_pred CchhhHHHHHh-----hhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCC-HHHHHHHHHcCchhHHHHhhhHHH Q lcl|Aclame:pro 1 MTDKLTLAVNH-----ALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVT-YENLYSLYRRGGIAHGAVEKLVGK 74 (449) Q Consensus 1 ~~~~~~~~v~~-----~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~-~~~l~~~Y~~~~l~r~iVd~pa~d 74 (449) .++++. +.+- ..+..+.-+..+.+... +-.. +.......|...+ -.-+.+....+..+..+|++.+++ T Consensus 64 ~~~~~~-~~kk~~i~~pfkkk~~~~~~d~f~~s--~es~---s~vtsls~pdaf~~vnVs~~~AlknsaV~scI~~IA~s 137 (945) T protein:vir:10 64 IFRKNQ-VLKKEKIIVPYNHQEPPFKFNLFEYS--PESL---MYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKK 137 (945) T ss_pred eehhhh-HHHhhcccccccccccchhhhhhhcc--Cccc---eecccccCccceeeehhhhhhhhccHHHHHHHHHHHhh Confidence 444444 1111 11111111111211111 1000 0001111111111 112334445678889999999999 Q ss_pred HhcCCcEEecCCChhh---H-H---HHHHHHHHHH---HHH-HHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccc Q lcl|Aclame:pro 75 CWQTNPEIIEGDDADD---S-E---DETSWEKKSK---QVF-TNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPA 142 (449) Q Consensus 75 ~~r~~~~i~~~~~~~~---~-~---~~~~~e~~~~---~l~-~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl 142 (449) .-.-.+++....+... . + ....+...++ ... ....|+.+...+... .++|-+++++.-+... T Consensus 138 IAsLPlklYrr~edG~~~~~~kk~~~~hpL~~LL~rPNp~mT~~eFwqsFl~~Lv~dLLL~GNAYieIiRd~~G------ 211 (945) T protein:vir:10 138 LTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQG------ 211 (945) T ss_pred hccCceEEEEecccCcccccccccccchHHHHHHhCCCcccChhHHHHHHHHHHHHHHhhcCCeEEEEEECCCC------ Confidence 9888887643221110 0 0 0111111111 000 013445455554333 4567777666432111 Q ss_pred cccCceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeec------cCC-CCCcchhHH Q lcl|Aclame:pro 143 TKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFIL------GDY-SEDAIGFLE 215 (449) Q Consensus 143 ~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~------~~~-~~~G~s~l~ 215 (449) .+..|.|++...+++.. |+ +-+.+..|... . + +.....++++-+|++ .+. .+.|.|-++ T Consensus 212 ----~ii~L~pLdPs~Vti~~---dd---DG~~~y~Yv~~-i--d-G~~~~~v~a~DvIlhirn~s~DG~~~GyGlSPIe 277 (945) T protein:vir:10 212 ----NLVAITPVDGTTIKPIL---SE---DTGIVVGYVQE-V--D-GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIE 277 (945) T ss_pred ----cEEEEEEECCcceEEEE---cC---CCcEEEEEEEe-c--C-CceEEEecCCceEEEeccCCCCcccccCCchHHH Confidence 13445555555554321 11 11222223221 1 1 122234455554432 222 234888899 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhh---hhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc---ceeecC Q lcl|Aclame:pro 216 PAYNAFVSLEKVEGGSGESFLKNAAR---QLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND---VLMTTQ 289 (449) Q Consensus 216 ~~~~~l~~~~~~~~~~a~l~~~~~~~---~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~ 289 (449) .+.+.+.....+....+..+.++..+ .++++.. ........+....+..+++.+......+|.+ .+++++ T Consensus 278 aa~~aI~~alAaek~aar~FskNGa~PsGILsvkg~----~~~d~k~~~~LseEq~erlKe~wee~~sG~NnG~piVLde 353 (945) T protein:vir:10 278 ILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPP----SYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGG 353 (945) T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecCc----cccccccccccCHHHHHHHHHHHHHHhCCcccccceecCC Confidence 88887765444444344433333222 1221100 0000011122334555555555554444322 245667 Q ss_pred CCceEEeecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcc-ccccch-hHHHHHHH-HHHHHHhhhHHHHHHHHHH Q lcl|Aclame:pro 290 GATVTPLVTSVA--DPTATYNVNLQTAAAGVDIPTRILIGNQQA-ERSSTE-DQKYFNAR-CQSRRVDLSFEIEDFCDKL 364 (449) Q Consensus 290 ~ed~~~~~~~ls--gl~d~~~~~~~~iaaas~IP~t~L~Gqs~g-g~~s~e-D~~nyyd~-I~~~Qe~~~~p~~~~l~~l 364 (449) +.+|+.++.+.. .+-+.......+||++.|||-..| |-..+ ..++.+ -.++||.. |. |+...+... T Consensus 354 Gmef~pLs~s~~DaQfLEsrkfs~eeIArAFGVPP~lL-G~~e~st~SNiEqq~~~Fv~~tL~--------Pil~~IEqe 424 (945) T protein:vir:10 354 KFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDV-GILEGSNKATAEVMASLTKAKGLE--------PLMATISKG 424 (945) T ss_pred CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHc-ccCCCCCcchHHHHHHHHHHHHHH--------HHHHHHHHH Confidence 778998887654 445777778889999999998777 53332 223333 45666643 44 444444333 Q ss_pred HHHhcCCC--CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--CC-------- Q lcl|Aclame:pro 365 IELKIIDA--VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--EP-------- 432 (449) Q Consensus 365 ~~~~~~~~--~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~~-------- 432 (449) +-..+... ..++.|+|+.+.-++.++ +++++.+++++| ++|++|+|+..+++|... .. T Consensus 425 LNrkLl~~~eg~~i~fdFd~ldl~D~ks-------raEal~kli~sG---iLTiNEvRe~lGLpPIeGGD~lli~~nn~~ 494 (945) T protein:vir:10 425 FDEVVSEFRNEKDIKLWFKEDDLEKERD-------WWNIIQGQLNTG---FRSINEARMEKGLEPVPWGDVPFSGLRNWK 494 (945) T ss_pred HHHhccccccCceeEEEecchhccCHHH-------HHHHHHHHHhCC---CcCHHHHHHHhCCCCCCCcceeeecccccc Confidence 32222221 246899999998887654 456677788888 999999999998887531 10 Q ss_pred -CCC----------------------CCcch--hhcc----cccCC Q lcl|Aclame:pro 433 -LGE----------------------EDGDE--EDKA----TDSAA 449 (449) Q Consensus 433 -~~~----------------------~~~~e--e~~~----~~~~a 449 (449) .++ +.+++ ++.. .++++ T Consensus 495 P~d~~~ka~~ga~p~q~aq~~~dqp~~kGGe~dEns~~psE~kda~ 540 (945) T protein:vir:10 495 PEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPSEQKNAG 540 (945) T ss_pred ccccccccccCCCCcccccCCCCCCCCCCCCCCCCCCCCCcccchH Confidence 000 00000 0000 00000 No 64 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=99.48 E-value=1.9e-13 Score=90.32 Aligned_cols=393 Identities=14% Similarity=0.081 Sum_probs=186.3 Q ss_pred CchhhHHHHHhhhHHHHH--H---HHHHHHHHHHhhc-Ccc-cccchhccC-----CcccCCHHHHHHHHHcCchhHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARM--A---RARMGLMVPTMGL-DNK-RHSAWCEYG-----FPELVTYENLYSLYRRGGIAHGAV 68 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~--~---~~~~~~~~~~~g~-~t~-r~~~~~~~~-----~~~~~~~~~l~~~Y~~~~l~r~iV 68 (449) |+++++- ......+++. . .....+++. .|- ... .+..+..+. ....++.+ -+.++..+.++| T Consensus 3 l~d~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~~v~~~----~al~~~~V~~ci 76 (431) T protein:vir:10 3 LFDFIRR-EKQPEAQARPHVEPSFQASTPTTSI-PGETFEGLDDPRLKEYIRRGELNGGTGRET----RALRNMAVLRCV 76 (431) T ss_pred chhhhhc-Ccccccccccccccccccccccccc-cccccccccchHHHHhhccCccCcceechh----hhhccHHHHHHH Confidence 6777652 1111100000 0 000000000 000 000 000000000 01122221 223578889999 Q ss_pred hhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HhccccccEEEEEEecCCCcccccccccC Q lcl|Aclame:pro 69 EKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQ-VFTNRLWRSFAEAD-RRRLVGRYAGILLHIRDEKDWNLPATKGR 146 (449) Q Consensus 69 d~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~-l~~~~~~~~~~ea~-~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~ 146 (449) ++.++++-.-.+.+...++..+......+...++. =....-+..|.+.+ ..-.|+|-|+++|.-+.| T Consensus 77 ~~Ia~~iA~lp~~v~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~g----------- 145 (431) T protein:vir:10 77 TLISGTIGMLPMNLISSDDSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSGN----------- 145 (431) T ss_pred HHHHHhhccCceEEEEecCceeeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCC----------- Confidence 99999998888887554322211111112222210 00000011222222 222466778777754322 Q ss_pred ceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC---CCCcchhHHHHHHHHHH Q lcl|Aclame:pro 147 GLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY---SEDAIGFLEPAYNAFVS 223 (449) Q Consensus 147 ~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~---~~~G~s~l~~~~~~l~~ 223 (449) .+..+.|+.+..+++... .+ |.+ +|.+... .+..+.+..+.|+||.+. ...|.|.++.+.+.|.. T Consensus 146 ~~~~L~pl~~~~v~~~~~-~~------~~~-~y~~~~~----~g~~~~~~~~dViHir~~~~dg~~G~spi~~~~~~i~~ 213 (431) T protein:vir:10 146 RPIRLIPMDRGSAKGRLT-ST------WQI-VYDYTTP----TGDKIELPAREVFHLRDLSIDGVSGVSRVKLSGNALEL 213 (431) T ss_pred ceEEEEEEcCceeEEEEc-CC------CeE-EEEEEeC----CceEEEEchhhEEEecCcCCCCcccccHHHHHHHHHHH Confidence 223344555444433211 11 333 3444321 233567888999998643 34588999988877654 Q ss_pred HHHHhhHHHHHHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeec Q lcl|Aclame:pro 224 LEKVEGGSGESFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVT 298 (449) Q Consensus 224 ~~~~~~~~a~l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~ 298 (449) ...+..... -++++..+. ..++ ..+...++..+++.+.+....++. ..++++.+-+|+.++. T Consensus 214 ~~~~~~~~~-~~f~ng~~p~gil~------------~~~~ls~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~ 280 (431) T protein:vir:10 214 AEQAERAAS-RTFRTGVMAGGAIE------------VPKELSDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSN 280 (431) T ss_pred HHHHHHHHH-HHHhccCCccEEEe------------cCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccC Confidence 444433333 334433221 1111 112233445555555544332321 2356666778888876 Q ss_pred ccC--ChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC--C Q lcl|Aclame:pro 299 SVA--DPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA--V 373 (449) Q Consensus 299 ~ls--gl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~--~ 373 (449) +.. .+-+.......+||.+.|||-.+|-+...+..++.| -...|+.. .+.|+.+.++.-+-..+... . T Consensus 281 ~~~d~q~le~r~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~eq~~~~f~~~-------tL~P~~~~ie~~ln~~Ll~~~~~ 353 (431) T protein:vir:10 281 TAASAQQIENRNHQIEEVARMYGVPRPLLMMDDTSWGSGIEQLAIFFIQY-------GLSHWFVSWEQAAARAFLPEKML 353 (431) T ss_pred ChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCCccccHHHHHHHHHHH-------HHHHHHHHHHHHHHhhccChhhc Confidence 543 344556667889999999999877554434333333 23455543 35666666655444443321 1 Q ss_pred CC--ceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC-ccccCHHHHHHHhcCCCCCCCCCCC-----CCcchhhccc Q lcl|Aclame:pro 374 AK--KAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGD-NPAFSREEIRTAAGYDNDDEEPLGE-----EDGDEEDKAT 445 (449) Q Consensus 374 ~~--~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~-~~~~~~~e~r~~~~~~~~~~~~~~~-----~~~~ee~~~~ 445 (449) .+ +.|.+..|...|.++++ +++++++++|. .+.+|++|+|+..+++|.+++..+. -.....+.+. T Consensus 354 ~~~~~~fd~~~llr~d~~~r~-------~~~~~~~~~G~~~g~lT~NE~R~~~gl~p~~~~~gD~~~~p~n~~~~~~~~~ 426 (431) T protein:vir:10 354 GQRQFKFNEGALLRGTLNDQA-------AFFSKALGAGGQSPWMKQNEVREMLDLPRADDPVADQLRNPMTQKQKGSGDE 426 (431) T ss_pred CCceEEEechhhhccCHHHHH-------HHHHHHHhcccccCccCHHHHHHHhCCCCCCCccccceecccccccCCCCCC Confidence 23 45556677777766655 45566777664 3468999999999999864421111 0001111111 Q ss_pred ccCC Q lcl|Aclame:pro 446 DSAA 449 (449) Q Consensus 446 ~~~a 449 (449) .+++ T Consensus 427 ~p~~ 430 (431) T protein:vir:10 427 PPAT 430 (431) T ss_pred CCCC Confidence 1222 No 65 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=99.48 E-value=2.1e-13 Score=90.11 Aligned_cols=380 Identities=12% Similarity=0.039 Sum_probs=180.7 Q ss_pred Cc-hhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCC Q lcl|Aclame:pro 1 MT-DKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTN 79 (449) Q Consensus 1 ~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~ 79 (449) |+ +|.. .+..-.... ...+......|+.. ..+ ...+|.+. +. ++..+.++|++.++++-+-. T Consensus 1 m~~~~~~--~~~~~~~~~---~~~~~~~~~~g~~~---s~~-----~~~v~~~~---al-~~~~v~~cv~~ia~~ia~lp 63 (419) T protein:vir:80 1 MFFSRQL--LSNLGQTQP---GSGGWVSALLGSAR---SEA-----GQVVTPAS---AL-SLTVLQNCVTLLAESIAQLP 63 (419) T ss_pred CCccccc--ccccCcCCC---CcchhhHHhhcccc---ccc-----CcccChHH---hh-ccHHHHHHHHHHHHhhccCc Confidence 55 2211 111000000 00111111111111 111 12334332 22 45678899999999999988 Q ss_pred cEEecCCChhhHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEecc Q lcl|Aclame:pro 80 PEIIEGDDADDSE-DETSWEKKSK-QVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWA 156 (449) Q Consensus 80 ~~i~~~~~~~~~~-~~~~~e~~~~-~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~ 156 (449) +.+...++..... ....+...++ +=....-...+.+.+.+. -++|-|++++.- ++.. .+..|.|+.. T Consensus 64 ~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r-~~~G---------~~~~L~~i~~ 133 (419) T protein:vir:80 64 VELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDR-DQDG---------VIQGLYPLDN 133 (419) T ss_pred eEEEEecCCCcccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEE-CCCC---------cEEEEEEecC Confidence 8875543322111 1111212221 100001112233333333 456766666543 3221 1344555554 Q ss_pred ccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccC---CCCCcchhHHHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 157 GSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD---YSEDAIGFLEPAYNAFVSLEKVEGGSGE 233 (449) Q Consensus 157 ~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~---~~~~G~s~l~~~~~~l~~~~~~~~~~a~ 233 (449) ..+++. .+. .|.+ .|++... ..++++-|+|+.. +...|.|.++.+...+.....+..... T Consensus 134 ~~v~i~---~~~----~~~~-~y~~~~~--------~~~~~~~i~h~~~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~- 196 (419) T protein:vir:80 134 EAVTVM---KGP----DLKP-MYRVAGA--------DPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAG- 196 (419) T ss_pred ceEEEE---ECC----CceE-EEEEcCc--------cccchhheEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHH- Confidence 444432 111 1333 3555311 1245555555532 235799999998887655454433332 Q ss_pred HHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccC--ChHHH Q lcl|Aclame:pro 234 SFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVA--DPTAT 306 (449) Q Consensus 234 l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~ls--gl~d~ 306 (449) -++++.... ..++... + ..+...++..+++.+.+....++. ..++++.+.+|+.++.+.. .+-+. T Consensus 197 ~~f~ng~~~~gil~~~~--~------~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~ 268 (419) T protein:vir:80 197 KSFMNGTALSGVIERPT--D------APALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDA 268 (419) T ss_pred HHHhcCCCccEEEEecC--C------CCcccCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEeccCChhhHHHHHH Confidence 333332221 1111100 0 011123444555555554444332 2456666778998887654 35677 Q ss_pred HHHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC--CCC--ceEEeC Q lcl|Aclame:pro 307 YNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA--VAK--KAVIWD 381 (449) Q Consensus 307 ~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~--~~~--~~~~f~ 381 (449) .....+.||.+.|||..+|-....+..++.+ -.+.||..+ +.|+.+.+..-+-..+..+ ..+ +.|.+. T Consensus 269 ~~~~~~~Ia~~fgVPp~llg~~~~~t~~n~e~~~~~f~~~~-------l~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~ 341 (419) T protein:vir:80 269 LRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYT-------LLPWVKRHEQAKTRDLLLPSERKQYFIEYNLA 341 (419) T ss_pred HHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHHHHHHH-------HHHHHHHHHHHHhhhccCccccCCeEEEEech Confidence 7788899999999998766443334444444 345666543 5666666655444443322 124 455555 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCC--CCCC-------CCC-C--cchhhcccccCC Q lcl|Aclame:pro 382 DLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDD--EEPL-------GEE-D--GDEEDKATDSAA 449 (449) Q Consensus 382 pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~--~~~~-------~~~-~--~~ee~~~~~~~a 449 (449) .|...|.+++++ +..++++.| ++|++|+|+..+++|.. +... ... . ...+....+++. T Consensus 342 ~l~~~d~~~~~~-------~~~~~~~~G---~~T~NE~R~~~g~~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 411 (419) T protein:vir:80 342 GLLRGDQSSRYA-------AYAVGRQWG---WLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAAL 411 (419) T ss_pred hhhccCHHHHHH-------HHHHHHhCC---CcCHHHHHHHhCCCCCCCcceeeeccccccccccccccCCCCCchhhhH Confidence 777777777655 555677887 99999999999998852 2111 000 0 011111112211 No 66 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=99.46 E-value=1.6e-13 Score=90.68 Aligned_cols=380 Identities=12% Similarity=0.027 Sum_probs=181.1 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) -+.|...+-.... .....+......|.+.. .+ ...+|.+. + .++.-+.++|++.++++-.-.+ T Consensus 2 ~~~r~~~~~~~~~-----~~~~~~~~~~~~g~~~s---~~-----~~~vt~~~---a-l~~~~v~~~v~~ia~~iA~lp~ 64 (419) T protein:vir:14 2 FFSRQLLSNLGQT-----QMSAGGWVSALLGSSRS---DS-----GQVVTPAS---A-LALTVLQNCVTLLAESIAQLPI 64 (419) T ss_pred ccccccccccccc-----ccCcchhhHHhhcCCCc---cC-----CcccchHH---h-hccHHHHHHHHHHHHhhccCce Confidence 1222221100000 00112222222222211 11 12334332 2 3466789999999999988888 Q ss_pred EEecCCChhhHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccc Q lcl|Aclame:pro 81 EIIEGDDADDSE-DETSWEKKSK-QVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAG 157 (449) Q Consensus 81 ~i~~~~~~~~~~-~~~~~e~~~~-~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~ 157 (449) .+...++.+... ....+...++ +=....-+..+.+.+.+. -++|-+++++.- ++.. .+..|.|+... T Consensus 65 ~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r-~~~G---------~~~~l~pl~~~ 134 (419) T protein:vir:14 65 ELYERSGEDRKPATDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDR-DSDG---------VIQGLYPLDNE 134 (419) T ss_pred EEEEecCCccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEE-CCCC---------cEEEEEEecCc Confidence 775443222111 1111111111 000000112233333333 456777766643 2211 13345555444 Q ss_pred cCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccC---CCCCcchhHHHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 158 SLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD---YSEDAIGFLEPAYNAFVSLEKVEGGSGES 234 (449) Q Consensus 158 ~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~---~~~~G~s~l~~~~~~l~~~~~~~~~~a~l 234 (449) .+++.. +.| |.+ .|++... ..++.+-|+|+.. +...|.|.++.+.+.+.....+...... T Consensus 135 ~v~v~~-~~~------~~~-~y~~~~~--------~~~~~~~i~h~~~~~~dg~~G~s~i~~~~~~i~~~~~~~~~~~~- 197 (419) T protein:vir:14 135 AVTVMR-GSD------LKP-VYRVRGS--------DPMPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGK- 197 (419) T ss_pred eEEEEE-CCC------ceE-EEEEccC--------cccchhheeEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHH- Confidence 444321 111 222 4555421 1133344444432 2357999999888876554444333332 Q ss_pred HHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccCC--hHHHH Q lcl|Aclame:pro 235 FLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVAD--PTATY 307 (449) Q Consensus 235 ~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~lsg--l~d~~ 307 (449) ++++.... ..+++.+. ......++..+++.+.+....++. ..++++.+-+|+.++.+... +-+.. T Consensus 198 ~f~ng~~p~gil~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~ 269 (419) T protein:vir:14 198 SFMNGTALSGVIERPKD--------APALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMTFRPLSMTNVDAALIDAL 269 (419) T ss_pred HHhccCCccEEEEecCC--------CCcccCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhhHHHHHHH Confidence 33332221 11111100 011123455566665555544442 23566667789988776543 45666 Q ss_pred HHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC--CCceEE--eCC Q lcl|Aclame:pro 308 NVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV--AKKAVI--WDD 382 (449) Q Consensus 308 ~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~--~~~~~~--f~p 382 (449) ....+.||.+.|||-.+|.....+..++.| -.+.||.. .+.|+.+.+..-+-..+..+. .++.|+ +.. T Consensus 270 ~~~~~~Ia~~fgVpp~~lg~~~~~t~s~~E~~~~~f~~~-------~L~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~~ 342 (419) T protein:vir:14 270 RLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIY-------TLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAG 342 (419) T ss_pred HHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHHHHHH-------HHHHHHHHHHHHHhhhccCccccCCeEEEEechh Confidence 778899999999998877544334334434 34555554 356776666654444443322 244444 557 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--C--------CCCCCCcchhhcccccCC Q lcl|Aclame:pro 383 LNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--E--------PLGEEDGDEEDKATDSAA 449 (449) Q Consensus 383 L~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~--------~~~~~~~~ee~~~~~~~a 449 (449) |...|.++| ++++.+++++| ++|++|+|+..+++|... . +.+...........++.| T Consensus 343 l~r~d~~~~-------~~~~~~~~~~G---~~T~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~ 409 (419) T protein:vir:14 343 LLRGDQSSR-------YAAYAVGRQWG---WLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQQLPVGKSEPTKA 409 (419) T ss_pred hhccCHHHH-------HHHHHHHHhCC---CcCHHHHHHHhCCCCCCCcCeeeeccccccccccccccCCCCCCccc Confidence 777777766 45566688888 999999999999988532 1 001100001111111222 No 67 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=99.46 E-value=4.2e-13 Score=88.45 Aligned_cols=366 Identities=12% Similarity=0.024 Sum_probs=177.1 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) ++++++.+...... .+..+....-+..... .. ....++.+ .+.+++.+.++|+++|.++-+-.+ T Consensus 3 ~f~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~-----~~~~v~~~----~al~~~~v~~~i~~ia~~ia~~p~ 66 (386) T protein:vir:49 3 IFNITNLATESPPI------NQESFFDIADSDFLAS-LN-----SSEWVSAE----NALKNSDLFSIISQLSNDLATAKI 66 (386) T ss_pred hhhhhccCCCCccc------chhhhhhhhhcccccc-cc-----CCceechh----hhhccHHHHHHHHHHHHHhhhCce Confidence 45555422211110 1111111110000000 00 01223332 234567888999999999999888 Q ss_pred EEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccEEEEEEecCCCcccccccccCceeeEEEeccccC Q lcl|Aclame:pro 81 EIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRL-VGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSL 159 (449) Q Consensus 81 ~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~r-l~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i 159 (449) ++...... ..+++-....-+..+.+.+.+.. ++|-|++++.-+ +.. .+..|.++....+ T Consensus 67 ~~~~~~~~----------~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~-~~g---------~~~~l~~i~~~~v 126 (386) T protein:vir:49 67 TTSRKQLQ----------GIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRN-DNG---------RDMKWEYLRPSQV 126 (386) T ss_pred eeccchhh----------hhhhccCCCCCHHHHHHHHHHHhhhcCCEEEEEEEC-CCC---------cEEEEEEecCcee Confidence 87532210 11111111111223334444444 467777766542 221 1234445444444 Q ss_pred ChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 160 KVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESF 235 (449) Q Consensus 160 ~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l~ 235 (449) ++... ++ +.+.+|.+..... ..+..+.++.+.||||... ...|.|.++.+...+.....+....... T Consensus 127 ~v~~~------~~-~~~~~y~~~~~~~-~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~- 197 (386) T protein:vir:49 127 SFNRL------DN-QNGLYYNITFDDP-HIAPKQHVPQNDILHFRLLSVDGGLTSVSPLMALGREFNIQKASDKLTISA- 197 (386) T ss_pred EEEEc------CC-CceEEEEEEEcCc-cccceeEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH- Confidence 43221 11 2344566643221 2234567899999999643 2469999999998876655554444433 Q ss_pred HHHHhh-hhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc-ceeecCCCceEEeecccC--ChHHHHHHHH Q lcl|Aclame:pro 236 LKNAAR-QLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND-VLMTTQGATVTPLVTSVA--DPTATYNVNL 311 (449) Q Consensus 236 ~~~~~~-~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ed~~~~~~~ls--gl~d~~~~~~ 311 (449) +++... ...+++ .+...++..++.......+..+.+ .+++..+.+|+.++.+.. .+-+...... T Consensus 198 ~~ng~~~~~il~~------------~~~~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~ 265 (386) T protein:vir:49 198 LKNALNANGILKI------------KGGGLLDFKTKVSRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTT 265 (386) T ss_pred HHccCCccEEEEe------------CCCCChHHHHHHHHHHHHhccCCCCceecCCCceEEEccCChhHHHHHHHHHHHH Confidence 333221 111111 112223333333333333333333 355566778999876654 4456778899 Q ss_pred HHHHhhhcCCceeeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHH Q lcl|Aclame:pro 312 QTAAAGVDIPTRILIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEK 391 (449) Q Consensus 312 ~~iaaas~IP~t~L~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~ 391 (449) ++||++.+||-.+|-|. ....++.+..+.||.. ..+ -.+.|+...+++ .++ ..+.+....+...+.+++ T Consensus 266 ~~Ia~~fgVPp~~lg~~-~~~~~~~~~~~~~~~~--~i~-~~l~~i~~~~~~----~l~---~~~~~~~~~~~~~d~~~~ 334 (386) T protein:vir:49 266 GQFAKVYGIPESIVGGD-GDQQSSLEMIYNIYFK--SVS-RYLRPFVSEMSK----KLS---CEVDVDISPAVDPTGSNY 334 (386) T ss_pred HHHHHHhCCCHHHhCCC-CCccchHHHHHHHHHH--HHH-HHHHHHHHHHHH----Hhc---chhcccchhhhccCHHHH Confidence 99999999998776433 2222223344444421 111 233444444433 222 235556666666666655 Q ss_pred HHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCC---------CCCCcchhhcc Q lcl|Aclame:pro 392 LTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPL---------GEEDGDEEDKA 444 (449) Q Consensus 392 Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~---------~~~~~~ee~~~ 444 (449) + .....++.+| ++|++|+|+..+..+....+. +.+-.|+.+++ T Consensus 335 ~-------~~~~~l~~~g---~~t~nE~r~~l~~~~~~~~~~~~~~~~~~~~~~gGd~~~~~ 386 (386) T protein:vir:49 335 I-------SLINSMVKSG---TLAQNQGLYILQQAEILPKELPDGKNPNRTSLKGGEINEQD 386 (386) T ss_pred H-------HHHHHHHhCC---CcCHHHHHHHHhhCCCCCCcCcchhccCCCCCCCCCCCCCC Confidence 4 4455677777 899999999764322111111 11111111111 No 68 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=99.46 E-value=2.2e-13 Score=90.03 Aligned_cols=368 Identities=15% Similarity=0.074 Sum_probs=168.9 Q ss_pred HHHHHHHhhcCcccccchhcc----CCcccC--CHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHSAWCEY----GFPELV--TYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETS 96 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~~~~~~----~~~~~~--~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~ 96 (449) |.|.. +..+..+..|..+ |+.... .+....+| ++.-+.++|++.+++.-+-.+.+.....+...+ ... T Consensus 1 m~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Al--~~~~V~~cv~~ia~~iA~lp~~~~~~~~~~~~~-~~~ 74 (417) T protein:vir:38 1 MKLFR---GLATEVDPHWADHLLDSGVIPSFRGGYLGISAL--RNSDVLTAVSIVSGDVSRFPLVITDSSTDEVID-LAN 74 (417) T ss_pred Ccccc---ccccCCCccchhhhcccccccccCCceechhhc--ccHHHHHHHHHHHHhhccCeeEEEEcCCcceec-cch Confidence 11110 1111111111111 111000 00011122 345567899999999988888775443222111 112 Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHh-ccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccC Q lcl|Aclame:pro 97 WEKKSKQ-VFTNRLWRSFAEADRR-RLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYG 174 (449) Q Consensus 97 ~e~~~~~-l~~~~~~~~~~ea~~~-~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg 174 (449) +...++. =....-+..|.+.+.+ -.|+|-|+++|.= ++.. .....+.++....+.+.. .+. | T Consensus 75 ~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r-~~~g--------~~~~~l~~l~p~~v~v~~--~~~-----~ 138 (417) T protein:vir:38 75 IEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVR-DPIT--------NEPAMFEFYAPSQTQVDT--SDP-----D 138 (417) T ss_pred HHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEE-cCCC--------CEEEEEEEeCCceEEEEE--cCC-----C Confidence 2222210 0000111123333322 2456777777653 2211 112223343333333211 111 2 Q ss_pred CceeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh Q lcl|Aclame:pro 175 QPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI 251 (449) Q Consensus 175 ~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~ 251 (449) . ..|++... .......++++.||||...+ +.|.|.++.+.+.+.....+... ..-++++....-.+ T Consensus 139 ~-~~y~~~~~---~~~~~~~~~~~dviH~r~~~~d~~~G~s~l~~~~~~i~~~~~~~~~-~~~~f~ng~~p~~i------ 207 (417) T protein:vir:38 139 N-IIYRFTPY---NSSMQKVCGFEDVIHWKFFSYDTIMGRSPLLSLGDEIGLQESGVST-LQKFFKSGLKGSII------ 207 (417) T ss_pred e-EEEEEEEc---CCcEEEEecCcceEEecCCCCCCccccCHHHHHHHHHHHHHHHHHH-HHHHHhccCCCcEE------ Confidence 2 24555432 12224456788899987533 45899998888776554444332 22334443221111 Q ss_pred hHHHHHhhhccChHHHHHHHHHHHHHHhccc---cceeecCCCceEEeecccCC--hHHHHHHHHHHHHhhhcCCceeee Q lcl|Aclame:pro 252 DFTNLASLYGVSIDELQDKFNEVAGEINRGN---DVLMTTQGATVTPLVTSVAD--PTATYNVNLQTAAAGVDIPTRILI 326 (449) Q Consensus 252 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~ed~~~~~~~lsg--l~d~~~~~~~~iaaas~IP~t~L~ 326 (449) ....+...++..+++.+.+....++. ..+++..+.+|+.++.+... +-+......+.||.+.|||..+| T Consensus 208 -----l~~~~~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~l- 281 (417) T protein:vir:38 208 -----KAKESRLSAEARQKIREDFERAQAGADAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRL- 281 (417) T ss_pred -----EEeCCCCCHHHHHHHHHHHHHHhcccccCCceeccCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHh- Confidence 01112223444555555554444332 24556677889998766443 33455556788999999998776 Q ss_pred ccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC--CCCceEEeCCCCCCCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 327 GNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA--VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQ 403 (449) Q Consensus 327 Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~--~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~ 403 (449) |.... .++.+ -...||. ..+.|+.+.+..-+-..+..+ ..++.|+|+. ..+... .....+ T Consensus 282 g~~~~-~s~~e~~~~~~~~-------~tl~P~~~~ie~~l~~~Ll~~~~~~~~~~~fd~-~~l~~~--------~~~~~~ 344 (417) T protein:vir:38 282 AQNSP-NQSVKQLADDYIR-------NDLPFYFEPITSEFELKLLDDAQRHQYCIGFDT-KSVNGL--------PIADVN 344 (417) T ss_pred CCCCc-chhHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhcChhhcccceEEech-hhhhHH--------HHHHHH Confidence 53221 22222 3344552 245666665554443333332 2356777752 112211 123355 Q ss_pred HHHHcCCccccCHHHHHHHhcCCCCCCCCCC---------CCCcchhh--------cccccCC Q lcl|Aclame:pro 404 TMLGSGDNPAFSREEIRTAAGYDNDDEEPLG---------EEDGDEED--------KATDSAA 449 (449) Q Consensus 404 ~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~---------~~~~~ee~--------~~~~~~a 449 (449) +.+++| ++|++|+|+..+++|..+...+ ..+..++. +..++.+ T Consensus 345 ~~~~~G---~~T~NE~R~~~gl~pi~~g~~d~~~~~~n~~~~d~~~~~~~~~~~~~kgg~~~~ 404 (417) T protein:vir:38 345 TAVNGG---LWTGNEGRAELGKKPLKDPNMDRIQSTLNTVFLDQKEAYQAEHAAELKGGDTNA 404 (417) T ss_pred HHHhCC---CcCHHHHHHHhCCCCCCCCCCCeeeecccccccccccccccccccccCCCCCCC Confidence 677787 9999999999999986332110 01111111 1111111 No 69 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=99.45 E-value=5.5e-13 Score=87.81 Aligned_cols=381 Identities=13% Similarity=0.086 Sum_probs=183.7 Q ss_pred CchhhHH---HHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCC-----cccCCHHHHHHHHHcCchhHHHHhhhH Q lcl|Aclame:pro 1 MTDKLTL---AVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGF-----PELVTYENLYSLYRRGGIAHGAVEKLV 72 (449) Q Consensus 1 ~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~-----~~~~~~~~l~~~Y~~~~l~r~iVd~pa 72 (449) |...-+- .+..+... .+..+. .+..+..+..++- ...++.+ -+.+++.+.++|++.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~--------~~g~~~---s~~~~~~~~~~~~~~~~~g~~v~~~----~al~~~~v~~ci~~Ia 65 (437) T protein:vir:10 1 MKQGKQRALGRIKSSFLK--------WLGVPI---SLTDGSFWSAWGGMGSSSGETVTAD----SALQLSAVWSCVRLIA 65 (437) T ss_pred CCcchhhhhhhhHHhhhh--------hcCCcc---cCCchhHHHhhcccccCCCceechH----hhhccHHHHHHHHHHH Confidence 6522221 11111110 000011 1111112222211 1233333 2346778899999999 Q ss_pred HHHhcCCcEEecCCChhhHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCce Q lcl|Aclame:pro 73 GKCWQTNPEIIEGDDADDSE--DETSWEKKSK-QVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGL 148 (449) Q Consensus 73 ~d~~r~~~~i~~~~~~~~~~--~~~~~e~~~~-~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l 148 (449) ++.-+-.+.+...++..... ....+...++ +-....-+..+.+.+.+. .++|.|++++.-++| . + T Consensus 66 ~~ia~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~g-~----------~ 134 (437) T protein:vir:10 66 ETIATLPLNLYQTKPDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRSAG-V----------L 134 (437) T ss_pred HHHhhCceeEEEEcCCCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEecCC-c----------E Confidence 99988887765432211110 0111111111 000000112233333333 467877776644322 1 2 Q ss_pred eeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC---CCCcchhHHHHHHHHHHHH Q lcl|Aclame:pro 149 QKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY---SEDAIGFLEPAYNAFVSLE 225 (449) Q Consensus 149 ~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~---~~~G~s~l~~~~~~l~~~~ 225 (449) ..|.|+....+++... .+ |.+ .|.+... .+....+.++.|+||... ...|.|.++.+...+.... T Consensus 135 ~~L~~l~p~~v~i~~~-~~------g~~-~y~~~~~----~g~~~~~~~~dIih~r~~~~d~~~G~spi~~~~~~i~~~~ 202 (437) T protein:vir:10 135 IGLELMLPQRTTVKRL-TS------GAL-QYTYRNV----DGTVSTLAEDDVFHVRGFSLDGLMGLTPIQYAREVLGNST 202 (437) T ss_pred EEEEEEcCcceEEEEC-CC------CeE-EEEEEec----CceEEEEccccEEEecCcCCCCcccccHHHHHHHHHHHHH Confidence 2344444333333211 11 222 3444311 223457888889888543 3568999998887765544 Q ss_pred HHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccC Q lcl|Aclame:pro 226 KVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVA 301 (449) Q Consensus 226 ~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~ls 301 (449) .+.... ..++++..+. ..+....+...++..+++.+.+....++. ..++++.+-+|+.++.+.. T Consensus 203 ~~~~~~-~~~f~ng~~p-----------~gil~~~~~l~~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~ 270 (437) T protein:vir:10 203 AANKTS-ASVFRNGLRP-----------SGVLSTDQILQKEKRAEIRTDLAEQFGGAMQAGKTMVLEAGMKYQAITMNPG 270 (437) T ss_pred HHHHHH-HHHHhccCCc-----------cEEEEcCCCCCHHHHHHHHHHHHHHhcCccccCcceeccCCceEEeccCChh Confidence 443332 2333332221 11111112223444455555444333322 2456667778999877643 Q ss_pred --ChHHHHHHHHHHHHhhhcCCceeeeccCccc-c--ccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-- Q lcl|Aclame:pro 302 --DPTATYNVNLQTAAAGVDIPTRILIGNQQAE-R--SSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV-- 373 (449) Q Consensus 302 --gl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg-~--~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~-- 373 (449) .+-+........||.+.+||-.+| |-..++ . +..+ -.+.||.. .+.|+++.+..-+-..+..+. T Consensus 271 d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~t~~~sn~e~~~~~f~~~-------tl~P~~~~ie~~l~~kll~~~e~ 342 (437) T protein:vir:10 271 DVQLLETRAFNIEEICRWYRVPPFMV-GHSEKSTSWGTGIEQQTLGFLTF-------TLRPWLTRIEQAARRSLLRPGER 342 (437) T ss_pred hHHHHHHHHHHHHHHHHHhCCCHHHh-CCCCCcccccchHHHHHHHHHHH-------HHHHHHHHHHHHHHhhccCcccc Confidence 456666778889999999997665 644332 2 1123 34556532 456776666655544443221 Q ss_pred CC--ceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC---------CCCCCcchhh Q lcl|Aclame:pro 374 AK--KAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP---------LGEEDGDEED 442 (449) Q Consensus 374 ~~--~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~---------~~~~~~~ee~ 442 (449) .. +.|.+..|...|.+++++ ++.+++++| ++|++|+|+..+++|..... .+.+..+++. T Consensus 343 ~~~~~~fd~~~ll~~d~~~r~~-------~~~~~~~~G---~~T~NE~R~~~gl~pi~gg~~~~~~~~~~~~~~~~~~~~ 412 (437) T protein:vir:10 343 DQFYAEFSVEGLLRADSAGRAA-------FYSTMTQNG---LMTRDECRAKENLPPMGGNAAVLTVQSALLPIDKLGEHT 412 (437) T ss_pred CceEEEEechhhhccCHHHHHH-------HHHHHHhCC---CcCHHHHHHHhCCCCCCCCcceEeecCcccchhhccCcC Confidence 22 556666888888777765 466677887 99999999999998853211 0000001100 Q ss_pred -cc-------------cccCC Q lcl|Aclame:pro 443 -KA-------------TDSAA 449 (449) Q Consensus 443 -~~-------------~~~~a 449 (449) .. .++.| T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ 433 (437) T protein:vir:10 413 TATAAQDALKAWLYQEEKTRA 433 (437) T ss_pred CCcchhccccccCCCCCCCCc Confidence 00 00001 No 70 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=99.45 E-value=1.5e-13 Score=90.83 Aligned_cols=383 Identities=11% Similarity=-0.000 Sum_probs=184.2 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) |+-.-...-+ -.+.. +.........+.+. +.... ...++.+ .+.+++-+.++|++.+++.-+-.+ T Consensus 1 m~~~~~~~~~--~~~~s---~~~~w~~~~~~~~~-~~~~~-----g~~vt~~----~al~~~~v~~~i~~Ia~~iA~lp~ 65 (421) T protein:vir:10 1 MFIPQMFEGK--KRSVS---GGGFWEAMLGGVRS-SHSKA-----GVMITPE----TALALSAVRACVTLLAESVAQLPV 65 (421) T ss_pred CCCcchhccc--ccccC---cchhhHHHhhhhcc-CcccC-----CceechH----HhhccHHHHHHHHHHHHhhccCce Confidence 5422111011 00001 11111111111111 11111 1233433 234677889999999999988888 Q ss_pred EEecCCChhhHHH--HHHHHHHHH-HHHHHHHHHHHHHHHH-hccccccEEEEEEecCCCcccccccccCceeeEEEecc Q lcl|Aclame:pro 81 EIIEGDDADDSED--ETSWEKKSK-QVFTNRLWRSFAEADR-RRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWA 156 (449) Q Consensus 81 ~i~~~~~~~~~~~--~~~~e~~~~-~l~~~~~~~~~~ea~~-~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~ 156 (449) .+...++...... ...+...++ +-....-+..|.+.+. +-.++|-|++++.- ++.. .+..|.|+.. T Consensus 66 ~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r-~~~G---------~~~~L~~l~~ 135 (421) T protein:vir:10 66 ELYRRDKNGGRQRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDR-DGKG---------YPKELIPINP 135 (421) T ss_pred EEEEEcCCCceeecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEE-cCCC---------cEEEEEEecC Confidence 8754332211110 111111111 0000001112223322 23467777666643 3221 1334555544 Q ss_pred ccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 157 GSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEKVEGGSGE 233 (449) Q Consensus 157 ~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~~~~~~~a~ 233 (449) ..+++.. | ..|.+ +|++.. .+..+.++-++|+...+ ..|.|.++.+.+.+.....+....+ T Consensus 136 ~~v~v~~---~----~~g~~-~y~~~~-------~g~~~~~~eiih~~~~~~d~~~G~spi~~~~~~i~~~~~~~~~~~- 199 (421) T protein:vir:10 136 KKVIVLK---G----PDGMP-YYEIPE-------IGETLPMRMMHHVKVFSLDGYIGSSPIQTNADVLGLNLAVEEHAS- 199 (421) T ss_pred ceEEEEE---C----CCceE-EEEEcC-------CCcEEchhhEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHH- Confidence 4444321 1 12443 455531 13457777777775433 4588999988876655444433333 Q ss_pred HHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcc----ccceeecCCCceEEeecccC--ChHHH Q lcl|Aclame:pro 234 SFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRG----NDVLMTTQGATVTPLVTSVA--DPTAT 306 (449) Q Consensus 234 l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~ed~~~~~~~ls--gl~d~ 306 (449) .++++..+. ..+++.+ .+.+...++..+++.+......++ -..++++.+-+|+.++.+.. .+-+. T Consensus 200 ~~f~ng~~~~gil~~~~--------~~~~~~~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~ 271 (421) T protein:vir:10 200 AVFRRGATMSGVIERPK--------EAPAIKSQEKIDQLLAKWTDRYSGINNMFSVALLQEGMSYKQMSQDNEKAQLLQS 271 (421) T ss_pred HHHhcCCCccEEEEecC--------ccCccCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEecCCChhHHHHHHH Confidence 233332221 1111110 011122345555555444443332 23466677788999887654 34566 Q ss_pred HHHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC--CC--ceEEeC Q lcl|Aclame:pro 307 YNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV--AK--KAVIWD 381 (449) Q Consensus 307 ~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~--~~--~~~~f~ 381 (449) .....+.||.+.|||-.+|-....+..++.| -.+.||.. .+.|+...++.-+-..+..+. .+ +.|... T Consensus 272 ~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~-------tl~P~~~~ie~~ln~kL~~~~~~~~~~v~fd~~ 344 (421) T protein:vir:10 272 RQWGVEEVCRLYKIPPHMVQMLAKATNNNIEHQGLQFVMY-------TLLAWLKRHEGALQRDLLLPSERRDLYIEFNVS 344 (421) T ss_pred HHHhHHHHHHHhCCCHHHcCCCcCCccccHHHHHHHHHHH-------HHHHHHHHHHHHHhhhccCccccCCeEEEEech Confidence 6778899999999997666333333333334 34455543 456766666655544443322 23 566667 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC--CC--------CCCCCcchhhcccccCC Q lcl|Aclame:pro 382 DLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE--EP--------LGEEDGDEEDKATDSAA 449 (449) Q Consensus 382 pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~--~~--------~~~~~~~ee~~~~~~~a 449 (449) .|...|.+++++ ++.+++++| ++|++|+|+..+++|... .. .......+....++.-| T Consensus 345 ~l~~~d~~~~~~-------~~~~~~~~G---~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~ 412 (421) T protein:vir:10 345 GLLRGDQKSRYE-------SYALGRQWG---WLSVNDIRRMENLPPIAGGDKYLTPLNMVDSAQIIPGDKKPTAQQMA 412 (421) T ss_pred hhhccCHHHHHH-------HHHHHHhCC---CcCHHHHHHHhCCCCCCCcceeeeccccccccccccCCCCcccccCc Confidence 888888887765 566677887 999999999999987532 10 00000001111111111 No 71 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=99.44 E-value=4.1e-13 Score=88.48 Aligned_cols=357 Identities=10% Similarity=0.048 Sum_probs=172.5 Q ss_pred HHHHHHHh-hcCcc----ccc--chhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChh---hHH Q lcl|Aclame:pro 23 MGLMVPTM-GLDNK----RHS--AWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDAD---DSE 92 (449) Q Consensus 23 ~~~~~~~~-g~~t~----r~~--~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~---~~~ 92 (449) |+|.+-.. .++.+ ++. .+.. +....+. -...|..++.+.++|..+|+.+-.-.+++....... +.. T Consensus 1 mg~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-t~~~~~~~~~v~~cv~~Ia~~ia~~p~~v~~~~~~~~~~~~~ 76 (403) T protein:vir:10 1 MGFKSWITEKLNPGQRIIRDMEPVSHR---TNRKPFT-TGQAYSKIEILNRTANMVIDSAAECSYTVGDKYNIVTYANGV 76 (403) T ss_pred Ccchhhhhhccchhhhhhhcccccccc---cCCcccc-cHHHHHHHHHHHHHHHHHHHHHhhCceeEeeccccccccccc Confidence 44444221 11211 111 1111 1111111 224566789999999999999999888875432111 111 Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhcc-ccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccc Q lcl|Aclame:pro 93 DETSWEKKSKQ-VFTNRLWRSFAEADRRRL-VGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINS 170 (449) Q Consensus 93 ~~~~~e~~~~~-l~~~~~~~~~~ea~~~~r-l~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s 170 (449) ....+...++. =....-...|.+.+.+.. |+|-|++++ ++..+ .|+.+. ...+.+ |. T Consensus 77 ~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~---~~~~l-~~l~~~----------~~~v~~-----~~-- 135 (403) T protein:vir:10 77 KTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYW---DGTSL-YHVPAA----------LMQVEA-----DA-- 135 (403) T ss_pred ccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEE---eCcee-EeecCc----------ceEEEE-----cC-- Confidence 11112222211 000011223444444444 456666554 23321 122211 111110 10 Q ss_pred cccCCceeEEeeecccCCCccceEEccceeeeccC--------CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh Q lcl|Aclame:pro 171 KTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD--------YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQ 242 (449) Q Consensus 171 ~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~--------~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~ 242 (449) +...++.+. ..+..+.+++++||.. ....|.|.++.+...+.....+..... -++++.... T Consensus 136 ---~~~~~~~~~-------~~~~~~~~~eiih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~-~~f~ng~~~ 204 (403) T protein:vir:10 136 ---NKFIKKFIF-------NNQINYRVDEIIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKE-KFLDNGTVI 204 (403) T ss_pred ---CceEEEEEe-------cCceeecccceEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCc Confidence 111112221 1123455566777653 234688999988887766555443333 233433221 Q ss_pred hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc----ceeecCCCceEEeecccC----ChHHHHHHHHHHH Q lcl|Aclame:pro 243 LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND----VLMTTQGATVTPLVTSVA----DPTATYNVNLQTA 314 (449) Q Consensus 243 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~ed~~~~~~~ls----gl~d~~~~~~~~i 314 (449) - .+....+...++..+++.+.+....++.. .+++..+-+|+.++.+.+ .+-+........| T Consensus 205 ~-----------gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~~~~~~~d~q~~e~~~~~~~~I 273 (403) T protein:vir:10 205 G-----------LILETDEILNKKLRERKQEELQLDYNPSTGQSSVLILDGGMKAKPYSQISSFKDLDFKEDIEGFNKSI 273 (403) T ss_pred c-----------eEEEeCCCCCHHHHHHHHHHHHHHhCCcccCcceeecCCCceeEEecccCCHHHHHHHHHHHHHHHHH Confidence 1 11111122345555566555554444322 345666668888775433 3456667788899 Q ss_pred HhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCC--CCCCHHHH Q lcl|Aclame:pro 315 AAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDL--NEQTGTEK 391 (449) Q Consensus 315 aaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL--~~~sekE~ 391 (449) |.+.|||-..| |... .++-+ ....||. ..+.|+.+.+..-+-..++ ..+.|+++.+ ...+.+ T Consensus 274 a~~fgVPp~~l-g~~~--~sn~e~~~~~f~~-------~tl~P~~~~ie~~l~~~L~---~~~~~d~~~~~~l~~D~~-- 338 (403) T protein:vir:10 274 CLAFGVPQVLL-DGGN--NANIRPNIELFYY-------MTIIPMLNKLTSSLTFFFG---YKITPNTKEVAALTPDKE-- 338 (403) T ss_pred HHHhCCCHHHc-CCCC--CcCHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcC---ceeeeccchhhhcccCHH-- Confidence 99999998654 5322 22222 3455553 2356666666554444443 2466677655 444544 Q ss_pred HHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCCCCC------------cchhhcccccCC Q lcl|Aclame:pro 392 LTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGEED------------GDEEDKATDSAA 449 (449) Q Consensus 392 Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~~~~------------~~ee~~~~~~~a 449 (449) ++++++.++++.| ++|++|+|+..+++|.+++..+..- ...|..+.+++. T Consensus 339 -----~~~~~~~~~~~~G---~lT~NE~R~~~gl~pi~~~~~d~~~~p~n~~~~~~~~~~~e~~~~~~~~ 400 (403) T protein:vir:10 339 -----AEAKHLTSLVNNG---IITGNEARSELNLEPLDDEQMNKIRIPANVAGSATGVSGQEGGRPKGST 400 (403) T ss_pred -----HHHHHHHHHHhCC---CcCHHHHHHHhCCCCCCcccccccccccccccccccCCCCcCCCCCCCc Confidence 4467778888888 9999999999999986543211100 001111111111 No 72 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=99.43 E-value=2e-13 Score=90.25 Aligned_cols=383 Identities=12% Similarity=0.054 Sum_probs=181.6 Q ss_pred HHHHHHHhhcCcccccchhcc------CC-cccCCH-HHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChh--hHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHSAWCEY------GF-PELVTY-ENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDAD--DSE 92 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~~~~~~------~~-~~~~~~-~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~--~~~ 92 (449) |+|.... |.-...+.....+ +- ....+. -.+.+.|..++-++.+|++.++++-+-.+.+....... +.- T Consensus 1 Mg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~dg~~~~~ 79 (423) T protein:vir:81 1 MGFLQKL-GLAPSVVATPEPIELVGPIFESLKLSTKNMTVEQIWEDQPHLRTVTTFIARNVASLQLQAFERVEDGGRERV 79 (423) T ss_pred CchhHhh-ccccccccCccccccccccccccccccchhhHHHHHHhhhHHHHHHHHHHHhHhhCceEEEEEecCCceeee Confidence 4444332 1100000011110 00 111111 24677788889999999999999999888774322111 110 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhcccccc Q lcl|Aclame:pro 93 DETSWEKKSKQVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSK 171 (449) Q Consensus 93 ~~~~~e~~~~~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~ 171 (449) ....+-..+++=....-+..+.+++.+. .++|-|++++.-+.+.. ..+..+.|+....+.+... .| T Consensus 80 ~~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~--------~~~~~l~p~~~~~v~~~~~-~~---- 146 (423) T protein:vir:81 80 REGHLARVCKLANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVD--------TPTLDIRPIPVSWVQRRAY-KD---- 146 (423) T ss_pred ccchHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcC--------cceEEEeecccceeeeeec-cC---- Confidence 1111111111100000112233333322 46677776664322222 1233344443333322221 11 Q ss_pred ccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh-hhhh Q lcl|Aclame:pro 172 TYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQ-LNVN 246 (449) Q Consensus 172 ~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~-l~~~ 246 (449) ..|.+ .|++... ....+..+.++++.|||+... ...|.|.++.+.+.+.....+...... ++++.... ..++ T Consensus 147 ~~~~~-~Y~~~~~-~~~~g~~~~~~~~evih~r~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~-~f~ng~~p~gvi~ 223 (423) T protein:vir:81 147 GWGSL-DYIIIES-GDNDGRSVKVPGERVIHRHGYNPKTMKRGKSPVQSLRDILGEQIEAAIFRAQ-MWRNGPRPGMVIM 223 (423) T ss_pred CCcce-EEEEEEe-cCCCceEEEEcccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHH-HHhccCCCceEEE Confidence 12332 3444311 112234567899999998643 235999999988877555554433333 33443221 1111 Q ss_pred hhhhhhHHHHHhhhccChHHHHHHHHHHHHHH-hcc---cc-ceeecCCCceEEeecccCC--hHHHHHHHHHHHHhhhc Q lcl|Aclame:pro 247 FEKEIDFTNLASLYGVSIDELQDKFNEVAGEI-NRG---ND-VLMTTQGATVTPLVTSVAD--PTATYNVNLQTAAAGVD 319 (449) Q Consensus 247 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~---~~-~~l~~~~ed~~~~~~~lsg--l~d~~~~~~~~iaaas~ 319 (449) +.. . ...+...++..+++.+.+... ..+ .+ .+++..+-+|+.++.+... +-+........||.+.+ T Consensus 224 ~~~------~-~~~~~l~~e~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fg 296 (423) T protein:vir:81 224 RDP------E-SKAGKWDAESRTRFMANLRASFSPKSSDVGGTLLLEDGMKAENFHTTSKDEQTVETTKLSLQTVAQVYG 296 (423) T ss_pred ecC------c-ccCccCCHHHHHHHHHHHHHHhccccccCCcceecCCCceEEeccCChhhHHHHHHHHhhHHHHHHHhC Confidence 100 0 001122345555554444332 222 22 3456667789888776443 33455667788999999 Q ss_pred CCceeeeccCccc-cccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC----CCC--ceEEeCCCCCCCHHHH Q lcl|Aclame:pro 320 IPTRILIGNQQAE-RSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA----VAK--KAVIWDDLNEQTGTEK 391 (449) Q Consensus 320 IP~t~L~Gqs~gg-~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~----~~~--~~~~f~pL~~~sekE~ 391 (449) ||-. ++|...++ .++.| -.+.||.. .+.|+.+.++.-+-..+... ..+ |.|.+..|...|-+++ T Consensus 297 VPp~-~lg~~~~~t~sn~e~~~~~f~~~-------~L~P~~~~ie~~l~~~L~~~~~~~~~~~~~~fd~~~llr~d~~~r 368 (423) T protein:vir:81 297 INPT-MVGQLDNANYSNVREFRKALYGD-------NLGSWIRIIQDVMNLFLLPRVGIDNEKFYFEFNLEEKLRASFEEA 368 (423) T ss_pred CCHH-HhcCCCCCCcccHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhcCccccccCccEEEecchhhhccCHHHH Confidence 9965 45753332 22334 24456554 34565555544333333221 234 4444567777777776 Q ss_pred HHHHHHHHHHHHHHH-HcCCccccCHHHHHHHhcCCCCCC--CC---C--C-CCCcchhhccccc Q lcl|Aclame:pro 392 LTNAKTMGEINQTML-GSGDNPAFSREEIRTAAGYDNDDE--EP---L--G-EEDGDEEDKATDS 447 (449) Q Consensus 392 Aei~~~~A~a~~~~~-~~g~~~~~~~~e~r~~~~~~~~~~--~~---~--~-~~~~~ee~~~~~~ 447 (449) ++. ..+++ ++| ++|++|+|+..+++|... .. . . ....+......|| T Consensus 369 ~~~-------~~~~l~~~G---~~T~NE~R~~~gl~p~~gGD~~~~p~n~~~~~~~~~~~~~~~t 423 (423) T protein:vir:81 369 AEI-------KRAAVGNVA---WMTINEVRAMDNLPSIDGGDDLARPLNTEFGDSEDAPGEEVET 423 (423) T ss_pred HHH-------HHHHHhCCC---CcCHHHHHHHhCCCCCCCcceeecccccccCccCCCCCCCCCC Confidence 654 33444 345 889999999999988532 11 0 0 0011111223333 No 73 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=99.43 E-value=3.2e-13 Score=89.06 Aligned_cols=319 Identities=11% Similarity=0.100 Sum_probs=158.6 Q ss_pred chhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 39 AWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADR 118 (449) Q Consensus 39 ~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~ 118 (449) .+ .+. + .+|+.+ +.++.|..+.+...+.-+ .-...+|+.+... T Consensus 1 ia-------~lp---~-~~~~~~----~~~~~~l~~lL~~~PN~~--------------------~t~~~f~~~~~~~-- 43 (348) T protein:vir:93 1 MA-------SLP---L-KMYEDY----KVVNTEVSDLLTVSPNNS--------------------LSSFDFINQIETI-- 43 (348) T ss_pred Cc-------ccc---e-EeEecC----cCcccHHHHHHHhCCCCC--------------------CCHHHHHHHHHHH-- Confidence 00 000 0 012211 122333333322111000 0000233333222 Q ss_pred hccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccc Q lcl|Aclame:pro 119 RRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPD 198 (449) Q Consensus 119 ~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~S 198 (449) -.++|.|++++.-+ ... .+..|.|+....+++.. + .-+.+.+|.+... .+..+.++++ T Consensus 44 -l~l~Gna~~~i~r~-~~G---------~~~~L~~l~~~~v~~~~---~----~~~~~~~y~~~~~----~g~~~~~~~~ 101 (348) T protein:vir:93 44 -RNEKGNAYVLIERD-IYH---------QPSKLFLLNPDVVEMLI---E----NQSRELYYSIHAA----TGNKLIVHNM 101 (348) T ss_pred -HhhcCCeEEEEEEC-CCC---------cEEEEEEEcCCceEEEE---e----CCCcEEEEEEEcC----CCeEEEEccc Confidence 24578777776542 111 13345555444333221 1 1134566776522 3345678999 Q ss_pred eeeeccC----CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHH Q lcl|Aclame:pro 199 RVFILGD----YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEV 274 (449) Q Consensus 199 Rli~~~~----~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 274 (449) .|+||.. +...|.|.++.+...+.....+... + +.+....- .-+....+...++..+++.+. T Consensus 102 eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~-~---~~~~~~~~----------~~i~~~~~~l~~e~~~~~~~~ 167 (348) T protein:vir:93 102 DMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTF-N---LTEMQKPD----------SFMLKYGSNVSTEKRQQVLED 167 (348) T ss_pred cEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHH-H---HHhcCCCc----------eeEEecCCCCCHHHHHHHHHH Confidence 9999964 2345889888877655432222111 0 11100000 001111122334555555555 Q ss_pred HHHHhcccc-ceeecCCCceEEeecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHH Q lcl|Aclame:pro 275 AGEINRGND-VLMTTQGATVTPLVTSVA--DPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRR 350 (449) Q Consensus 275 ~~~~~~~~~-~~l~~~~ed~~~~~~~ls--gl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Q 350 (449) +....++.+ .++++.+.+|+.++.+.. .+.+........||++.|||-.+|-+...+..++.+ -.++||..+ T Consensus 168 ~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~e~~~~~~~~~~---- 243 (348) T protein:vir:93 168 FKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHT---- 243 (348) T ss_pred HHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHH---- Confidence 544434433 455566778999887655 455667778899999999998777544434334434 355666543 Q ss_pred HhhhHHHHHHHHHHHHHhcCCCC---CC--ceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcC Q lcl|Aclame:pro 351 VDLSFEIEDFCDKLIELKIIDAV---AK--KAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGY 425 (449) Q Consensus 351 e~~~~p~~~~l~~l~~~~~~~~~---~~--~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~ 425 (449) +.|+.+.+..-+-..+.... .+ |.|.+..|...|.+++|+ ++.+++++| ++|++|+|+..++ T Consensus 244 ---l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~a~-------~~~~~~~~G---~~T~NE~R~~~g~ 310 (348) T protein:vir:93 244 ---LLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAE-------VYFKAVRSG---YYTINDIREWEDL 310 (348) T ss_pred ---HHHHHHHHHHHHHHhhCCcccccCcceEEeechhhhccCHHHHHH-------HHHHHHhCC---CCCHHHHHHHhCC Confidence 67777776655544443322 13 556677888888777655 556778887 9999999999999 Q ss_pred CCCCC--C--------CCCCC-Cc-----chhhccccc Q lcl|Aclame:pro 426 DNDDE--E--------PLGEE-DG-----DEEDKATDS 447 (449) Q Consensus 426 ~~~~~--~--------~~~~~-~~-----~ee~~~~~~ 447 (449) +|.+. . +.+.. +. ..++-..|+ T Consensus 311 ~p~~ggD~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 348 (348) T protein:vir:93 311 PPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 348 (348) T ss_pred CCCCCcCeEeecccccccccchhhcccccCCCCCcCCC Confidence 88632 1 00000 00 011111111 No 74 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=99.41 E-value=3.8e-13 Score=88.69 Aligned_cols=349 Identities=13% Similarity=0.103 Sum_probs=164.0 Q ss_pred HHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSK 102 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~ 102 (449) |+|..-..+........+... +-..++ ...|.++..+.++|++.+.++.+-.+++...++..+. .+...++ T Consensus 1 Mg~f~~~f~~~~~~~~~~~~~-~~~~~~----~~~a~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~----~l~~lL~ 71 (385) T protein:vir:95 1 MGLFDSVFKRHSELSWMYDLE-FLQDKS----KKAYLKQIALNTVVEMVARTISQSEFRVMKNNTKEKG----TLYYLLN 71 (385) T ss_pred CchhhhhhccCcccccccchh-hhhccc----hhhhhhhHHHHHHHHHHHHHHcccceeeeecCccccc----hHHHHHh Confidence 444433323222111111000 001111 2345567888999999999999999887654433221 1222221 Q ss_pred H-HHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccCCceeEE Q lcl|Aclame:pro 103 Q-VFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWK 180 (449) Q Consensus 103 ~-l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~ 180 (449) . =....-+..+.+.+.+. -++|.|++++ .+++.-+ .. ..+. .+... ... .+.+|. T Consensus 72 ~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~-~~~~~~~---~~-------~~~~-----~~~~~--~~~-----~~~~~~ 128 (385) T protein:vir:95 72 VRPNRNQNAVDFWQKFIFKLIMDNEVLVVK-NDEGHFF---VA-------DDFE-----KEDEL--GLY-----SHRFTN 128 (385) T ss_pred cccCcCCCHHHHHHHHHHHHhhcCceEEEE-ecCCCee---ec-------cccc-----ccccc--ccc-----ccccee Confidence 0 00000112222232223 3567776554 3333211 00 0000 00000 000 111222 Q ss_pred eeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHH Q lcl|Aclame:pro 181 YTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNL 256 (449) Q Consensus 181 i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l 256 (449) +... .......+-++.||||... ...|.|.++.+.+.+.....+ ..+.+..+.+ + .+. T Consensus 129 ~~~~---~~~~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~------~~~~~~~~g~-l------~~~-- 190 (385) T protein:vir:95 129 VLVN---DFEFKRVFTMDDVIYLKYNNQKLDAFSLGLFEDYGEIFGRMIDL------QMLNNQIRGI-L------KVD-- 190 (385) T ss_pred eeec---ccceeeeeccccEEEecCCCCCcccccchHHHHHHHHHHHHHHH------HHhcCCCceE-E------EeC-- Confidence 2110 0111233445667777532 345888887776654321111 1111111110 0 000 Q ss_pred HhhhccChHHHHHHHHHHHHHHh-----ccccceeecCCCceEEeecccC--------ChHHHHHHHHHHHHhhhcCCce Q lcl|Aclame:pro 257 ASLYGVSIDELQDKFNEVAGEIN-----RGNDVLMTTQGATVTPLVTSVA--------DPTATYNVNLQTAAAGVDIPTR 323 (449) Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~ed~~~~~~~ls--------gl~d~~~~~~~~iaaas~IP~t 323 (449) . .....++..+++.+.+.... ++...+.+..+-+|+.++.... .+-+.......+||.+.+||.. T Consensus 191 -~-~~~~~~e~~~~~~~~~~~~~~g~~~~~~~i~~l~~g~~~~~l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~ 268 (385) T protein:vir:95 191 -A-TKFYNKEKQKELQAYIDTLFDAFQNNTIAVVPLTEGLAYEEHSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPS 268 (385) T ss_pred -C-ccCCCHHHHHHHHHHHHHHhhhhhhcCCceEEcCCCceeEeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHH Confidence 0 11223444444444443332 2222344667788998876432 3455666677889999999998 Q ss_pred eeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC----CceEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 324 ILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVA----KKAVIWDDLNEQTGTEKLTNAKTM 398 (449) Q Consensus 324 ~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~----~~~~~f~pL~~~sekE~Aei~~~~ 398 (449) +|- |..++.+ -...||.. .+.|+.+.+..-+-..+..+.. .+.|.+.+|...|.++++ T Consensus 269 ~l~----~~~sn~e~~~~~~~~~-------~l~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~D~~~~~------ 331 (385) T protein:vir:95 269 LVL----GEMADLEKTIESYLQF-------CINPLLRKIEAELNSKFFYQDEYLNDDMHIKVVGIDKRDPLKLS------ 331 (385) T ss_pred Hhc----CCCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCChhhcccceEEEechhhhccCHHHHH------ Confidence 883 2223333 34455543 3567666666555444433221 356677788888877654 Q ss_pred HHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC------------CCCCCcchhhcc Q lcl|Aclame:pro 399 GEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP------------LGEEDGDEEDKA 444 (449) Q Consensus 399 A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~------------~~~~~~~ee~~~ 444 (449) +++.+++++| ++|++|+|+..+++|.+++. .+...+.|...+ T Consensus 332 -~~~~~~~~~g---~lt~NE~R~~~g~~p~~~~~gd~~~~~~n~~~~~~~kgge~~~e 385 (385) T protein:vir:95 332 -EAIDKLVASG---TFTRNQVRIMTGEEPADDPELDKFIITKNLQSADAFKGGESNEE 385 (385) T ss_pred -HHHHHHHhCC---CcCHHHHHHHhCCCCCCCCCCceeeecccceecccccCCCCCCC Confidence 5566688887 99999999999999864321 111111121111 No 75 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=99.41 E-value=1.9e-12 Score=84.83 Aligned_cols=391 Identities=11% Similarity=0.061 Sum_probs=182.3 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHh-hcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTM-GLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTN 79 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~ 79 (449) |.+.+.-+.+-+- . ..+.+..... ..|.. + .+++... ..-....|..++-+.++|++.+++.-.-. T Consensus 1 ~~~~~~~~~~~~~---~---~~~~~~~~~~~~~g~~----~--~~~~~~~-~~~~~~~a~~~~~v~~~v~~ia~~iA~lp 67 (460) T protein:vir:10 1 MANRIIRALRELT---G---LDNKFNDAFIKYIGQT----F--TKYDNNG-KTYLEQGYNINPDVYSCISQMAAKTVAVP 67 (460) T ss_pred CchhHHHHHhhhh---c---cCCCchHHHHHhhccc----c--CCCccch-hhhhHHHHhcchHHHHHHHHHHHhhhhCc Confidence 8888875554211 1 1111111111 11100 0 0011100 01134457788899999999999998888 Q ss_pred cEEecCCChhhHHHHH-------------------------HHHHHHHHHHHH----HHHHHHHHHHHh-ccccccEEEE Q lcl|Aclame:pro 80 PEIIEGDDADDSEDET-------------------------SWEKKSKQVFTN----RLWRSFAEADRR-RLVGRYAGIL 129 (449) Q Consensus 80 ~~i~~~~~~~~~~~~~-------------------------~~e~~~~~l~~~----~~~~~~~ea~~~-~rl~Gga~i~ 129 (449) +.+............. ..+.....|..+ .-...|.+.+.+ -.++|-|+++ T Consensus 68 ~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~ 147 (460) T protein:vir:10 68 YTIKVVKDTKAYQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYFY 147 (460) T ss_pred eEEEeccCCccchhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEE Confidence 8875433222111000 000001111110 001122233332 2456777766 Q ss_pred EEecCCCcccccccccCceeeEEEeccccCChhhh-hccccccccCCceeEEeeecccCCCccceEEccceeeeccC--- Q lcl|Aclame:pro 130 LHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEW-DTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD--- 205 (449) Q Consensus 130 i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~-~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~--- 205 (449) +.-.+.... ...+..|.|+....+++... +..+....|+ ...|.+. ..+....+.++.||||.. T Consensus 148 i~r~~~~~~------~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~-~~~~~~~-----~~g~~~~~~~~evih~r~~~~ 215 (460) T protein:vir:10 148 LMSPDDGIN------AGVPSQMYVLPAHLIKIVLKDDINLLSTDSP-IKSYMLI-----QGDQFIEFNEDEVIHTKYANP 215 (460) T ss_pred EEecCCCcc------CceeEEEEEEcCceEEEEEcCCCceeeeeee-eeEEEEe-----cCceeEEecccceEEEecCCC Confidence 654221110 01134455555544444221 1111111111 1233332 123457889999999842 Q ss_pred ------CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHh Q lcl|Aclame:pro 206 ------YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEIN 279 (449) Q Consensus 206 ------~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 279 (449) ....|.|.++.+.+.|.....+... +..++++....-.+ ....+...++..+++.+.+.... T Consensus 216 ~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~-~~~~f~ng~~~~~i-----------~~~~~~l~~e~~~~~~~~~~~~~ 283 (460) T protein:vir:10 216 NFDLQGSHLYGMSPIRAILRNINSQNSTIDN-NVKTMQNGGVFGFI-----------HGGSTGLTQPQADSLKQRLTEMD 283 (460) T ss_pred CcccccCccccccHHHHHHHHHHHHHHHHHH-HHHHHhcCCCccee-----------eecCCCCCHHHHHHHHHHHHHHh Confidence 2346899999888766554444332 33334443211101 11112234555566666555544 Q ss_pred ccc---c-ceeecCCCceEEeecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCc-ccc--ccch-hHHHHHHHHHHH Q lcl|Aclame:pro 280 RGN---D-VLMTTQGATVTPLVTSVA--DPTATYNVNLQTAAAGVDIPTRILIGNQQ-AER--SSTE-DQKYFNARCQSR 349 (449) Q Consensus 280 ~~~---~-~~l~~~~ed~~~~~~~ls--gl~d~~~~~~~~iaaas~IP~t~L~Gqs~-gg~--~s~e-D~~nyyd~I~~~ 349 (449) ++. + .++++.+-+|+.++.+.. .+-+......++||.+.|||-. ++|... +.. ++.| -.+.||.. T Consensus 284 ~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~-~lg~~~~~t~~~sn~e~~~~~f~~~---- 358 (460) T protein:vir:10 284 KSPDRLSQIAGASGEIAFTKISLNTDELKPFDYLKYDQKAICNALGWSDK-LLNNNEGGGLNTGNLEEERKRVVTD---- 358 (460) T ss_pred cCccccCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHH-HhCCCCCCCCccccHHHHHHHHHHH---- Confidence 432 2 355666678988877644 3456777888999999999987 455433 222 2234 34566653 Q ss_pred HHhhhHHHHHHHHHHHHHhcC---CCCCCceEEeC--CCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhc Q lcl|Aclame:pro 350 RVDLSFEIEDFCDKLIELKII---DAVAKKAVIWD--DLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAG 424 (449) Q Consensus 350 Qe~~~~p~~~~l~~l~~~~~~---~~~~~~~~~f~--pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~ 424 (449) .+.|+.+.+..-+-..+. ....++.|+|+ .|-.+. .+ .+ +...++++| ++|++|+|+..+ T Consensus 359 ---~l~P~~~~ie~~ln~kl~~~~~~~~~~~i~~d~~~l~~l~----~d-~~----~~~~~~~~g---~~T~NE~R~~~g 423 (460) T protein:vir:10 359 ---NIQPDLVILKQAFDKKFIKRFKGYENAVIEWDISELPEMQ----TD-MV----AMASWLNTI---PVTPNEIRIAMK 423 (460) T ss_pred ---HHHHHHHHHHHHHHHhhcCcccccCCceEEeecchhhhHH----HH-HH----HHHHHHhCC---CCCHHHHHHHhC Confidence 345555555443333332 12345556653 331111 11 12 222356777 899999999999 Q ss_pred CCCCCCCCCCC---------CCcchh----hcccccC Q lcl|Aclame:pro 425 YDNDDEEPLGE---------EDGDEE----DKATDSA 448 (449) Q Consensus 425 ~~~~~~~~~~~---------~~~~ee----~~~~~~~ 448 (449) ++|..++..+. .+.-.+ +..-.+. T Consensus 424 ~~pi~~~~gD~~~~~~n~~~~~~~~~~~~~~~~nq~~ 460 (460) T protein:vir:10 424 YETLNQDGMDIVFMPSNKVRIDDVSNNLIDSAFNQNQ 460 (460) T ss_pred CCCCCCCCCCeeeecccccchhhcccccCCCcccCCC Confidence 99864322111 000000 0000000 No 76 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=99.41 E-value=1.4e-12 Score=85.64 Aligned_cols=384 Identities=13% Similarity=0.056 Sum_probs=177.8 Q ss_pred CchhhHHHHHhhhHHH--HH-HHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDA--RM-ARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQ 77 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~--~~-~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r 77 (449) =+++=+|+|....... |. ......+......+++.... ....++.. . +.++.-+.++|+.+|+++-+ T Consensus 17 ~~~~~~~~~~~~f~~~e~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---~-al~~~~V~acv~~Ia~~iA~ 86 (441) T protein:vir:98 17 KQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGT------KLRQYKDI---E-AIRHSDIFTAVMMIASDLAR 86 (441) T ss_pred cchhhhhhccccccccccccccCCCcchHHHHHHhhccccc------Cccccchh---h-hhccHHHHHHHHHHHHhhcc Confidence 1222222222222100 00 00000011000000000000 00112211 1 22345567799999999988 Q ss_pred CCcEEecCCChhhHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEE Q lcl|Aclame:pro 78 TNPEIIEGDDADDSEDETSWEKKSK-QVFT----NRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVS 152 (449) Q Consensus 78 ~~~~i~~~~~~~~~~~~~~~e~~~~-~l~~----~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~ 152 (449) -.+++....+.... . .+-..++ +=.. ..+++.+... -.++|-|++++.- ++.. ....|. T Consensus 87 lpl~~~~~~~~~~~--~-~~~~lL~~~PN~~~t~~~f~~~l~~~---lll~Gnay~~i~r-~~~G---------~~~~L~ 150 (441) T protein:vir:98 87 MPIRVTVNGQINYS--D-RIVNLLNTRPNPMYNGYIFKLVVFVS---ALLTSHGYIEITR-DKTG---------EPMNLT 150 (441) T ss_pred CceEEecCCccccc--c-hHHHHHhcccccCCCHHHHHHHHHHH---HhhcCCeEEEEEE-cCCC---------cEEEEE Confidence 88887653322111 1 1111111 0000 0233333222 2467877776643 3211 133445 Q ss_pred EeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 153 VSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEKVEG 229 (449) Q Consensus 153 v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~~~~~ 229 (449) ++....+++.. | .-|++.+|.. .....+....+.+.++.||||...+ ..|.|.++.+.+.|.....+.. T Consensus 151 ~i~~~~v~v~~---~----~~g~~~~~~~-~~~~~~~~~~~~~~~~dviHir~~~~dg~~G~spi~~~~~~i~~~~a~~~ 222 (441) T protein:vir:98 151 FRKTSEIELKL---D----ARGRLYYFHQ-RIDSNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKD 222 (441) T ss_pred EEcCceeEEEE---C----CCCcEEEEEE-EeccCcceeeEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHH Confidence 55444444321 1 1244443332 2222223334567888899886433 4588999988876654444333 Q ss_pred HHHHHHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccC--C Q lcl|Aclame:pro 230 GSGESFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVA--D 302 (449) Q Consensus 230 ~~a~l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~ls--g 302 (449) ... -++++.... ..+++ .+.. ..++..+++.+......++. ..+++..+.+|+.++.+.. . T Consensus 223 ~~~-~~f~ng~~~~gil~~---------~~~~--~~~e~~~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q 290 (441) T protein:vir:98 223 FLN-NFLRNGTHAGGILKM---------KGVL--DNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLK 290 (441) T ss_pred HHH-HHHhccCCCcEEEEe---------CCCC--CCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHH Confidence 322 333432221 11111 1111 12344445544444443332 2466667778998876543 3 Q ss_pred hHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCC--ceEEe Q lcl|Aclame:pro 303 PTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAK--KAVIW 380 (449) Q Consensus 303 l~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~--~~~~f 380 (449) +-+......++||.+.|||-.+| |...++.+ .+....+| + ..+.|+.+.++.-+-..+.+...+ |.|.. T Consensus 291 ~~e~r~~~~~~Ia~~fgVPp~~l-g~~~~~~s-~~q~~~~y--~-----~tl~P~~~~ie~~ln~~L~~~~~~~~~~fd~ 361 (441) T protein:vir:98 291 LIRENKSSTREIAGVFGIPLHKF-GIETANMS-ITDANLDY--L-----STLKPYITCVCAELNFKFNDEYVNREFKFDT 361 (441) T ss_pred HHHHHHHhHHHHHHHhCCCHHHc-CCCCCCcc-HHHHHHHH--H-----HHHHHHHHHHHHHHHhhccccccCceEEEec Confidence 45666777889999999998776 64433322 22222222 1 134566666655444444433333 55555 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC----------CCCCCcchhhccc--ccC Q lcl|Aclame:pro 381 DDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP----------LGEEDGDEEDKAT--DSA 448 (449) Q Consensus 381 ~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~----------~~~~~~~ee~~~~--~~~ 448 (449) ..|...|.+++ ++++++++++| ++|++|+|+..+++|..... .+.+..++.+... ++. T Consensus 362 ~~llr~d~~~~-------~~~~~~~~~~G---~~T~NE~R~~~gl~pi~gGd~~~~~~~~n~~~~~~~~~~q~~~~~~~~ 431 (441) T protein:vir:98 362 TEIRVVDEKTQ-------AEIDKINIDSG---KMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATD 431 (441) T ss_pred hhhhccCHHHH-------HHHHHHHHhCC---CcCHHHHHHHhCCCCCCCCCcceEeecccccccccccccccccccccc Confidence 67777777765 55667788887 99999999999998853211 0111111111100 000 Q ss_pred C Q lcl|Aclame:pro 449 A 449 (449) Q Consensus 449 a 449 (449) . T Consensus 432 ~ 432 (441) T protein:vir:98 432 K 432 (441) T ss_pred c Confidence 0 No 77 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=99.41 E-value=6.4e-13 Score=87.45 Aligned_cols=411 Identities=12% Similarity=0.066 Sum_probs=184.2 Q ss_pred CchhhHHHHHhhhHHHHHHH-HHHHHHHHHh-hcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMAR-ARMGLMVPTM-GLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~-g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) |+++=. -|+..+=-+.... ..+-.....+ -+...+ -....-+.+...++.+|..+-..|.+.++||++.+++..-- T Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~L~~~~e~~~~~~~~i~~~~~~iag~ 78 (651) T protein:vir:99 1 MTDTTG-ETQETKVHVEGLGGEADLAKSPNSTQIPDHR-IQSHNVGVNPPYNPDRLAAFLELNETLATGIRKKSRYEVGF 78 (651) T ss_pred CCCccc-eeeeeEEEeecccccccccccccccccchhh-hcccCCCCCCCCCHHHHHHHHhcChHHHHHHHHHhhhhhcc Confidence 887652 1222110000000 0000000000 000000 01111234556789999999999999999999999999988 Q ss_pred CcEEecCCChh-hHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhccccccEEEEEEec-CCCcc Q lcl|Aclame:pro 79 NPEIIEGDDAD-DSEDETSWEKKSKQVFT------------------NRLWRSFAEADRRRLVGRYAGILLHIR-DEKDW 138 (449) Q Consensus 79 ~~~i~~~~~~~-~~~~~~~~e~~~~~l~~------------------~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~ 138 (449) ||.|.-..+.+ +......+++.++.+.. ..+.+.+.+.+ ...|.+++=+... .++.. T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dl---e~tGna~ieiIrn~~g~pv 155 (651) T protein:vir:99 79 GFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDY---HGVGWLALEMLTDIEGRPV 155 (651) T ss_pred CceeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHH---HHHhhHhhhhhhcCccchh Confidence 98875311110 11111222232221100 01111111111 2334444422211 01100 Q ss_pred ---cccccccC--------------------------------------ceeeEEEec----------cccCCh--hhhh Q lcl|Aclame:pro 139 ---NLPATKGR--------------------------------------GLQKVSVSW----------AGSLKV--AEWD 165 (449) Q Consensus 139 ---~~Pl~~~~--------------------------------------~l~~i~v~~----------~~~i~~--~~~~ 165 (449) ..|....+ +-.++.++. ...... ..+. T Consensus 156 ~L~~lp~~~~Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~ 235 (651) T protein:vir:99 156 GLAYVPARTVRVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDRYRGQEVVIDESGDEPTIRYR 235 (651) T ss_pred hhhhcChhheeeecccccccchhhhhhhcccccccchhHHHHHHHHHhcCcceEEEeeccccceeeeeccCCcceeEEec Confidence 01111000 000011100 000000 0000 Q ss_pred ccc---cccccCCceeEEeeecccCCCccceEEccceeeeccC----CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHH Q lcl|Aclame:pro 166 TGI---NSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD----YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKN 238 (449) Q Consensus 166 ~Dp---~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~----~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~ 238 (449) .|. ..+.+..+..|.+... .......+.++.||||.. ....|.|.++.+...+.....+..... .++++ T Consensus 236 ~d~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~eViHir~~~~~~g~~G~spl~~a~~~i~~a~~a~~~~~-~~f~N 311 (651) T protein:vir:99 236 EDEESEREPIFVDRETGDVTTG---DANGLENRPANELIFIPNPSILEDDYGVPDWVSAIRTISADEAAKDYNR-DFFDN 311 (651) T ss_pred cCcceeeeeecccceeeeEEEc---CCCceeEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHH-HHHhc Confidence 111 1123334444444321 122245678889999864 334699999998887755444433322 33343 Q ss_pred Hhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecC------------CCceEEeecccC---C Q lcl|Aclame:pro 239 AARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQ------------GATVTPLVTSVA---D 302 (449) Q Consensus 239 ~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~ed~~~~~~~ls---g 302 (449) .... ..+++ . .+...++..+++.+.+.....+.+..++.. +-+|+.++...+ . T Consensus 312 G~~p~gil~~------~-----~~~ls~e~~~~lr~~~~~~~~nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~q 380 (651) T protein:vir:99 312 DTIPRMVIKV------T-----GGELSEESKRDLRQMLNGLREESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMD 380 (651) T ss_pred cCCCceEEEe------c-----CCCCCHHHHHHHHHHHHHHhccCCceEEeecccccccccccCCceEEEcCcCchhhHH Confidence 2211 11111 0 112345555666655555444444433322 235666554332 3 Q ss_pred hHHHHHHHHHHHHhhhcCCceeeeccCccc-cccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC---CC--C Q lcl|Aclame:pro 303 PTATYNVNLQTAAAGVDIPTRILIGNQQAE-RSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA---VA--K 375 (449) Q Consensus 303 l~d~~~~~~~~iaaas~IP~t~L~Gqs~gg-~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~---~~--~ 375 (449) +-+........||++.+||-..| |...++ .++.+ -.+.|+.. .+.|++..+..-+-..+... .. . T Consensus 381 fle~r~~~~~eIa~afgVPp~~l-G~~~~~~~sn~E~~~~~f~~~-------tL~P~~~~ie~eln~kLl~~~e~~~~~~ 452 (651) T protein:vir:99 381 FRQFREKNEHEIAKVLEVPPVKI-GVTDSANRSNSDQQDKDFALE-------VIQPEQHTFAEWLYQIIHQQALGVTDWT 452 (651) T ss_pred HHHHHHHHHHHHHHHhCCCHHHh-ccCCCCCcccHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCccccccCce Confidence 45556777889999999997555 654433 33334 45566543 35566666655444333321 12 3 Q ss_pred ceEEeCC--CCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCC----C-------------- Q lcl|Aclame:pro 376 KAVIWDD--LNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLG----E-------------- 435 (449) Q Consensus 376 ~~~~f~p--L~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~----~-------------- 435 (449) +.|+|+. |...+.+ ++++++..++++| ++|++|+|+..+++|.+++..+ + T Consensus 453 i~~ef~~~~llr~D~~-------~~~e~~~~~i~~G---~~T~NE~R~~lglppi~~~~gd~~l~~~~~~~~g~~~~gge 522 (651) T protein:vir:99 453 IEYELRGADQPKQEAQ-------LAEQRVRAMRLAG---VGLVDEAREELGLDPLGEPYGEMTLSEFEAEVAGDVAGGGE 522 (651) T ss_pred EEEEeccchhhhccHH-------HHHHHHHHHHhCC---CcCHHHHHHHhCCCCCCCccccccccccccccccccccCCC Confidence 4556654 5555554 4456677788888 9999999999999886432100 0 Q ss_pred ----CCcchhhcccccCC Q lcl|Aclame:pro 436 ----EDGDEEDKATDSAA 449 (449) Q Consensus 436 ----~~~~ee~~~~~~~a 449 (449) .+..++....+..+ T Consensus 523 ~~~~~~~~~~~~~~~~e~ 540 (651) T protein:vir:99 523 TEAVHEPPEENKIGEREW 540 (651) T ss_pred CcccccCccccccccchh Confidence 00001111111111 No 78 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=99.40 E-value=4.8e-13 Score=88.14 Aligned_cols=366 Identities=10% Similarity=0.002 Sum_probs=172.0 Q ss_pred HHHHHHHhhcCcccccchhccCCc-ccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHSAWCEYGFP-ELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKS 101 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~~~~~~~~~-~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~ 101 (449) |+|.+...-.....+..+..+... ....+....+ . ++.-+.++|+.+|+++-+-.+.+...+.... ....+...+ T Consensus 1 m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-l-~~~~V~~~i~~Ia~~iA~lp~~~~~~~g~~~--~~~~~~~lL 76 (406) T protein:vir:97 1 MSFFQPLGTSKVSYDDYISSVLAGDVSQKYLGVSA-L-KNSDILTATSIIAGDIARFPLVKKDVNGDII--HDEDINYLL 76 (406) T ss_pred CccccccCCCCCCcchHHHHHhcCCCCcccccchh-h-ccHHHHHHHHHHHHhhhhCeeEEEecCcccc--ccchHHHHh Confidence 333321110000111111111100 0000111112 2 2445567999999998887776544332111 111122222 Q ss_pred H----HHH-HHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccCCc Q lcl|Aclame:pro 102 K----QVF-TNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQP 176 (449) Q Consensus 102 ~----~l~-~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P 176 (449) + ..- ...+|+.+... -.++|-|++++.- ++.. . .+..|.++...++++.. + +-|++ T Consensus 77 ~~~PN~~~t~~~f~~~~~~~---l~l~Gnay~~i~r-~~~~-g-------~~~~L~~i~p~~v~v~~---~----~~~~~ 137 (406) T protein:vir:97 77 NVKSTSNASARTWKFAMAVN---AILTGNSFSRILR-DPKT-N-------QALQFQFYRPSETTVEE---T----DNHEI 137 (406) T ss_pred hccCCCCCCHHHHHHHHHHH---HhhcCCeEEEEEe-cCCC-C-------eEEEEEEECCCeeEEEE---c----CCceE Confidence 1 000 01233333222 3467877777643 3221 1 12344455444444321 1 11333 Q ss_pred eeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhH Q lcl|Aclame:pro 177 KLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDF 253 (449) Q Consensus 177 ~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~ 253 (449) .|++... ..+..+.+.++.||||...+ ..|.|.++.+.+.+.....+....+ .++++....-.+. T Consensus 138 -~y~~~~~---~~~~~~~~~~~evih~r~~~~dg~~G~spi~~~~~~i~~~~a~~~~~~-~~f~ng~~~~~i~------- 205 (406) T protein:vir:97 138 -VYTFTDM---LTAKQVKCFAHDVIHWKFFSHDTILGRSPLLSLGDEIDLQTGGINTLI-KFFKDGFSSGILT------- 205 (406) T ss_pred -EEEEEec---CCceEEEEccccEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCCceEE------- Confidence 4555422 12334678899999997543 3388998888776654333333222 2334432211110 Q ss_pred HHHHhhhccChHHHHHHHHHHHHHHhccc---cceeecCCCceEEeecccCC--hHHHHHHHHHHHHhhhcCCceeeecc Q lcl|Aclame:pro 254 TNLASLYGVSIDELQDKFNEVAGEINRGN---DVLMTTQGATVTPLVTSVAD--PTATYNVNLQTAAAGVDIPTRILIGN 328 (449) Q Consensus 254 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~ed~~~~~~~lsg--l~d~~~~~~~~iaaas~IP~t~L~Gq 328 (449) ...+...++..+++.+.+....++. ..+++..+.+|+.++.+... +-+......+.||.+.+||-.+|-++ T Consensus 206 ----~~~~~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~ 281 (406) T protein:vir:97 206 ----MKGAQLSGDARQRARQEFEKMREGSVGGSPLVFDSTMEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGVN 281 (406) T ss_pred ----ecCCCCCHHHHHHHHHHHHHHhcccccCceeecCCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCCC Confidence 0011223444555555555444432 23455677889998765433 22445556789999999999888543 Q ss_pred Cccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC--CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 329 QQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA--VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTM 405 (449) Q Consensus 329 s~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~--~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~ 405 (449) +. .++.+ -.++||. ..+.|+.+.|..-+-..+..+ ...+.++|+- .. ..+..+++..++ T Consensus 282 ~~--~~~~e~~~~~f~~-------~~l~P~~~~ie~~l~~kll~~~~~~~~~i~fd~-~~--------~~~~~~~~~~~~ 343 (406) T protein:vir:97 282 SP--NQSVAQLMEDYVT-------NDLPFYFDAITSELGLKTLNDKDRRLYHIEFDT-RS--------VTGRNVDEIVKL 343 (406) T ss_pred CC--cchHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhcChhhccceeEEEec-Cc--------cchhhHHHHHHH Confidence 32 22233 3445554 234566555554333333322 1345677751 11 123445667778 Q ss_pred HHcCCccccCHHHHHHHhcCCCCCCCC------------CCC-----------CCcchhhcccccC Q lcl|Aclame:pro 406 LGSGDNPAFSREEIRTAAGYDNDDEEP------------LGE-----------EDGDEEDKATDSA 448 (449) Q Consensus 406 ~~~g~~~~~~~~e~r~~~~~~~~~~~~------------~~~-----------~~~~ee~~~~~~~ 448 (449) +++| ++|++|+|+..+++|..++. ++. ....|.....+.+ T Consensus 344 ~~~g---~~T~NE~R~~~g~~p~~~~~gD~~~~~~n~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 406 (406) T protein:vir:97 344 VNNQ---ILTPNQGLVELGKQKSTDPNMDRYQSSLNYVFLDKKEEYQDKVGIKGKGGEVNAEEDKS 406 (406) T ss_pred HhCC---CcCHHHHHHHhCCCCCCCCCCCeEeeccCccchhcccccccccccccCCCCCCCCCCCC Confidence 8887 89999999999999854321 110 0111111222222 No 79 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=99.40 E-value=1.1e-12 Score=86.22 Aligned_cols=374 Identities=11% Similarity=0.046 Sum_probs=178.3 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) ++++|--.-.....+........++ ... +.....++.+ .+.++..+.++|+++|++.-.-.+ T Consensus 18 ~~~~lf~~~~~~~~~~~~~~~~~~~-----~~~---------~~~~~~vs~~----~al~~~~v~~cv~~Ia~~iA~lp~ 79 (424) T protein:vir:45 18 LLDALFRSKSLENPSTPITGDAVDT-----DGL---------FRADVYVSPE----TAMKLAAVYSCIYVLSSSLAQMPL 79 (424) T ss_pred HHHhhccccCCCCCccccchhhhhh-----hcc---------ccCCceechH----HhhccHHHHHHHHHHHHHHhhCce Confidence 2222210000000000000000000 000 0001123322 244567788999999999988888 Q ss_pred EEecCCChhhHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccc Q lcl|Aclame:pro 81 EIIEGDDADDSED-ETSWEKKSK-QVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAG 157 (449) Q Consensus 81 ~i~~~~~~~~~~~-~~~~e~~~~-~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~ 157 (449) ++....+...... ...+...++ +=....-...+.+.+... .++|-|++++.- +... .+..|.|+... T Consensus 80 ~v~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r-~~~G---------~~~~L~~l~~~ 149 (424) T protein:vir:45 80 HVMRRHKGKVEPARDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKR-NRRG---------EVISLDCCMPW 149 (424) T ss_pred EEEEecCCceeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEE-cCCC---------cEEEEEEecCc Confidence 8754322211110 011111111 000001111233333322 456777776643 2211 12334444433 Q ss_pred cCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 158 SLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEKVEGGSGES 234 (449) Q Consensus 158 ~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~~~~~~~a~l 234 (449) .+++.. + -|+ ..|.+.. ......++++.||||.... ..|.|.++.+.+.+.....+..... - T Consensus 150 ~v~i~~---~-----~~~-~~y~~~~-----~~~~~~~~~~eVih~r~~~~d~~~G~spi~~~~~~i~~~~~~~~~~~-~ 214 (424) T protein:vir:45 150 ETTLMN---T-----GGR-YTYGLYN-----EYGAFAISPDDMIHIRALGNNQKMGLSPIMQHAETIGMGMSGQKYTE-S 214 (424) T ss_pred eEEEEE---c-----CCe-EEEEEEe-----cCceEEECcccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHH-H Confidence 333211 1 122 3455542 1224578999999986533 4589999988887765444433333 3 Q ss_pred HHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcc----c-cceeecCCCceEEeecccCC--hHHH Q lcl|Aclame:pro 235 FLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRG----N-DVLMTTQGATVTPLVTSVAD--PTAT 306 (449) Q Consensus 235 ~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~l~~~~ed~~~~~~~lsg--l~d~ 306 (449) ++++..+. ..+++. +...++..+++.+.+....++ . ..++++.+-+|+.++.+... +-+. T Consensus 215 ~f~ng~~p~gil~~~------------~~l~~e~~~~~~~~~~~~~~g~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~ 282 (424) T protein:vir:45 215 FFSGNARPAGIVSVK------------SGLNKESWGWLKDQWQKASQALRRQENKTMLLPADLDYKALTVSPVDAQIIDM 282 (424) T ss_pred HHhccCCccEEEEeC------------CCCCHHHHHHHHHHHHHHhccccccCCceeEcCCCceEEEccCChhHHHHHHH Confidence 34443321 111111 112234444444433322222 2 23556667789888776543 4567 Q ss_pred HHHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC---CC--ceEEe Q lcl|Aclame:pro 307 YNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV---AK--KAVIW 380 (449) Q Consensus 307 ~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~---~~--~~~~f 380 (449) .....++||.+.+||-.+|-+...+..++.+ -.+.||.. .+.|+.+.++.-+-..+...+ .+ +.|.. T Consensus 283 ~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~eq~~~~f~~~-------tL~P~~~~ie~~ln~kLl~~~e~~~g~~i~fd~ 355 (424) T protein:vir:45 283 MKLNRSMIAGIFNIPAHMINDLEKATFSNISAQAIQFVRY-------TMMPWVTNWEQELNRRLFTRAELAAGYYVRFNL 355 (424) T ss_pred HHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcCChhhhcCCcEEEeec Confidence 7788889999999998777544434333333 23444432 355666666554444333322 23 44555 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC-----------CC--CCCcchhhcccc Q lcl|Aclame:pro 381 DDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP-----------LG--EEDGDEEDKATD 446 (449) Q Consensus 381 ~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~-----------~~--~~~~~ee~~~~~ 446 (449) ..|...|.++++ +++.+++++| ++|++|+|+..+++|.+.-+ .. .....+++...| T Consensus 356 ~~llr~d~~~r~-------~~~~~~~~~g---~~T~NE~R~~~gl~pi~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~ 424 (424) T protein:vir:45 356 TGLLRGTPQERA-------QFYHFAITDG---WMSRNEARAFEDMNPVEGLDEMLVSVNAANPAGDFKPPKNDEGKTNE 424 (424) T ss_pred hhhhccCHHHHH-------HHHHHHHhCC---CcCHHHHHHHhCCCCCCCcceeeecccccccccccCCCCCCCCCCCC Confidence 677777777665 4555677887 99999999999998753210 00 001111111111 No 80 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=99.39 E-value=3.4e-12 Score=83.47 Aligned_cols=347 Identities=11% Similarity=0.081 Sum_probs=168.9 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcc-cccchhccCC-----cccCCHHHHHHHHHcCchhHHHHhhhHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNK-RHSAWCEYGF-----PELVTYENLYSLYRRGGIAHGAVEKLVGK 74 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~-r~~~~~~~~~-----~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d 74 (449) ..++++-... .... +......++. ...++.. .+| ++..++++|+..+++ T Consensus 3 l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~vt~~---~al-~~~~v~~~i~~Ia~~ 57 (394) T protein:vir:62 3 LRDRFSNYLF---------------------KKAEKRGYLDNVLGKSIRYSGVYVTDS---NIL-QSSDVYELLQDISNQ 57 (394) T ss_pred hhhhhhhhcc---------------------CCCCchhhhhhhhhcccccCccccChh---hhh-ccHHHHHHHHHHHHh Confidence 1222221100 0000 0001111111 1123322 344 457789999999999 Q ss_pred HhcCCcEEecCCChhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccccccEEEEEEecCCCcccccccccC Q lcl|Aclame:pro 75 CWQTNPEIIEGDDADDSEDETSWEKKSKQVFTN--------RLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGR 146 (449) Q Consensus 75 ~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~--------~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~ 146 (449) +-+-.+++...+.. ..+. .. .-.|..+ .+++.+... -.++|.|++++. +..+..| T Consensus 58 iA~lp~~v~~~~g~-~~~~--~~---~~~Ll~~PN~~~t~~~f~~~~~~~---lll~Gn~~~~i~---~~~~~~~----- 120 (394) T protein:vir:62 58 MVLADIVVEDEFGN-EIKD--DI---ALQILRNPNNYLTQSEFIKLMTNT---YLLEGETFPILN---GAQIHLA----- 120 (394) T ss_pred hcccceEEEcCCCc-ccch--hh---HHHHhccCCCCCCHHHHHHHHHHH---HHhcCCeEEEEe---cceeecc----- Confidence 99999988654321 1111 11 1112211 233333222 245677777652 2222111 Q ss_pred ceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC---CCCcchhHHHHHHHHHH Q lcl|Aclame:pro 147 GLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY---SEDAIGFLEPAYNAFVS 223 (449) Q Consensus 147 ~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~---~~~G~s~l~~~~~~l~~ 223 (449) ..+.|. .| .+.+ ..|.+ .++.+.++.|+||... ...|.|.++.+...+.. T Consensus 121 --~~~~~~-----------~~---~~~~--~~~~~---------~~~~~~~~eiih~r~~~~d~~~G~s~~~~~~~~i~~ 173 (394) T protein:vir:62 121 --SNVFTE-----------LD---DNLV--EHFNI---------GGHEIPPCMIRHVKNIGADHLRGKGILDLGRDTLEG 173 (394) T ss_pred --ccceEE-----------EC---CceE--EEEee---------CCEEechhheEEecCcCCCCccccChHHHHHHHHHH Confidence 011110 11 0111 12222 1467888888887543 34688999998887765 Q ss_pred HHHHhhHHHHHHHHHHh-hhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecCCCceEE--e Q lcl|Aclame:pro 224 LEKVEGGSGESFLKNAA-RQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQGATVTP--L 296 (449) Q Consensus 224 ~~~~~~~~a~l~~~~~~-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~--~ 296 (449) ...+...... ++++.. ....+++. ... ....+..+++.+.+....++. ..+++..+.+|+. + T Consensus 174 ~~~~~~~~~~-~~~ng~~~~~il~~~---------~~~-~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~l 242 (394) T protein:vir:62 174 VMSAEKTLTD-KYKKGGLLTFLLNLD---------AHI-NPQNGAQSKLINAILDQLESIDEARSVKMIPLGKGYSIDTL 242 (394) T ss_pred HHHHHHHHHH-HHHccCCcceEEEeC---------CCC-CcCHHHHHHHHHHHHHHhccccccCceeEeeCCCceeEEec Confidence 5554433332 233321 11111111 111 112333344444443333322 2245555666664 4 Q ss_pred ecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC Q lcl|Aclame:pro 297 VTSVA--DPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV 373 (449) Q Consensus 297 ~~~ls--gl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~ 373 (449) +.+.. .+-+.......+||.+.+||-.+|-| ... +..+ -.++||.. .+.|+.+.+..-+-..+..+. T Consensus 243 ~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-~~~--sn~e~~~~~~~~~-------~l~P~~~~ie~~l~~kll~~~ 312 (394) T protein:vir:62 243 KSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTE-LIK--EDIEKAMMYIHNK-------AVRPIMKNFEDHLSLLFYAQN 312 (394) T ss_pred CCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCC-CCC--cCHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhcCcc Confidence 43332 34555667789999999999877733 211 2222 34455543 367777776655544443332 Q ss_pred --CCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCCCC-------Ccch---- Q lcl|Aclame:pro 374 --AKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGEE-------DGDE---- 440 (449) Q Consensus 374 --~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~~~-------~~~e---- 440 (449) ..+.|+|+.+--++..+++ +++.+++++| ++|++|+|+..+++|..++..+.. ..++ T Consensus 313 ~~~~~~~~fd~~~~~~~~~~~-------~~~~~~~~~g---~~T~NE~R~~~gl~p~~~~~gd~~~~~~n~~~~~~~~~~ 382 (394) T protein:vir:62 313 SGKRIKFKINILDFVTYSNKT-------NIGYNLVRTA---ITSPDNVADMLGFPKQNTKESQAIYISNDVTEIGKKEAT 382 (394) T ss_pred ccCceEEEechhhhcCHHHHH-------HHHHHHHhCC---CcCHHHHHHHhCCCCCCCCCCCeeecccccccccccccc Confidence 3588999988888776544 4567888888 999999999999998633211110 0000 Q ss_pred -----hhccccc Q lcl|Aclame:pro 441 -----EDKATDS 447 (449) Q Consensus 441 -----e~~~~~~ 447 (449) .+..-|+ T Consensus 383 ~~~~kgge~~en 394 (394) T protein:vir:62 383 DGSLGGGEENEN 394 (394) T ss_pred cccCCCCCCCCC Confidence 0000111 No 81 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=99.39 E-value=3.1e-12 Score=83.69 Aligned_cols=371 Identities=14% Similarity=0.072 Sum_probs=175.6 Q ss_pred HHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHH- Q lcl|Aclame:pro 25 LMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQ- 103 (449) Q Consensus 25 ~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~- 103 (449) .+..-+|.|. . ..| +.....+. -...|..+..+.++|++.+++.-.-.+.+..++.... + ...+...++. T Consensus 1 ~~~~~~~~g~-~-~~~---~~~~~~~~--~~~~~~~~~~V~acV~~Ia~~iA~lpl~l~~~~~~~~-~-~~~l~~lL~~~ 71 (723) T protein:vir:94 1 MTTFPSGAGG-W-NAW---SADSVFGN--GAKGWSNSAVAYRCISMLANNAASVDLVVRGPDGELD-E-LHPLSQLWNVM 71 (723) T ss_pred CcccccCCCc-c-ccc---cccccccc--cHHHHhhhHHHHHHHHHHHHhhccceeEEEcCCCccc-h-hhHHHHHHhhC Confidence 1112222221 1 111 11111111 1235778899999999999999888888765432211 1 1122222210 Q ss_pred HHHHHHHHHHHHHHHhcc-ccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhcccccccc-CCceeEEe Q lcl|Aclame:pro 104 VFTNRLWRSFAEADRRRL-VGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTY-GQPKLWKY 181 (449) Q Consensus 104 l~~~~~~~~~~ea~~~~r-l~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~y-g~P~~y~i 181 (449) =....-...|.+.+.+.. ++|.+++++.- ++.... .....+.++....+.+... .+ ....| +....|.+ T Consensus 72 PN~~~t~~~f~~~~~~~lll~Gnay~~i~r-~~r~~~------g~p~~l~~l~~~~~~v~~~-~~-~~~~~~~~~~~y~~ 142 (723) T protein:vir:94 72 PNRAMPAQVLKALSMTRLQLDGQCHLWLNY-NGRTPA------GVPDEIWYVYDRVTTIVAT-RA-ADAVPQAQIIGYVI 142 (723) T ss_pred CCCCCCHHHHHHHHHHHHhhcCCeEEEEEe-cCCccc------cceeEEEEecCcceEEeec-CC-CccceeeeeeEEEE Confidence 000001122334444333 56777777655 333211 0122233333221111111 11 11111 11234444 Q ss_pred eecccCCCccceEEccceeeeccC----CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHH Q lcl|Aclame:pro 182 TERLPNGSSRRVDIHPDRVFILGD----YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLA 257 (449) Q Consensus 182 ~~~~~~~~~~~~~IH~SRli~~~~----~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~ 257 (449) ... .+..+.++.+.||||.. +.+.|.|.++.+...|.....+.. ....++++..+. ..+. T Consensus 143 ~~~----~G~~~~~~~~dIiHir~~~~~dg~~G~Spi~~a~~~i~~~~aa~~-~~~~~f~NG~~p-----------~giL 206 (723) T protein:vir:94 143 ERT----DGVRVPVLADEMLWLRFSDPYDPLAVMAPWKAARAAVDADFYAAT-WQRQSFKNGARP-----------GGVV 206 (723) T ss_pred Eec----CceeEEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHH-HHHHHHhcCCCc-----------ceEE Confidence 321 23346788999999854 234699999988776654443322 233344443221 0111 Q ss_pred hhhccChHHHHHHHHHHHHHH-----hcccccee---------ecCCCceEEeecccC--ChHHHHHHHHHHHHhhhcCC Q lcl|Aclame:pro 258 SLYGVSIDELQDKFNEVAGEI-----NRGNDVLM---------TTQGATVTPLVTSVA--DPTATYNVNLQTAAAGVDIP 321 (449) Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l---------~~~~ed~~~~~~~ls--gl~d~~~~~~~~iaaas~IP 321 (449) .. +...++..+++.+.+... |.+...++ .+++-+|+.++.+.. .+-+......+.||.+.+|| T Consensus 207 ~~-~~l~~e~~~~~~~~~~~~~~G~~Nagk~~vL~g~~~~~~vl~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVP 285 (723) T protein:vir:94 207 NL-GDMDEQTFTKTVAAFRSQVEGVQNAGRHLLIAGQGSDGGAAGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIR 285 (723) T ss_pred Ec-CCCCHHHHHHHHHHHHHHhhchhhcCcceeecccccccccccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCC Confidence 11 112233344444333322 22222222 123446777765533 23455566788899999999 Q ss_pred ceeeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-CCCCceEEeCC--CCCCCHHHHHHHHHHH Q lcl|Aclame:pro 322 TRILIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIID-AVAKKAVIWDD--LNEQTGTEKLTNAKTM 398 (449) Q Consensus 322 ~t~L~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~-~~~~~~~~f~p--L~~~sekE~Aei~~~~ 398 (449) -..|.|.++. .|..+-.+.||. ..+.|+.+.++.-+-..+.. .-.++.|+|+. |...|.+++ T Consensus 286 p~~i~~~st~-sN~e~~~~~f~~-------~tL~P~~~~ie~~ln~~Ll~~~g~~~~~~f~~~~lLr~D~~~r------- 350 (723) T protein:vir:94 286 KDALLGGSTY-ENQAEAKAAVWT-------ETLIPQMEVMASITDLQLLPDIGWTVEWDFNSVPALQEDLEAQ------- 350 (723) T ss_pred hhHcCCCCCc-ccHHHHHHHHHH-------HHHHHHHHHHHHHHhHhhcccccCceEEeecchhhhhcCHHHH------- Confidence 8888665432 122223344553 23566666666544333322 12356788875 566666655 Q ss_pred HHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC-----C---------CC-CCcchhhcccccCC Q lcl|Aclame:pro 399 GEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP-----L---------GE-EDGDEEDKATDSAA 449 (449) Q Consensus 399 A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~-----~---------~~-~~~~ee~~~~~~~a 449 (449) ++++.+++++| ++|++|+|+..+++|...-. . +. .+..+++. +-..| T Consensus 351 ~~~~~~~v~~G---~~T~NE~R~~lglpPi~gGd~~~~~~p~~~~~a~~~~~~p~~~e~~-~~~~~ 412 (723) T protein:vir:94 351 AGRNQGYLVND---VLMVDEVRATIGLDPLPGGIGQMTLTPYRAQFAPAPAPAPAVEEGA-ARMLA 412 (723) T ss_pred HHHHHHHHhCC---CcCHHHHHHHhCCCCCCCCcccceeccccccccCCCCCCccchhhh-Hhhhh Confidence 45777888888 99999999999998863211 0 00 11111111 00000 No 82 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=99.37 E-value=2e-12 Score=84.74 Aligned_cols=387 Identities=13% Similarity=0.060 Sum_probs=179.2 Q ss_pred Cc------hhhHHHHHhhhHHH--HH-HHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhh Q lcl|Aclame:pro 1 MT------DKLTLAVNHALNDA--RM-ARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKL 71 (449) Q Consensus 1 ~~------~~~~~~v~~~~~~~--~~-~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~p 71 (449) |. +|=.|+|....... |. ......+........+.. . .....++.+ .+ .++.-+.++|+++ T Consensus 11 ~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~---~a-l~~~~V~~cv~~I 80 (441) T protein:vir:94 11 VDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQ----G--TKLRQYKDI---EA-IRHSDIFTAVMMI 80 (441) T ss_pred ccccccccchhhhhccccccccccccccCCCcchHHHHHHhcccC----c--ccccccchh---hh-hccHHHHHHHHHH Confidence 22 22222222222100 00 000000000000000000 0 000112211 11 2344567799999 Q ss_pred HHHHhcCCcEEecCCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-ccccccEEEEEEecCCCcccccccccCcee Q lcl|Aclame:pro 72 VGKCWQTNPEIIEGDDADDSEDETSWEKKSK-QVFTNRLWRSFAEADRR-RLVGRYAGILLHIRDEKDWNLPATKGRGLQ 149 (449) Q Consensus 72 a~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~-~l~~~~~~~~~~ea~~~-~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~ 149 (449) +++.-+-.+++..+.+.... . .+-..++ +=....-...+.+.+.+ -.++|-|++++.- ++.. .+. T Consensus 81 a~~iA~lp~~~~~~~~~~~~--~-~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r-~~~G---------~~~ 147 (441) T protein:vir:94 81 ASDLARMPIRVTVNGQINYS--D-RIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITR-DKTG---------EPM 147 (441) T ss_pred HHhhccCceeeecCcccccc--c-hHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEE-CCCC---------cEE Confidence 99988888887653322111 1 1111111 00000001122222222 3567888777643 3221 133 Q ss_pred eEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHHH Q lcl|Aclame:pro 150 KVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEK 226 (449) Q Consensus 150 ~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~~ 226 (449) .|.++....+++. .| ..|.+.++. ......+....+.++++-||||...+ +.|.|.++.+.+.|..... T Consensus 148 ~L~~i~~~~v~v~---~d----~~g~~~~~~-~~~~~~~~~~~~~~~~~dvih~k~~~~dg~~G~spl~~~~~~i~~~~~ 219 (441) T protein:vir:94 148 NLTFRKTSEIELK---SD----ARGRLYYFH-QRIDSNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNN 219 (441) T ss_pred EEEEEcCceeEEE---EC----CCccEEEEE-EEeccCCceeEEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHH Confidence 4555544444431 12 124444332 22222223334568889999986433 3588999988876654443 Q ss_pred HhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccC-hHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccC Q lcl|Aclame:pro 227 VEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVS-IDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVA 301 (449) Q Consensus 227 ~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~ls 301 (449) +... ...++++..+. ..+....+.. .++..+++.+......++. ..+++..+.+|+.++.+.. T Consensus 220 ~~~~-~~~~f~ng~~p-----------~gil~~~~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~~~~~ 287 (441) T protein:vir:94 220 GKDF-LNNFLRNGTHA-----------GGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTE 287 (441) T ss_pred HHHH-HHHHHhccCCC-----------cEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChh Confidence 3322 22333432221 1111111111 2344445544444433332 2466667788999876643 Q ss_pred --ChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC--Cce Q lcl|Aclame:pro 302 --DPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVA--KKA 377 (449) Q Consensus 302 --gl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~--~~~ 377 (449) .+-+......+.||.+.|||-..| |...++.+ .+....+|. ..+.|+++.++.-+-..+.+.-. .|. T Consensus 288 d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~s-~~q~~~~~~-------~tl~P~~~~ie~eln~kl~~~~~~~~~~ 358 (441) T protein:vir:94 288 VLKLIRENKSSTREIAGVFGIPLHKF-GIETANMS-ITDANLDYL-------STLKPYITCVCAELNFKFNDEYVNREFK 358 (441) T ss_pred HHHHHHHHHHhHHHHHHHhCCCHHHc-CCCCCCcc-HHHHHHHHH-------HHHHHHHHHHHHHHhhhccccccCceEE Confidence 355666778889999999998765 75444332 233222322 12456666665544444433222 355 Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCC----------CCCCcchhhccc-- Q lcl|Aclame:pro 378 VIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPL----------GEEDGDEEDKAT-- 445 (449) Q Consensus 378 ~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~----------~~~~~~ee~~~~-- 445 (449) |.+..|...|.+++ ++++++++++| ++|++|+|+..+++|..+... +.+..++.+... T Consensus 359 fd~~~llr~D~~~~-------~~~~~~~i~~G---~~T~NE~R~~~gl~Pi~ggd~~~~~~~~n~~~~~~~~~~~~~~~~ 428 (441) T protein:vir:94 359 FDTTEIRVVDEKTQ-------AEIDKINIDSG---KMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSR 428 (441) T ss_pred eechhhhccCHHHH-------HHHHHHHHhCC---CcCHHHHHHHhCCCCCCCCCcceEeeccccccccccccccccccc Confidence 66667777777765 55667778887 999999999999988532110 111111111000 Q ss_pred --ccCC Q lcl|Aclame:pro 446 --DSAA 449 (449) Q Consensus 446 --~~~a 449 (449) +..- T Consensus 429 ~~~~~~ 434 (441) T protein:vir:94 429 ATDKKL 434 (441) T ss_pred cccccc Confidence 0000 No 83 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=99.37 E-value=2e-12 Score=84.74 Aligned_cols=387 Identities=13% Similarity=0.060 Sum_probs=179.2 Q ss_pred Cc------hhhHHHHHhhhHHH--HH-HHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhh Q lcl|Aclame:pro 1 MT------DKLTLAVNHALNDA--RM-ARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKL 71 (449) Q Consensus 1 ~~------~~~~~~v~~~~~~~--~~-~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~p 71 (449) |. +|=.|+|....... |. ......+........+.. . .....++.+ .+ .++.-+.++|+++ T Consensus 11 ~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~---~a-l~~~~V~~cv~~I 80 (441) T protein:vir:79 11 VDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQ----G--TKLRQYKDI---EA-IRHSDIFTAVMMI 80 (441) T ss_pred ccccccccchhhhhccccccccccccccCCCcchHHHHHHhcccC----c--ccccccchh---hh-hccHHHHHHHHHH Confidence 22 22222222222100 00 000000000000000000 0 000112211 11 2344567799999 Q ss_pred HHHHhcCCcEEecCCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-ccccccEEEEEEecCCCcccccccccCcee Q lcl|Aclame:pro 72 VGKCWQTNPEIIEGDDADDSEDETSWEKKSK-QVFTNRLWRSFAEADRR-RLVGRYAGILLHIRDEKDWNLPATKGRGLQ 149 (449) Q Consensus 72 a~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~-~l~~~~~~~~~~ea~~~-~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~ 149 (449) +++.-+-.+++..+.+.... . .+-..++ +=....-...+.+.+.+ -.++|-|++++.- ++.. .+. T Consensus 81 a~~iA~lp~~~~~~~~~~~~--~-~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r-~~~G---------~~~ 147 (441) T protein:vir:79 81 ASDLARMPIRVTVNGQINYS--D-RIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITR-DKTG---------EPM 147 (441) T ss_pred HHhhccCceeeecCcccccc--c-hHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEE-CCCC---------cEE Confidence 99988888887653322111 1 1111111 00000001122222222 3567888777643 3221 133 Q ss_pred eEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHHH Q lcl|Aclame:pro 150 KVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEK 226 (449) Q Consensus 150 ~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~~ 226 (449) .|.++....+++. .| ..|.+.++. ......+....+.++++-||||...+ +.|.|.++.+.+.|..... T Consensus 148 ~L~~i~~~~v~v~---~d----~~g~~~~~~-~~~~~~~~~~~~~~~~~dvih~k~~~~dg~~G~spl~~~~~~i~~~~~ 219 (441) T protein:vir:79 148 NLTFRKTSEIELK---SD----ARGRLYYFH-QRIDSNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNN 219 (441) T ss_pred EEEEEcCceeEEE---EC----CCccEEEEE-EEeccCCceeEEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHH Confidence 4555544444431 12 124444332 22222223334568889999986433 3588999988876654443 Q ss_pred HhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccC-hHHHHHHHHHHHHHHhccc----cceeecCCCceEEeecccC Q lcl|Aclame:pro 227 VEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVS-IDELQDKFNEVAGEINRGN----DVLMTTQGATVTPLVTSVA 301 (449) Q Consensus 227 ~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~l~~~~ed~~~~~~~ls 301 (449) +... ...++++..+. ..+....+.. .++..+++.+......++. ..+++..+.+|+.++.+.. T Consensus 220 ~~~~-~~~~f~ng~~p-----------~gil~~~~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~~~~~ 287 (441) T protein:vir:79 220 GKDF-LNNFLRNGTHA-----------GGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTE 287 (441) T ss_pred HHHH-HHHHHhccCCC-----------cEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChh Confidence 3322 22333432221 1111111111 2344445544444433332 2466667788999876643 Q ss_pred --ChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC--Cce Q lcl|Aclame:pro 302 --DPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVA--KKA 377 (449) Q Consensus 302 --gl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~--~~~ 377 (449) .+-+......+.||.+.|||-..| |...++.+ .+....+|. ..+.|+++.++.-+-..+.+.-. .|. T Consensus 288 d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~s-~~q~~~~~~-------~tl~P~~~~ie~eln~kl~~~~~~~~~~ 358 (441) T protein:vir:79 288 VLKLIRENKSSTREIAGVFGIPLHKF-GIETANMS-ITDANLDYL-------STLKPYITCVCAELNFKFNDEYVNREFK 358 (441) T ss_pred HHHHHHHHHHhHHHHHHHhCCCHHHc-CCCCCCcc-HHHHHHHHH-------HHHHHHHHHHHHHHhhhccccccCceEE Confidence 355666778889999999998765 75444332 233222322 12456666665544444433222 355 Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCC----------CCCCcchhhccc-- Q lcl|Aclame:pro 378 VIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPL----------GEEDGDEEDKAT-- 445 (449) Q Consensus 378 ~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~----------~~~~~~ee~~~~-- 445 (449) |.+..|...|.+++ ++++++++++| ++|++|+|+..+++|..+... +.+..++.+... T Consensus 359 fd~~~llr~D~~~~-------~~~~~~~i~~G---~~T~NE~R~~~gl~Pi~ggd~~~~~~~~n~~~~~~~~~~~~~~~~ 428 (441) T protein:vir:79 359 FDTTEIRVVDEKTQ-------AEIDKINIDSG---KMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSR 428 (441) T ss_pred eechhhhccCHHHH-------HHHHHHHHhCC---CcCHHHHHHHhCCCCCCCCCcceEeeccccccccccccccccccc Confidence 66667777777765 55667778887 999999999999988532110 111111111000 Q ss_pred --ccCC Q lcl|Aclame:pro 446 --DSAA 449 (449) Q Consensus 446 --~~~a 449 (449) +..- T Consensus 429 ~~~~~~ 434 (441) T protein:vir:79 429 ATDKKL 434 (441) T ss_pred cccccc Confidence 0000 No 84 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=99.36 E-value=1.8e-11 Score=79.55 Aligned_cols=410 Identities=11% Similarity=0.025 Sum_probs=172.8 Q ss_pred CchhhHHHHHh---------hhHHHHHHHHHHHHHHHHhhcCcccccchhc---------cCCcc---cC----CHHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNH---------ALNDARMARARMGLMVPTMGLDNKRHSAWCE---------YGFPE---LV----TYENLY 55 (449) Q Consensus 1 ~~~~~~~~v~~---------~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~---------~~~~~---~~----~~~~l~ 55 (449) .++|+++++.- +..-....+-..+..+.......+.++++.. -++.. .+ +...+. T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~l 87 (576) T protein:vir:96 8 IFKRLRLGRDYEDIIDTVPIDDGLQANIRNIEEKSKELNKSLYGKQQAYAEPFLEVMDTNPEFRTKRSYMKNSDNLHDVL 87 (576) T ss_pred HHHHHhccCccccchhhhhcccChhHHHHHhhhhhhhhccccCCccchhhcceeeeeecCCCccccCcchhhhhhhHHHH Confidence 22222211110 0000000000111111111111122222111 11211 11 233455 Q ss_pred HHHHcCchhHHHHhhhHHHHhc-----------CCcEEec--CCChhhHHHHHH---HHHHHHHHHHH-----HHHHHHH Q lcl|Aclame:pro 56 SLYRRGGIAHGAVEKLVGKCWQ-----------TNPEIIE--GDDADDSEDETS---WEKKSKQVFTN-----RLWRSFA 114 (449) Q Consensus 56 ~~Y~~~~l~r~iVd~pa~d~~r-----------~~~~i~~--~~~~~~~~~~~~---~e~~~~~l~~~-----~~~~~~~ 114 (449) ..|..|+++++||++.++++.+ -++.|.- .+.......... ++.-+..+... .-+..|. T Consensus 88 ~~~~~npiv~~~I~~ia~~vA~~~~~~~~~~~~~~~~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~ 167 (576) T protein:vir:96 88 KQFGNNPILNAIILTRSNQVAMYCQPSRYNERGLGFEVRMRDLDAEPGKKEKEEIKRIENFILNTGRDKDIDRDSFQSFC 167 (576) T ss_pred HHhhcCHHHHHHHHHHHHHHHhhhhhhhhccccccceeEEecCcCccchhhhHhhhhHHhhHhhccCCCCCccccHHHHH Confidence 6788899999999999998654 1223311 111111111111 11111111110 0112233 Q ss_pred HHHHh-ccccccEEEEEEe-cCCCcccccccccCceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccc Q lcl|Aclame:pro 115 EADRR-RLVGRYAGILLHI-RDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRR 192 (449) Q Consensus 115 ea~~~-~rl~Gga~i~i~i-~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~ 192 (449) +.+.+ -.++|-+++.+.. .++.. .+..|.++....+++.. |.....|..+..|... ...... T Consensus 168 ~~lv~dlll~Gna~~~i~~~rd~~g---------~~~~L~pl~p~~V~v~~---~~dg~~~~~~~~~~~~----~~~~~~ 231 (576) T protein:vir:96 168 RKIVRDTYTYDQVNFEKVFNKKNAT---------TMDKFIAVDPSTIFYAT---DKNGKIIKGGKRFVQV----INKKVV 231 (576) T ss_pred HHHHHHHHhcCCeEEEEEEecCCCC---------ceEEEEEeCCceeEEEE---CCCCceeeeeeEEEEe----cCCceE Confidence 33333 3568888877665 23221 13344444444443321 2222222223322211 111223 Q ss_pred eEEccceeeeccCC-------CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh-hhhhhhhhhHHHHHhhhccCh Q lcl|Aclame:pro 193 VDIHPDRVFILGDY-------SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQL-NVNFEKEIDFTNLASLYGVSI 264 (449) Q Consensus 193 ~~IH~SRli~~~~~-------~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l-~~~~~~~~~~~~l~~~~~~~~ 264 (449) ..+.++.+|++.-+ ...|.|.++.+...|.....+..... -++++....- .+++.. ..... T Consensus 232 ~~~~~~dii~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~-~~f~Ng~~p~giL~~~~----------~~~ls 300 (576) T protein:vir:96 232 ASFTSREMAMGIRNPRTELSSSGYGLSEVEIAMKQFIAYNNTETFND-RFFSHGGTTRGILQIKS----------EQQQS 300 (576) T ss_pred EEecccceEEEeecCCCCcccCcccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCCceEEEeCC----------CCCCC Confidence 34555565554311 34599999998887765555433333 2333332211 111100 01123 Q ss_pred HHHHHHHHHHHHHHhccc---c--ceeecCCCceEEeecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCccccc--- Q lcl|Aclame:pro 265 DELQDKFNEVAGEINRGN---D--VLMTTQGATVTPLVTSVA--DPTATYNVNLQTAAAGVDIPTRILIGNQQAERS--- 334 (449) Q Consensus 265 ~~~~~~~~~~~~~~~~~~---~--~~l~~~~ed~~~~~~~ls--gl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~--- 334 (449) ++..+++.+.+....+|. + .+++..+-+|+.++.+.. .+-+......+.||.+.+||-.+| |-..++.+ T Consensus 301 ~e~~~~lr~~~~~~~~G~~nag~~p~vl~~G~~~~~ls~~~~d~qfle~~~~~~~~Ia~afgVPp~~l-G~~~~~~~~g~ 379 (576) T protein:vir:96 301 QRALENFKREWKSSFSGINGSWQVPVVMADDIKFVNMTPTANDMQFEKWLTYLINIISALYGIDPAEI-GFPNRGGATGG 379 (576) T ss_pred HHHHHHHHHHHHHHhccccccccceeecCCCceEEeccCChhhHHHHHHHHHhHHHHHHHhCCCHHHc-ccccccccccc Confidence 445555555555443332 1 245566778888876644 467777888999999999998666 64332211 Q ss_pred -cchhH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC Q lcl|Aclame:pro 335 -STEDQ--KYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA-VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGD 410 (449) Q Consensus 335 -s~eD~--~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~-~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~ 410 (449) .+++. .|.-..-.+.-+..+.|+++.+...+-..+... -..+.|+|. ..+.+.+++.. + ....+.+| T Consensus 380 ~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~~~~~~f~---r~d~~~~~e~~----~-~~~~~~~G- 450 (576) T protein:vir:96 380 KGGNTLNEADPGKKQQQSQNKGLQPLLRFIEDLINTHIISEYSDKYVFQFV---GGDTKSELDKI----K-ILQEEVKT- 450 (576) T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccCceEEEec---cCCHHHHHHHH----H-HHHHHhcC- Confidence 11111 111111111112345676666665443333221 234566653 34444444432 1 12233355 Q ss_pred ccccCHHHHHHHhcCCCCCC--CCC--------C-----CCCcchhhccc-----------------ccCC Q lcl|Aclame:pro 411 NPAFSREEIRTAAGYDNDDE--EPL--------G-----EEDGDEEDKAT-----------------DSAA 449 (449) Q Consensus 411 ~~~~~~~e~r~~~~~~~~~~--~~~--------~-----~~~~~ee~~~~-----------------~~~a 449 (449) .+|++|+|+..+++|... ... . +..+.+.+++. +.+. T Consensus 451 --~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 519 (576) T protein:vir:96 451 --YKTVNEARKEKGLKPIEGGDVLLDGSFIQSMSLNTQKEQYEDTKQKERFDMIQQFLNSPDDEEPQQEST 519 (576) T ss_pred --ccCHHHHHHHhCCCCCCCcceeccccccccccccccCCCCCCccccccccccccccCCCCCCCCCCCCC Confidence 889999999999987532 100 0 00000000000 0000 No 85 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=99.35 E-value=9.2e-12 Score=81.09 Aligned_cols=392 Identities=11% Similarity=0.024 Sum_probs=177.6 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) |++--- ++....+-..+.. ... ......+..+ . ++...+++..|.++|..|.+++.||+..+++.-.-++ T Consensus 1 ~~~~~~-~~~~~~~~~~~~~-~~~------~~~~~~~~~~-~-~~~pp~~~~~La~~~~~n~~v~scI~~ia~~ia~~~~ 70 (540) T protein:vir:41 1 MFNYHL-SIKSLEKYRAIKG-DTD------SQALKEDRFE-E-YVEPKVHPLVLLSLLQVNPYHASACSIKANDILRTGY 70 (540) T ss_pred CCCccc-Chhhccchhhhhc-ccc------ccccccCCCC-c-cccCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCc Confidence 665332 3443332111111 000 0011111111 1 2344578899999999999999999999999999999 Q ss_pred EEecCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccccC Q lcl|Aclame:pro 81 EIIEGDDADDSEDETSWEKKSKQV-FTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSL 159 (449) Q Consensus 81 ~i~~~~~~~~~~~~~~~e~~~~~l-~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i 159 (449) ++...+..-... .-+.. -...+++.+... -.++|-|++.+.-++... +..|.++....+ T Consensus 71 ~i~~~~~~~~~~-------lpN~~~t~~~f~~~~v~d---lll~Gnayv~i~r~~~G~----------~~~L~~i~~~~V 130 (540) T protein:vir:41 71 LIDGDDGGVEEL-------LRACRPSFEFILLQALED---LQVFNYCTLEVVRDDQGE----------PVRLDYIPAHTV 130 (540) T ss_pred eEecCccchhhh-------ccCCCCCHHHHHHHHHHH---HHhcCCeEEEEEECCCCc----------EEEEEEeCCcce Confidence 885443221110 00000 001233333222 246788887775532111 223333333333 Q ss_pred Chhh----h--hcccc----ccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHH Q lcl|Aclame:pro 160 KVAE----W--DTGIN----SKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLE 225 (449) Q Consensus 160 ~~~~----~--~~Dp~----s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~ 225 (449) ++.. + ..|.. ...|+.+..+.. ........+.++-||||... ...|.|.+..+...+.... T Consensus 131 ~v~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~eViHir~~~~~~~~~G~Spi~~~~~~i~~~~ 205 (540) T protein:vir:41 131 RVHRDGSRYMQTWDGIHVTYFKDYRYEGEVNP-----DNGEDQDGVGANEIIFIHLPSPICSYYGVPRYLSAAPSILAMQ 205 (540) T ss_pred EEeEcCceeEeeecCceeeeeecccccceeec-----cccccceeecccceEEecCCCCCCCcccccHHHHHHHHHHHHH Confidence 2210 0 01110 111221111111 11223456778889988643 3579999988887765544 Q ss_pred HHhhHHHHHHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhc----cccceeec-------CCCce Q lcl|Aclame:pro 226 KVEGGSGESFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINR----GNDVLMTT-------QGATV 293 (449) Q Consensus 226 ~~~~~~a~l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~-------~~ed~ 293 (449) .+... ...++++.... ..+++.. .+.+-............+++........+ +-+..++. .+-+| T Consensus 206 ~~~~~-~~~~f~Ng~~p~giL~~~g--~l~~e~~~~~~~~~~~~~~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~ 282 (540) T protein:vir:41 206 KIDEY-NYAFFDNYTIPSYVITVTG--EFEDEMELGSDGEPTGRTVLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTF 282 (540) T ss_pred HHHHH-HHHHHhccCCCceEEEeCc--ccCchhccchHHHHHHHHHHHHHHHHHhccccccccceEEEecCCCcccceeE Confidence 43322 33334443221 1111110 00000000011112222333322222111 12223332 23356 Q ss_pred EEeecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCc-cc--cccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 294 TPLVTSVA--DPTATYNVNLQTAAAGVDIPTRILIGNQQ-AE--RSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIEL 367 (449) Q Consensus 294 ~~~~~~ls--gl~d~~~~~~~~iaaas~IP~t~L~Gqs~-gg--~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~ 367 (449) +.++.+.. .+-+......+.||++.+||-.+| |-.. +. .++.+ -.+.||.. .+.|+.+.+...+-. T Consensus 283 ~pl~~~~~d~qfle~~~~~~~eIa~afgVPp~~l-G~~~~~~~n~sn~eq~~~~f~~~-------tL~P~~~~ie~~ln~ 354 (540) T protein:vir:41 283 TPLNTSQKELSFREYAAEKKHDIAAAHMIDPYRL-GITDVGPLGGNFAEVARRTYYES-------VVRPQQEIVSSVLTD 354 (540) T ss_pred EecccchhHHHHHHHHHHHHHHHHHHhCCCHHHc-CcccCCCCCcccHHHHHHHHHHH-------HHHHHHHHHHHHHHH Confidence 66655443 345677788899999999998655 7433 22 23334 45667653 234555444443322 Q ss_pred hcC-CCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHh-cCCCCCCCCCC-------CCCc Q lcl|Aclame:pro 368 KII-DAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAA-GYDNDDEEPLG-------EEDG 438 (449) Q Consensus 368 ~~~-~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~-~~~~~~~~~~~-------~~~~ 438 (449) .+. ....++.|+|+.-.-+. .+. +....+++++| ++|++|+|+.. ++++.++..+. +... T Consensus 355 ~L~~~~~~~~~i~f~~~~ll~----~D~----~~~~~~lv~~G---~lT~NE~Re~L~g~e~gdd~~l~p~n~~~~~~~~ 423 (540) T protein:vir:41 355 FIQLKLDPGARFVFNEEILME----SEF----VHNYALLVQCG---VLTPSEVREKLFGLDGGPDMFMVPSSIGKSAMKR 423 (540) T ss_pred hhhhccCCceEEEecchhhcc----hHH----HHHHHHHHhCC---CCCHHHHHHHhCcCcCCCcccccccccccccccc Confidence 222 22346778887543322 221 12244677887 89999999754 77765443110 0000 Q ss_pred chh--hcc-----------cccCC Q lcl|Aclame:pro 439 DEE--DKA-----------TDSAA 449 (449) Q Consensus 439 ~ee--~~~-----------~~~~a 449 (449) ++. ++. .+++. T Consensus 424 ~~~~~~~~~~~~~~k~~~~~~~~~ 447 (540) T protein:vir:41 424 QKRNYEKNQINEIKRTYAKYKPRI 447 (540) T ss_pred cccccCCCCccccccccchhcccc Confidence 000 000 00000 No 86 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=99.35 E-value=2.1e-12 Score=84.63 Aligned_cols=367 Identities=13% Similarity=0.073 Sum_probs=164.7 Q ss_pred HHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSK 102 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~ 102 (449) |++++..... +.+.....++...++. -....|..+..+.++|+++|.++-+-.+.+....+... ....+...++ T Consensus 1 Mgl~d~~~~~---~~~~~~~~~~~~~~~~-~~~~~~l~~~~v~~~i~~Ia~~ia~lp~~v~~~~~~~~--~~~~~~~lL~ 74 (395) T protein:vir:96 1 MGILDFFSFK---KSGTLSDDDSGSTTSE-KLTNVVLKEDALYKCVNYLARIISKSTFRIKAPEKLTE--NQKDWLYWIN 74 (395) T ss_pred CcchhhhcCC---CCccccccccccchhh-hcchhhhhhHHHHHHHHHHHHhhccceeEEEeCCcccc--ccchHHHHHh Confidence 5555432111 1111111112222221 12345556778899999999999998888765432211 1111222221 Q ss_pred H-HHHHHHHHHHHHHHHhcc-ccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccCCceeEE Q lcl|Aclame:pro 103 Q-VFTNRLWRSFAEADRRRL-VGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWK 180 (449) Q Consensus 103 ~-l~~~~~~~~~~ea~~~~r-l~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~ 180 (449) . -....-...+.+.+.+.. ++|.|++++ +++.... |.+. +. .. ....|+ .++. T Consensus 75 ~~PN~~~t~~~f~~~l~~~lll~Gna~~~~-~~~~~~~--~~~~----------~~--~~------~~~~~~----~~~~ 129 (395) T protein:vir:96 75 TKANPNQSASQFWVEVVQKLLVDGETLIFV-IPGKGIY--VADA----------FT--QD------KKLSGN----KFKV 129 (395) T ss_pred hcCCCCCCHHHHHHHHHHHHhhcCceEEEE-EcCCcee--cCCc----------cc--cc------cccccc----eeee Confidence 0 000001122333333334 456665554 3332110 1000 00 00 000011 1111 Q ss_pred eeecccCCCccceEEccceeeeccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhh-hhhhhHHHHHhh Q lcl|Aclame:pro 181 YTERLPNGSSRRVDIHPDRVFILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNF-EKEIDFTNLASL 259 (449) Q Consensus 181 i~~~~~~~~~~~~~IH~SRli~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~-~~~~~~~~l~~~ 259 (449) +.. ++..-...+.++.|+||......+.+.+..++...... ...+-++..++....+..++ ............ T Consensus 130 v~~---~~~~~~~~~~~~dvih~k~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (395) T protein:vir:96 130 SRV---QGQTYEKIFTFDQVIYLKNDNSDLMLKVESLWEEYGEL---LGHVINNQKIANQIRFTMTPPKDKVRERAQENS 203 (395) T ss_pred eee---ccceeeeEeccCceEEecccCCccccccccccchHHHH---HHHHHHHHHHHHHHHHHhhhcccccccceeecc Confidence 110 11111345788889998644333332222222211111 00000000000000011111 000111111122 Q ss_pred hccChHH-HHHHHHHHHHHHhcccccee-ecCCCceEEeecccCCh--------HHHHHHHHHHHHhhhcCCceeeeccC Q lcl|Aclame:pro 260 YGVSIDE-LQDKFNEVAGEINRGNDVLM-TTQGATVTPLVTSVADP--------TATYNVNLQTAAAGVDIPTRILIGNQ 329 (449) Q Consensus 260 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l-~~~~ed~~~~~~~lsgl--------~d~~~~~~~~iaaas~IP~t~L~Gqs 329 (449) .+....+ ..+...+.....+.+-..++ +..+-+|+.++.+.... .++.....++||.+-|||-.+| | T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~~l-~-- 280 (395) T protein:vir:96 204 DGGRQPKSDKDFFKRTIEKIRTESVVGIPVTANTNYEEYGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPISLL-H-- 280 (395) T ss_pred CchhhHHHHHHHHHHHHHHhhcCCcceEEccCCceeEecccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHh-c-- Confidence 2222222 22333333344444444444 44566888877764432 2233445678999999998877 3 Q ss_pred ccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC---CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 330 QAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA---VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTM 405 (449) Q Consensus 330 ~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~---~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~ 405 (449) |..++.+ -.+.||.. .+.|+++.+..-+-..+..+ ..++.|.|+.|...|.+++++. ++++ T Consensus 281 -~~~sn~e~~~~~f~~~-------~L~P~~~~ie~~l~~~Ll~~~e~~~~~~f~~~~l~~~d~~~~~~~-------~~~~ 345 (395) T protein:vir:96 281 -GDIADNQKNYELLLEG-------PIESLITNIVDGLEYAIFDKSETLEGSFIKVTGLKNYDLFSISSQ-------ADKL 345 (395) T ss_pred -CCCccHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCChhhhcCceeEeecchhccCHHHHHHH-------HHHH Confidence 2222333 34566653 35676666665444444332 3457789999988887766654 4557 Q ss_pred HHcCCccccCHHHHHHHhcCCCCCCCC-----------CCCCCcchhhccccc Q lcl|Aclame:pro 406 LGSGDNPAFSREEIRTAAGYDNDDEEP-----------LGEEDGDEEDKATDS 447 (449) Q Consensus 406 ~~~g~~~~~~~~e~r~~~~~~~~~~~~-----------~~~~~~~ee~~~~~~ 447 (449) +++| ++|++|+|+..+++|.+++. ..++.+.|++.+.++ T Consensus 346 ~~~G---~~T~NE~R~~~gl~pi~~~~gD~~~~~~N~~~~~~~gge~~~~~~~ 395 (395) T protein:vir:96 346 ISSG---FVFIDEVREEIGLPELPDGLGKVLYMTKNYESVLERGGEVDEEVET 395 (395) T ss_pred HhCC---CcCHHHHHHHhCCCCCCCCCCceeeecccceechhccCCCCCCCCC Confidence 7777 89999999999999863321 112223344444444 No 87 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=99.35 E-value=2.7e-12 Score=84.04 Aligned_cols=350 Identities=15% Similarity=0.138 Sum_probs=164.7 Q ss_pred HHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSK 102 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~ 102 (449) |+|.+-..+..+.....++ +.....++. ..|.++..+.++|+..+.++-+-.+.+..+....+......+..+=+ T Consensus 1 Mg~f~~l~~~~~~~~~~~~-~~~~~~~~~----~~~l~~~~v~~~i~~Ia~~ia~~p~~~~~~~~~~~~~l~~ll~~~PN 75 (376) T protein:vir:78 1 MGFFSELFKRNKEIEWMWD-LDFLEDKTT----KVYLKKMALNTCVKHIARTIAKSDFRLKNGETSVRDKLYYKLNIRPN 75 (376) T ss_pred CchhhhhhccCCccccccc-hhhccccch----hhhhhhHHHHHHHHHHHHhhcccceeeccccccccchHHHHHhhccc Confidence 5555444343322211111 111122222 23445778899999999999999988765433222211111111101 Q ss_pred HHHHHHHHHHHHHHHHhccc-cccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccCCceeEEe Q lcl|Aclame:pro 103 QVFTNRLWRSFAEADRRRLV-GRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKY 181 (449) Q Consensus 103 ~l~~~~~~~~~~ea~~~~rl-~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i 181 (449) .. .-+..+.+.+.+..+ +|.+++++.- ++...- ..+.+.....+.+ ..++.+ T Consensus 76 ~~---~t~~~f~~~~~~~lll~Gn~~~~~~r-~~~~~~---------~~~~~~~~~~~~~--------------~~~~~~ 128 (376) T protein:vir:78 76 TD---MSSSSFWEKVIYKLIYDNECLIVLSD-TDDFLI---------ADSYVRKEFAFFP--------------DVFEGV 128 (376) T ss_pred cC---CCHHHHHHHHHHHHhHcCcEEEEEEe-CCCeee---------ccceeecccceee--------------eeeeee Confidence 11 112223333333334 5666555543 332210 0011111000000 011111 Q ss_pred eecccCCCccceEEccceeeeccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhc Q lcl|Aclame:pro 182 TERLPNGSSRRVDIHPDRVFILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYG 261 (449) Q Consensus 182 ~~~~~~~~~~~~~IH~SRli~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~ 261 (449) ... +......+.++.|+||.-...+|.+.+..+.+.......... ....+.+..+.. +. ....+ T Consensus 129 ~~~---~~~~~~~~~~~evih~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~----------~~~~~ 192 (376) T protein:vir:78 129 TVK---DYRYNRNFSMDDVIFLEYGNERLSAFTDGMFEDYGELFGKMI--RAQMRNFQIRGA-VN----------FKMAG 192 (376) T ss_pred eee---cceeeeeeccccEEEeccCCCCchhhhhHHHHHHHHHHHHHH--HHHHhcCCCcee-EE----------EccCC Confidence 100 011123467788888875556666666655443322111100 000011111100 00 00112 Q ss_pred cChHHHHHHHHHHHHHHhcc----cc-ceeecCCCceEEeecccCC-------hHHHHHHHHHHHHhhhcCCceeeeccC Q lcl|Aclame:pro 262 VSIDELQDKFNEVAGEINRG----ND-VLMTTQGATVTPLVTSVAD-------PTATYNVNLQTAAAGVDIPTRILIGNQ 329 (449) Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~----~~-~~l~~~~ed~~~~~~~lsg-------l~d~~~~~~~~iaaas~IP~t~L~Gqs 329 (449) ...++..+++.+.+....++ -. .+.+..+-+|+.++.+... +-+........||.+.|||-.+|-| T Consensus 193 ~~~~e~~~~~~~~~~~~~~g~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVPp~~l~~-- 270 (376) T protein:vir:78 193 VADKDKQTKLQEYIDKVYASFNNNEIAIVPQLEGFNYEEFGTTSVNNSQSFDEVKKLRKEMIDYVASILGIPSSLLHG-- 270 (376) T ss_pred CCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceEEeeccCccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhCC-- Confidence 22344555555555433322 22 2345667789998877643 4455566678899999999987732 Q ss_pred ccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCc--eEEeCCCCCCCHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 330 QAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKK--AVIWDDLNEQTGTEKLTNAKTMGEINQTML 406 (449) Q Consensus 330 ~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~--~~~f~pL~~~sekE~Aei~~~~A~a~~~~~ 406 (449) ..++.+ -...||.. .+.|+.+.+..-+-..+.. +.++ .+.+..|...|.+++ ++++.+++ T Consensus 271 --~~s~~e~~~~~f~~~-------~l~P~~~~ie~~l~~kll~-~~~~~~~~~~~~ll~~d~~~~-------~~~~~~~~ 333 (376) T protein:vir:78 271 --DMADLSNNMKAYMEY-------CIDPLTKKLEDELNAKLFT-FSEFLAGEHIKIIHKKDIIEN-------AEAVDKLV 333 (376) T ss_pred --CCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhCC-cccceecccchhhcccCHHHH-------HHHHHHHH Confidence 222223 23444443 3566666555444333333 2344 455556766666654 66777888 Q ss_pred HcCCccccCHHHHHHHhcCCCCCCCC---------CC-CCCcchhh Q lcl|Aclame:pro 407 GSGDNPAFSREEIRTAAGYDNDDEEP---------LG-EEDGDEED 442 (449) Q Consensus 407 ~~g~~~~~~~~e~r~~~~~~~~~~~~---------~~-~~~~~ee~ 442 (449) ++| ++|++|+|+..+++|..+.. .. -...+|++ T Consensus 334 ~~G---~~t~NE~R~~lg~~p~~~g~~d~~~~~~n~~~~~~~~e~g 376 (376) T protein:vir:78 334 ASG---SFNRNEVRELLGAERVDNPELDKYLITKNYQSADEGGEDG 376 (376) T ss_pred hCC---CcCHHHHHHHhCCCCCCCCCCceeeeccCceehhccccCC Confidence 888 89999999999999864321 10 11122333 No 88 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.35 E-value=2.6e-11 Score=78.64 Aligned_cols=422 Identities=10% Similarity=0.024 Sum_probs=198.8 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHH------------HHHHHHHcCchhHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYE------------NLYSLYRRGGIAHGAV 68 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~------------~l~~~Y~~~~l~r~iV 68 (449) |-+|.-..+.= ..+++-.+.|..+...- +.++.|...| ++...+.. -...+|+.|++++++| T Consensus 3 ~~dr~i~~~sP-~~~~~R~~ar~~~~~y~-aa~~~r~~~~----~~~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av 76 (502) T protein:vir:79 3 ILDDVIGVFSP-GWKAARLRSRAVIQAYE-AVKTTRTHKA----RRENRTADQLSQYGAVSLREQARYLDNNHDLVIGVF 76 (502) T ss_pred hHhhHHhhcCh-HHHHHHHhhHHHHhhcc-ccCcccccCC----CCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHH Confidence 44555433321 12222223344332221 2223332222 22222221 2367899999999999 Q ss_pred hhhHHHHhc-CCcEEecCCChhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhccccccEEEEEEecCCC Q lcl|Aclame:pro 69 EKLVGKCWQ-TNPEIIEGDDADDSEDETSWEKKSKQVFTN-----------RLWRSFAEADRRRLVGRYAGILLHIRDEK 136 (449) Q Consensus 69 d~pa~d~~r-~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~-----------~~~~~~~ea~~~~rl~Gga~i~i~i~d~~ 136 (449) +....-.+= .|+.+.......+.....++.+++++++.. .+..-..-+++.--..|-+.+.+...... T Consensus 77 ~~~~~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~ 156 (502) T protein:vir:79 77 DKLEERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMVSGRIN 156 (502) T ss_pred HHHHHhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEeecccC Confidence 999998885 466654332222222222344444444321 11111122333223456666555543222 Q ss_pred cccccccccCceeeEEEeccccCChhh-----hhccccccccCCceeEEeeecccCCC--ccceEEccceeeeccCC--- Q lcl|Aclame:pro 137 DWNLPATKGRGLQKVSVSWAGSLKVAE-----WDTGINSKTYGQPKLWKYTERLPNGS--SRRVDIHPDRVFILGDY--- 206 (449) Q Consensus 137 ~~~~Pl~~~~~l~~i~v~~~~~i~~~~-----~~~Dp~s~~yg~P~~y~i~~~~~~~~--~~~~~IH~SRli~~~~~--- 206 (449) .++.-+...-. |.+++...|+... +..-..=-.+|+|..|+|....++.. .....|..++|+|+... T Consensus 157 ~~~~g~~~~l~---lq~iepd~l~~~~~~~~~i~~GVe~d~~Gr~~aY~i~~~hPgd~~~~~~~rvpA~~vlH~f~~~r~ 233 (502) T protein:vir:79 157 SLTPSAGVHFW---LEALEPDFIPMTSDESNRLNQGVFVDDWGRPEKYLVYKSRPVSGRQMETKEVDAERMLHLKFVRRL 233 (502) T ss_pred ccCCCcccceE---EEEecchhcCCCCCCCCeeEeeeEECCCCceEEEEEeecCCCCCcccceeEechhheEEeecccCC Confidence 21110110001 2233333332110 00111123679999999986544432 33478999999987543 Q ss_pred -CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccce Q lcl|Aclame:pro 207 -SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVL 285 (449) Q Consensus 207 -~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (449) -..|+|.+-++...+.+++....+ +++-......+..-++....-.......+..... ....+..|.-.. T Consensus 234 gQ~RGis~lapvl~~l~~l~~~~da--el~~a~i~A~~~~fi~~~~~~~~~~~~~~~~~~~-------~~~~l~pG~i~~ 304 (502) T protein:vir:79 234 HQMRGTSLLSGVLIRLSALKEYEDS--ELTAARIAAALGMYIRKGDGQSYEPDGNGSKENE-------RELTIQPGIIYD 304 (502) T ss_pred ccccCCchHHHHHHHHHHHhHHHHH--HHHHHHHhhhheeeeecCCCcccccccCCCCCcc-------ccccccCCcccc Confidence 356999999999999988876543 3332222222211111110000000000100000 011122221111 Q ss_pred eecCCCceEEeecc--cCChHHHHHHHHHHHHhhhcCCceeeeccCccccccc-hhHHHHHHHHHHHHHhh----hHHHH Q lcl|Aclame:pro 286 MTTQGATVTPLVTS--VADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSST-EDQKYFNARCQSRRVDL----SFEIE 358 (449) Q Consensus 286 l~~~~ed~~~~~~~--lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~-eD~~nyyd~I~~~Qe~~----~~p~~ 358 (449) .+..+++++.++.+ -++..+........||+..|||.-.|.|--.+..+|. .-+..+...++..|+.+ ++|+. T Consensus 305 ~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~ 384 (502) T protein:vir:79 305 DLKPGEEIGMVKSDRPNPNLETFRNGQLRAVAAGSRLSFSSTARNYNGTYSAQRQELVESTDGYLILQDWFIGAVTRPMY 384 (502) T ss_pred ccCCCceeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 24568889888764 5689999999999999999999999999755422232 36777888888888744 45555 Q ss_pred H-HHHHHHHHhcCCCCCC------ceEEe--CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCcc--------ccCHHHHHH Q lcl|Aclame:pro 359 D-FCDKLIELKIIDAVAK------KAVIW--DDLNEQTGTEKLTNAKTMGEINQTMLGSGDNP--------AFSREEIRT 421 (449) Q Consensus 359 ~-~l~~l~~~~~~~~~~~------~~~~f--~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~--------~~~~~e~r~ 421 (449) + +|+..+..+....|.. ...+| +..-..+. .|.+++....+++|... -.+++++.+ T Consensus 385 ~~~l~~a~l~G~i~~p~~~~~~~~~~~~W~~p~~~~iDP-------~Ke~~a~~~~i~~Gl~t~~~~~a~~G~D~~~v~~ 457 (502) T protein:vir:79 385 RAWLKQAVASGVIRLPRDLDRSSLYTAVYSGPVMPWIDP-------VKEAEAWKIQIRGGAATESDWVRAGGRNPDDVKR 457 (502) T ss_pred HHHHHHHHHcCCCCCCCCCCchhhcceeeecCCccccCh-------HHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHH Confidence 4 4555556665554431 24444 33333343 34556666777777321 122222211 Q ss_pred ----------HhcCCCCCCC---------CCCCCCcchhhccccc Q lcl|Aclame:pro 422 ----------AAGYDNDDEE---------PLGEEDGDEEDKATDS 447 (449) Q Consensus 422 ----------~~~~~~~~~~---------~~~~~~~~ee~~~~~~ 447 (449) ..|+..+.+. +...++..+.....|. T Consensus 458 q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~e~~~~~~~~e~ 502 (502) T protein:vir:79 458 RRKAEIDENRKLDLVFDTDPASDKGGSSAATKRQEPQHTDDQSEE 502 (502) T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 1233222110 0000000000000111 No 89 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=99.34 E-value=1.5e-11 Score=79.95 Aligned_cols=376 Identities=12% Similarity=-0.008 Sum_probs=172.5 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccC--CcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYG--FPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~--~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) |--.+..-.+...+........ . ....++..+ .+..++ ....++.. .+.++..+.++|+..+++.-+- T Consensus 1 m~m~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~-~~~~~~~~~g~~v~~~----~al~~~~v~~~v~~ia~~ia~l 70 (392) T protein:vir:74 1 MILPILNFINQTNDPPEAGSVQ-S----YFPDGNDAQ-IMESLLGDNNEWVSAR----AALRNSDLFSIILQLSSDLAIV 70 (392) T ss_pred CcchhhhhhhcccCcccccccc-c----ccccCchhh-hhhhccCCCCcccchh----hhhcchHHHHHHHHHHHhhccC Confidence 3333221111000000000000 0 000000000 000000 00112211 2345678899999999998877 Q ss_pred CcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccc Q lcl|Aclame:pro 79 NPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAG 157 (449) Q Consensus 79 ~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~ 157 (449) .+++...... . .+++=....-+..+.+.+.+. .++|.|++++.- +... .+..|.|+... T Consensus 71 p~~~~~~~~~-------~---l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r-~~~G---------~~~~L~~i~~~ 130 (392) T protein:vir:74 71 KINAEKKKNQ-------G---IIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWR-NANG---------ADMKWEYLRPS 130 (392) T ss_pred ceeeccchhh-------h---hhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEE-CCCC---------cEEEEEEEcCc Confidence 7766432110 0 111100000112222333322 467777776643 3221 24455555544 Q ss_pred cCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC----CCcchhHHHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 158 SLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS----EDAIGFLEPAYNAFVSLEKVEGGSGE 233 (449) Q Consensus 158 ~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~----~~G~s~l~~~~~~l~~~~~~~~~~a~ 233 (449) .+++.. |+ +|...+|++.... +.....+.++++.|+||...+ ..|.|.++.+.+.+.....+..... T Consensus 131 ~v~v~~---~~----~~~~~~y~~~~~~-~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~- 201 (392) T protein:vir:74 131 QVNTYY---FE----YENGMYYNITFDD-PKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTI- 201 (392) T ss_pred eeEEEE---cC----CCceEEEEEEecC-CccceeEEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHH- Confidence 444321 11 2334566665322 112234578899999986533 4589999998887755554433333 Q ss_pred HHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeeccc--CChHHHHHHH Q lcl|Aclame:pro 234 SFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSV--ADPTATYNVN 310 (449) Q Consensus 234 l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~l--sgl~d~~~~~ 310 (449) -++++.... ..+++... ....++..+++........+.-+.+++..+.+|+.++.+. +.+-+..... T Consensus 202 ~~f~ng~~p~~il~~~~~----------~~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~ 271 (392) T protein:vir:74 202 SSLNSSLNVPGVLTVKGG----------GLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWT 271 (392) T ss_pred HHHhccCCCceEEEeCCC----------CCchHHHHHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHH Confidence 333333221 11111110 0111222333332222111222345666778899987653 3566777788 Q ss_pred HHHHHhhhcCCceeeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHH Q lcl|Aclame:pro 311 LQTAAAGVDIPTRILIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTE 390 (449) Q Consensus 311 ~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE 390 (449) .++||.+.|||-.+| |-.....+..+..+.||. ..+.|+.+.+..-+-..+. .++.+.+.++...+.++ T Consensus 272 ~~~Ia~~fgVPp~~l-g~~~~~~~~~e~~~~~~~-------~~l~p~~~~ie~~l~~~l~---~~~~~~~~~~~~~d~~~ 340 (392) T protein:vir:74 272 SKQYAKVYGLPDSYI-GGQGDQQSSIQQISGMYA-------SALNRYLRPAISELEYKLS---DHISVNMRPAIDPLGDN 340 (392) T ss_pred HHHHHHHhCCCHHHh-CCCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcc---chhcccchhhhcCCHHH Confidence 899999999997665 432221122233444443 2345555544443333332 24566677777777665 Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCHHHHHHHh---cCCCCCC---CCCCCCCcchhhcccc Q lcl|Aclame:pro 391 KLTNAKTMGEINQTMLGSGDNPAFSREEIRTAA---GYDNDDE---EPLGEEDGDEEDKATD 446 (449) Q Consensus 391 ~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~---~~~~~~~---~~~~~~~~~ee~~~~~ 446 (449) + ++.+..++.+| ++|++|+|+.. ++.+.+. +.++..++.++..... T Consensus 341 ~-------~~~~~~l~~~g---~~t~near~~~~~~g~~pne~r~~enl~~~~~Gd~~~p~p 392 (392) T protein:vir:74 341 Y-------LSTISTATRWG---ALAENQATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) T ss_pred H-------HHHHHHHHhCC---CcCHHHHHHHHHhCCCCccccchhcCCCCCCCCCCCCCCC Confidence 5 44566777777 88999998765 5543211 1222222222222222 No 90 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=99.34 E-value=4.7e-12 Score=82.67 Aligned_cols=367 Identities=13% Similarity=0.012 Sum_probs=178.4 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) |+++++.+.+... .. +.++.+...+. ....+.-...++.+ .+.+++.+.++|++.+.++-.-.+ T Consensus 3 ~f~~~~~~~~~~~-~~-----~~~~~~~~~~~------~~~~~~~~~~v~~~----~~~~~~~v~~~i~~ia~~ia~~p~ 66 (386) T protein:vir:48 3 IFNITNLATESPP-IS-----QGGFFDITDPD------FLSTLNGSEWVSAE----SALRNSDLFSIINQLSNDLATVKL 66 (386) T ss_pred ccccccccccccc-cc-----cccccccccch------hcccccCCceechh----hhhcchHHHHHHHHHHHhhccCce Confidence 5666543222111 00 01111100000 00000001122322 345788899999999999988887 Q ss_pred EEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccccC Q lcl|Aclame:pro 81 EIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSL 159 (449) Q Consensus 81 ~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i 159 (449) ++.... . ...+++-....-+..+.+.+.+. .++|-|++++.- |... .+..|.++....+ T Consensus 67 ~~~~~~--~--------~~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r-~~~g---------~~~~L~~l~~~~v 126 (386) T protein:vir:48 67 TASRKQ--L--------QGIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWR-NENG---------RDMKWEYLRPSQV 126 (386) T ss_pred eeccch--h--------HHHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEE-CCCC---------cEEEEEEecCcee Confidence 764311 0 01111111111122233333333 456766666644 3211 2344555555544 Q ss_pred ChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC----CCcchhHHHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 160 KVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS----EDAIGFLEPAYNAFVSLEKVEGGSGESF 235 (449) Q Consensus 160 ~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~----~~G~s~l~~~~~~l~~~~~~~~~~a~l~ 235 (449) ++.. + ..|.+.+|+|..... ..+..+.+-++.||||.... ..|.|.++.+...+.....+...... + T Consensus 127 ~v~~---~----~~~~~~~y~~~~~~~-~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~-~ 197 (386) T protein:vir:48 127 SFNR---L----DNKDGIYYNITFDDP-RIPPKQHVPQGDVLHFKLLSVDGGLTSVSPLMALSRELNIQKASDKLTLN-S 197 (386) T ss_pred EEEE---c----CCCceEEEEEEecCc-cccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHH-H Confidence 4422 1 124566777753211 11223456677888886443 45889999888766554444333333 2 Q ss_pred HHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc-ceeecCCCceEEeecccC--ChHHHHHHHHH Q lcl|Aclame:pro 236 LKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND-VLMTTQGATVTPLVTSVA--DPTATYNVNLQ 312 (449) Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ed~~~~~~~ls--gl~d~~~~~~~ 312 (449) +++.... ..+....+...++..+++......+.++.+ .++++.+.+|+.++.+.. .+-+......+ T Consensus 198 ~~ng~~~-----------~~ii~~~~~~~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~ 266 (386) T protein:vir:48 198 LKNALNA-----------NGILKIKGGGLLDFKTKLSRSRQAMKQMQGGPLVLDDLEEFTPLEIKSNVSQLLKQADWTTG 266 (386) T ss_pred HhccCCc-----------ceEEEeCCCCCHHHHHHHHHHHHHhhcCCCCceecCCCceEEEcCCChhHHHHHHHHHHHHH Confidence 3332111 111111122233333434333333333333 355666778999887654 45677788899 Q ss_pred HHHhhhcCCceeeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHH Q lcl|Aclame:pro 313 TAAAGVDIPTRILIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKL 392 (449) Q Consensus 313 ~iaaas~IP~t~L~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~A 392 (449) .||++.+||-.+| |-+..+.++.+..++||.. .+.|+.+.+..-+-..++. ++.+.+.++..++...+ T Consensus 267 ~Ia~~fgVPp~~l-g~~~~~~~~e~~~~~~~~~-------~l~P~~~~ie~~l~~~l~~---~~~~~~~~~~~~d~~~~- 334 (386) T protein:vir:48 267 QFAKVYGIPENVV-GGQGDQQSSLEMSLDLYNK-------AVSRYLRPFLSELSQKLSC---DVDADILPAVDPTGSNS- 334 (386) T ss_pred HHHHHhCCCHHHh-CCCCCcccHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcc---hhhcchhhhhccChHHH- Confidence 9999999997665 5322222223345566543 3566666555444444432 34444555555554433 Q ss_pred HHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCC---------CCCcchhhcc Q lcl|Aclame:pro 393 TNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLG---------EEDGDEEDKA 444 (449) Q Consensus 393 ei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~---------~~~~~ee~~~ 444 (449) +..+..++.+| ++|++|+|+..+..+..+...+ ....|....+ T Consensus 335 ------~~~~~~l~~~g---~~t~nE~r~~lg~~~~~~~~~~~~~~~~~~~~~gGd~~~~~ 386 (386) T protein:vir:48 335 ------VSRINSMVKSG---TLAQNQGLYILQQAEILPKELPEGENPNKTTLKGGEINGED 386 (386) T ss_pred ------HHHHHHHHhCC---CcCHHHHHHHhhcCCCCCccchhhcCCCCCccCCCCCCCCC Confidence 34456777877 8999999999876654221111 0011111111 No 91 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=99.34 E-value=2.2e-12 Score=84.49 Aligned_cols=355 Identities=12% Similarity=0.053 Sum_probs=155.5 Q ss_pred HHHHHHHhhcC---ccc--ccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHH Q lcl|Aclame:pro 23 MGLMVPTMGLD---NKR--HSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSW 97 (449) Q Consensus 23 ~~~~~~~~g~~---t~r--~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~ 97 (449) |+|..-..|.= ... ...+..+.+.... ....|..+..+.++|++++.+.-+-.+.+...++.... .+ T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~v~~~v~~Ia~~ia~~p~~~~~~~~~~~~----~~ 72 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQRTLNLTDTVWCSIPSEK----LKELSIKKWAIDSCANKIANTLSCAEVLTYEKGEEVRK----KN 72 (395) T ss_pred CchHHHHHhhhcccccccccccchhhcccccc----chhhhhhhHHHHHHHHHHHHHHhhCceeeccCCccccc----hH Confidence 33222211111 110 1111111111112 22346677889999999999999988887654332211 11 Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccCC Q lcl|Aclame:pro 98 EKKSKQ-VFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQ 175 (449) Q Consensus 98 e~~~~~-l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~ 175 (449) ...++. =....-...|.+.+.+. .|+|-|++++ .++. +--|. + + .... ....++ T Consensus 73 ~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~-~~~~--~~~~~----~-------~----~~~~---~~~~~~--- 128 (395) T protein:vir:40 73 WYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFM-QDEY--IYVAD----S-------F----TKND---KSLYEN--- 128 (395) T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEE-ecCc--eeecC----C-------c----cccc---cccccc--- Confidence 111110 00000012222332222 3467666554 3221 10000 0 0 0000 000010 Q ss_pred ceeEEeeecccCCCccceEEccceeeeccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHH Q lcl|Aclame:pro 176 PKLWKYTERLPNGSSRRVDIHPDRVFILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTN 255 (449) Q Consensus 176 P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~ 255 (449) .++.|.. ++..-...+.++.|+||.-....+.+.+..++......... ........+..+.. +. + T Consensus 129 -~~~~v~~---~~~~~~~~~~~~evih~r~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-l~------~-- 193 (395) T protein:vir:40 129 -TYTEVTL---KDLTLKKEFKESEVLHLTLNNESIKSIIDGFYLLYGDLLTA--AVNKYKKLNSRKII-VK------L-- 193 (395) T ss_pred -eeeeeee---cCceeeeeeccccEEEeecCCCCccccchhHHHHHHHHHHH--HHHHHHhcCCCCce-EE------E-- Confidence 1111110 11111235677888888643334444444444322211111 11111111111110 00 0 Q ss_pred HHhhhccChHHHHHHHHHHHH----HH-hccccceeecCCCceEEeecccCChHHH-----HHHHHHHHHhhhcCCceee Q lcl|Aclame:pro 256 LASLYGVSIDELQDKFNEVAG----EI-NRGNDVLMTTQGATVTPLVTSVADPTAT-----YNVNLQTAAAGVDIPTRIL 325 (449) Q Consensus 256 l~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~l~~~~ed~~~~~~~lsgl~d~-----~~~~~~~iaaas~IP~t~L 325 (449) .......++..+++.+.+. .. .++...++++++-+|+.++.+.....-+ .+.+.++||.+.|||..+| T Consensus 194 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l 271 (395) T protein:vir:40 194 --KAMFGQTPEAEEKLRLMLSERMKKFLAEGDSALPVEDGMEIDELAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLA 271 (395) T ss_pred --ecccCCCHHHHHHHHHHHHHHHHHhhccCCceeecCCCceEEeccCChhhhhHHHHHHHHHHHHHHHHHHhCCCHHHh Confidence 0111122333333333332 22 2222345567778999998876553322 2334568999999999877 Q ss_pred eccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC---C--CceEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 326 IGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV---A--KKAVIWDDLNEQTGTEKLTNAKTMG 399 (449) Q Consensus 326 ~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~---~--~~~~~f~pL~~~sekE~Aei~~~~A 399 (449) | |..++.+ -...||. ..+.|+.+.+..-+-..+.... . .+.|.+.+|...|.+++++ T Consensus 272 -~---~~~sn~e~~~~~f~~-------~~L~P~~~~ie~~l~~kLl~~~~~~~g~~i~fd~~~ll~~d~~~~~~------ 334 (395) T protein:vir:40 272 -K---GDTVGLSEQVNSFLM-------FSINPIAEMFTDEGNRKFYGRDSVLERTYMKLDTTRIKVQDIQEIAS------ 334 (395) T ss_pred -c---CCCcCHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCChhhhcCCceEEEechhhhccCHHHHHH------ Confidence 2 2222223 2344442 3446666666544433333221 1 3556667888888877775 Q ss_pred HHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC------------CC----CCCc-chhhccccc Q lcl|Aclame:pro 400 EINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP------------LG----EEDG-DEEDKATDS 447 (449) Q Consensus 400 ~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~------------~~----~~~~-~ee~~~~~~ 447 (449) ++.+++++| ++|++|+|+..+++|.+.+. .+ ...+ ++++...++ T Consensus 335 -~~~~~~~~G---~~t~NE~R~~~g~~pi~~~~gD~~~~~~n~~~~~~~~~~~kgge~~~~~~~~ 395 (395) T protein:vir:40 335 -SMDVLFHIG---VNTIDDNLRMIGREPVMSPETQERFVTKNYAPLGENEEDLKGGDINENKGDS 395 (395) T ss_pred -HHHHHHhCC---CCCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCCCCCCCCcCCC Confidence 556677777 99999999999999863211 11 0111 112222222 No 92 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=99.33 E-value=1.8e-11 Score=79.54 Aligned_cols=373 Identities=12% Similarity=0.005 Sum_probs=174.3 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccC-CcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYG-FPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTN 79 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~-~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~ 79 (449) ++++++- .+.+...+. ...-+ ..+...+....-.+ ....++.. .+.+++.+.++|++.+.+.-+-. T Consensus 5 ~f~~~~~-~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~----~al~~~~v~~~i~~ia~~ia~lp 71 (392) T protein:vir:10 5 ILNFINQ-TNDPPEVGS---VQSYF-----PDGNDAQIMESLLGDNNEWVSAR----AALRNSDLFSIILQLSSDLAIVK 71 (392) T ss_pred hhhhhhc-ccccccccc---ccccc-----ccCchhhhhhhhcCCCCceechH----HhhccHHHHHHHHHHHHhhccCc Confidence 3333321 100000000 00000 00000000000000 00112221 12356788999999999988877 Q ss_pred cEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEecccc Q lcl|Aclame:pro 80 PEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGS 158 (449) Q Consensus 80 ~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~ 158 (449) +++..... . ..+++=....-+..+.+.+.+. .++|.|++++.- |... .+..|.|+.... T Consensus 72 ~~~~~~~~--~--------~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r-~~~g---------~~~~L~~l~~~~ 131 (392) T protein:vir:10 72 INAEKKKN--Q--------GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWR-NANG---------ADMKWEYLRPSQ 131 (392) T ss_pred eeeccchh--h--------hHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEE-CCCC---------cEEEEEEEcCce Confidence 77643211 0 0010000000112222333322 456777766643 3221 244555555444 Q ss_pred CChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC----CCcchhHHHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 159 LKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS----EDAIGFLEPAYNAFVSLEKVEGGSGES 234 (449) Q Consensus 159 i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~----~~G~s~l~~~~~~l~~~~~~~~~~a~l 234 (449) +++.. | ..|...+|++...... ......++++.|||+...+ ..|.|.++.+...+.....+...... T Consensus 132 v~~~~---~----~~~~~~~y~~~~~~~~-~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~- 202 (392) T protein:vir:10 132 VNTYY---F----EYENGMYYNITFDDPK-IEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTIS- 202 (392) T ss_pred eEEEE---c----CCCceEEEEEEecCcc-cceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHH- Confidence 44321 1 1244567777543221 2224578999999997543 45899999888877554544333332 Q ss_pred HHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeecccC--ChHHHHHHHH Q lcl|Aclame:pro 235 FLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSVA--DPTATYNVNL 311 (449) Q Consensus 235 ~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~ls--gl~d~~~~~~ 311 (449) ++++.... ..+++.. . ....++..+++........+.-+.+++..+.+|+.++.+.. .+-+...... T Consensus 203 ~f~ng~~p~gil~~~~---------~-~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~ 272 (392) T protein:vir:10 203 SLNSSLNVPGVLTVKG---------G-GLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTS 272 (392) T ss_pred HHhccCCCceEEEeCC---------C-CCchHHHHHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHH Confidence 33332221 1111110 0 01122233333322222222223456667788999876543 4567777788 Q ss_pred HHHHhhhcCCceeeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHH Q lcl|Aclame:pro 312 QTAAAGVDIPTRILIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEK 391 (449) Q Consensus 312 ~~iaaas~IP~t~L~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~ 391 (449) ++||.+.|||-.+| |-.....+..+..+.||. ..+.|+.+.+..-+-..+. .++.+...++...+.+++ T Consensus 273 ~~Ia~~fgVpp~~l-g~~~~~~~~~~~~~~f~~-------~~l~P~~~~ie~~l~~~L~---~~~~~d~~~~~~~d~~~~ 341 (392) T protein:vir:10 273 KQYAKVYGLPDSYI-GGQGDQQSSIQQISGMYA-------SALNRYLRPAISELEYKLS---DHISVNMRPAIDPLGDNY 341 (392) T ss_pred HHHHHHhCCCHHHh-CCCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcc---ccccccchhhhccCHHHH Confidence 99999999997666 432211122233444443 2345555555444433333 245666667777776655 Q ss_pred HHHHHHHHHHHHHHHHcCCccccCHHHHHHHh---cCCCCCC---CCCCCCCcchhhcccc Q lcl|Aclame:pro 392 LTNAKTMGEINQTMLGSGDNPAFSREEIRTAA---GYDNDDE---EPLGEEDGDEEDKATD 446 (449) Q Consensus 392 Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~---~~~~~~~---~~~~~~~~~ee~~~~~ 446 (449) + +.+..++++| ++|++|+|+.. |+.|.+- ++++..++.++..... T Consensus 342 ~-------~~~~~l~~~g---~~t~nE~r~~l~~~g~~p~e~r~~e~l~~~~~Gd~~~p~p 392 (392) T protein:vir:10 342 L-------STISTATRWG---ALAENQATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) T ss_pred H-------HHHHHHHhCC---CcCHHHHHHHHHhcCCCccccchhcCCCCCCCCCCCCCCC Confidence 4 4566777777 88889988765 5554221 1233322222222222 No 93 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=99.33 E-value=1.8e-11 Score=79.54 Aligned_cols=373 Identities=12% Similarity=0.005 Sum_probs=174.3 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccC-CcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYG-FPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTN 79 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~-~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~ 79 (449) ++++++- .+.+...+. ...-+ ..+...+....-.+ ....++.. .+.+++.+.++|++.+.+.-+-. T Consensus 5 ~f~~~~~-~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~----~al~~~~v~~~i~~ia~~ia~lp 71 (392) T protein:vir:39 5 ILNFINQ-TNDPPEVGS---VQSYF-----PDGNDAQIMESLLGDNNEWVSAR----AALRNSDLFSIILQLSSDLAIVK 71 (392) T ss_pred hhhhhhc-ccccccccc---ccccc-----ccCchhhhhhhhcCCCCceechH----HhhccHHHHHHHHHHHHhhccCc Confidence 3333321 100000000 00000 00000000000000 00112221 12356788999999999988877 Q ss_pred cEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEecccc Q lcl|Aclame:pro 80 PEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGS 158 (449) Q Consensus 80 ~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~ 158 (449) +++..... . ..+++=....-+..+.+.+.+. .++|.|++++.- |... .+..|.|+.... T Consensus 72 ~~~~~~~~--~--------~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r-~~~g---------~~~~L~~l~~~~ 131 (392) T protein:vir:39 72 INAEKKKN--Q--------GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWR-NANG---------ADMKWEYLRPSQ 131 (392) T ss_pred eeeccchh--h--------hHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEE-CCCC---------cEEEEEEEcCce Confidence 77643211 0 0010000000112222333322 456777766643 3221 244555555444 Q ss_pred CChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC----CCcchhHHHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 159 LKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS----EDAIGFLEPAYNAFVSLEKVEGGSGES 234 (449) Q Consensus 159 i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~----~~G~s~l~~~~~~l~~~~~~~~~~a~l 234 (449) +++.. | ..|...+|++...... ......++++.|||+...+ ..|.|.++.+...+.....+...... T Consensus 132 v~~~~---~----~~~~~~~y~~~~~~~~-~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~- 202 (392) T protein:vir:39 132 VNTYY---F----EYENGMYYNITFDDPK-IEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTIS- 202 (392) T ss_pred eEEEE---c----CCCceEEEEEEecCcc-cceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHH- Confidence 44321 1 1244567777543221 2224578999999997543 45899999888877554544333332 Q ss_pred HHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeecccC--ChHHHHHHHH Q lcl|Aclame:pro 235 FLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSVA--DPTATYNVNL 311 (449) Q Consensus 235 ~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~ls--gl~d~~~~~~ 311 (449) ++++.... ..+++.. . ....++..+++........+.-+.+++..+.+|+.++.+.. .+-+...... T Consensus 203 ~f~ng~~p~gil~~~~---------~-~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~ 272 (392) T protein:vir:39 203 SLNSSLNVPGVLTVKG---------G-GLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTS 272 (392) T ss_pred HHhccCCCceEEEeCC---------C-CCchHHHHHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHH Confidence 33332221 1111110 0 01122233333322222222223456667788999876543 4567777788 Q ss_pred HHHHhhhcCCceeeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHH Q lcl|Aclame:pro 312 QTAAAGVDIPTRILIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEK 391 (449) Q Consensus 312 ~~iaaas~IP~t~L~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~ 391 (449) ++||.+.|||-.+| |-.....+..+..+.||. ..+.|+.+.+..-+-..+. .++.+...++...+.+++ T Consensus 273 ~~Ia~~fgVpp~~l-g~~~~~~~~~~~~~~f~~-------~~l~P~~~~ie~~l~~~L~---~~~~~d~~~~~~~d~~~~ 341 (392) T protein:vir:39 273 KQYAKVYGLPDSYI-GGQGDQQSSIQQISGMYA-------SALNRYLRPAISELEYKLS---DHISVNMRPAIDPLGDNY 341 (392) T ss_pred HHHHHHhCCCHHHh-CCCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcc---ccccccchhhhccCHHHH Confidence 99999999997666 432211122233444443 2345555555444433333 245666667777776655 Q ss_pred HHHHHHHHHHHHHHHHcCCccccCHHHHHHHh---cCCCCCC---CCCCCCCcchhhcccc Q lcl|Aclame:pro 392 LTNAKTMGEINQTMLGSGDNPAFSREEIRTAA---GYDNDDE---EPLGEEDGDEEDKATD 446 (449) Q Consensus 392 Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~---~~~~~~~---~~~~~~~~~ee~~~~~ 446 (449) + +.+..++++| ++|++|+|+.. |+.|.+- ++++..++.++..... T Consensus 342 ~-------~~~~~l~~~g---~~t~nE~r~~l~~~g~~p~e~r~~e~l~~~~~Gd~~~p~p 392 (392) T protein:vir:39 342 L-------STISTATRWG---ALAENQATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) T ss_pred H-------HHHHHHHhCC---CcCHHHHHHHHHhcCCCccccchhcCCCCCCCCCCCCCCC Confidence 4 4566777777 88889988765 5554221 1233322222222222 No 94 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=99.32 E-value=6.5e-12 Score=81.93 Aligned_cols=351 Identities=13% Similarity=0.059 Sum_probs=169.9 Q ss_pred HHHHHHHhhc---------------Ccc--------cccc------------hhccCCc--------ccCCHHHHHHHHH Q lcl|Aclame:pro 23 MGLMVPTMGL---------------DNK--------RHSA------------WCEYGFP--------ELVTYENLYSLYR 59 (449) Q Consensus 23 ~~~~~~~~g~---------------~t~--------r~~~------------~~~~~~~--------~~~~~~~l~~~Y~ 59 (449) |+|-+-.-|+ +++ ++.. ..-.|++ ..++. ..|. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~t~----~~~~ 76 (409) T protein:vir:83 1 MGFWSNLFGIPSIPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWSGYPESWATPSWGSAQD----KLRT 76 (409) T ss_pred CchhhhhcccccCCCcccccccccccCCCCceeeccCCCcchhhhhcccccccccccccccccccCccccch----hhHh Confidence 2222221121 000 0000 0000111 12222 2355 Q ss_pred cCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcc Q lcl|Aclame:pro 60 RGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSK-QVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDW 138 (449) Q Consensus 60 ~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~-~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~ 138 (449) .+..+.++|+++++++-.-.+.+....+..+. ....+. +=....-+..+.+.+.+..+.|++++++...+... T Consensus 77 ~~~~v~acV~~Ia~~iA~lpl~~~~~~~~~~~-----~~~ll~~~PN~~~t~~~f~~~l~~~lllGnay~~~i~r~~~G- 150 (409) T protein:vir:83 77 LIDVAWACIDLNASVLSSMPIYRMRNGRIIDS-----VAWMSNPDPEVYTSWQEFAKQLFWDFQLGEAFVLPMAHGSDG- 150 (409) T ss_pred hhHHHHHHHHHHHHhhccCceEEeeCCccccc-----hhhhcccCCCCCCCHHHHHHHHHHHHhhCCcEEEEEEECCCC- Confidence 67888999999999998888777644322111 111111 00000122334444445555688877655433211 Q ss_pred cccccccCceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccC----CCCCcchhH Q lcl|Aclame:pro 139 NLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD----YSEDAIGFL 214 (449) Q Consensus 139 ~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~----~~~~G~s~l 214 (449) .+..|.|+....+++. .+.| |. ..|+|... ...+.||||.. +.+.|.|-+ T Consensus 151 --------~~~~L~pl~p~~v~v~-~~~~------g~-~~y~~~~~----------~~~~eiiHir~~~~~~~~~G~spi 204 (409) T protein:vir:83 151 --------YPIRFRVVPPWLVNVE-LKKG------AR-REYRIGGL----------NVTDEILHIRYQGNTADAHGHGPL 204 (409) T ss_pred --------cEEEEEEECCcceEEE-EcCC------ce-EEEEEccc----------cCccceEEeCCCCCCCCcccccHH Confidence 1234445444433321 1112 22 34666421 12355666642 335689989 Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc-c-ceeecCCCc Q lcl|Aclame:pro 215 EPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN-D-VLMTTQGAT 292 (449) Q Consensus 215 ~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~~~~ed 292 (449) +.+-..+.....+.. .+..++++..+.= .+....+...++..+++.+.......+. + .+++..+.+ T Consensus 205 ~~~~~~i~~~~a~~~-~~~~~f~nga~p~-----------gil~~~~~ls~e~~~~~~~~~~~~~~~nag~~~il~~g~~ 272 (409) T protein:vir:83 205 ESAAPRQVVIGLLQK-YVQNLAETGGVPL-----------YWLGVERRLSETEAVDLMDRWIESRSKYAGHPALVTGGAT 272 (409) T ss_pred HHHHHHHHHHHHHHH-HHHHHHhcCCCcc-----------eEeecCCCCCHHHHHHHHHHHHHhhCCccCccceecCCcc Confidence 888777654443322 2333344322211 1111112223444444444333222221 1 244444445 Q ss_pred e-EEeecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCccc----cccch-hHHHHHHHHHHHHHhhhHHHHHHHHHH Q lcl|Aclame:pro 293 V-TPLVTSVA--DPTATYNVNLQTAAAGVDIPTRILIGNQQAE----RSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKL 364 (449) Q Consensus 293 ~-~~~~~~ls--gl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg----~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l 364 (449) + +.++.+.. .+-+........||.+.+||- .|+|....+ .+.-| -.+.||. ..+.|+.+.++.- T Consensus 273 ~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVPp-~llg~~~~~~~~tysn~eq~~~~f~~-------~tL~P~~~~ie~~ 344 (409) T protein:vir:83 273 LNQAKSMSAQDLSLMELTQFNEARIAILLGVPP-FLVGLPGATGSLTYSNIEQLFSFHDR-------SSLRPKATAVMAA 344 (409) T ss_pred cccccCCCHHHHHHHHHHHhhHHHHHHHhCCCH-HHccCCCCccccccccHHHHHHHHHH-------HHHHHHHHHHHHH Confidence 4 44555533 334555667889999999995 666743322 22223 3455653 2456666666655 Q ss_pred HHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCCCCCcchh Q lcl|Aclame:pro 365 IELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGEEDGDEE 441 (449) Q Consensus 365 ~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~~~~~~ee 441 (449) +-..+......+.|.+..|...+.++| +++.++++++| ++|++|+|+..+++|.+.. ++.....- T Consensus 345 l~~~Ll~~~~~~~f~~~~llr~d~~~r-------~~~~~~~~~~G---~lT~NE~R~~~glpp~~gg--d~l~~~gv 409 (409) T protein:vir:83 345 LDRWALPSPQHLELNRDDYTRPSLVER-------ATAYKIMIEAG---VMEPNEARAMERLHSEAAA--VRLSGGGV 409 (409) T ss_pred HHHhhCCCCcEEEeehhhhhccCHHHH-------HHHHHHHHhCC---CcCHHHHHHHhCCCCCCCC--cccCCCCC Confidence 544444333445666667777776655 56778888888 9999999999998875421 11111111 No 95 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=99.32 E-value=2e-12 Score=84.75 Aligned_cols=365 Identities=9% Similarity=-0.041 Sum_probs=172.6 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) .++|+..+....... +..+.+... +-....+.-...++.. -+.++..+.++|+..++++-.-.+ T Consensus 3 lf~~~~~~~~~~~~~------~~~~~~~~~------~~~~~~~~~~~~v~~~----~al~~~~V~~~i~~Ia~~ia~l~~ 66 (384) T protein:vir:49 3 IFNITNLATESPPSN------QDSFFDITD------PEFLDALNGSEWVSAE----TALKNSDLFSIISQLSNDLATAKI 66 (384) T ss_pred cccccccCccccccc------chhhccccc------hhhcccccCCceechh----hhhccHHHHHHHHHHHHHHhhCce Confidence 233332111111100 000000000 0000000001122322 245678889999999999998888 Q ss_pred EEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccccC Q lcl|Aclame:pro 81 EIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSL 159 (449) Q Consensus 81 ~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i 159 (449) ++...... .+ +++-....-...|.+.+.+. .++|-|++++.- |... .+..|.|+....+ T Consensus 67 ~~~~~~~~-------~l---~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r-~~~g---------~~~~L~~l~~~~v 126 (384) T protein:vir:49 67 TTSRKQLQ-------GI---VDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWR-NENG---------RDMKWEYLRPSQV 126 (384) T ss_pred eeecchhh-------hh---hhccCCCCCHHHHHHHHHHHhhhcCCeEEEEEE-CCCC---------cEEEEEEEcCcee Confidence 87432110 01 11100001112233333333 456777776654 3221 2345555555554 Q ss_pred ChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 160 KVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESF 235 (449) Q Consensus 160 ~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l~ 235 (449) ++... .+ +...+|++.... ...+..+.++.+.||||... ...|.|.+..+.+.+.....+....... T Consensus 127 ~v~~~------~~-~~~~~y~~~~~~-~~~~~~~~~~~~eVih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~- 197 (384) T protein:vir:49 127 SFNRL------DN-QNGLYYNITFDD-PRIPPKQHVPQGDILHFRLLSVDGGLTSVSPLMALGRELNIQKASDKLTLNA- 197 (384) T ss_pred EEEEc------CC-CceEEEEEEecC-ccccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHH- Confidence 44221 11 234567775432 12234577999999999753 2458999999988876655554444433 Q ss_pred HHHHhh-hhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeecccC--ChHHHHHHHHH Q lcl|Aclame:pro 236 LKNAAR-QLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSVA--DPTATYNVNLQ 312 (449) Q Consensus 236 ~~~~~~-~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~ls--gl~d~~~~~~~ 312 (449) +++... ...+++. +. ...++..+...+......+.-..++++.+.+|+.++.+.. .+-+......+ T Consensus 198 ~~ng~~~~~il~~~---------~~--~~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~ 266 (384) T protein:vir:49 198 LKNALNANGILKIK---------GG--GLLDFKTKQSRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTG 266 (384) T ss_pred HhccCCCceEEEeC---------CC--CChHHHHHHHHHHHhcccCCccceecCCCceEEEccCChhhHHHHHHHHHHHH Confidence 333221 1111111 10 0111222222211111112223456667788999877654 44577788889 Q ss_pred HHHhhhcCCceeeeccCccccccchhHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHhcCC------CC--CCceEEeCCC Q lcl|Aclame:pro 313 TAAAGVDIPTRILIGNQQAERSSTEDQKYFNA-RCQSRRVDLSFEIEDFCDKLIELKIID------AV--AKKAVIWDDL 383 (449) Q Consensus 313 ~iaaas~IP~t~L~Gqs~gg~~s~eD~~nyyd-~I~~~Qe~~~~p~~~~l~~l~~~~~~~------~~--~~~~~~f~pL 383 (449) +||.+.|||..+|-+. .+..++.+..+.+|. .|. ..+.|+.+.+..-+...+.. .+ ..+.+.+..| T Consensus 267 ~Ia~~fgVp~~~lg~~-~~~~~~~~~~~~~~~~~i~----~~l~pi~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l 341 (384) T protein:vir:49 267 QFAKVYGIPESVVGGE-GDKQSSLEMIYNIYFKAVS----RFLRPFVSELSKKLSCEVDADILPAVDPTGSNYIGLINSM 341 (384) T ss_pred HHHHHhCCCHHHhCCC-CCccccHHHHHHHHHHHHH----HHHHHHHHHHHHHhchhhhhhhhhhhhccchHHHHHHHHH Confidence 9999999998766543 222222233333322 221 23455555554433222210 11 2344455566 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCCCCC Q lcl|Aclame:pro 384 NEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGEED 437 (449) Q Consensus 384 ~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~~~~ 437 (449) ...+-++++| +..++.+.| .. ++|+|+..++.|...-...++- T Consensus 342 ~~~~~~t~~e-------~~~~l~~~g---~~-~ne~r~~~~~~p~~gGd~~~~~ 384 (384) T protein:vir:49 342 VKTGTLAQNQ-------GLYVLQQAE---IL-PKDLPEGETDSTLKGGETNEQY 384 (384) T ss_pred hhcCcccHHH-------HHHHHhhCC---CC-ChhHHHHcCCCCCCCCCCCCCC Confidence 6655555444 444566665 44 4899998887775422222222 No 96 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=99.30 E-value=1.1e-11 Score=80.70 Aligned_cols=364 Identities=12% Similarity=0.051 Sum_probs=158.6 Q ss_pred HHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSK 102 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~ 102 (449) |++++...... .......+....++. -....|..+..+.++|+..|+++-.-.+.+....++... ...+...++ T Consensus 1 MGlf~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~I~~ia~~iA~lp~~~~~~~~~~~~--~~~~~~lL~ 74 (395) T protein:vir:98 1 MGILDFFSFKK---SGTLSDDDSGSTTSE-KLTNVVLKEDALYKCVNYLARIISKSTFRLKTPEKLTEN--QKDWLYWIN 74 (395) T ss_pred CcchhhhcCCC---cccccccccchhhhh-hcchhhhhhHHHHHHHHHHHHHHhhCceeEEecCCcccc--cchHHHHHh Confidence 66555432221 111111111222221 123345567788999999999999998887654322211 111222221 Q ss_pred H-HHHHHHHHHHHHHHHhcc-ccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccCCceeEE Q lcl|Aclame:pro 103 Q-VFTNRLWRSFAEADRRRL-VGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWK 180 (449) Q Consensus 103 ~-l~~~~~~~~~~ea~~~~r-l~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~ 180 (449) . =....-...+.+.+.+.+ ++|-|++++.- ++.-+ +.+. +... . ...++. ++. T Consensus 75 ~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~-~~~~~--~~~~------------~~~~--~----~~~~~~----~~~ 129 (395) T protein:vir:98 75 TKANPNQSASQFWVEVIQKLLVDGETLIFVIP-GKGIY--VADS------------FTQD--K----KISGSQ----FKV 129 (395) T ss_pred hcCCCCCCHHHHHHHHHHHHhhcCceEEEEEe-CCcee--cCCc------------cccc--c----cccCcc----cce Confidence 0 000001122233333333 46767665543 32110 0000 0000 0 000110 111 Q ss_pred eeecccCCCccceEEccceeeeccCCCCC----cchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHH Q lcl|Aclame:pro 181 YTERLPNGSSRRVDIHPDRVFILGDYSED----AIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNL 256 (449) Q Consensus 181 i~~~~~~~~~~~~~IH~SRli~~~~~~~~----G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l 256 (449) +.. .+......+-++-|+||...... +.+.++..-..+.... +........+............... T Consensus 130 ~~~---~~~~~~~~~~~~evih~k~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (395) T protein:vir:98 130 SRV---QGQTYEKTFTFDQVIYLKNDNSDLMSKVESLWEEYGELLGHVI------NNQKIANQIRFTMIPPKDKVRERAQ 200 (395) T ss_pred eee---cCceeeeEecCccEEEecCCCCCccccccchhhhHHHHHHHHH------HHHHHHHHHHHhhcccccccccccc Confidence 110 00001123445567777543322 2223232211111110 1011111111110000000000000 Q ss_pred HhhhccC-hHHHHHHHHHHHHHHhcccccee-ecCCCceEEeecccC--------ChHHHHHHHHHHHHhhhcCCceeee Q lcl|Aclame:pro 257 ASLYGVS-IDELQDKFNEVAGEINRGNDVLM-TTQGATVTPLVTSVA--------DPTATYNVNLQTAAAGVDIPTRILI 326 (449) Q Consensus 257 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l-~~~~ed~~~~~~~ls--------gl~d~~~~~~~~iaaas~IP~t~L~ 326 (449) ....... .+...+.+.......+.+-..++ +..+-+|+.++.+.. .+-++.....++||.+-|||..+| T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~~l- 279 (395) T protein:vir:98 201 ENSDGGRQSKSDKDFFKRTVEKIRTESVVGIPVTANTNYEEYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPISLL- 279 (395) T ss_pred ccCCcHHHHHHHHHHHHHHHhhhhcCCcceeecCCCceeEecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHHHh- Confidence 0000111 11222223333334333333333 445568888765432 334455566778999999998877 Q ss_pred ccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC---CCCceEEeCCCCCCCHHHHHHHHHHHHHHH Q lcl|Aclame:pro 327 GNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA---VAKKAVIWDDLNEQTGTEKLTNAKTMGEIN 402 (449) Q Consensus 327 Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~---~~~~~~~f~pL~~~sekE~Aei~~~~A~a~ 402 (449) | |..++.+ -...||. ..+.|+...++.-+-..+..+ ..++.|+|+.|...+.++++ +++ T Consensus 280 ~---~~~sn~e~~~~~f~~-------~tl~P~~~~ie~~l~~kll~~~~~~~g~~f~~~~l~~~d~~~~~-------~~~ 342 (395) T protein:vir:98 280 H---GDIADNQKNYELLLE-------GPIESLITNIVDGLEYAIFDKSETLQGSFIKVTGLKNYDLFSIS-------NQA 342 (395) T ss_pred c---CCcccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCChhhhcCcceeeehhhhccCHHHHH-------HHH Confidence 3 2233334 3445554 345666666554443333322 34578899999888877654 566 Q ss_pred HHHHHcCCccccCHHHHHHHhcCCCCCCCC-----------CCCCCcchhhccccc Q lcl|Aclame:pro 403 QTMLGSGDNPAFSREEIRTAAGYDNDDEEP-----------LGEEDGDEEDKATDS 447 (449) Q Consensus 403 ~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~-----------~~~~~~~ee~~~~~~ 447 (449) .++++.| ++|++|+|+..+++|..++. ..++.+.|.+.+.++ T Consensus 343 ~~~~~~G---~~T~NE~R~~~g~~Pi~~~~gD~~~~~~n~~~~~~~gge~~~~~~~ 395 (395) T protein:vir:98 343 DKLISSG---FVFIDEVREEIGLPELPDGLGKVLYMTKNYESVLERGGEVDEEVET 395 (395) T ss_pred HHHHhCC---CcCHHHHHHHhCCCCCCCCCCceeeecccceecccccCCCCCCCCC Confidence 6777887 89999999999999864321 112233444444444 No 97 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.26 E-value=9.9e-11 Score=75.44 Aligned_cols=418 Identities=11% Similarity=0.024 Sum_probs=195.9 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCH------------HHHHHHHHcCchhHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTY------------ENLYSLYRRGGIAHGAV 68 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~------------~~l~~~Y~~~~l~r~iV 68 (449) +.+|+-..+.= ..+++=.+.|..+..-- +.++.|... +++...+. .-...+|+.|++++++| T Consensus 3 ~iDr~i~~~sP-~~a~~R~~ar~~~~~y~-aa~~~r~~~----~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av 76 (548) T protein:vir:95 3 LIDRLLEPLAP-ELVARRLAAREAIQAYE-AARPGRTHK----AKRQPLGADTSLQKSAVSMREQCRKLDEDHDLVTGLL 76 (548) T ss_pred hHHhHhhhcch-HHHHHHHHhHHHhcccc-ccCcccccc----ccCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHH Confidence 55666654421 11122122233222111 112222111 11111222 23467899999999999 Q ss_pred hhhHHHHhc-CCcEEecC----CChhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccccccEEEEEEecCCC Q lcl|Aclame:pro 69 EKLVGKCWQ-TNPEIIEG----DDADDSEDETSWEKKSKQVFT-------NRLWRSFAEADRRRLVGRYAGILLHIRDEK 136 (449) Q Consensus 69 d~pa~d~~r-~~~~i~~~----~~~~~~~~~~~~e~~~~~l~~-------~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~ 136 (449) +......+= .|+.|... +.....+....+|+.++..-. ..+..-...+.+.-...|-+.+.+..+... T Consensus 77 ~~~~~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~~~~~~~~ 156 (548) T protein:vir:95 77 DRLEERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQKLMGRVP 156 (548) T ss_pred HHHHHhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEEeeecccc Confidence 999988873 45555332 111222223344444432211 012222223444334456665555443211 Q ss_pred c----ccccccccCceeeEEEeccccCCh--h---h-hhccccccccCCceeEEeeecccCC------CccceEEcccee Q lcl|Aclame:pro 137 D----WNLPATKGRGLQKVSVSWAGSLKV--A---E-WDTGINSKTYGQPKLWKYTERLPNG------SSRRVDIHPDRV 200 (449) Q Consensus 137 ~----~~~Pl~~~~~l~~i~v~~~~~i~~--~---~-~~~Dp~s~~yg~P~~y~i~~~~~~~------~~~~~~IH~SRl 200 (449) + ...|+. |.+++...|.. + . +..-..--.+|+|..|+|...-++. ....+.|-.++| T Consensus 157 ~~~~g~~~~~~-------lqliepd~l~~~~~~~~~~i~~GIE~D~~Grp~aY~i~~~hPgd~~~~~~~~~~~rvpA~~V 229 (548) T protein:vir:95 157 NYTFATSVPFA-------LELLEPDYLPFSYNNLSKGIVQGIERDTWRRKRAYHLLKDHPGNLQTLGGSLAVKRVEAERI 229 (548) T ss_pred cccCCcccceE-------EEEechhhcCCCCCCCCCceeeeeEECCCCceEEEEEeecCCCcccccccccceeeechhHh Confidence 1 111211 22222222211 0 0 1011122367999999998654432 234567888888 Q ss_pred eeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhh-ccChHHHHHHHHHHH Q lcl|Aclame:pro 201 FILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLY-GVSIDELQDKFNEVA 275 (449) Q Consensus 201 i~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 275 (449) +|+... -..|+|.+-++...+.+++....+ +++-+.....+..-++. ...... ....+... ... T Consensus 230 lHif~~~r~gQ~RGvs~lapvl~~l~~l~~y~da--el~~aki~A~~a~fi~~-----~~~~~~~~~~~~~~~----~~~ 298 (548) T protein:vir:95 230 IHIAYRKRIGQNRGVPMLHAVLIRLADLKDYEES--ERVAARISAALAMYIKK-----GNPDSYTVEPGKDRK----NRT 298 (548) T ss_pred eecccccCCccccCcchHHHHHHHHHHHhHHHHH--HHHHHHHhhhheeeeec-----CCCccccCCCCcccc----ccc Confidence 887543 356999999999999888876543 33322211111111111 011100 00000000 001 Q ss_pred HHHhccccceeecCCCceEEeecc--cCChHHHHHHHHHHHHhhhcCCceeeeccCccccccc-hhHHHHHHHHHHHHHh Q lcl|Aclame:pro 276 GEINRGNDVLMTTQGATVTPLVTS--VADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSST-EDQKYFNARCQSRRVD 352 (449) Q Consensus 276 ~~~~~~~~~~l~~~~ed~~~~~~~--lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~-eD~~nyyd~I~~~Qe~ 352 (449) ..+..|.-.-.+..+++++.++.+ -++..+........||+..|||.-.|.|--.+..+|. ..+..+...++..|.. T Consensus 299 ~~~~pG~iv~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~IAaglGipYe~ltgD~s~nYSS~R~~l~e~~r~~~~~q~~ 378 (548) T protein:vir:95 299 IPIAPGMVFDDLEPGEDVGMIESNRPNPFLEGFRNGQLRMIGAGTRSTYSSVSRAYDGTYSAQRQELVEGWLGYDLLQHE 378 (548) T ss_pred ccccCCccccccCCCceeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH Confidence 112222111124568899888765 4689999999999999999999999999754422333 3667777777777765 Q ss_pred h----hHHHHH-HHHHHHHHhcCCCCCC------ceEEeCC--CCCCCHHHHHHHHHHHHHHHHHHHHcCCcc------- Q lcl|Aclame:pro 353 L----SFEIED-FCDKLIELKIIDAVAK------KAVIWDD--LNEQTGTEKLTNAKTMGEINQTMLGSGDNP------- 412 (449) Q Consensus 353 ~----~~p~~~-~l~~l~~~~~~~~~~~------~~~~f~p--L~~~sekE~Aei~~~~A~a~~~~~~~g~~~------- 412 (449) + ++|+.+ +|+..+..+....|.. +..+|-+ .-..+. .|.+++....+++|... T Consensus 379 ~i~~~~~Pi~~~wle~a~l~G~i~lP~~~~~~~~~~~~W~~P~~~~iDP-------~Kea~A~~~~i~~Gl~T~~~~~a~ 451 (548) T protein:vir:95 379 FIDYWCRPVYRSWLQMYLLARKERLPADVDHRTLYAAVYQGPVMPWINP-------MHEANAWELLVKAGFADEAEVARA 451 (548) T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCCCCCCCchhheeeeeecCCccccCh-------HHHHHHHHHHHHcCCCCHHHHHHH Confidence 4 456554 4455555555554432 3455522 222333 35566677777777321 Q ss_pred -ccCHHHHH----------HHhcCCCCCCCCCCC-----CCcch-hhcccccCC Q lcl|Aclame:pro 413 -AFSREEIR----------TAAGYDNDDEEPLGE-----EDGDE-EDKATDSAA 449 (449) Q Consensus 413 -~~~~~e~r----------~~~~~~~~~~~~~~~-----~~~~e-e~~~~~~~a 449 (449) -.+.+|+. +..++..+.+..... ...++ ......... T Consensus 452 ~G~D~~ev~~q~a~E~~~~~~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (548) T protein:vir:95 452 RGRDPRELKKSRETEIKANRAAGLVFSSDAYHQLVKSGMDPVEAVQKVYLGVGK 505 (548) T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccCCCCchhhhcccccc Confidence 12222221 112333222111000 00000 001111000 No 98 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=99.25 E-value=2.1e-11 Score=79.08 Aligned_cols=407 Identities=13% Similarity=0.088 Sum_probs=164.8 Q ss_pred Cchh-----hHHHHH-hhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHH--HHcCchhHHHHhhhH Q lcl|Aclame:pro 1 MTDK-----LTLAVN-HALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSL--YRRGGIAHGAVEKLV 72 (449) Q Consensus 1 ~~~~-----~~~~v~-~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~--Y~~~~l~r~iVd~pa 72 (449) |+.. |..-.+ +.....+. .....+..+ ..+-.. .++.. ..++... .....++++|||.++ T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~-~~l~~Yy~g------~~~i~~----~~~~~-~~~~~~~~~~~~~n~~~~ivd~~~ 68 (456) T protein:vir:79 1 MTASTPAEWLPVLTKRIDDGMSRV-RLLARYSNG------DAPLPE----LTRNT-SAAWRSFQREARTNWGLMVRDSVA 68 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhc------cCChhh----cCccc-ChhhchhhhhhhcchHHHHHHHHH Confidence 3321 111111 11111111 111112111 101000 01111 1122221 223457799999999 Q ss_pred HHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccC----- Q lcl|Aclame:pro 73 GKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGR----- 146 (449) Q Consensus 73 ~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~----- 146 (449) .-++-+|+++...++.+..+. +.+.+++ .++-....++.+.+..||.|++++..+ +|...-..+++.. T Consensus 69 ~~l~~~g~~~~~~~d~~~~~~---~~~~~~~---n~~d~~~~~~~~~a~~~G~a~~~~~~~edg~~~i~~~~p~~~~~i~ 142 (456) T protein:vir:79 69 DRIIPNGITVGGSADSDLALR---ARRIWRD---NRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSV 142 (456) T ss_pred hhhccCCeecCCCCCccHHHH---HHHHHHh---cChhHHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEeccceeEEEE Confidence 999999998654443322221 2122221 134455667777888899998888875 3333222222221 Q ss_pred ------ceeeEEEecccc----CChhhhhccccccccCCceeEEeeec----ccCCCccce---EEcc-ceeeecc-CCC Q lcl|Aclame:pro 147 ------GLQKVSVSWAGS----LKVAEWDTGINSKTYGQPKLWKYTER----LPNGSSRRV---DIHP-DRVFILG-DYS 207 (449) Q Consensus 147 ------~l~~i~v~~~~~----i~~~~~~~Dp~s~~yg~P~~y~i~~~----~~~~~~~~~---~IH~-SRli~~~-~~~ 207 (449) .+.....++... .....+ .++....|..+ .|..... ...+.+..+ .+|| --++.+. -.. T Consensus 143 d~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N 220 (456) T protein:vir:79 143 DPLQPWRIRSAMRWWRDLDAESDFAIVW-SGDGWQKFARP-CFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN 220 (456) T ss_pred cCCCCCceEEEEEEEEecCCceeEEEEE-cCCceEEEEEE-EEeeccccceeeeccCCceeecccccCCCCceeEEEecC Confidence 121111112100 000000 01110111000 0000000 000011111 1222 1111111 123 Q ss_pred CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccce-e Q lcl|Aclame:pro 208 EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVL-M 286 (449) Q Consensus 208 ~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l 286 (449) ..|.|.++++..-+..++++........-..+...+.+.-. .. ........+ .... ....+....+.+ . T Consensus 221 ~~~~gd~e~v~~liD~~~~~~s~~~~~~~~~a~~~~~~~G~---~~-~~~~~d~~g--~~i~----~~~~~~~~~~~~~~ 290 (456) T protein:vir:79 221 PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSS---EH-RLPKVDENG--NAID----YASIFEAAPGALWE 290 (456) T ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcC---Cc-ccccccccc--cccc----hhhhhhhhcccccc Confidence 46888899887766666665433221111111111111100 00 000000000 0000 111122233322 2 Q ss_pred ecCCCceEEe-ecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh----HHHHHHHHHHHHHhhhHHHHHHH Q lcl|Aclame:pro 287 TTQGATVTPL-VTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED----QKYFNARCQSRRVDLSFEIEDFC 361 (449) Q Consensus 287 ~~~~ed~~~~-~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD----~~nyyd~I~~~Qe~~~~p~~~~l 361 (449) .+.+.++.++ .+++.+..+.+.....++++.+++|...|-|.+. +.|++= ....-..++.+|..+.+.+.+++ T Consensus 291 ~~~~~~~~q~~~~~~~~~~~~l~~~i~~i~~~t~~p~~~~~~~~~--N~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~ 368 (456) T protein:vir:79 291 LPPGVDIWESQTNDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA--NQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAIL 368 (456) T ss_pred CCCCcceeeecccChHHHHHHHHHHHHHHHhhcCCChhHhccccc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3344455443 5678889999999999999999999988877542 223322 33445555555554545455544 Q ss_pred HHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC-CCCCCcch Q lcl|Aclame:pro 362 DKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP-LGEEDGDE 440 (449) Q Consensus 362 ~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~-~~~~~~~e 440 (449) ..++.........++.+.|.|...+|..+.|+...+ ++++| +.+.+-++...++.+.+-+- ..+...++ T Consensus 369 ~l~~~~~g~~~~~~i~v~w~~~~~~s~~~~ada~~k-------l~~~G---~~~~~~~~~~lg~~~~~i~~~e~~r~~~e 438 (456) T protein:vir:79 369 VKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASL-------AKAAG---ESWASIRRNILNYNADQIKQDDLDRAREQ 438 (456) T ss_pred HHHHHhcCCCccccceEEeCCCCCcCHHHHHHHHHH-------HHhcC---CChHHHHHhcCCCCHHHHHHHHHHHHHHH Confidence 443333222233478999999999998877655544 44444 33333333333333221000 00000000 Q ss_pred h--------hcccccCC Q lcl|Aclame:pro 441 E--------DKATDSAA 449 (449) Q Consensus 441 e--------~~~~~~~a 449 (449) . ....+.+| T Consensus 439 ~~~~~~~~~~~~~~~~~ 455 (456) T protein:vir:79 439 ITLFAGNPVQRPQEDGS 455 (456) T ss_pred HHHHhhhHhhcCCCCCC Confidence 0 00001111 No 99 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=99.25 E-value=8.5e-12 Score=81.27 Aligned_cols=367 Identities=12% Similarity=0.086 Sum_probs=161.0 Q ss_pred HHHHHHHhhcCccccc-chhccCC---cccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHS-AWCEYGF---PELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWE 98 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~-~~~~~~~---~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e 98 (449) |++.+.-.......+. ....+.. ...++.....++ ..++.++.+|++.|+++-.-.+.+....+.........+. T Consensus 1 Mg~~~~f~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~~I~~ia~~iA~~p~~~~~~~~~g~~~~~~~~~ 79 (403) T protein:vir:80 1 MGLFNFFRRKTRSEPTNAISWFLTQEAYDTLAIPGYTRL-SDNPEVRMAVHKIAELISSMTIHLMQNTDNGDIRIKNELS 79 (403) T ss_pred Ccccccccccccccccchhhhhcccccccccccchhhhh-hhhHHHHHHHHHHHHhhhhCceEEEEecCCceeecCChHH Confidence 4433321111100000 1111100 112222222333 2356788999999999988888775332221111111122 Q ss_pred HHHH-HHHHHHHHHHHHHHHHhcc-cc--ccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccC Q lcl|Aclame:pro 99 KKSK-QVFTNRLWRSFAEADRRRL-VG--RYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYG 174 (449) Q Consensus 99 ~~~~-~l~~~~~~~~~~ea~~~~r-l~--Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg 174 (449) ..++ +=....-+..+.+.+-+.. |. |.|++++.- ++.. .+..|.|+....+++. .+.. | T Consensus 80 ~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~-~~~g---------~~~~L~~l~p~~v~~~---~~~~----g 142 (403) T protein:vir:80 80 RKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKY-TTSG---------LIDELIPLAPSKVSFV---DTDT----G 142 (403) T ss_pred HHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEE-cCCC---------cEEEEEEEcCCeeEEE---EcCC----c Confidence 2221 0000011123334433333 33 445555432 3211 1333444444333321 1111 1 Q ss_pred CceeEEeeecccCCCccceEEccceeeeccC-----CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhh-hhhhhhh Q lcl|Aclame:pro 175 QPKLWKYTERLPNGSSRRVDIHPDRVFILGD-----YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAAR-QLNVNFE 248 (449) Q Consensus 175 ~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~-----~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~-~l~~~~~ 248 (449) ...+|+. ..+-++-|+||.- ..+.|.|.++.+.+.+.....+... ...++++... ...+++. T Consensus 143 ~~~~y~~-----------~~~~~~eiih~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~-~~~~~~ng~~p~~il~~~ 210 (403) T protein:vir:80 143 YQIWYQG-----------KAYNYDEVLHFIVNPDPEKPYMGRGYRVVLKDIVNNLKQATTT-KKSFMSGKYMPSLIVKVD 210 (403) T ss_pred eEEEEee-----------cccchhhEEEEeccCCCcCccccccHHHHHHHHHHHHHHHHHH-HHHHHhccCCcceEEEeC Confidence 1222321 2344556666642 2245888888877766544433222 2223333221 1111111 Q ss_pred hhhhHHHHHhhhccChHHHHHHHHHHH-HHHhccccceeecCCCceEE---eecccCChHHHHHHHHHHHHhhhcCCcee Q lcl|Aclame:pro 249 KEIDFTNLASLYGVSIDELQDKFNEVA-GEINRGNDVLMTTQGATVTP---LVTSVADPTATYNVNLQTAAAGVDIPTRI 324 (449) Q Consensus 249 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~ed~~~---~~~~lsgl~d~~~~~~~~iaaas~IP~t~ 324 (449) ... .....++..+++.... ...+.+...++-....++++ ++..-+.+-+.......+||.+.+||..+ T Consensus 211 ~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~d~q~~e~~~~~~~~Ia~~fgVPp~~ 282 (403) T protein:vir:80 211 AAT--------AELSSEEGRNAVFKKYLEASEAGQPWIIPAELLDVEQVKPLSLKDLAIHETVELDKRTVAGIFGVPAFL 282 (403) T ss_pred CCC--------ChHHHHHHHHHHHHHHhhhhhcCCeeeecccccccceeccCCHHHHHHHHHHHHhHHHHHHHhCCCHHH Confidence 100 0111122222222222 22233333333233334443 33222345567777888999999999755 Q ss_pred eeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEe--CCCCCCCHHHHHHHHHHHHHHH Q lcl|Aclame:pro 325 LIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIW--DDLNEQTGTEKLTNAKTMGEIN 402 (449) Q Consensus 325 L~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f--~pL~~~sekE~Aei~~~~A~a~ 402 (449) | |... .+.+-..+||.. .+.|+.+.+..-+-..+.. +.++.|+| ..|...|.++++ +++ T Consensus 283 l-g~~~---~~~~~~~~f~~~-------~l~P~~~~ie~~l~~kll~-~~~~~~~f~~~~ll~~d~~~~~-------~~~ 343 (403) T protein:vir:80 283 L-GVGK---YDKDEYNNFINS-------TILPIAKGIEQELTRKLLI-SPDLYFKFNPRSLYAYDLKELA-------EVG 343 (403) T ss_pred c-CCCC---ccHHHHHHHHHH-------HHHHHHHHHHHHHHHhccC-CCCcEEEeechhhhccCHHHHH-------HHH Confidence 5 4311 111234566643 4678777777655545443 34566666 467777766665 456 Q ss_pred HHHHHcCCccccCHHHHHHHhcCCCCCCC----------CCCCCCcchhhcccccCC Q lcl|Aclame:pro 403 QTMLGSGDNPAFSREEIRTAAGYDNDDEE----------PLGEEDGDEEDKATDSAA 449 (449) Q Consensus 403 ~~~~~~g~~~~~~~~e~r~~~~~~~~~~~----------~~~~~~~~ee~~~~~~~a 449 (449) .+++++| ++|++|+|+..+++|...- +++...+....+..|... T Consensus 344 ~~~~~~G---i~t~NE~R~~~gl~p~~ggd~~~~~~n~~pl~~~~~~~~~k~ge~~~ 397 (403) T protein:vir:80 344 SNMYVRG---LMEGNEVRDWLGLSPKEGLSELVILENYIPLDKIGDQNKLKGGEKGG 397 (403) T ss_pred HHHHhCC---CcCHHHHHHHhCCCCCCCCCeEeecccccchhhccchhhccCCCCCC Confidence 6778887 9999999999999886321 111000000011111111 No 100 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=99.24 E-value=1.1e-11 Score=80.77 Aligned_cols=406 Identities=12% Similarity=0.063 Sum_probs=167.0 Q ss_pred Cch--------hhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHH--HcCchhHHHHhh Q lcl|Aclame:pro 1 MTD--------KLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLY--RRGGIAHGAVEK 70 (449) Q Consensus 1 ~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y--~~~~l~r~iVd~ 70 (449) |+. +|. -.+.....+.. ....+..+. +..- ..++... .++...+ ..+.++++|||. T Consensus 1 ~~~~t~~~~~~~l~--~~~~~~~~r~~-~l~~Yy~g~-------~~i~---~~~~~~~-~~~~~~~~k~~~n~~~~ivd~ 66 (456) T protein:vir:10 1 MTASTPAEWLPVLT--KRIDDGMSRVR-LLARYSNGD-------APLP---ELTRNTS-AAWRSFQREARTNWGLMVRDS 66 (456) T ss_pred CCCCCHHHHHHHHH--HHHHHHHHHHH-HHHHHHhcC-------CCch---hcCcccC-hhhhhhhhhhhcchHHHHHHH Confidence 442 221 11111111111 111222110 0000 0111111 2233322 235577999999 Q ss_pred hHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccC--- Q lcl|Aclame:pro 71 LVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGR--- 146 (449) Q Consensus 71 pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~--- 146 (449) +++-+.-+|+++...++.+..+ .+.+.+++ .++-....++.+.+..||.|++++..++ |...-..+++.. T Consensus 67 ~~~~l~~~~~~~~~~~d~~~~~---~~~~i~~~---N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~ 140 (456) T protein:vir:10 67 VADRIIPNGITVGGSADSDLAL---RARRIWRD---NRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVV 140 (456) T ss_pred HHhhhccCCeecCCCCCcchHH---HHHHHHHh---cChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEE Confidence 9999999999875443322221 12222221 2344456667777788999988887743 332222222221 Q ss_pred --------ceeeEEEeccccC-Ch--hhhhccccccccCCceeEEee-ec--ccCCCcc----ceEEccceeeeccC-CC Q lcl|Aclame:pro 147 --------GLQKVSVSWAGSL-KV--AEWDTGINSKTYGQPKLWKYT-ER--LPNGSSR----RVDIHPDRVFILGD-YS 207 (449) Q Consensus 147 --------~l~~i~v~~~~~i-~~--~~~~~Dp~s~~yg~P~~y~i~-~~--~~~~~~~----~~~IH~SRli~~~~-~~ 207 (449) .+.....++...- .+ .....+.....|+.+...... .. .....+. ...-|...++.+.- .. T Consensus 141 i~d~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N 220 (456) T protein:vir:10 141 SVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN 220 (456) T ss_pred EEcCCCCcceEEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecC Confidence 1111111121000 00 000011111112221110000 00 0000010 11123222222211 23 Q ss_pred CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccce-e Q lcl|Aclame:pro 208 EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVL-M 286 (449) Q Consensus 208 ~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l 286 (449) .+|.|.++++...+..++++.........-.+..++.+.-. +. ........+ .... ....+....+.+ . T Consensus 221 ~~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~---~~-~~~~~d~~g-----~~~~-~~~~~~~~~~~~~~ 290 (456) T protein:vir:10 221 PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKST---EH-GLPNVDENG-----NAID-YASIFEAAPGALWE 290 (456) T ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhcc---Cc-ccccccccc-----cccc-hhhhhhhhcccccc Confidence 46889999988777777665433221111111111111000 00 000000000 0000 011122233322 2 Q ss_pred ecCCCceEEe-ecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh----HHHHHHHHHHHHHhhhHHHHHHH Q lcl|Aclame:pro 287 TTQGATVTPL-VTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED----QKYFNARCQSRRVDLSFEIEDFC 361 (449) Q Consensus 287 ~~~~ed~~~~-~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD----~~nyyd~I~~~Qe~~~~p~~~~l 361 (449) .+++.++.++ .+++.+..+.+.....++++.+++|...|-|.+ ++.|++= ....-..++.+|+.+.+.+.+++ T Consensus 291 ~~~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~--~N~Sg~Ai~~~~~~l~~k~~~~~~~f~~~l~~~~ 368 (456) T protein:vir:10 291 LPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS--ANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAIL 368 (456) T ss_pred CCCCcceEEecccChhHHHHHHHHHHHHHHhccCCChHHhcccc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3445565554 445778899999999999999999988776654 2223322 23444555555555555555554 Q ss_pred HHHHHHhcCCC-CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC-CCCCCcc Q lcl|Aclame:pro 362 DKLIELKIIDA-VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP-LGEEDGD 439 (449) Q Consensus 362 ~~l~~~~~~~~-~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~-~~~~~~~ 439 (449) ..++.. .+.. ..++.+.|.|....|..|.|+ ++.++.++| +++.+-+++..++.+..-+- ..+...+ T Consensus 369 rl~~~~-~g~~~~~~~~v~w~~~~~~~~~~~ad-------a~~kl~~~g---i~~~~~~~~~lg~~~~~i~~~e~er~~~ 437 (456) T protein:vir:10 369 VKALQI-EGESVEDTVDVSFESPDRVTLGEKYS-------AASLAKAAG---ESWASIRRNILNYNADQIKQDDLDRARE 437 (456) T ss_pred HHHHHh-cCCCcccceeEEecCCCCcCHHHHHH-------HHHHHHHcC---CChHHHHHhhCCCCHHHHHHHHHHHHHH Confidence 433332 3332 347899999999999887655 444555555 33334344444433221000 0000000 Q ss_pred hhhcccccCC Q lcl|Aclame:pro 440 EEDKATDSAA 449 (449) Q Consensus 440 ee~~~~~~~a 449 (449) +....+..++ T Consensus 438 e~~~~~~~~~ 447 (456) T protein:vir:10 438 QITLFAGNPV 447 (456) T ss_pred HHHHHhhhhh Confidence 0000000000 No 101 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=99.24 E-value=1.1e-11 Score=80.77 Aligned_cols=406 Identities=12% Similarity=0.063 Sum_probs=167.0 Q ss_pred Cch--------hhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHH--HcCchhHHHHhh Q lcl|Aclame:pro 1 MTD--------KLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLY--RRGGIAHGAVEK 70 (449) Q Consensus 1 ~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y--~~~~l~r~iVd~ 70 (449) |+. +|. -.+.....+.. ....+..+. +..- ..++... .++...+ ..+.++++|||. T Consensus 1 ~~~~t~~~~~~~l~--~~~~~~~~r~~-~l~~Yy~g~-------~~i~---~~~~~~~-~~~~~~~~k~~~n~~~~ivd~ 66 (456) T protein:vir:10 1 MTASTPAEWLPVLT--KRIDDGMSRVR-LLARYSNGD-------APLP---ELTRNTS-AAWRSFQREARTNWGLMVRDS 66 (456) T ss_pred CCCCCHHHHHHHHH--HHHHHHHHHHH-HHHHHHhcC-------CCch---hcCcccC-hhhhhhhhhhhcchHHHHHHH Confidence 442 221 11111111111 111222110 0000 0111111 2233322 235577999999 Q ss_pred hHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccC--- Q lcl|Aclame:pro 71 LVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGR--- 146 (449) Q Consensus 71 pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~--- 146 (449) +++-+.-+|+++...++.+..+ .+.+.+++ .++-....++.+.+..||.|++++..++ |...-..+++.. T Consensus 67 ~~~~l~~~~~~~~~~~d~~~~~---~~~~i~~~---N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~ 140 (456) T protein:vir:10 67 VADRIIPNGITVGGSADSDLAL---RARRIWRD---NRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVV 140 (456) T ss_pred HHhhhccCCeecCCCCCcchHH---HHHHHHHh---cChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEE Confidence 9999999999875443322221 12222221 2344456667777788999988887743 332222222221 Q ss_pred --------ceeeEEEeccccC-Ch--hhhhccccccccCCceeEEee-ec--ccCCCcc----ceEEccceeeeccC-CC Q lcl|Aclame:pro 147 --------GLQKVSVSWAGSL-KV--AEWDTGINSKTYGQPKLWKYT-ER--LPNGSSR----RVDIHPDRVFILGD-YS 207 (449) Q Consensus 147 --------~l~~i~v~~~~~i-~~--~~~~~Dp~s~~yg~P~~y~i~-~~--~~~~~~~----~~~IH~SRli~~~~-~~ 207 (449) .+.....++...- .+ .....+.....|+.+...... .. .....+. ...-|...++.+.- .. T Consensus 141 i~d~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N 220 (456) T protein:vir:10 141 SVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN 220 (456) T ss_pred EEcCCCCcceEEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecC Confidence 1111111121000 00 000011111112221110000 00 0000010 11123222222211 23 Q ss_pred CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccce-e Q lcl|Aclame:pro 208 EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVL-M 286 (449) Q Consensus 208 ~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l 286 (449) .+|.|.++++...+..++++.........-.+..++.+.-. +. ........+ .... ....+....+.+ . T Consensus 221 ~~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~---~~-~~~~~d~~g-----~~~~-~~~~~~~~~~~~~~ 290 (456) T protein:vir:10 221 PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKST---EH-GLPNVDENG-----NAID-YASIFEAAPGALWE 290 (456) T ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhcc---Cc-ccccccccc-----cccc-hhhhhhhhcccccc Confidence 46889999988777777665433221111111111111000 00 000000000 0000 011122233322 2 Q ss_pred ecCCCceEEe-ecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh----HHHHHHHHHHHHHhhhHHHHHHH Q lcl|Aclame:pro 287 TTQGATVTPL-VTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED----QKYFNARCQSRRVDLSFEIEDFC 361 (449) Q Consensus 287 ~~~~ed~~~~-~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD----~~nyyd~I~~~Qe~~~~p~~~~l 361 (449) .+++.++.++ .+++.+..+.+.....++++.+++|...|-|.+ ++.|++= ....-..++.+|+.+.+.+.+++ T Consensus 291 ~~~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~--~N~Sg~Ai~~~~~~l~~k~~~~~~~f~~~l~~~~ 368 (456) T protein:vir:10 291 LPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS--ANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAIL 368 (456) T ss_pred CCCCcceEEecccChhHHHHHHHHHHHHHHhccCCChHHhcccc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3445565554 445778899999999999999999988776654 2223322 23444555555555555555554 Q ss_pred HHHHHHhcCCC-CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC-CCCCCcc Q lcl|Aclame:pro 362 DKLIELKIIDA-VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP-LGEEDGD 439 (449) Q Consensus 362 ~~l~~~~~~~~-~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~-~~~~~~~ 439 (449) ..++.. .+.. ..++.+.|.|....|..|.|+ ++.++.++| +++.+-+++..++.+..-+- ..+...+ T Consensus 369 rl~~~~-~g~~~~~~~~v~w~~~~~~~~~~~ad-------a~~kl~~~g---i~~~~~~~~~lg~~~~~i~~~e~er~~~ 437 (456) T protein:vir:10 369 VKALQI-EGESVEDTVDVSFESPDRVTLGEKYS-------AASLAKAAG---ESWASIRRNILNYNADQIKQDDLDRARE 437 (456) T ss_pred HHHHHh-cCCCcccceeEEecCCCCcCHHHHHH-------HHHHHHHcC---CChHHHHHhhCCCCHHHHHHHHHHHHHH Confidence 433332 3332 347899999999999887655 444555555 33334344444433221000 0000000 Q ss_pred hhhcccccCC Q lcl|Aclame:pro 440 EEDKATDSAA 449 (449) Q Consensus 440 ee~~~~~~~a 449 (449) +....+..++ T Consensus 438 e~~~~~~~~~ 447 (456) T protein:vir:10 438 QITLFAGNPV 447 (456) T ss_pred HHHHHhhhhh Confidence 0000000000 No 102 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=99.22 E-value=7.3e-12 Score=81.63 Aligned_cols=336 Identities=12% Similarity=0.137 Sum_probs=158.2 Q ss_pred HHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhH--HHHHHHHHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDS--EDETSWEKK 100 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~--~~~~~~e~~ 100 (449) |+|++..-+.. +....... .+..++..-...| .+.++++||+.+|++.-.-.+.+....+.+.. ......+.. T Consensus 1 Mg~f~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~v~~IA~~iA~lp~~~~~~~~~~~~~~~~~~~~~~~ 75 (378) T protein:vir:94 1 MNLFGKVVSFS--RGKLNNDT--QRVTAWQNEAVEY-TSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSD 75 (378) T ss_pred CCccccchhcc--cccccCCc--ceeeeeccchhHH-HHHHHHHHHHHHHhhhhhCceeeEEEcccCcccccccccccch Confidence 55443322111 10110000 0111121112234 44678999999999999888775322211110 000111111 Q ss_pred HHHHHHH-----HHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccC Q lcl|Aclame:pro 101 SKQVFTN-----RLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYG 174 (449) Q Consensus 101 ~~~l~~~-----~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg 174 (449) +.+|... .-...+.+.+.+. -++|-|++++..++. . ..+..+.+. T Consensus 76 l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~-~--------g~~~~l~p~-------------------- 126 (378) T protein:vir:94 76 LDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN-T--------GELLDLLFA-------------------- 126 (378) T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCC-C--------ceEEEEEec-------------------- Confidence 2222211 0112233333333 456777776654331 1 012111110 Q ss_pred CceeEEeeecccCCCccceEEccceeeeccC--CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhh Q lcl|Aclame:pro 175 QPKLWKYTERLPNGSSRRVDIHPDRVFILGD--YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEID 252 (449) Q Consensus 175 ~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~--~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~ 252 (449) ..++.++++.+|||.. +...|.|.++.+...+...-+. ...+. .++. T Consensus 127 ---------------~~~~~~~~~diiH~~~~~~~~~g~s~l~~~~~~i~~~~~~----------~~~~g-il~~----- 175 (378) T protein:vir:94 127 ---------------DDKKEYKPEELVRLTSPFYINEDTSILDNALASIQTKLEQ----------GKLRG-LLKI----- 175 (378) T ss_pred ---------------CCeeEeeeeeeEEecCcCCccchhHHHHHHHHHHHHHHhc----------ccccc-eeee----- Confidence 0134567788888863 2234667776666544322110 00000 0111 Q ss_pred HHHHHhhh-ccChHHHHHHHHHHHHHHhccc---cceeecCCCceEEeecccCChH-HHHHHHHHHHHhhhcCCceeeec Q lcl|Aclame:pro 253 FTNLASLY-GVSIDELQDKFNEVAGEINRGN---DVLMTTQGATVTPLVTSVADPT-ATYNVNLQTAAAGVDIPTRILIG 327 (449) Q Consensus 253 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~ed~~~~~~~lsgl~-d~~~~~~~~iaaas~IP~t~L~G 327 (449) .+.+ .....+..+++.+.+.....+. +.++++.+.+|+.++.+....+ .......+.||.+.|||..+|-| T Consensus 176 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVP~~~l~~ 251 (378) T protein:vir:94 176 ----NAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNENILLG 251 (378) T ss_pred ----CCcCCHHHHHHHHHHHHHHHHHhhcccccccceecCCCceEEEccCChhhhhHHHHHHHHHHHHHHhCCCHHHhcC Confidence 1111 1112333444544444333222 2366667778998887655432 33456678999999999988833 Q ss_pred cCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC-----------CCCceEEeCCCCCCCHHHHHHHHH Q lcl|Aclame:pro 328 NQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA-----------VAKKAVIWDDLNEQTGTEKLTNAK 396 (449) Q Consensus 328 qs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~-----------~~~~~~~f~pL~~~sekE~Aei~~ 396 (449) . ++.+...+||.. .+.|+...+..-+-..+..+ ..++.|++..|...|.++++ T Consensus 252 ~-----~se~~~~~f~~~-------tL~P~~~~ie~~l~~~Ll~~~er~~g~~~~~~~~~~f~~~~l~~~d~~~~~---- 315 (378) T protein:vir:94 252 T-----ASQEQQIYFYNS-------TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELI---- 315 (378) T ss_pred C-----hHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeecchhhhhcCHHHHH---- Confidence 1 222234555532 45666666654443333322 12467788888888887665 Q ss_pred HHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC----------CCCCCcchhhcccccCC Q lcl|Aclame:pro 397 TMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP----------LGEEDGDEEDKATDSAA 449 (449) Q Consensus 397 ~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~----------~~~~~~~ee~~~~~~~a 449 (449) +++.+++++| ++|++|+|+..+++|...-. .++....+-.+..++.+ T Consensus 316 ---~~~~~~~~~G---~~T~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~ 372 (378) T protein:vir:94 316 ---DLYHENINGP---IFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTST 372 (378) T ss_pred ---HHHHHHHhCC---CcCHHHHHHHhCCCCCCCCCeeeecccccccccchhhcCCcCCCCCC Confidence 4566677777 99999999999998864310 00000000000111111 No 103 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=99.21 E-value=1.2e-11 Score=80.54 Aligned_cols=337 Identities=12% Similarity=0.130 Sum_probs=155.4 Q ss_pred HHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhh-HHH-HHHHHHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADD-SED-ETSWEKK 100 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~-~~~-~~~~e~~ 100 (449) |+|.+...+.... ...... ....++..-...| .+..+.++|+++|.+.-.-.+.+....+.+. .+. ....+.. T Consensus 1 Mg~f~~~~~f~~~--~~~~~~--~~~~~~~~~~~~~-~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~~~~~~ 75 (378) T protein:vir:93 1 MNLFGKVVSFSRG--KLNNDT--QRVTAWQNEAVEY-TSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSD 75 (378) T ss_pred Cccchhhhhhhcc--ccCCCc--ceeeecccchhHH-HHHHHHHHHHHHHhhhhhCceeeEEEcccccccccccccccch Confidence 5554433222111 110000 0111111111223 4467899999999999988887643221111 000 0001111 Q ss_pred HHHHHHH-----HHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccC Q lcl|Aclame:pro 101 SKQVFTN-----RLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYG 174 (449) Q Consensus 101 ~~~l~~~-----~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg 174 (449) +.+|... .-...+.+.+.+. -++|.|++++..++ .. . .+..+.+. T Consensus 76 l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~-~~-g-------~~~~l~~~-------------------- 126 (378) T protein:vir:93 76 LDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDD-NT-G-------ELLDLLFA-------------------- 126 (378) T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeec-CC-c-------eEEEEEec-------------------- Confidence 2222110 0011222333333 35677777665432 11 0 11111110 Q ss_pred CceeEEeeecccCCCccceEEccceeeeccCC--CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhh Q lcl|Aclame:pro 175 QPKLWKYTERLPNGSSRRVDIHPDRVFILGDY--SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEID 252 (449) Q Consensus 175 ~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~--~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~ 252 (449) ..++++.++.++||.+. ...|.|.++.....+...-+. + ..+. .++.... T Consensus 127 ---------------~~~~~~~~~diih~r~~~~~~~~~s~l~~~~~~i~~~~~~--~--------~~~g-~l~~~~~-- 178 (378) T protein:vir:93 127 ---------------DDKKEYKTEELVRLTSPFYINEDTSILDNALASIQTKLEQ--G--------KLRG-LLKINAF-- 178 (378) T ss_pred ---------------CCeeEeccceeEEecCccccchhhHHHHHHHHHHHHHHhc--C--------cccc-eeeeCCc-- Confidence 11345677788888632 123666666555443221110 0 0000 0111000 Q ss_pred HHHHHhhhccChHHHHHHHHHHHHHHhccc---cceeecCCCceEEeecccCChH-HHHHHHHHHHHhhhcCCceeeecc Q lcl|Aclame:pro 253 FTNLASLYGVSIDELQDKFNEVAGEINRGN---DVLMTTQGATVTPLVTSVADPT-ATYNVNLQTAAAGVDIPTRILIGN 328 (449) Q Consensus 253 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~ed~~~~~~~lsgl~-d~~~~~~~~iaaas~IP~t~L~Gq 328 (449) .......+..+++.........+. +.++++.+.+|+.++.+..... +.......+||.+.|||..+|-|. T Consensus 179 ------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVPp~~l~g~ 252 (378) T protein:vir:93 179 ------LDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNENILLGT 252 (378) T ss_pred ------CCHHHHHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhhhHHHHHHHHHHHHHHhCCCHHHhcCC Confidence 011112334444544444333322 2466677789999877654332 344667889999999999887431 Q ss_pred CccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC-----------CCCceEEeCCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 329 QQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA-----------VAKKAVIWDDLNEQTGTEKLTNAKT 397 (449) Q Consensus 329 s~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~-----------~~~~~~~f~pL~~~sekE~Aei~~~ 397 (449) ++.+-..+||. ..+.|+...+..-+-..+..+ ..++.|.++.|...+.++++ T Consensus 253 -----~~e~~~~~f~~-------~tl~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~fd~~~l~~~d~~~~~----- 315 (378) T protein:vir:93 253 -----ATQEQQIYFYN-------STIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELI----- 315 (378) T ss_pred -----cHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeeccchhhhcCHHHHH----- Confidence 12223344543 234555555544333332221 12467788889888888765 Q ss_pred HHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCC----------CCCCCCcchhhc-----ccccCC Q lcl|Aclame:pro 398 MGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEE----------PLGEEDGDEEDK-----ATDSAA 449 (449) Q Consensus 398 ~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~----------~~~~~~~~ee~~-----~~~~~a 449 (449) +++.+++++| ++|++|+|+..+++|...- +.++....+..+ +.|+.. T Consensus 316 --~~~~~~~~~G---~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~n 377 (378) T protein:vir:93 316 --DLYHENINGP---IFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNN 377 (378) T ss_pred --HHHHHHHhCC---CcCHHHHHHHhCCCCCCCCCeeeeccccccccchhhhcCccCCCCCCCCCCC Confidence 4566788887 9999999999999986321 000000000000 001111 No 104 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=99.20 E-value=4.4e-11 Score=77.35 Aligned_cols=356 Identities=12% Similarity=0.017 Sum_probs=164.9 Q ss_pred HHHHHHHhhcCccc-----ccchhccC----CcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNKR-----HSAWCEYG----FPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSED 93 (449) Q Consensus 23 ~~~~~~~~g~~t~r-----~~~~~~~~----~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~ 93 (449) |+|..-..+.-... +.....+. ....++. ..|.+++.+.++|+..+.++-.-.+++...... T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~l~~~~v~~~i~~ia~~ia~~~~~~~~~~~~----- 71 (382) T protein:vir:48 1 MPIFNLATESPPDNQGGFFDVVDSDFLASLKGNEWVSA----ETALRNSDLFSIINQLSNDLATVKLITSRKKLQ----- 71 (382) T ss_pred CccccccccCCcccccccccchhhhccccccCCcccch----HhhhccHHHHHHHHHHHHhhccCceeeecchhh----- Confidence 22221111100000 00000000 0112222 234567889999999999998888877532211 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccc Q lcl|Aclame:pro 94 ETSWEKKSKQVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKT 172 (449) Q Consensus 94 ~~~~e~~~~~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~ 172 (449) .+..+=+.. .-+..+.+.+.+. -++|-|++++.- |... .+..|.++....+++... . T Consensus 72 --~L~~~PN~~---~t~~~f~~~l~~~l~l~Gna~~~i~r-d~~G---------~~~~l~~i~~~~v~v~~~-------~ 129 (382) T protein:vir:48 72 --GIVDNPSNN---ANRFNFYQSIFAQMLLGGEAFAYRWR-NENG---------RDMKWEYLRPSQVSFNRL-------D 129 (382) T ss_pred --hhhhhcCCC---CCHHHHHHHHHHHhhhcCCEEEEEEE-CCCC---------cEEEEEEEcCceeEEEEc-------C Confidence 011111111 1112233333333 456767766644 3221 234555555555544221 2 Q ss_pred cCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhh-hhhhhh Q lcl|Aclame:pro 173 YGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAAR-QLNVNF 247 (449) Q Consensus 173 yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~-~l~~~~ 247 (449) .|...+|+|..... ..+..+.++++.||||... ...|.|.++.+...+.....+...... ++++... ...+++ T Consensus 130 ~~~~~~y~~~~~~~-~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~-~~~ng~~p~~il~~ 207 (382) T protein:vir:48 130 NKDGIYYNITFDDP-RIPPKQHVPQNDVLHFRLLSVDGGMTSVSPLMALSRELDIQKASGNLTIN-SLKNALNANGILKI 207 (382) T ss_pred CCCeEEEEEEecCc-cccceeEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHH-HHhccCCCceEEEe Confidence 24456677753321 1223467889999998643 356899999988877555544433333 3333222 122222 Q ss_pred hhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccc-eeecCCCceEEeecccC--ChHHHHHHHHHHHHhhhcCCcee Q lcl|Aclame:pro 248 EKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDV-LMTTQGATVTPLVTSVA--DPTATYNVNLQTAAAGVDIPTRI 324 (449) Q Consensus 248 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ed~~~~~~~ls--gl~d~~~~~~~~iaaas~IP~t~ 324 (449) . +...++..++.........++.+. ++++.+.+|+.++.+.. .+-+......+.||.+.+||-.+ T Consensus 208 ~------------~~~~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~ 275 (382) T protein:vir:48 208 K------------GGGLLDFKTKLSRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPDNV 275 (382) T ss_pred C------------CCCChHHHHHHHHHHHhhccCCCCeeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHH Confidence 1 122233333333333333333333 55666778999887654 34577778889999999999766 Q ss_pred eeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 325 LIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQT 404 (449) Q Consensus 325 L~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~ 404 (449) | |-+....+..+-.+.||. ..+.|+.+.+..-+-..+.. ++.+...+...++.... ...... T Consensus 276 l-g~~~~~~~~~~~~~~~~~-------~~l~p~~~~i~~~l~~~l~~---~~~~~~~~~~~~~~~~~-------~~~~~~ 337 (382) T protein:vir:48 276 V-GGQGDQQSSLEMSSDLYS-------KAVSRYLRPFLSELSQKLSC---DVDADIFPAVDPTGSNY-------ISRINS 337 (382) T ss_pred h-CCCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcC---hhhhhhhhhhccchhHH-------HHHHHH Confidence 6 432211122233445543 23445444443333222221 11111111112222211 123445 Q ss_pred HHHcCCccccCHHHHHHHh---cCCCCC----CCCCCCCC-cchhhcc Q lcl|Aclame:pro 405 MLGSGDNPAFSREEIRTAA---GYDNDD----EEPLGEED-GDEEDKA 444 (449) Q Consensus 405 ~~~~g~~~~~~~~e~r~~~---~~~~~~----~~~~~~~~-~~ee~~~ 444 (449) ++.+| +++.+|+|+.. ++.+.+ +.+.+..+ +|+.+.+ T Consensus 338 l~~~g---~~t~~e~r~~l~~~g~~~~~~~~~~~~~~~~~GGd~~~~~ 382 (382) T protein:vir:48 338 LVKTG---TLAQNQGLYILQQAEILPKELPNGENPNSTLKGGEEDGQD 382 (382) T ss_pred HhhcC---ccCHHHHHHHHhhCCCCCcchhhhhcCCCCCCCCCCCCCC Confidence 67776 88899999875 333321 11112111 1221222 No 105 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=99.19 E-value=1.1e-11 Score=80.77 Aligned_cols=334 Identities=11% Similarity=0.134 Sum_probs=155.0 Q ss_pred HHHHHHHhhcCcc-cccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhH-H-----HHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNK-RHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDS-E-----DET 95 (449) Q Consensus 23 ~~~~~~~~g~~t~-r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~-~-----~~~ 95 (449) |+|.+...+.... ++.- -.+..++..-...| .+..+.++|+.+|++.-.-.+.+....+.+.. + ... T Consensus 1 Mg~f~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~v~~~i~~Ia~~iA~l~~~~~~~~~~~~~~~~~~~~~~~ 74 (378) T protein:vir:16 1 MNLFGKVVSFSRGKLNND-----TQRVTAWQNEAVEY-TSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGS 74 (378) T ss_pred CccchhhhhhhcccccCC-----cceeeecccchhhH-HHHHHHHHHHHHHhhhhhCceeEEEEcccccccccccccccc Confidence 4544332221111 1000 01111221112234 34578999999999999888876422211100 0 011 Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhcc-ccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhcccccccc Q lcl|Aclame:pro 96 SWEKKSK-QVFTNRLWRSFAEADRRRL-VGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTY 173 (449) Q Consensus 96 ~~e~~~~-~l~~~~~~~~~~ea~~~~r-l~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~y 173 (449) .+...++ +=....-...|.+.+.+.. ++|.+++++.. |+.. ..+..+.+.+ T Consensus 75 ~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~-d~~~--------g~~~~l~~~~------------------ 127 (378) T protein:vir:16 75 DLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVF-DDNT--------GELLDLLFAD------------------ 127 (378) T ss_pred hHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEe-ecCC--------ceEEEEEecC------------------ Confidence 1222221 0000001112333333333 46777776554 3221 0122221110 Q ss_pred CCceeEEeeecccCCCccceEEccceeeeccCC--CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh Q lcl|Aclame:pro 174 GQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY--SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI 251 (449) Q Consensus 174 g~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~--~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~ 251 (449) .++.+.++.||||... -..|.|.++.+...+...-+ + ...+. .++. T Consensus 128 -----------------~~~~~~~~diih~r~~~~~~~~~s~l~~~~~~i~~~~~---~-------~~~~g-~l~~---- 175 (378) T protein:vir:16 128 -----------------DKKEYKPEELVRLTSPFYINEDTSILDNALASIQTKLE---Q-------GKLRG-LLKI---- 175 (378) T ss_pred -----------------CeeEecccceEEecCccCccchhHHHHHHHHHHHHHHh---c-------Cccce-eeEe---- Confidence 1245667778887531 12355555554443321111 0 00000 0110 Q ss_pred hHHHHHhhh-ccChHHHHHHHHHHHHHHhccc---cceeecCCCceEEeecccC--ChHHHHHHHHHHHHhhhcCCceee Q lcl|Aclame:pro 252 DFTNLASLY-GVSIDELQDKFNEVAGEINRGN---DVLMTTQGATVTPLVTSVA--DPTATYNVNLQTAAAGVDIPTRIL 325 (449) Q Consensus 252 ~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~ed~~~~~~~ls--gl~d~~~~~~~~iaaas~IP~t~L 325 (449) .+.+ .....+..+++.......+.+. ..++++.+.+|+.++.+.. .+. .......+||.+.|||..+| T Consensus 176 -----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l 249 (378) T protein:vir:16 176 -----NAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKD-EIDLIKSELLTGYFMNENIL 249 (378) T ss_pred -----CCcCCHHHHHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhhhHH-HHHHHHHHHHHHhCCCHHHh Confidence 1111 1112334445554444433332 2466677788999887654 343 34667789999999999888 Q ss_pred eccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC-----------CCCceEEeCCCCCCCHHHHHHH Q lcl|Aclame:pro 326 IGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA-----------VAKKAVIWDDLNEQTGTEKLTN 394 (449) Q Consensus 326 ~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~-----------~~~~~~~f~pL~~~sekE~Aei 394 (449) -|. ++.+...+||.. .+.|+.+.+..-+-..+..+ ..++.|.+..|...|.+++++ T Consensus 250 ~g~-----~~e~~~~~f~~~-------tl~P~~~~ie~~l~~kLl~~~e~~~~~~~~~~~~~~f~~~~l~~~d~~~~~~- 316 (378) T protein:vir:16 250 LGT-----ASQEQQIYFYNS-------TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELID- 316 (378) T ss_pred cCC-----chHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCChhhhhhhhhcccccceeeccchhhhcCHHHHHH- Confidence 431 222344555533 34565555554443333221 124778888999998887754 Q ss_pred HHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC----------CCCCCcchhhcccccCC Q lcl|Aclame:pro 395 AKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP----------LGEEDGDEEDKATDSAA 449 (449) Q Consensus 395 ~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~----------~~~~~~~ee~~~~~~~a 449 (449) ++.+++++| ++|++|+|+..+++|...-. .++....+-.+..+..+ T Consensus 317 ------~~~~~~~~G---~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~ 372 (378) T protein:vir:16 317 ------LYHENINGP---IFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTST 372 (378) T ss_pred ------HHHHHHhCC---CcCHHHHHHHhCCCCCCCCCeEeeccccccccchhhhcCccCCCCCC Confidence 466777887 99999999999999863210 00000000000011111 No 106 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.19 E-value=6.4e-11 Score=76.48 Aligned_cols=423 Identities=13% Similarity=0.066 Sum_probs=199.4 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCH------------HHHHHHHHcCchhHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTY------------ENLYSLYRRGGIAHGAV 68 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~------------~~l~~~Y~~~~l~r~iV 68 (449) |+=.-.+++..... .+..+ ++....++. +.+...| .|...+. .-...+|+.|++++++| T Consensus 1 ~~~~~~~~~~~~~~-~~~~~---~~~~~a~~~-~~~~~~w----~~~~~s~~~~i~~~~~~lr~RaRdl~rNn~~a~~av 71 (530) T protein:vir:38 1 MKIPSLVGPDGKTS-LREYA---GYHGGGGGF-GGQLRGW----NPPSESADAALLPNYSRGNARADDLVRNNGYAANAV 71 (530) T ss_pred CccceeecCccccc-hHHHh---hhhcccCCC-CCccccc----ccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHH Confidence 76666666664222 11111 111111111 1111112 1111221 23467899999999999 Q ss_pred hhhHHHHhcCCcEEecCC--------ChhhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhccccccEEEE Q lcl|Aclame:pro 69 EKLVGKCWQTNPEIIEGD--------DADDSEDETSWEKKSKQVFT-----------NRLWRSFAEADRRRLVGRYAGIL 129 (449) Q Consensus 69 d~pa~d~~r~~~~i~~~~--------~~~~~~~~~~~e~~~~~l~~-----------~~~~~~~~ea~~~~rl~Gga~i~ 129 (449) +......+=.|+++.... +..+.+....+|+.++..-. ..+..-..-+.+-.-..|-+.+. T Consensus 72 ~~~~~nvVG~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~ 151 (530) T protein:vir:38 72 QLHQDHIVGSFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGELCVQ 151 (530) T ss_pred HHHHHHhhCCCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCceEEE Confidence 999999999998865421 11222223334443332110 01112122233332334555555 Q ss_pred EEecCCCcccccccccCceeeEEEeccccCChh------hhh-ccccccccCCceeEEeeecccCCCc--------cceE Q lcl|Aclame:pro 130 LHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVA------EWD-TGINSKTYGQPKLWKYTERLPNGSS--------RRVD 194 (449) Q Consensus 130 i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~------~~~-~Dp~s~~yg~P~~y~i~~~~~~~~~--------~~~~ 194 (449) +.......+.-|+ .|.+++...|... ... .-..--.+|+|..|+|......+.. .... T Consensus 152 ~~~~~~~g~~~~~-------~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~ 224 (530) T protein:vir:38 152 ATWDSDSTRLFRT-------QFKMVSPKRVSNPNNIGDTRNCRAGVKINDSGAALGYYVSDDGYPGWMAQNWTYIPRELP 224 (530) T ss_pred eeeccCCCCccce-------EEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEEeeccCCCccccccceeeeeec Confidence 5443222222222 1223333223210 000 1111135799999999754322211 2345 Q ss_pred EccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhh-hccChHHHHH Q lcl|Aclame:pro 195 IHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASL-YGVSIDELQD 269 (449) Q Consensus 195 IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~-~~~~~~~~~~ 269 (449) |+..+|+|+... -..|+|.+-++...+.+++....+ +++-+.....+..-++....-...... .+....+... T Consensus 225 v~a~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~da--el~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~ 302 (530) T protein:vir:38 225 GGRPSFIHVFEPMEDGQTRGANAFYSVMEQMKMLDTLQNT--QLQSAIVKAMYAATIESELDTQSAMDFILGADNKEQQS 302 (530) T ss_pred cChhHeEeeccccCCCcccCCchHHHHHHHHHHHhHHHHH--HHHHHHHhhhheeeeeccCCccccccccccCCcccccc Confidence 667788887543 356999999999999888886443 333222222221111111111111110 0010000000 Q ss_pred HH-----------HHHHHHHhccccceeecCCCceEEeecc--cCChHHHHHHHHHHHHhhhcCCceeeeccCcccc-cc Q lcl|Aclame:pro 270 KF-----------NEVAGEINRGNDVLMTTQGATVTPLVTS--VADPTATYNVNLQTAAAGVDIPTRILIGNQQAER-SS 335 (449) Q Consensus 270 ~~-----------~~~~~~~~~~~~~~l~~~~ed~~~~~~~--lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~-~s 335 (449) .+ ......+..+. ...+..+++++..+.+ -++..+........||+..|||...|.|--.+.+ +| T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~pG~-i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~~nYSS 381 (530) T protein:vir:38 303 KLTGWLGEMAAYYSAAPVRLGGAR-VPHLLPGDSLNLQSAQDTDNGYSTFEQSLLRYIAAGLGVSYEQLSRNYSQMSYST 381 (530) T ss_pred cccccchhhhhcccccceeccCce-eeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHH Confidence 00 00001122232 2234568888888765 4688999999999999999999999999654444 33 Q ss_pred c-hhHHHHHHHHHHHHHhhh----HHHHH-HHHHHHHHhcCCCCCCc------------eEEe--CCCCCCCHHHHHHHH Q lcl|Aclame:pro 336 T-EDQKYFNARCQSRRVDLS----FEIED-FCDKLIELKIIDAVAKK------------AVIW--DDLNEQTGTEKLTNA 395 (449) Q Consensus 336 ~-eD~~nyyd~I~~~Qe~~~----~p~~~-~l~~l~~~~~~~~~~~~------------~~~f--~pL~~~sekE~Aei~ 395 (449) . ..+..+...++.+|..+. +|+.+ +|+..+..+....|... ..+| +..-..+. T Consensus 382 ~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~av~~G~i~~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP------- 454 (530) T protein:vir:38 382 ARASANESWAYFMGRRKFVASRQACQMFLCWLEEAIVRRVVTLPSKARFSFQEARTAWGNANWIGSGRMAIDG------- 454 (530) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCccCCCCCCCCchhhHHhhhceeeecCCccccCh------- Confidence 2 377778888888887654 44443 45555555555544321 2233 33333343 Q ss_pred HHHHHHHHHHHHcCCcc--------ccCHHHHH----------HHhcCCCCCCCC---C-CCCCcchhhcccccCC Q lcl|Aclame:pro 396 KTMGEINQTMLGSGDNP--------AFSREEIR----------TAAGYDNDDEEP---L-GEEDGDEEDKATDSAA 449 (449) Q Consensus 396 ~~~A~a~~~~~~~g~~~--------~~~~~e~r----------~~~~~~~~~~~~---~-~~~~~~ee~~~~~~~a 449 (449) .|.+++....+++|... -.+.+|+- +..|+..+.... . .....+++..+..+.| T Consensus 455 ~Ke~~a~~~~i~~G~~s~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~d~~~~a 530 (530) T protein:vir:38 455 LKEVQEAVMLIEAGLSTYEKECAKRGDDYQEIFAQQVRESMERRAAGLNPPAWAAAAFEAGVKKSNEEEQDGARAA 530 (530) T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCCCCCCCCCCCCCC Confidence 34566667777777332 12222221 122444332211 0 1111112222222333 No 107 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=99.16 E-value=1e-09 Score=69.81 Aligned_cols=406 Identities=12% Similarity=0.024 Sum_probs=153.5 Q ss_pred CchhhHHH---------HHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhh Q lcl|Aclame:pro 1 MTDKLTLA---------VNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKL 71 (449) Q Consensus 1 ~~~~~~~~---------v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~p 71 (449) ||=++.+. ++...+.-..-..|+....-- .-| ..+-.. .+... ..++........++++|||.. T Consensus 1 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~Y-y~G-~~~i~~----~~~~~-~~~~~~~~~~~n~~~~ivd~~ 73 (485) T protein:vir:10 1 MTAPLPGQEEIEDPAIARDEMVSAFEDSTQNLKTNTSY-YEA-ERRPEA----IGVTV-PIQMQSLLAHVGYPRLYVDSI 73 (485) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-CCcchh----cCCCC-ChhhhhhhhhcCcHHHHHHHH Confidence 33222211 111111111111111111000 001 110000 11111 223344444456889999999 Q ss_pred HHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeE Q lcl|Aclame:pro 72 VGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKV 151 (449) Q Consensus 72 a~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i 151 (449) ++-+.=+||++ +++.+..+ .+.+.++ ..++-.+..++.+.+..||-|++++..+++.. ++...++-..| T Consensus 74 ~~~l~~~g~~~--~~~~~~~~---~~~~i~~---~N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~---~~~~~~~~~~i 142 (485) T protein:vir:10 74 AERQAVEGFRF--GDADEADE---ELWQWWQ---ANNLDIEAPLGYTDAYVHGRSYITISRPDPQI---DLGWDPNTPII 142 (485) T ss_pred Hhhhcccceec--CCCchhHH---HHHHHHH---hcCHhHHHHHHHHHHhhcCceEEEEeeCCccc---ccccCCCeeEE Confidence 99887777764 22221111 1222221 12444566677777788999998887753221 11111111112 Q ss_pred EEeccccCChh------------hhhcc-----ccccccCCce-eEEeeecccCCCccce-EE-ccce---eeeccCCC- Q lcl|Aclame:pro 152 SVSWAGSLKVA------------EWDTG-----INSKTYGQPK-LWKYTERLPNGSSRRV-DI-HPDR---VFILGDYS- 207 (449) Q Consensus 152 ~v~~~~~i~~~------------~~~~D-----p~s~~yg~P~-~y~i~~~~~~~~~~~~-~I-H~SR---li~~~~~~- 207 (449) .++++.++.+. .+..+ .....++.|. .|.+... ++..... .+ |.-- |+.|.+++ T Consensus 143 ~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~~~~g~vPvv~~~n~~~ 220 (485) T protein:vir:10 143 RVEPPTRMYAEIDPRIGRVSKAIRVAYDAEGNEIQAATLYTPNDIFGWYRV--ENEWQEWFNNPHGLGVVPVVPIPNRTR 220 (485) T ss_pred EEEccceeEEEEcCCCCceeEEEEEEEeeCCCeEEEEEEEeCCeEEEEEEc--CCceEEeccccCCCCcccEEEeccccc Confidence 22211111100 00000 0011112221 1221110 1110000 11 3322 23344332 Q ss_pred ---CCcchhHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc Q lcl|Aclame:pro 208 ---EDAIGFLEP-AYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND 283 (449) Q Consensus 208 ---~~G~s~l~~-~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (449) .+|+|.+++ +..-+..++++..-........+..++.+. ..+..++....+.+ .. .+....+ T Consensus 221 ~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~---G~~~~~~~~~~~~~----~~-------~~~~~~~ 286 (485) T protein:vir:10 221 LSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIF---GIKPEEIGVDPETG----QT-------LFDAYLA 286 (485) T ss_pred cCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHh---cCCccccccccccc----ch-------hhhhccc Confidence 357887764 444344445443222111111111111110 00000000000000 00 1111223 Q ss_pred ceeecCCCceEEeecc---cCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHH----HHHHHHHHHHHhhhH Q lcl|Aclame:pro 284 VLMTTQGATVTPLVTS---VADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQK----YFNARCQSRRVDLSF 355 (449) Q Consensus 284 ~~l~~~~ed~~~~~~~---lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~----nyyd~I~~~Qe~~~~ 355 (449) .++...+++.+..+.+ +.+..+.+.....++|+.+++|...| |.... +++++ =++ .....++.+|+.+.+ T Consensus 287 ~i~~~~~~d~k~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~f-g~~~~-n~~Sg~Al~~~~~~l~~k~~~k~~~f~~ 364 (485) T protein:vir:10 287 RILAFEDAEGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYL-STAAD-NPASAEAIRAAESRLIKKVERKNSIFGG 364 (485) T ss_pred ceeccCCCCceEEeecccchHHHHHHHHHHHHHHhcccCCCHHHh-ccccC-chhHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3344344444433333 44566777777889999999998776 53332 33444 233 334444444444444 Q ss_pred HHHHHHHHHHHHhcC-CC-C--CCceEEeCCCCCCCHHHHHHHHHHHHHHH------HHHHH-cCCccccCHH---HHH- Q lcl|Aclame:pro 356 EIEDFCDKLIELKII-DA-V--AKKAVIWDDLNEQTGTEKLTNAKTMGEIN------QTMLG-SGDNPAFSRE---EIR- 420 (449) Q Consensus 356 p~~~~l~~l~~~~~~-~~-~--~~~~~~f~pL~~~sekE~Aei~~~~A~a~------~~~~~-~g~~~~~~~~---e~r- 420 (449) .+.+++..++....+ .. + .++.+.|.|-...|.+|.|+...+..++- .++.. .| ++++ |++ T Consensus 365 ~l~~~~~l~~~~~~~~~~~~~~~~i~v~w~~~~~~~~~~~ada~~kl~~ag~~~~s~et~~~~lg----~~~~~~~~~~~ 440 (485) T protein:vir:10 365 AWEEAMRLAYRMMKGGDVPPDMLRMETVWRDPSTPTYAAKADAASKLYNGGTGVIPRERARKDMG----YSIAEREEMRR 440 (485) T ss_pred HHHHHHHHHHHHhCCCCCcccceeeeEEecCCCCCCHHHHHHHHHHHHhccccCCCHHHHHHhCC----CCHhHHHHHHH Confidence 454444433333222 12 2 26789999999999998887766654431 11111 12 1222 221 Q ss_pred --HHhc---------CCCCCCCCCCCCCcchhhcccc--------cCC Q lcl|Aclame:pro 421 --TAAG---------YDNDDEEPLGEEDGDEEDKATD--------SAA 449 (449) Q Consensus 421 --~~~~---------~~~~~~~~~~~~~~~ee~~~~~--------~~a 449 (449) ++.. +-.+.. ..++. ++++.+.+ +.| T Consensus 441 ~~ee~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~ 485 (485) T protein:vir:10 441 WDEEEAAMGLGLIGTMVDPNP-TVPGS--PSPAPAPKPAALESGGDAA 485 (485) T ss_pred HHHHHHHHHHHHHHHhhccCC-CCCCC--CCccccccCcCCCCCCCCC Confidence 1100 000110 01111 11111111 122 No 108 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=99.16 E-value=7.8e-10 Score=70.52 Aligned_cols=385 Identities=8% Similarity=-0.047 Sum_probs=182.3 Q ss_pred CchhhHH--------HH-HhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhh Q lcl|Aclame:pro 1 MTDKLTL--------AV-NHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKL 71 (449) Q Consensus 1 ~~~~~~~--------~v-~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~p 71 (449) |+..|-- .+ +-... ..+...+.. .+..+++.|.. +....+- ..-.+..-++.|. ++.-...++++- T Consensus 1 m~~~i~~~~g~p~~~~~~~~~~~-~~ia~~~~~-~~~~~~~~~~~-~~~~iLr-~~~~~~~~y~~m~-~D~~i~s~l~~R 75 (491) T protein:vir:10 1 MSKGLWVSPTEFVTFGEPDKSLS-SQIATRARS-IDFFALGMYLP-NPDPVLK-ALGKDIRVYRELR-ADAHVGGCVRRR 75 (491) T ss_pred CCCceeCCCCCccCcccCChHHH-HHHHhhhcc-cccccccCCcc-chHHHHH-hcCCCHHHHHHHh-hChHHHHHHHHH Confidence 5544421 00 00010 111111111 12222222221 1111110 0112445566666 467778888888 Q ss_pred HHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCceee Q lcl|Aclame:pro 72 VGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRGLQK 150 (449) Q Consensus 72 a~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~l~~ 150 (449) -.-.+..-|+|..+.+++ +....+...++++ . +..+...+-.+.+||+|++=+.-. ++..+ .+.. T Consensus 76 k~av~~~~w~i~~~~~~~--~~~e~v~e~l~~~---~-~~~~l~~~lda~~~G~s~~Ei~w~~~~g~~--------~~~~ 141 (491) T protein:vir:10 76 KAAVKALEWGLDRGKAKS--RVAKSIADVFADL---D-LSRIVTEMLDAVLYGYQPMEITWGKVGNYI--------VPID 141 (491) T ss_pred HHHHhCCCcEEecCCCCH--HHHHHHHHHHhcC---C-HHHHHHHHHHhhhhcceeEEEEEeecCCee--------EEEE Confidence 887877777886554322 1122222222222 2 233334444677899999876552 21111 1223 Q ss_pred EEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeecc----CCCCCcchhHHHHHHHHHHHHH Q lcl|Aclame:pro 151 VSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILG----DYSEDAIGFLEPAYNAFVSLEK 226 (449) Q Consensus 151 i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~----~~~~~G~s~l~~~~~~l~~~~~ 226 (449) |.+..+..+. .|+. +.. .|.- .++...+..+++-+.+++. .+..+|.++++.||+...--.. T Consensus 142 l~~r~~~~f~-----~d~~----~~l-~~~~----~~~~~~g~~l~~~k~i~~~~~~~~~~p~g~gLl~~~~w~~~fK~~ 207 (491) T protein:vir:10 142 VVGKPADWFV-----YDPE----NQL-RFRS----KDHWMQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKG 207 (491) T ss_pred eeeeccccee-----eccC----Cce-EEec----CCCCCCcceecCCCEEEEEecCCCCCcccchhHHHHHHHHHHHHH Confidence 3332222111 1221 111 1111 1223345666777766654 3456799999999987654444 Q ss_pred HhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeeccc-CC--- Q lcl|Aclame:pro 227 VEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSV-AD--- 302 (449) Q Consensus 227 ~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~l-sg--- 302 (449) ...-++..+-+...-....++ .....++..+.+.+.+..+.+. ..+++..+.+++.++..- +| T Consensus 208 ~~~~w~~f~E~yG~P~~igky------------~~~a~~~ek~~l~~al~~~~~~-a~~viP~~~~ie~~ea~~~~g~~~ 274 (491) T protein:vir:10 208 GLKFWVQFTEKYGSPMLVGKH------------PRSASDGEKNLLLDCLEDMVQD-AVAVVPDDSSIEIKEAAGKTGSAD 274 (491) T ss_pred HHHHHHHHHHHcCCCeEEEec------------CCCCCHHHHHHHHHHHHHHhcC-cEEEecCCceeEEEecCCCCCChh Confidence 433333333222211111111 0112344445555566666443 457778888999988764 22 Q ss_pred -hHHHHHHHHHHHHhhhcCCceeeeccC-----ccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCC Q lcl|Aclame:pro 303 -PTATYNVNLQTAAAGVDIPTRILIGNQ-----QAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAK 375 (449) Q Consensus 303 -l~d~~~~~~~~iaaas~IP~t~L~Gqs-----~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~ 375 (449) -..+++..-.+||-+ ++||. .|+.+.++ -....-+.+++....+..-+..++..|+...++..+ . T Consensus 275 ~y~~li~~~d~~Isk~-------iLGqtlTt~~~gs~a~~~vh~~v~~di~~~D~~~i~~tln~li~~l~~~N~~~~~-~ 346 (491) T protein:vir:10 275 VYERLLHFCRGEVSIA-------LLGQNQTTEATSTRASAQAGLEVTDDIRDGDKAVVSEAMNMLIRWICDLNFDGAD-R 346 (491) T ss_pred HHHHHHHHHHHHHHHH-------HhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-c Confidence 345666666777743 34432 22222222 233455555555444444455566667777766433 4 Q ss_pred ceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCCC-CCcchhhcccccCC Q lcl|Aclame:pro 376 KAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGE-EDGDEEDKATDSAA 449 (449) Q Consensus 376 ~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~~-~~~~ee~~~~~~~a 449 (449) ..|+|... .|..++.|++++++++.|. .++.+.+++..|++.+..+.... ........+...++ T Consensus 347 p~f~~~~~--------~e~~~~~a~~~~~L~~~G~--~i~~~~i~e~~Gip~~~~~~~~~~~~~~~~~~~~~~~~ 411 (491) T protein:vir:10 347 PVFDMWEQ--------EQVDEIQAGRDQKLTQAGA--RFTPAYFKRAYNLQDGDLDERPLPVSAVDTVGAASFAE 411 (491) T ss_pred ceEEecCc--------CchhHHHHHHHHHHHhCCC--cCCHHHHHHHhCCCCCCcCccccccCCCCCcccccccc Confidence 56666322 1444677899999999983 46889999999987654321110 00000000000000 No 109 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.14 E-value=5.7e-10 Score=71.26 Aligned_cols=424 Identities=12% Similarity=0.046 Sum_probs=196.2 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhc-Cccc-ccchhccCCcccCCH------------HHHHHHHHcCchhHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGL-DNKR-HSAWCEYGFPELVTY------------ENLYSLYRRGGIAHG 66 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~-~t~r-~~~~~~~~~~~~~~~------------~~l~~~Y~~~~l~r~ 66 (449) |-.=.--++.. .+-.+.+..+..--.+. .+.+ -..| .|...+. .-...+|+.|+++++ T Consensus 1 ~~~p~~~~~~~----~~~~~~~~~~~~y~~~a~~~~~~~~~w----~p~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~ 72 (533) T protein:vir:34 1 MKTPTIPTLLG----PDGMTSLREYAGYHGGGSGFGGQLRSW----NPPSESVDAALLPNFTRGNARADDLVRNNGYAAN 72 (533) T ss_pred CCCchhhhhhc----ccccchHHHHHhhhhccCCCCCccccc----ccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHH Confidence 21110000000 00001111111111111 1111 1111 1222222 234678999999999 Q ss_pred HHhhhHHHHhcCCcEEecCC--------ChhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhccccccEE Q lcl|Aclame:pro 67 AVEKLVGKCWQTNPEIIEGD--------DADDSEDETSWEKKSKQVFTN-----------RLWRSFAEADRRRLVGRYAG 127 (449) Q Consensus 67 iVd~pa~d~~r~~~~i~~~~--------~~~~~~~~~~~e~~~~~l~~~-----------~~~~~~~ea~~~~rl~Gga~ 127 (449) +|+......+=.|+++.... +..+.+....+|+.++..... .+..-...+.+--...|-+. T Consensus 73 av~~~~~nvVG~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~f 152 (533) T protein:vir:34 73 AIQLHQDHIVGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHAFNGELF 152 (533) T ss_pred HHHHHHHHhhCCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHHHHhCCceE Confidence 99999999998898875421 122223334444444322110 11111222333333446665 Q ss_pred EEEEecCCCcccccccccCceeeEEEeccccCChh--hh-----hccccccccCCceeEEeeecccCCC--------ccc Q lcl|Aclame:pro 128 ILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVA--EW-----DTGINSKTYGQPKLWKYTERLPNGS--------SRR 192 (449) Q Consensus 128 i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~--~~-----~~Dp~s~~yg~P~~y~i~~~~~~~~--------~~~ 192 (449) +.+..+-..+..-|+ .|.+++...|... .. ..-..--.+|+|..|+|.....++. ... T Consensus 153 ~~~~~~~~~g~~~~~-------~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~ 225 (533) T protein:vir:34 153 VQATWDTSSSRLFRT-------QFRMVSPKRISNPNNTGDSRNCRAGVQINDSGAALGYYVSEDGYPGWMPQKWTWIPRE 225 (533) T ss_pred EEeeeccCCCCccce-------EEEEechhhcCCCCCCCCCCceEeeeEECCCCCeEEEEEeecCCCCccccccceeeee Confidence 555443211211222 1333333333211 00 0112223579999999974332221 112 Q ss_pred eEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHh-hhccChHHH Q lcl|Aclame:pro 193 VDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLAS-LYGVSIDEL 267 (449) Q Consensus 193 ~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~~~ 267 (449) ..|+.++|+|+... -..|+|.+-++...+.+++....+ ++.-......+..-++....-..... ..+...+.. T Consensus 226 ~~v~a~~VlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~da--el~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~ 303 (533) T protein:vir:34 226 LPGGRASFIHVFEPVEDGQTRGANVFYSVMEQMKMLDTLQNT--QLQSAIVKAMYAATIESELDTQSAMDFILGANSQEQ 303 (533) T ss_pred eccChhHeeeeccccCCCcccCCchHHHHHHHHHHHHHHHHH--HHHHHHHhhhheeeeecCCCcccccccccCCCcccc Confidence 45778888887543 356999999999999888886543 33322222222111111111000001 011111111 Q ss_pred HHHHH----HHH-------HHHhccccceeecCCCceEEeecc--cCChHHHHHHHHHHHHhhhcCCceeeeccCcccc- Q lcl|Aclame:pro 268 QDKFN----EVA-------GEINRGNDVLMTTQGATVTPLVTS--VADPTATYNVNLQTAAAGVDIPTRILIGNQQAER- 333 (449) Q Consensus 268 ~~~~~----~~~-------~~~~~~~~~~l~~~~ed~~~~~~~--lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~- 333 (449) ...+. ... ..+..+. ..-+..+++++.++.+ -++..+........||+..|||...|.|--.+.+ T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~pG~-i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iAaglGi~ye~lt~D~s~~nY 382 (533) T protein:vir:34 304 RERLTGWIGEIAAYYAAAPVRLGGAK-VPHLMPGDSLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSRNYAQMSY 382 (533) T ss_pred cccccccchhhhhccCcceeeccCce-eeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccH Confidence 11110 000 0122222 2224467888888765 4689999999999999999999999999654444 Q ss_pred ccc-hhHHHHHHHHHHHHHhhh----HHHHH-HHHHHHHHhcCCCCCCc------------eEEe--CCCCCCCHHHHHH Q lcl|Aclame:pro 334 SST-EDQKYFNARCQSRRVDLS----FEIED-FCDKLIELKIIDAVAKK------------AVIW--DDLNEQTGTEKLT 393 (449) Q Consensus 334 ~s~-eD~~nyyd~I~~~Qe~~~----~p~~~-~l~~l~~~~~~~~~~~~------------~~~f--~pL~~~sekE~Ae 393 (449) +|. ..+..+...++..|..+. +|+.+ +|+..+..+..+.|... ..+| +..-..+. T Consensus 383 SS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~ail~G~i~~p~~~~~~~~~~~~~~~~~~w~~p~~~~iDP----- 457 (533) T protein:vir:34 383 STARASANESWAYFMGRRKFVASRQASQMFLCWLEEAIVRRVVTLPSKARFSFQEARSAWGNCDWIGSGRMAIDG----- 457 (533) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCccCCCchhhHHhhhceeeccCCccccCh----- Confidence 333 367778888888887544 45554 45555555555544321 2233 33333333 Q ss_pred HHHHHHHHHHHHHHcCCccc--------cCHHHHH----------HHhcCCCCCCC---CCCCCCcchhhcccccCC Q lcl|Aclame:pro 394 NAKTMGEINQTMLGSGDNPA--------FSREEIR----------TAAGYDNDDEE---PLGEEDGDEEDKATDSAA 449 (449) Q Consensus 394 i~~~~A~a~~~~~~~g~~~~--------~~~~e~r----------~~~~~~~~~~~---~~~~~~~~ee~~~~~~~a 449 (449) .|.+++....+++|.... .+.+|+. +..++.++... .......++++..++.+| T Consensus 458 --~Ke~~a~~~~i~~G~~s~~~~~a~~G~D~~ev~~q~a~e~~~~~~~gl~~~~~~~~~~~s~~~~~~~~~~~~~~~ 532 (533) T protein:vir:34 458 --LKEVQEAVMLIEAGLSTYEKECAKRGDDYQEIFAQQVRETMERRAAGLKPPAWAAAAFESGLRQSTEEEKSDSRA 532 (533) T ss_pred --HHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcCccCCCCCCCCCCcccCCC Confidence 355677777788873321 1222221 12244433221 111111222222222222 No 110 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=99.12 E-value=4.5e-10 Score=71.85 Aligned_cols=370 Identities=12% Similarity=0.046 Sum_probs=159.9 Q ss_pred CCcccCCHHHHHHHHH--cCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 44 GFPELVTYENLYSLYR--RGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRL 121 (449) Q Consensus 44 ~~~~~~~~~~l~~~Y~--~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~r 121 (449) +.|+... +++....+ ...++++|||.+++=+.=+||+. .+..++. .+...++ +.++-.+..++.+.+. T Consensus 1 ~l~~~~~-~~~~~~~~~~v~n~~~~ivd~~~~~l~~~gf~~--~d~~~~~----~~~~i~~---~N~~d~~~~~~~~~a~ 70 (434) T protein:vir:98 1 MLPKNAE-QAFLDFQRKARTNFCGLIANASVHRLLALGVTG--PDGEPDT----RASRWWQ---ANRLDSRQKLVWRMAM 70 (434) T ss_pred CCCCCcc-HHHHHhhhhhhccchHHHHHHHHhhhccCceec--CCCchHH----HHHHHHH---hcChhHHHHHHHHHHh Confidence 2233322 44544443 34688999999999887778753 2222221 1112221 2245566677777788 Q ss_pred ccccEEEEEEecCCCc-c---ccc----ccccC----------c-eeeEEEeccccCChhhhhcccccc--ccCCceeEE Q lcl|Aclame:pro 122 VGRYAGILLHIRDEKD-W---NLP----ATKGR----------G-LQKVSVSWAGSLKVAEWDTGINSK--TYGQPKLWK 180 (449) Q Consensus 122 l~Gga~i~i~i~d~~~-~---~~P----l~~~~----------~-l~~i~v~~~~~i~~~~~~~Dp~s~--~yg~P~~y~ 180 (449) +||-|++++..+.+.. . ..| +++.. . +..|++ |...... + ...- .|+.-..|. T Consensus 71 i~G~ay~~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~~~~ai~~-~~~~~~~----~-~~~~~~~~~~~~~~~ 144 (434) T protein:vir:98 71 AQSAGYMLVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETGEPLVGLKV-WHNDIDG----F-GYARVFFDDTSFPYR 144 (434) T ss_pred hcCceEEEEecCCCcccccCCceeEEEEeccceeEEEEeCCCCceEEEEEE-EEeccCC----c-eEEEEEEeCcEEEEE Confidence 9999998887643211 1 011 11110 1 111211 1100000 0 0000 001111111 Q ss_pred eeecccC----CCc--------cceEEccc-e--eeeccCCC---CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh Q lcl|Aclame:pro 181 YTERLPN----GSS--------RRVDIHPD-R--VFILGDYS---EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQ 242 (449) Q Consensus 181 i~~~~~~----~~~--------~~~~IH~S-R--li~~~~~~---~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~ 242 (449) ....... +.. ....-|+= + ++.|.+++ .+|.|.++++.+.+..++++.........-.+..+ T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~~g~sd~e~vi~liDa~~~~~s~~~~~~~~~a~p~ 224 (434) T protein:vir:98 145 TRERTGARLPWGPDSWVYTGTADSGDVHDLGGMQLVEFARMPDLGEDPEPEFAGVLDIQDRVNLGILNRMAASRFSGFRQ 224 (434) T ss_pred EeeccccccccccccceecccccccccCCCCccceEEeccCCCcCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcchh Confidence 1100000 000 00011222 2 34454442 36899999988888888877544332221111111 Q ss_pred hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeec---ccCChHHHHHHHHHHHHhhhc Q lcl|Aclame:pro 243 LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVT---SVADPTATYNVNLQTAAAGVD 319 (449) Q Consensus 243 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~---~lsgl~d~~~~~~~~iaaas~ 319 (449) +.+. + .++...... ..... .. ...+....+.+...++++.+..+. ++.+..+.+....+++|+.++ T Consensus 225 ~~i~-----G-~~~~~~~~~-~~~~~-~~---~~~~~~~~~~i~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~~~ 293 (434) T protein:vir:98 225 KWIK-----G-HKFAKRTDP-ATGMT-VV---DQPFVPSPSAVWASEGENTQFGQLDATDLSGFLKEHASDVRDMLTISQ 293 (434) T ss_pred hhhc-----C-CCccccccc-ccccc-hh---hhhhhccccccccCCCCCceEEEecCcchHHHHHHHHHHHHHHhcccC Confidence 1111 0 000000000 00000 00 011112233344444555444443 445566677778999999999 Q ss_pred CCceeeeccCccccccch----hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC--CCceEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 320 IPTRILIGNQQAERSSTE----DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV--AKKAVIWDDLNEQTGTEKLT 393 (449) Q Consensus 320 IP~t~L~Gqs~gg~~s~e----D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~--~~~~~~f~pL~~~sekE~Ae 393 (449) +|...|-|. ..+.|+. -....-..++.+|..+.+.+.+++. |+..-.|..+ .++.+.|.|-...|..+.|+ T Consensus 294 ~p~~~~~~~--~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~r-l~~~~~g~~~~~~~~~v~w~~~~~~s~~~~ad 370 (434) T protein:vir:98 294 TPTYLYATD--LVNISADTIGALDILHVAKVREHIASFSEGLESVLA-LAAAQAGVPEDYTEAEVRWANPAHVTMAVKAD 370 (434) T ss_pred CCHHHhccc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhheeeeEEecCCCCCCHHHHHH Confidence 997666543 1222322 2344555566666555555555554 3333233332 26889999999999998887 Q ss_pred HHHHHHHH-HH--HHHHcCCccccCHHHHHHHh-----------cCCCCCCCCCCCCCcchhhccccc Q lcl|Aclame:pro 394 NAKTMGEI-NQ--TMLGSGDNPAFSREEIRTAA-----------GYDNDDEEPLGEEDGDEEDKATDS 447 (449) Q Consensus 394 i~~~~A~a-~~--~~~~~g~~~~~~~~e~r~~~-----------~~~~~~~~~~~~~~~~ee~~~~~~ 447 (449) ...+...+ .. .+... . -++++|++... ...+.-.++....+++++ .+.+- T Consensus 371 a~~kl~~~g~~~e~~~~~--l-g~~~~e~~r~~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~dg 434 (434) T protein:vir:98 371 AATKLKSIGYPLDVIAEE--L-DESPARVRRIVAGAASQALLAASLLPAPGAPSAGNVPDSG-GAVDG 434 (434) T ss_pred HHHHHHhcCCcHHHHHHh--C-CCCHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccc-CCCCC Confidence 66554433 11 11111 1 12333332110 111111111121222211 11111 No 111 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=99.09 E-value=1.7e-09 Score=68.61 Aligned_cols=402 Identities=8% Similarity=0.003 Sum_probs=168.9 Q ss_pred Cc------hhhHHHH--HhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhH Q lcl|Aclame:pro 1 MT------DKLTLAV--NHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLV 72 (449) Q Consensus 1 ~~------~~~~~~v--~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa 72 (449) |. .++-... .+..+-.+... ...+..+.--+-..+++.+...-...... ..-....+++.|||..+ T Consensus 18 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~-~~~YY~g~~~i~~~~~~~~~~~~~~~~~~-----~~ri~~n~~~~ivd~~~ 91 (472) T protein:vir:93 18 TNNKPETLEEMIVRYIKQHLEKLPEISI-GQEYYEQRPDIVKEPKPVDATGAVDPLKP-----DDRMITNFHANLVDQKV 91 (472) T ss_pred ecCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHhccccccccccchhhcccccccccc-----ccccccchHHHHHHHHh Confidence 11 1111000 11111011111 01111111000011111111100000000 00013589999999999 Q ss_pred HHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccC----- Q lcl|Aclame:pro 73 GKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGR----- 146 (449) Q Consensus 73 ~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~----- 146 (449) .=++-+++++...++. .. ..++.++..++..++.++.+.+..||.|++++..++ |...-..+++.. T Consensus 92 ~~l~g~~~~~~~~d~~-~~-------~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~d~~~~i~~~~p~~~~~i~ 163 (472) T protein:vir:93 92 SYIVGKPIAFKHTDDE-VV-------KRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIW 163 (472) T ss_pred hhhcccCeeeccCChH-HH-------HHHHHHHhccHHHHHHHHHHHHhhcCeEEEEEEECCCCceEEEEEcccceEEEE Confidence 9999999988544322 11 223333334566677777777888999999998853 222212222211 Q ss_pred ------ceeeEEEeccccCChhhhhccccccccCCc---eeEEeeecc----cCCCccceEEc----c-ce--eeeccCC Q lcl|Aclame:pro 147 ------GLQKVSVSWAGSLKVAEWDTGINSKTYGQP---KLWKYTERL----PNGSSRRVDIH----P-DR--VFILGDY 206 (449) Q Consensus 147 ------~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P---~~y~i~~~~----~~~~~~~~~IH----~-SR--li~~~~~ 206 (449) .+..+..+|... +-..-.++.| ..|...... .........+| . .+ ++.|.+ T Consensus 164 d~~~~~~~~~~ir~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n- 234 (472) T protein:vir:93 164 TDKEHEELEAFIRMYKLE--------NETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN- 234 (472) T ss_pred cCCCCCceEEEEEEEEee--------cceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecC- Confidence 111111111110 0000011111 122211000 00000111122 1 11 233333 Q ss_pred CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccccee Q lcl|Aclame:pro 207 SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLM 286 (449) Q Consensus 207 ~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 286 (449) ..+|.|.++++..-+..++.+....+..+...+...+.+. ++ ......+... .+ +..+.+. T Consensus 235 n~~g~s~~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~~~--------g~---~~~~~~~~~~----~~----~~~~~~~ 295 (472) T protein:vir:93 235 NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLT--------NY---DDQELPEFKR----LL----RYYGAIK 295 (472) T ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeEee--------cC---CcccchhhHH----HH----hhccccc Confidence 3468999998887777777765555443322222212111 11 0111111111 11 1222333 Q ss_pred ecCCCceEE--eecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh-HHH-H---HHHHHHHHHhhhHHHHH Q lcl|Aclame:pro 287 TTQGATVTP--LVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-QKY-F---NARCQSRRVDLSFEIED 359 (449) Q Consensus 287 ~~~~ed~~~--~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD-~~n-y---yd~I~~~Qe~~~~p~~~ 359 (449) ++++.+.+. .+.+.+++...++.+.+.|...+++|-.-+ + .-||+ ++++ ++. | ...++.+|..+...+.+ T Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~-~-~~~~n-~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~ 372 (472) T protein:vir:93 296 VSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSS-D-KFGSA-PSGVALEFLYTNLNLKADKLARKAKVAIQE 372 (472) T ss_pred cCCCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCCCCCCc-c-ccccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 455555444 466778999999999999999999995322 2 22333 3443 432 2 23333344334343444 Q ss_pred HHHHHHHHhcCCC--CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccC-H-HHHHHH--------hcCCC Q lcl|Aclame:pro 360 FCDKLIELKIIDA--VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFS-R-EEIRTA--------AGYDN 427 (449) Q Consensus 360 ~l~~l~~~~~~~~--~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~-~-~e~r~~--------~~~~~ 427 (449) +.+|+....+.. ..++.+.|+|-...++++.|++..+.+..++.-.-....+.++ + .|+... -.... T Consensus 373 -~~~li~~~~~~~~~~~~i~v~f~~~~p~~~~~~~~~~~k~~giis~et~l~~l~~~~d~~~E~~ri~~E~~~~~~~~~~ 451 (472) T protein:vir:93 373 -LLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPN 451 (472) T ss_pred -HHHHHHHHhCCCcccceeeEEeCCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhccC Confidence 444443333322 3478999999999999999998888665433221111122222 2 233211 01111 Q ss_pred CCCCCCCCCCcchhhcccccC Q lcl|Aclame:pro 428 DDEEPLGEEDGDEEDKATDSA 448 (449) Q Consensus 428 ~~~~~~~~~~~~ee~~~~~~~ 448 (449) ......+...+++...+.++. T Consensus 452 ~~~~~~d~~~~~~~~~~~~~e 472 (472) T protein:vir:93 452 LDDGGADGAQQQERSNNKESE 472 (472) T ss_pred cCcccCCCCCCCCCCCcccCC Confidence 111111111111111122222 No 112 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=99.08 E-value=2.4e-09 Score=67.88 Aligned_cols=432 Identities=9% Similarity=-0.028 Sum_probs=197.8 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCH------------HHHHHHHHcCchhHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTY------------ENLYSLYRRGGIAHGAV 68 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~------------~~l~~~Y~~~~l~r~iV 68 (449) |.+....++.......-..+.+... ...-+..+......-+.|...+. .-...+++.|++++.+| T Consensus 1 m~~~~~r~~~~~a~~~~~~~~~~~~---~~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~lr~RaRdL~rNn~~a~~av 77 (553) T protein:vir:63 1 MTKVTVRKLSEVTSGRPEQSASLGG---GGLEGASRLSRETVSWNPSLRSPDALINPLKRIADARGRDMADNDGFTNGAV 77 (553) T ss_pred Ccchhhhhhcccccccchhhhhhhc---ccccccccCCCcccccccCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHH Confidence 7776665554322222111111111 11111111110000111222211 23467899999999999 Q ss_pred hhhHHHHhcCCcEEecC---------CChhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhccccccEEE Q lcl|Aclame:pro 69 EKLVGKCWQTNPEIIEG---------DDADDSEDETSWEKKSKQVFTN-----------RLWRSFAEADRRRLVGRYAGI 128 (449) Q Consensus 69 d~pa~d~~r~~~~i~~~---------~~~~~~~~~~~~e~~~~~l~~~-----------~~~~~~~ea~~~~rl~Gga~i 128 (449) +......+=.|++.... ++..+.+....+|+.++..... .+..-...+++.....|-+.+ T Consensus 78 ~~~~~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~ 157 (553) T protein:vir:63 78 GYQRDSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGYVKTGEVLA 157 (553) T ss_pred HHHHHhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHHHhCCceEE Confidence 99999999999887432 1122222333444444322110 111112223333334566655 Q ss_pred EEEecCCCcccccccccCceeeEEEeccccCChh--hhh-----ccccccccCCceeEEeeecccCCC------------ Q lcl|Aclame:pro 129 LLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVA--EWD-----TGINSKTYGQPKLWKYTERLPNGS------------ 189 (449) Q Consensus 129 ~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~--~~~-----~Dp~s~~yg~P~~y~i~~~~~~~~------------ 189 (449) .+..+...+..-|+ .|.+++...|... ..+ .-..=-.+|+|..|+|...-++.. T Consensus 158 ~~~~~~~~~~~~~~-------~lq~ie~drl~~~~~~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~~r 230 (553) T protein:vir:63 158 TAEWDRAANRPYAT-------CFQMVSTDRLSNPYQQLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYKWKF 230 (553) T ss_pred EeeeccCCCCcccc-------eEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEeeccCCCccccccccccceee Confidence 55443211111121 1223333333211 110 111112579999999975433321 Q ss_pred -ccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccCh Q lcl|Aclame:pro 190 -SRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSI 264 (449) Q Consensus 190 -~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 264 (449) .....|+.+.|+|+-.. -..|+|.|-++...+.+++.-..+ +++-+.....+..-++....-.......+.+. T Consensus 231 ~~~~~~v~a~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~da--eL~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~ 308 (553) T protein:vir:63 231 VQQSKPWGRRQVIHILEPREPDQSRGIADIVSGLKDMRMAKRFKEM--SLQNAVINASYAAAIESELPPEFIHSQMSGGS 308 (553) T ss_pred eccccccChhHheecccccCCCcccCCchHHHHHHHHHHHhHHHHH--HHHHHHHhhhheeeeecCCChhhhhhhccccc Confidence 01246888898887543 357999999999999888876543 33322211111111111111111111111000 Q ss_pred --HH-------HHHHH-----HHHHHHHhccccceeecCCCceEEeecc--cCChHHHHHHHHHHHHhhhcCCceeeecc Q lcl|Aclame:pro 265 --DE-------LQDKF-----NEVAGEINRGNDVLMTTQGATVTPLVTS--VADPTATYNVNLQTAAAGVDIPTRILIGN 328 (449) Q Consensus 265 --~~-------~~~~~-----~~~~~~~~~~~~~~l~~~~ed~~~~~~~--lsgl~d~~~~~~~~iaaas~IP~t~L~Gq 328 (449) .. ..... ......+.-|. ..-+..+++++..+.+ -++..++.......||+..|||.-.|.|- T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~-i~~L~pGe~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D 387 (553) T protein:vir:63 309 PNADMVGIFGKYMDALKAYVGGANNIQIDGAK-IPHLFPGTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRD 387 (553) T ss_pred ccccccccccccccccccccccccceeecCce-eeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhh Confidence 00 00000 00011122221 1223457888888775 46899999999999999999999999997 Q ss_pred Ccccc-ccc-hhHHHHHHHHHHHHHhh----hHHHHH-HHHHHHHHhcCCCCCCceEE--eCC---------CCCCCHHH Q lcl|Aclame:pro 329 QQAER-SST-EDQKYFNARCQSRRVDL----SFEIED-FCDKLIELKIIDAVAKKAVI--WDD---------LNEQTGTE 390 (449) Q Consensus 329 s~gg~-~s~-eD~~nyyd~I~~~Qe~~----~~p~~~-~l~~l~~~~~~~~~~~~~~~--f~p---------L~~~sekE 390 (449) -.+.+ +|. ..+..+...++.+|+.+ ++|+.+ +|+..+..+....|..+.-. +.| -|...-.+ T Consensus 388 ~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a~l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~ 467 (553) T protein:vir:63 388 FSKANYSSIQAGIAMTRRFLEGRKKMCADRLATEFFTLWLEEAIAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQG 467 (553) T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccchhhcchhhhhhhhceeeecCCcc Confidence 55544 332 36777888888888754 445543 44555555555555432100 001 12222222 Q ss_pred HHHHHHHHHHHHHHHHHcCCcc--------ccCHHHHH----------HHhcCCCCCCCC------CCCCCc-------c Q lcl|Aclame:pro 391 KLTNAKTMGEINQTMLGSGDNP--------AFSREEIR----------TAAGYDNDDEEP------LGEEDG-------D 439 (449) Q Consensus 391 ~Aei~~~~A~a~~~~~~~g~~~--------~~~~~e~r----------~~~~~~~~~~~~------~~~~~~-------~ 439 (449) -.| -.|.+++....+++|... -.+.+++. +..|+..+.+.. .+.+.. + T Consensus 468 ~iD-P~Ke~~A~~~~i~~G~~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (553) T protein:vir:63 468 QID-QLKETQAAVMRIDAGLSTYEREIARLGGDFRKSFAQRAREDALLKKYGLTFNLSAKRSLGDGRDAATGIAEDPAAA 546 (553) T ss_pred ccC-hHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCcccCCCCCCCCCCC Confidence 222 135567777777777321 11222221 112332221110 000000 0 Q ss_pred hhhcccc Q lcl|Aclame:pro 440 EEDKATD 446 (449) Q Consensus 440 ee~~~~~ 446 (449) ..+.+.| T Consensus 547 ~~~~~~e 553 (553) T protein:vir:63 547 QTSQQGE 553 (553) T ss_pred CcccccC Confidence 0111111 No 113 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=99.07 E-value=2.4e-10 Score=73.32 Aligned_cols=334 Identities=11% Similarity=0.111 Sum_probs=152.1 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) +++|+. .|.......++. ..+.. +... ..|.. ..+.+||+.+|+++-.-.+ T Consensus 3 if~~~~-----------------~~~~~~~~~~~~--~~~~~--~~~~-------~~~~~-~~v~~~v~~Ia~~iA~lp~ 53 (378) T protein:vir:94 3 LFGKVV-----------------SFSRGKLNNDTQ--RVTAW--QNEA-------VEYTS-AFVTNIHNKIANEITKVEF 53 (378) T ss_pred hhHHhH-----------------hhhhcccccCcc--eeeee--ecch-------hhhhh-HHHHHHHHHHHHhHhhCce Confidence 122221 000000001111 11111 1111 12333 4578899999999998887 Q ss_pred EEecCCChhhH--H----HHHHHHHHHHH-HHHHHHHHHHHHHHHhcc-ccccEEEEEEecCCCcccccccccCceeeEE Q lcl|Aclame:pro 81 EIIEGDDADDS--E----DETSWEKKSKQ-VFTNRLWRSFAEADRRRL-VGRYAGILLHIRDEKDWNLPATKGRGLQKVS 152 (449) Q Consensus 81 ~i~~~~~~~~~--~----~~~~~e~~~~~-l~~~~~~~~~~ea~~~~r-l~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~ 152 (449) .+......+.. . ....+...++. =....-...+.+.+.+.. +.|.|+++....|. T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~----------------- 116 (378) T protein:vir:94 54 NHVKYKKSDVGSDTLISMAGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSE----------------- 116 (378) T ss_pred eeeeecccccccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCC----------------- Confidence 65332211100 0 01111121210 000001122333333333 45767765433211 Q ss_pred EeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC--CCCcchhHHHHHHHHHHHHHHhhH Q lcl|Aclame:pro 153 VSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY--SEDAIGFLEPAYNAFVSLEKVEGG 230 (449) Q Consensus 153 v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~--~~~G~s~l~~~~~~l~~~~~~~~~ 230 (449) .|++..+... ..++.+.++.|+|+... ...+.+.++.....+...-+ T Consensus 117 --------------------~g~~~~~~~~-------~~~~~~~~~dvih~~~~~~~~~~~~~~~~~~~~~~~~~~---- 165 (378) T protein:vir:94 117 --------------------TGELLDLLFA-------NDKKEYKPEELVRLTSPFYINEDTSILDNALASIQTKLE---- 165 (378) T ss_pred --------------------CCcEEEEEEe-------cCcEEechhceeeecCcCCcccchhHHHHHHHHHHHHHh---- Confidence 1122111111 01345677788887532 12344555554443321111 Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc---cceeecCCCceEEeecccCChH-HH Q lcl|Aclame:pro 231 SGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN---DVLMTTQGATVTPLVTSVADPT-AT 306 (449) Q Consensus 231 ~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~ed~~~~~~~lsgl~-d~ 306 (449) ....+. .+++.... ......+..+++.+.+.....+. +.++++.+.+|+.++.+...++ +- T Consensus 166 ------~~~~~g-~l~~~~~l--------~~~~~~~~~e~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~~~~~~~ 230 (378) T protein:vir:94 166 ------QGKLRG-LLKINAFL--------DIDNTQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDE 230 (378) T ss_pred ------hCCccc-ceeeCCcC--------CHHHHHHHHHHHHHHHHHhhcccccccceeccCCceEEEccCChHHhhHHH Confidence 000010 01111100 11122334445554444333332 2466777889999987765432 33 Q ss_pred HHHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC-----------CC Q lcl|Aclame:pro 307 YNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA-----------VA 374 (449) Q Consensus 307 ~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~-----------~~ 374 (449) +.....+||.+.|||..+|.|. .++ ...+||.. .+.|+...+..-+-..+..+ .. T Consensus 231 ~~~~~~~Ia~~fgvPp~~l~g~------~~e~~~~~f~~~-------tl~P~~~~ie~~l~~~Ll~~~e~~~g~~~~~~~ 297 (378) T protein:vir:94 231 IDLIKSELLTGYFMNENILLGT------ATQEQQIYFYNS-------TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYE 297 (378) T ss_pred HHHHHHHHHHHhCCCHHHhcCC------chHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCChhHhhhhhhhcccc Confidence 4566789999999998888542 123 34455554 35666655554433333221 12 Q ss_pred CceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCC----------CCCCCCcchhhcc Q lcl|Aclame:pro 375 KKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEE----------PLGEEDGDEEDKA 444 (449) Q Consensus 375 ~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~----------~~~~~~~~ee~~~ 444 (449) ++.|.+.+|...|.+++++ ++.+++++| ++|++|+|+..+++|...- +.+.....+..+. T Consensus 298 ~~~f~~~~l~~~d~~~~~e-------~~~~~~~~G---~~t~NE~R~~~g~~p~~ggd~~~~~~n~~~~~~~~~~~~~~~ 367 (378) T protein:vir:94 298 RIIVDNQLFKFATLKELID-------LYHENINGP---IFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGNRK 367 (378) T ss_pred eeEeecchhhhcCHHHHHH-------HHHHHHhCC---CcCHHHHHHHhCCCCCCCCCeeeecccccchhcchhcccccC Confidence 4667888999999887665 555678887 9999999999999886331 1010110010111 Q ss_pred cccCC Q lcl|Aclame:pro 445 TDSAA 449 (449) Q Consensus 445 ~~~~a 449 (449) .++.. T Consensus 368 ~~~~~ 372 (378) T protein:vir:94 368 DVTST 372 (378) T ss_pred CCCCC Confidence 11111 No 114 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=99.06 E-value=2.1e-09 Score=68.21 Aligned_cols=402 Identities=8% Similarity=0.006 Sum_probs=170.6 Q ss_pred CchhhHHHH---------HhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhh Q lcl|Aclame:pro 1 MTDKLTLAV---------NHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKL 71 (449) Q Consensus 1 ~~~~~~~~v---------~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~p 71 (449) +.++...-+ .|...-.+... ...+..+.--+-..+.+.+...-........ --...+++.|||.. T Consensus 37 ~~~~~~~~~~~~i~~~i~~~~~~~~r~~~-l~~YY~g~~~I~~~~~~~~~~~~~~~~~~~~-----ri~~n~~k~Ivd~~ 110 (492) T protein:vir:94 37 RTNNKPETLEEMIVRYIKQHLEKLPEISI-GQEYYEQRPDIVKEPKPVDATGAVDPLKPDD-----RMITNFHANLVDQK 110 (492) T ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccccccccccccccccccccccc-----ccccchHHHHHHHH Confidence 111111111 11111111111 1112211101111111111110000000000 01368999999999 Q ss_pred HHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccC---- Q lcl|Aclame:pro 72 VGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGR---- 146 (449) Q Consensus 72 a~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~---- 146 (449) +.=++.+++++...++. .. +.++.++..++..++.++.+.+-.||.|++++..+ +|...-..+++.. T Consensus 111 ~~yl~G~p~~~~~~d~~----~~----~~l~~~~~n~~~~~~~~~~~~a~~~G~a~~~v~~d~dg~~~~~~~~p~~~~~v 182 (492) T protein:vir:94 111 VSYIVGKPIAFKHTDDE----VV----KRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPI 182 (492) T ss_pred HhhhcccCceeccCchH----HH----HHHHHHHhccHHHHHHHHHHHHhhCCeEEEEEEecCCCceEEEEEcccceEEE Confidence 99999999987554322 11 22333333456667778888888999999999885 3332222222211 Q ss_pred -------ceeeEEEeccccCChhhhhccccccccCC---ceeEEeeecc----cCCCccceEEcc----c-e--eeeccC Q lcl|Aclame:pro 147 -------GLQKVSVSWAGSLKVAEWDTGINSKTYGQ---PKLWKYTERL----PNGSSRRVDIHP----D-R--VFILGD 205 (449) Q Consensus 147 -------~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~---P~~y~i~~~~----~~~~~~~~~IH~----S-R--li~~~~ 205 (449) .+.....+|... +-..-.++- -.+|.+.... .........+|. = + |+.|.+ T Consensus 183 ~d~~~~~~~~a~ir~~~~~--------~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n 254 (492) T protein:vir:94 183 WTDKEHEELEAFIRMYKLE--------NETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN 254 (492) T ss_pred EcCCCCCceEEEEEEEeec--------cceeEEEEecCeEEEEEEecCeeeeccccccccccccccccCCCccceEEecC Confidence 111111112110 000001111 1122211100 000011112221 1 1 233332 Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccce Q lcl|Aclame:pro 206 YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVL 285 (449) Q Consensus 206 ~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (449) ..+|.|.++.+..-+..++.+....+..+...+...+.+. ++ .+....+....+ +....+ T Consensus 255 -n~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~--------g~---~~~~~~~~~~~~--------~~~~~~ 314 (492) T protein:vir:94 255 -NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLK--------NY---DDQELPEFKRLL--------RYYGAI 314 (492) T ss_pred -CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCceeeee--------cC---CcccchhhHHHH--------hhccce Confidence 3468888988877777777765555443322222212111 11 111111111111 112223 Q ss_pred eecCCCc--eEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH----HHHHHHHHHHhhhHHHHH Q lcl|Aclame:pro 286 MTTQGAT--VTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY----FNARCQSRRVDLSFEIED 359 (449) Q Consensus 286 l~~~~ed--~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n----yyd~I~~~Qe~~~~p~~~ 359 (449) .++++.+ |-..+.+.+++...++.+.+.|...+++|-.-. ..-||+.|+.=++. -...++.+|..+...+.+ T Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~--~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~ 392 (492) T protein:vir:94 315 KVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSS--DKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQE 392 (492) T ss_pred ecCCCCcceeEeccCCHHHHHHHHHHHHHHHHHHhCCcCCCc--cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3445544 444667778999999999999999999995321 22233333333332 233344444444444444 Q ss_pred HHHHHHHH-hcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCcccc-CH-HHHHHH-------h-cCCC- Q lcl|Aclame:pro 360 FCDKLIEL-KIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAF-SR-EEIRTA-------A-GYDN- 427 (449) Q Consensus 360 ~l~~l~~~-~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~-~~-~e~r~~-------~-~~~~- 427 (449) ++..++.. +.-....++.+.|+|-...++++.+++..+.+..++.-.-....+.+ ++ .|+... . .... T Consensus 393 ~~~li~~~~~~~~~~~~i~v~f~~~~p~~~~e~~~~~~kl~giiS~et~~~~l~~v~d~~~E~eri~~E~~~~~~~~~~~ 472 (492) T protein:vir:94 393 LLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNL 472 (492) T ss_pred HHHHHHHHhcCCcccceeeEEecCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccc Confidence 44333322 22223357899999999999999999888765433221111111222 22 233211 0 1111 Q ss_pred -CCCCCCCCCCcchhhcccc Q lcl|Aclame:pro 428 -DDEEPLGEEDGDEEDKATD 446 (449) Q Consensus 428 -~~~~~~~~~~~~ee~~~~~ 446 (449) ...+....+++++++++.| T Consensus 473 ~~~~~~~~~~~~~~~~~e~e 492 (492) T protein:vir:94 473 DDGGADSAQQQERSNNKESE 492 (492) T ss_pred ccccCCCCccccCCccccCC Confidence 1111112222222333333 No 115 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=99.06 E-value=4.8e-10 Score=71.67 Aligned_cols=413 Identities=14% Similarity=0.089 Sum_probs=195.3 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcc-------cCCHHHHHHHHHcCchhHHHHhhhHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPE-------LVTYENLYSLYRRGGIAHGAVEKLVG 73 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~-------~~~~~~l~~~Y~~~~l~r~iVd~pa~ 73 (449) |+++--.+....... ...+..+-.. +.+ .+-..+..++ +. ..-..-...+|+.|++++.+|+.... T Consensus 3 ~~~~~~~a~~~~~~~---~~~~~~y~aa--~~~-~~~~~~~~~s-~d~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~~ 75 (495) T protein:vir:10 3 MTPSGYQSLASGLLV---PVGASAYEGA--SGG-HRWQDIGDYG-PDTAVASGIQTLRARSHHNVRNNPWATNAVATWVA 75 (495) T ss_pred cccccccccchhhhh---HHHhhhhhcc--ccC-cccCCCCCCC-hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH Confidence 777755444332211 1111122111 111 1111111111 11 00112356789999999999999999 Q ss_pred HHhcCCcEEecCCChhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccccccEEEEEEecC-CCccccccccc Q lcl|Aclame:pro 74 KCWQTNPEIIEGDDADDSEDETSWEKKSKQVFT-------NRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKG 145 (449) Q Consensus 74 d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~-------~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~ 145 (449) ..+=.|++..... ++.+....+|+.++..-. ..+..-...+.+.-..-|-+.+.+.... +....-|+ T Consensus 76 ~vVG~Gi~p~~~~--~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g~~~~~--- 150 (495) T protein:vir:10 76 AAVGNGLTPRWRM--KEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGLSVPL--- 150 (495) T ss_pred hhcCCCcccccCC--chHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCCCccce--- Confidence 9988888764432 233333444444433221 0122222223333333455555554421 11111121 Q ss_pred CceeeEEEeccccCC-hhhh---------hccccccccCCceeEEeeecccCC------CccceEEccceeeeccCC--- Q lcl|Aclame:pro 146 RGLQKVSVSWAGSLK-VAEW---------DTGINSKTYGQPKLWKYTERLPNG------SSRRVDIHPDRVFILGDY--- 206 (449) Q Consensus 146 ~~l~~i~v~~~~~i~-~~~~---------~~Dp~s~~yg~P~~y~i~~~~~~~------~~~~~~IH~SRli~~~~~--- 206 (449) .|.+++...|+ +... ..-..--.+|+|..|+|...-++. ....+.|-.++|+|+... T Consensus 151 ----~lqliepd~l~~~~~~~~~~~g~~i~~GIe~d~~Gr~vaY~i~~~hpgd~~~~~~~~~~~rvpA~~vlH~f~~r~g 226 (495) T protein:vir:10 151 ----QLQIIEPDMLASDIPDETLPSGGYVKGGIRFSNGGKRKAYCFYRNHPAESSLIGDPVDTVWIKAEHVLHVTVLTVR 226 (495) T ss_pred ----EEEEechhhcCCCCCCCCCCCCCEEEeceEECCCCceEEEEEeecCCCcccccccccceeeechhheEeccccCCC Confidence 12233333332 1110 011111257999999997554432 123467888888887532 Q ss_pred CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccccee Q lcl|Aclame:pro 207 SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLM 286 (449) Q Consensus 207 ~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 286 (449) -..|+|++-++. .+.+++.... ++++-+.....+...++....-.......+....+. -......+..+. ..- T Consensus 227 Q~RGis~la~i~-~l~~l~~y~d--ael~~a~i~A~~~~fi~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~pG~-i~~ 299 (495) T protein:vir:10 227 SDAGAPWFQLLL-RLNELDQYED--AELVRKKTAALFAAFIQEATADSTGGPTIGQPKRSK---GGKRITGLNPGT-LQY 299 (495) T ss_pred cccCcchhHHHH-HHHHhhHHHH--HHHHHHHHhhhheeeeecCCCccccccccCcccccc---CcccceecCCce-eee Confidence 245999998765 4777666544 333322222222111111110000000000000000 000111222222 223 Q ss_pred ecCCCceEEeecc--cCChHHHHHHHHHHHHhhhcCCceeeeccCccccccc--hhHHHHHHHHHHHHHh-----hhHHH Q lcl|Aclame:pro 287 TTQGATVTPLVTS--VADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSST--EDQKYFNARCQSRRVD-----LSFEI 357 (449) Q Consensus 287 ~~~~ed~~~~~~~--lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~--eD~~nyyd~I~~~Qe~-----~~~p~ 357 (449) +..+++++.++.+ -++..+........||+..|||.-.|.|--.+.+=|+ .-+..+...+++.|.. +.+|+ T Consensus 300 L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~Ye~ltgD~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~~pi 379 (495) T protein:vir:10 300 LQPGQEVKFSNPADVGTTYEPWLRYQLLSIAKGYGITYEMLTGDLRGVNYSSIRAGLLEFRRLCQQVQHHMIIHQFCRPV 379 (495) T ss_pred cCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 4568889998865 4689999999999999999999999999766554333 3677777888887753 34676 Q ss_pred HH-HHHHHHHHhcCCCCCCc-------eEEe--CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCcc--------ccCHHHH Q lcl|Aclame:pro 358 ED-FCDKLIELKIIDAVAKK-------AVIW--DDLNEQTGTEKLTNAKTMGEINQTMLGSGDNP--------AFSREEI 419 (449) Q Consensus 358 ~~-~l~~l~~~~~~~~~~~~-------~~~f--~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~--------~~~~~e~ 419 (449) .+ +|+..+..+....|+.+ ..+| +..-..+. .|.+++....+++|... -.+.+|+ T Consensus 380 ~~~~l~~a~l~G~i~~p~~~~~~~~~~~~~w~~p~~~~vDP-------~Ke~~A~~~~i~~G~~s~~~~~a~~G~D~~~v 452 (495) T protein:vir:10 380 GRWFMDFAVASGAVVIPDYLQRRRYYNRVSWRTPRWEEVDP-------LKKHLADLGDVRAGFAPISDKQAERGYDMEEL 452 (495) T ss_pred HHHHHHHHHHcCCCCCCCchhhhHhhhccccccCCccccCh-------HHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHH Confidence 65 56666666666655432 2334 22222333 34566777777777321 1222222 Q ss_pred H----------HHhcCCCCCCC---------CCCCCCcchhhc Q lcl|Aclame:pro 420 R----------TAAGYDNDDEE---------PLGEEDGDEEDK 443 (449) Q Consensus 420 r----------~~~~~~~~~~~---------~~~~~~~~ee~~ 443 (449) . +..|+..+.+. ..+.+++.+.++ T Consensus 453 ~~q~a~e~~~~~~~Gl~~~~~p~~~~~~~~~~~~~~~~~~~~e 495 (495) T protein:vir:10 453 FDMISDANQLIDEYDLRLDSDPRYVNGSGAEQKSVMEAALNNE 495 (495) T ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCCccCCCCCCCCCCCCCC Confidence 1 11233221110 001111111111 No 116 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=99.06 E-value=5.4e-10 Score=71.38 Aligned_cols=336 Identities=10% Similarity=0.019 Sum_probs=155.3 Q ss_pred HHHHHHHhhcCcccccc-hh------ccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHH Q lcl|Aclame:pro 23 MGLMVPTMGLDNKRHSA-WC------EYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDET 95 (449) Q Consensus 23 ~~~~~~~~g~~t~r~~~-~~------~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~ 95 (449) |++.|.--...+..+.. +. .......++... + .++.-+..+|++.+++.-...+. . .. . T Consensus 1 M~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~---a-l~~~av~~cv~~ia~~ia~~p~~--~--~~----~-- 66 (359) T protein:vir:10 1 MSILNPFERRSSITPNNYYPFMVQNGSIVPNSLVDATE---A-LKNSDLYAVTSLISSDIAGTRFI--G--NQ----V-- 66 (359) T ss_pred CcccchhhccccCCCCcchhhhhccccccCCcccCHHH---h-hcchHHHHHHHHHHHhhhcCccc--c--ch----H-- Confidence 22222110001100100 00 011122344332 2 23445678999999987655432 1 01 0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccC Q lcl|Aclame:pro 96 SWEKKSKQVFTNRLWRSFAEADR-RRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYG 174 (449) Q Consensus 96 ~~e~~~~~l~~~~~~~~~~ea~~-~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg 174 (449) +...+.+=....-...+.+.+. .-.|+|-|++++.- ++.. .+..+.++....+++. ... + T Consensus 67 -~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r-~~~g---------~~~~l~~l~~~~v~i~-~~~-------~ 127 (359) T protein:vir:10 67 -FTSVLNNPSHLTNAFSFWQTAILNLLLNGNVFLAILK-GDNS---------LMKELRLIPSNAITID-LTD-------D 127 (359) T ss_pred -HHHHhhcccccCCHHHHHHHHHHhccccCceEEEEEE-CCCC---------eEEEEEEeCCceEEEE-EcC-------C Confidence 1111111110011112223333 23466777776643 2221 1222333333322221 111 1 Q ss_pred CceeEEeeecccCCCccceEEccceeeeccCC--------CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhh Q lcl|Aclame:pro 175 QPKLWKYTERLPNGSSRRVDIHPDRVFILGDY--------SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVN 246 (449) Q Consensus 175 ~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~--------~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~ 246 (449) ...|+|... ..+....++++.|+||... ...|.|.++.+...+.....+....+ .++++..+. T Consensus 128 -~~~y~~~~~---~~~~~~~~~~~evih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~-~~f~ng~~~---- 198 (359) T protein:vir:10 128 -TLTYEVNQF---DDYPSAKYNASEMIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSL-STLKGALNP---- 198 (359) T ss_pred -eEEEEEEec---CCceEEEEcccceEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCc---- Confidence 134555422 1234577899999998532 23488888888776655444433322 233332221 Q ss_pred hhhhhhHHHHHhhh-ccChHHHHHHHHHHHHHHhcccc---ceeecCCCceEEeecccCC--hHHHHHHHHHHHHhhhcC Q lcl|Aclame:pro 247 FEKEIDFTNLASLY-GVSIDELQDKFNEVAGEINRGND---VLMTTQGATVTPLVTSVAD--PTATYNVNLQTAAAGVDI 320 (449) Q Consensus 247 ~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~ed~~~~~~~lsg--l~d~~~~~~~~iaaas~I 320 (449) ..+.... +...++..+++.+......++.+ .++++++.+|+.++.+... +-+......+.||.+.+| T Consensus 199 -------~gil~~~~~~l~~e~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgV 271 (359) T protein:vir:10 199 -------TSVVKVPQGTLSSEAKDSIRKEFEKANGGNNSGRVMVLDQSADFSTVSINADVANYLNSMNWGRTQIAKAFGV 271 (359) T ss_pred -------ceEEEeCCCCCCHHHHHHHHHHHHHHhCccccCCceecCCCcceeeecCCHHHHHHHHHHHHHHHHHHHHhCC Confidence 1111111 12234555556655555544432 3566777889988765443 345666778899999999 Q ss_pred CceeeeccCccccccc-hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 321 PTRILIGNQQAERSST-EDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMG 399 (449) Q Consensus 321 P~t~L~Gqs~gg~~s~-eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A 399 (449) |-..|-|. +..+++ +..+.+|.. ..+ ..+.|+.+.+..-+... +.+....+...+.... . T Consensus 272 Pp~~lg~~--~~~~~~~~~~e~~~~~--~l~-~~l~p~~~~l~~~l~~~-------~~~~~~~~~~~d~~~~-------~ 332 (359) T protein:vir:10 272 SDSYLNGT--GDQQSSLDQIKDLYVN--ALN-RFIEPLISELRIKCDSS-------IGVDMSPITDYSNSVF-------K 332 (359) T ss_pred CHHHhCCC--CcccccHHHHHHHHHH--HHH-HHHHHHHHHHHHHhhhh-------hcccchhhhhcCHHHH-------H Confidence 98776332 222222 233333311 111 12345444444322211 1222222333332221 2 Q ss_pred HHHHHHHHcCCccccCHHHHHHHhcCCCCC Q lcl|Aclame:pro 400 EINQTMLGSGDNPAFSREEIRTAAGYDNDD 429 (449) Q Consensus 400 ~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~ 429 (449) ..+.+++++| ++|++|+|+..+++|.. T Consensus 333 ~~~~~~~~~G---~~t~NE~R~~l~~~pv~ 359 (359) T protein:vir:10 333 ADILNWVKEG---IIEPTEAKTLLESKGII 359 (359) T ss_pred HHHHHHHhCC---CcCHHHHHHHhCCCCCC Confidence 2345577887 89999999999999988 No 117 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=99.06 E-value=3.4e-09 Score=67.00 Aligned_cols=402 Identities=11% Similarity=-0.018 Sum_probs=159.6 Q ss_pred CchhhHHH-------------HHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHH Q lcl|Aclame:pro 1 MTDKLTLA-------------VNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGA 67 (449) Q Consensus 1 ~~~~~~~~-------------v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~i 67 (449) |+.-|... -.+.....+..+ ...+.. |. +.. .. .+.. -..++.+......++++| T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rl~~-l~~Yy~-----G~--~~i-~~--~~~~-~~~~~~~~~~~~n~~~~i 68 (484) T protein:vir:77 1 MTSPLQKQENVDPEKAREEMLNLFTERTQDLGD-NTAYYE-----SE--RRP-DA--VGVT-VPQQMQKLLAHVGYPRLY 68 (484) T ss_pred CCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHh-----cc--ccc-hh--cccc-cchhHHhhhhhcCcHHHH Confidence 33222211 000011111100 111111 10 000 00 1111 124455555667788999 Q ss_pred HhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCccc-----cc- Q lcl|Aclame:pro 68 VEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWN-----LP- 141 (449) Q Consensus 68 Vd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~-----~P- 141 (449) ||..++-+.=+|+++-+ + . +....+...+++ .++-....++.+-+..||-|++++..+.+.... .| T Consensus 69 vd~~~~~l~~~g~~~~~-~-~---~~~~~l~~i~~~---N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~~~~~ 140 (484) T protein:vir:77 69 IDAIAARQELEGFRLGG-A-D---KADEQLWDWWQA---NDLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDPEVPI 140 (484) T ss_pred HHHHHhhhccCceecCC-c-c---hhHHHHHHHHHh---cCHhHHHHHHHHHHhhcCceEEEEecCCCCcccccccccce Confidence 99999988778887521 1 1 111223233321 144455667777778899998888775322111 01 Q ss_pred ---ccccCceeeEEEecc--ccCChh-hhhccccccccCCce---------eEEeeecccCCCccc--eEEccce---ee Q lcl|Aclame:pro 142 ---ATKGRGLQKVSVSWA--GSLKVA-EWDTGINSKTYGQPK---------LWKYTERLPNGSSRR--VDIHPDR---VF 201 (449) Q Consensus 142 ---l~~~~~l~~i~v~~~--~~i~~~-~~~~Dp~s~~yg~P~---------~y~i~~~~~~~~~~~--~~IH~SR---li 201 (449) +++..- +-+++. ..+... .+..+ .+.+++. .|++... ++.... ..=|+-- |+ T Consensus 141 i~~~~p~~~---~~~~D~~~~~~~~a~~~~~~---~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~~~~g~vPvv 212 (484) T protein:vir:77 141 IRVEPPTNL---YAQIDPRTRQVMRAIRAIED---EEGNEVIGATLYLPNNTVIWNRE--DGQWVQVANVAHNLEMVPVI 212 (484) T ss_pred EEEecccee---EEEecCCCCceEEEEEEEEe---ecCCcEEEEEEEecCeEEEEEec--CCceEeeccccCCCCCcceE Confidence 111100 000000 000000 00000 0111111 1111110 111000 0113332 24 Q ss_pred eccCCC----CCcchhHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHH Q lcl|Aclame:pro 202 ILGDYS----EDAIGFLEP-AYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAG 276 (449) Q Consensus 202 ~~~~~~----~~G~s~l~~-~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 276 (449) .|.+++ .+|.|.+++ +..-+..++++.........-.+..++.+. ..+...+......+ .. T Consensus 213 ~f~N~~~~~~~~G~s~i~~~v~~L~Da~~~~~s~~~~~~~~~a~p~~~i~---G~~~~~~~~~~~~~----~~------- 278 (484) T protein:vir:77 213 PIPNRTRLSDLYGTTEITPELRSVTDAAARTLMLMQATAELMGVPQRLLF---GVKGEELGVDPETG----QT------- 278 (484) T ss_pred EeccccccCccCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh---CCCcchhccccccc----ch------- Confidence 444332 368887764 444344444443322221111111111110 00011110000000 00 Q ss_pred HHhccccceeecCCCceEEeecc---cCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHH----HHHHHHH Q lcl|Aclame:pro 277 EINRGNDVLMTTQGATVTPLVTS---VADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKY----FNARCQS 348 (449) Q Consensus 277 ~~~~~~~~~l~~~~ed~~~~~~~---lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~n----yyd~I~~ 348 (449) .+....+.++...+++....+.+ +.+..+.+.....++|+.+++|..-|-|.+ . +++++ =++. .-..++. T Consensus 279 ~~~~~~~~~~~~~~~~~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~-~-n~~Sg~Al~~~~~~l~~ka~~ 356 (484) T protein:vir:77 279 LFDAYLARILAFEDHESKAQQFSAAELRNFVDALDALDRKAAAYTGLPPYYLSFSS-E-NPASAEAIRSSESRLVKTVER 356 (484) T ss_pred hhhhhhhhhcccCCCCceeEeecCCChHHHHHHHHHHHHHHhcccCCCHHHhcccc-C-cchHHHHHHHHHHHHHHHHHH Confidence 11112222333344444433333 445666777788899999999987774333 2 23344 3333 2334444 Q ss_pred HHHhhhHHHHHHHHHHHHHhcC-CCC---CCceEEeCCCCCCCHHHHHHHHHHHHHHH------HHHHHcCCccccCH-- Q lcl|Aclame:pro 349 RRVDLSFEIEDFCDKLIELKII-DAV---AKKAVIWDDLNEQTGTEKLTNAKTMGEIN------QTMLGSGDNPAFSR-- 416 (449) Q Consensus 349 ~Qe~~~~p~~~~l~~l~~~~~~-~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a~------~~~~~~g~~~~~~~-- 416 (449) +|+.+.+.+.+++..++....+ ..+ .++.+.|.|...+|..+.|+...|.+++. .++... . -+++ T Consensus 357 k~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~gi~s~et~~~~--l-~~~~~~ 433 (484) T protein:vir:77 357 KNKIFGGAWEQAMRVAYKVMNGGDIPPEYYRMESIWRDPSTPTYAAKADAATKLYNNGQGVIPKERARID--M-GYSITE 433 (484) T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccccccceEEecCCCCCCHHHHHHHHHHHHhccCCCCCHHHHHhc--C-CCChhH Confidence 5544555555554433333222 222 25788999999999999998777766542 111111 1 1222 Q ss_pred -HHHHH---Hh------------cCCCC--CCCCCCCCCcchhhcccccCC Q lcl|Aclame:pro 417 -EEIRT---AA------------GYDND--DEEPLGEEDGDEEDKATDSAA 449 (449) Q Consensus 417 -~e~r~---~~------------~~~~~--~~~~~~~~~~~ee~~~~~~~a 449 (449) +|++. +. +..+. .+...+++++.+...+.+.+| T Consensus 434 ~~e~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (484) T protein:vir:77 434 REEMRKWDEEEQAQGLGLMGTMFGTDPSGGGNPDNPETPEPQPNPAEEAAA 484 (484) T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCcccccCCCccccCC Confidence 23321 11 11111 111222233333344444444 No 118 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=99.04 E-value=5.9e-10 Score=71.17 Aligned_cols=403 Identities=12% Similarity=0.076 Sum_probs=183.8 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcc-------cccchhccCC--cccC-CHH------HHHHHHHcCchh Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNK-------RHSAWCEYGF--PELV-TYE------NLYSLYRRGGIA 64 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~-------r~~~~~~~~~--~~~~-~~~------~l~~~Y~~~~l~ 64 (449) |+++|.-.|+.-++-+.. +..+.......+.. +-..|..++. +..+ .+. ....-..+..++ T Consensus 1 m~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~s~n~~ 77 (499) T protein:vir:80 1 MINQIIAGVKGVMRRMGL---LKSLKDVTDHKKVNANDEDYKYIDMWKRLYQGNYAEWHNLNYEHNGNPVNRRQLSMNLP 77 (499) T ss_pred ChhHHHHHHHHHHHHhcc---ccchhhhhcCCCCcCCHHHHHHHHHHHHHhcCCcchhhccccccCCCccccceeecchH Confidence 999999888876642211 11111110000000 0001111100 0000 000 000112345899 Q ss_pred HHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEecC-CCcc---- Q lcl|Aclame:pro 65 HGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIRD-EKDW---- 138 (449) Q Consensus 65 r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~---- 138 (449) +.||+..|.=++-+.++|..+++. ..+.+++++. .+++..+.+++..+-.+|++++.+.++. |... T Consensus 78 ~~iv~~~a~~l~~ep~~i~~~d~~--------~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v 149 (499) T protein:vir:80 78 KVTAKYMSKLLFNEKVKINIDDET--------AEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFA 149 (499) T ss_pred HHHHHHHHHhhhCCcceEeeCCHH--------HHHHHHHHHhhccHHHHHHHHHHHHhhcCcEEEEEEECCCCcEEEEEE Confidence 999999999999999888654422 1223444443 3588888899988899999999999963 2211 Q ss_pred --c--ccccccC-ceee---EEEeccccCCh-----hhhhccccccccCCceeEEeeeccc--------C---------- Q lcl|Aclame:pro 139 --N--LPATKGR-GLQK---VSVSWAGSLKV-----AEWDTGINSKTYGQPKLWKYTERLP--------N---------- 187 (449) Q Consensus 139 --~--~Pl~~~~-~l~~---i~v~~~~~i~~-----~~~~~Dp~s~~yg~P~~y~i~~~~~--------~---------- 187 (449) . -|+..+. .+.. +..+....... .++..+ +-..|+|..... | T Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~y~~lE~h~~~~~-------~~~~y~I~n~~~~~~~~~~lG~~v~l~~~~~ 222 (499) T protein:vir:80 150 TADCMYPLSNDSENVDECLIANSFHKNNKYYKLLEWNEWKGE-------KEEVYTVTTELYQSDDPNELGGKVSLKLLFN 222 (499) T ss_pred cCCceEEEEecCCCeEEEEEEEEEeecCeEEEEEEEEEeccc-------ceeeEEEEEEEEeccCccccCcccchhhhcc Confidence 1 1442222 2222 22111100000 001000 001233321110 0 Q ss_pred CCccceEE-cccee--eeccC--------CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHH Q lcl|Aclame:pro 188 GSSRRVDI-HPDRV--FILGD--------YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNL 256 (449) Q Consensus 188 ~~~~~~~I-H~SRl--i~~~~--------~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l 256 (449) .......+ +.+|. +.|.. ....|+|++..+.+.+..++.+....+.-+- ..-..+-+. ..+ T Consensus 223 ~~~~~~~~~~~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~-------~~~ 294 (499) T protein:vir:80 223 DIEPVVPLPSLTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFK-LGKKKVLVP-------SSF 294 (499) T ss_pred CcCCceeecCCCccceEeecCCccccccCCCccCCchHhhHHHHHHHHHHHHHHHHHHHH-hcccceecc-------hhh Confidence 00011112 23442 22211 2235999999999888888888666554331 111111010 111 Q ss_pred HhhhccChHHHHHHHHHHHHHHhccccceeecC---CCceEEeeccc--CChHHHHHHHHHHHHhhhcCCceeeeccCcc Q lcl|Aclame:pro 257 ASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQ---GATVTPLVTSV--ADPTATYNVNLQTAAAGVDIPTRILIGNQQA 331 (449) Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~ed~~~~~~~l--sgl~d~~~~~~~~iaaas~IP~t~L~Gqs~g 331 (449) .........+....+. ...+....+.... ...++..+..+ ....+.++.+..++...+|+|-.. ||...+ T Consensus 295 l~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~-fg~~~~ 369 (499) T protein:vir:80 295 VKTAVNLDGSTTQYFD----STDEAFFLYQGEQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGT-FTFDEN 369 (499) T ss_pred hhccCCCCCCcccCCC----cccceeeEeeccCCCCcCceeEecCcCChHHHHHHHHHHHHHHHHhcCCChhh-cCCCcc Confidence 1111111111001111 0011111111111 12366666554 346677888888999999999644 665555 Q ss_pred ccc-cch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh------c--CCCCCCceEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 332 ERS-STE---DQKYFNARCQSRRVDLSFEIEDFCDKLIELK------I--IDAVAKKAVIWDDLNEQTGTEKLTNAKTMG 399 (449) Q Consensus 332 g~~-s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~------~--~~~~~~~~~~f~pL~~~sekE~Aei~~~~A 399 (449) |.. +++ ....-|.++..+|..+...+.+++..++... . ...+.+++|.|+.-...++.+.++...+ T Consensus 370 g~~TAtei~s~~~~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~-- 447 (499) T protein:vir:80 370 GLKTATEVVSEKSETYQTKNSHSQLIEQGIKEMIVSILEVGKLIKAYDGDTVELDTITVDFDDSIAQDEDTTINRYTT-- 447 (499) T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccceEEEeCCCCCCCHHHHHHHHHH-- Confidence 543 455 4455677788888766555555554444221 1 1234579999999999998876655433 Q ss_pred HHHHHHHHcCCcc---------ccCHHHHHHHh---cCCCCCCCCCC---CCCcchh Q lcl|Aclame:pro 400 EINQTMLGSGDNP---------AFSREEIRTAA---GYDNDDEEPLG---EEDGDEE 441 (449) Q Consensus 400 ~a~~~~~~~g~~~---------~~~~~e~r~~~---~~~~~~~~~~~---~~~~~ee 441 (449) ++.+|.++ -.+.+|++++. .-+...+.+.+ ...+++| T Consensus 448 -----~~~~Gi~S~et~l~~~~~~~d~ea~~el~~i~~E~~~~~~~~d~~g~~ge~e 499 (499) T protein:vir:80 448 -----AKNQGMIPLKIALQRAWNITEAEADEWAEMLAKEKQAEIPNNDMTGIFGEEE 499 (499) T ss_pred -----HHHcCCCCHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCCccccCCCCC Confidence 33333221 22333333221 11111111111 1112222 No 119 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.03 E-value=2.5e-09 Score=67.71 Aligned_cols=409 Identities=10% Similarity=0.041 Sum_probs=193.1 Q ss_pred Cch---------hhHHHHHhhhHHHHHHHHHHHHHHHHhhcCccc-ccchhccCCcccCCH------------HHHHHHH Q lcl|Aclame:pro 1 MTD---------KLTLAVNHALNDARMARARMGLMVPTMGLDNKR-HSAWCEYGFPELVTY------------ENLYSLY 58 (449) Q Consensus 1 ~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r-~~~~~~~~~~~~~~~------------~~l~~~Y 58 (449) |.+ |.-..+ ... +....+.....-- +.++.| ...|. +.|...+. .-...+| T Consensus 1 ~~r~~~~~~~~dr~i~~~---~~~-~~~~~~~~~~~y~-aa~~~r~~~~w~--~~~~~~s~~~~i~~~~~~lr~RaRdL~ 73 (505) T protein:vir:96 1 MKRAEKKPSLAQRMVNWA---WYR-YVEPQKNAARAFE-AARRDRLGKAWL--RRASRLSADEEIYADLASLVQRAREQS 73 (505) T ss_pred CCCCccccchhhcccchh---hhh-hHHHHHHhhhhcc-cccCCCcccccc--CCCCCCChHHHHHHHHHHHHHHHHHHH Confidence 332 222111 100 1111122211111 112222 22231 11222222 2246789 Q ss_pred HcCchhHHHHhhhHHHHh-cCCcEEecCCChh----hHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhccccc Q lcl|Aclame:pro 59 RRGGIAHGAVEKLVGKCW-QTNPEIIEGDDAD----DSEDETSWEKKSKQVFTN---------RLWRSFAEADRRRLVGR 124 (449) Q Consensus 59 ~~~~l~r~iVd~pa~d~~-r~~~~i~~~~~~~----~~~~~~~~e~~~~~l~~~---------~~~~~~~ea~~~~rl~G 124 (449) +.|++++.+|+......+ -.|+.+....... +.+....+|+.++..-.. .+..-...+.+--...| T Consensus 74 rNn~~a~~av~~~~~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~dG 153 (505) T protein:vir:96 74 INNPYAKRFYQLLKNNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETLARDG 153 (505) T ss_pred hcChHHHHHHHHHHHHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHHhhCC Confidence 999999999999999998 4688765432211 222333344443322110 01111122333333346 Q ss_pred cEEEEEEecCCCcccccccccCceeeEEEeccccCChh--h-------hhccccccccCCceeEEeeecccCCC------ Q lcl|Aclame:pro 125 YAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVA--E-------WDTGINSKTYGQPKLWKYTERLPNGS------ 189 (449) Q Consensus 125 ga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~--~-------~~~Dp~s~~yg~P~~y~i~~~~~~~~------ 189 (449) -+.+.+...++.. .|+ .|.+++...|... . +..-..--.+|+|..|+|...-++.. T Consensus 154 E~f~~~~~~~~~~--~~~-------~lqliepd~l~~~~n~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~hPgd~~~~~~~ 224 (505) T protein:vir:96 154 EVLVREHRGYPNK--WGY-------ALQILECDRLDLNYNADLQNGNRIRMSIELDAWERPVAYHLLVNHPGDNSYCYHY 224 (505) T ss_pred ceEEEEeecCCCC--cce-------EEEEechhhcCCCCCcccCCcCeEEeceEECCCCceEEEEEeecCCCcccccccc Confidence 5555544433221 121 1233333333211 0 00111113579999999975443321 Q ss_pred --ccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccC Q lcl|Aclame:pro 190 --SRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVS 263 (449) Q Consensus 190 --~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 263 (449) .....|-.++|+|+... -..|+|.|-++...+.+++....+ +++-......+..-++. +.... +.. T Consensus 225 ~~~~~~rvpa~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~da--el~~a~i~A~~a~fi~~-----~~~~~-~~~ 296 (505) T protein:vir:96 225 AGQTYERVPADEIIHTFVPWRPHQNRGIPWTHASMVELHHIGEYRKS--EMIAAELGAKKVGFYEQ-----DPEAY-DQP 296 (505) T ss_pred ccccccccCHhHhhhhhcccCCccccCcchHHHHHHHHHHHhHHHHH--HHHHHHHhhhheeeeec-----CCccC-CCc Confidence 22345777778776542 356999999999999888876544 22211111111111111 11111 111 Q ss_pred hHHHHHHHHHHHHHHhccccceeecCCCceEEeecc--cCChHHHHHHHHHHHHhhhcCCceeeeccCcccc-ccc-hhH Q lcl|Aclame:pro 264 IDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTS--VADPTATYNVNLQTAAAGVDIPTRILIGNQQAER-SST-EDQ 339 (449) Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~--lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~-~s~-eD~ 339 (449) ..+... .....+..|. ..-+..+++++.++.+ -++..++.......||+..|||.-.|.|--++.+ +|. ..+ T Consensus 297 ~~~~~~---~~~~~l~pG~-i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iaaglgi~ye~lt~D~s~~nYSS~R~~~ 372 (505) T protein:vir:96 297 PEDDQG---EIVEEVEAGT-YQLLPYGIRFKEHKIDHPHTNFGAFVKSSLRGVAAGMGPAYNRLAHDLEGVNFSSLRSGE 372 (505) T ss_pred cccccC---ccccccCCce-eeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHH Confidence 110000 0112233333 2334568889988776 4689999999999999999999999999655544 332 367 Q ss_pred HHHHHHHHHHHHhh----hHHHHH-HHHHHHHHhcCCCCCC-----ceEEeC--CCCCCCHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 340 KYFNARCQSRRVDL----SFEIED-FCDKLIELKIIDAVAK-----KAVIWD--DLNEQTGTEKLTNAKTMGEINQTMLG 407 (449) Q Consensus 340 ~nyyd~I~~~Qe~~----~~p~~~-~l~~l~~~~~~~~~~~-----~~~~f~--pL~~~sekE~Aei~~~~A~a~~~~~~ 407 (449) ..+...++..|+.+ ++|+.+ +|+..+..+....|.. ....|. ..-..+. .|.+++....++ T Consensus 373 ~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~w~~p~~~~iDP-------~Ke~~a~~~~i~ 445 (505) T protein:vir:96 373 LDERDLYKLLQFFVVTELLERVAGNLISMSLLTQALPLNMVDIDRLSQYAFQPRGWDWVDP-------AKDSKAHSESIK 445 (505) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCccchhhceeeeccCCccccCh-------HHHHHHHHHHHH Confidence 77778888888754 456654 4555555555544421 123332 2222333 345666677777 Q ss_pred cCCccccCHHHH-H--------------------HHhcCCCCCCC--CCCCCCcchhhccccc Q lcl|Aclame:pro 408 SGDNPAFSREEI-R--------------------TAAGYDNDDEE--PLGEEDGDEEDKATDS 447 (449) Q Consensus 408 ~g~~~~~~~~e~-r--------------------~~~~~~~~~~~--~~~~~~~~ee~~~~~~ 447 (449) +| ..|.+++ + +..++.+.... .......++++.+.|. T Consensus 446 ~G---~~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~d~ 505 (505) T protein:vir:96 446 NR---TRSRSSIIRAAGDDPEDVFDEIAWEEQLMRDKGVNPTPPEQESKDATTDEEDDSASDD 505 (505) T ss_pred cC---CCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 77 3333222 1 12233222211 1111111222222222 No 120 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=99.01 E-value=5.7e-09 Score=65.77 Aligned_cols=385 Identities=9% Similarity=-0.007 Sum_probs=182.8 Q ss_pred CchhhHHHHHhhh--------HHHHHHHHHHHHHHHHhhc-CcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhh Q lcl|Aclame:pro 1 MTDKLTLAVNHAL--------NDARMARARMGLMVPTMGL-DNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKL 71 (449) Q Consensus 1 ~~~~~~~~v~~~~--------~~~~~~~~~~~~~~~~~g~-~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~p 71 (449) |+..|-..--..+ ...++...+..+.....++ -..++..... +..+.+-++.|. ++.-...++++- T Consensus 1 ~~~~i~~~~g~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~p~~~~il~~----~~~~~~~y~~m~-~D~~i~s~l~~R 75 (491) T protein:vir:79 1 MSKGLWVSPTEFVKFGEPDKSLSSQIATRARSIDFFALGMYLPNPDPVLKA----LGKDIRVYRELR-ADAHVGGCVRRR 75 (491) T ss_pred CCCeeeCCCCCcccccccchhHHHHHhhhccccccccccccCcchhHHHhh----ccCCHHHHHHHh-hChHHHHHHHHH Confidence 6665542221111 1122222233333222121 1222221111 112345555665 467777788888 Q ss_pred HHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCceee Q lcl|Aclame:pro 72 VGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRGLQK 150 (449) Q Consensus 72 a~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~l~~ 150 (449) -.-.+..-|+|..+.+++ +....++..++.+ . |..+...+-.+.+||+|++=+.-. ++..+ .+.. T Consensus 76 k~av~~~~w~i~~~~~~~--~~a~~i~e~l~~~---~-~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~--------~~~~ 141 (491) T protein:vir:79 76 KAAVKALEWGLDRGKAKS--RVAKSIADVFADL---D-LSRIATEMLDAVLYGYQPMEITWGKVGNYI--------VPID 141 (491) T ss_pred HHHHhCCCcEEecCCCCH--HHHHHHHHHHhcC---C-HHHHHHHHHHhhhhcceeEEEEEeecCCee--------eEEe Confidence 777777777886544322 1122233333322 2 333444444577899999876542 22111 1222 Q ss_pred EEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeecc----CCCCCcchhHHHHHHHHHHHHH Q lcl|Aclame:pro 151 VSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILG----DYSEDAIGFLEPAYNAFVSLEK 226 (449) Q Consensus 151 i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~----~~~~~G~s~l~~~~~~l~~~~~ 226 (449) |.+..+..+. .|+. +... |.. .++...+..+.+-+.+++. .+..+|.++++.||....--.. T Consensus 142 l~~r~~~~f~-----~d~~----~~l~-l~~----~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~ 207 (491) T protein:vir:79 142 VVGKPADWFV-----YDPE----NQLR-FRS----KEHWVQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKG 207 (491) T ss_pred eeeeccccee-----eccC----CceE-Eee----cCCCCCceeecCCCeEEEEecCCCCCcccchhHHHHHHHHHHHHh Confidence 3322221111 1221 2221 111 1122334566666666554 3456799999999986543333 Q ss_pred HhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeecc-cCC--- Q lcl|Aclame:pro 227 VEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTS-VAD--- 302 (449) Q Consensus 227 ~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~-lsg--- 302 (449) ...-++.-+-+...-....++ .....++..+.+.+.+..+.+. ..+++..+.+++.++.. -+| T Consensus 208 ~~~~w~~f~E~~G~P~~igky------------~~~a~~~ek~~l~~al~~~~~~-a~~viP~~~~ie~~ea~~~~g~~~ 274 (491) T protein:vir:79 208 GLKFWVQFTEKYGSPMLVGKH------------PRSASDAETNLLLDRLEDMVQD-AVAVIPDDSSIEIKEAAGKSGSAD 274 (491) T ss_pred hHHHHHHHHHHcCCCeEEEec------------CCCCCHHHHHHHHHHHHHHhcC-eEEEecCCceeEEEeccCCCCChh Confidence 333333222221111111111 1112344445555556666433 45777888899998776 344 Q ss_pred -hHHHHHHHHHHHHhhhcCCceeeeccC-----ccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCC Q lcl|Aclame:pro 303 -PTATYNVNLQTAAAGVDIPTRILIGNQ-----QAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAK 375 (449) Q Consensus 303 -l~d~~~~~~~~iaaas~IP~t~L~Gqs-----~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~ 375 (449) -..+++..-.+||-+ ++||. .|+.+.++ -.....+.+++....+..-+..++..|+...++..+ . T Consensus 275 ~y~~li~~~d~~Isk~-------iLGqtlTt~~~gs~a~~~vh~~v~~~i~~~D~~~i~~tln~li~~l~~~N~~~~~-~ 346 (491) T protein:vir:79 275 VYERLLHFCRGEVSIA-------LLGQNQTTEATSTRASAQAGLEVTDDIRDGDKAIVVEAMNMLIRWICDLNFDGAA-R 346 (491) T ss_pred HHHHHHHHHHHHHHHH-------HhhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-c Confidence 345566566676643 24542 22222222 234556666665555555555666667777665433 3 Q ss_pred ceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC--CCCCCcchhhcc-------cc Q lcl|Aclame:pro 376 KAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP--LGEEDGDEEDKA-------TD 446 (449) Q Consensus 376 ~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~--~~~~~~~ee~~~-------~~ 446 (449) +.|.|.. . .|..++.|++++++++.|. .++.+.+++..|++.+.... .+.........+ .+ T Consensus 347 p~f~~~e------~--ee~~~~~a~~~~~L~~~G~--~i~~~~~~e~~Gip~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 416 (491) T protein:vir:79 347 PVFDMWE------Q--EQVDEIQAGRDEKLTRAGA--RFTPAYFKRAYNLQDGDLDERPLPVSAVDAVGAASFAEFEAPD 416 (491) T ss_pred ceEeecC------c--CchhHHHHHHHHHHHhCCC--ccCHHHHHHHhCCCCCCCCccccCcCcccccccccccccCCCC Confidence 4555532 1 2445667899999999983 46889999999987653221 111000000000 00 Q ss_pred cCC Q lcl|Aclame:pro 447 SAA 449 (449) Q Consensus 447 ~~a 449 (449) ..+ T Consensus 417 ~~~ 419 (491) T protein:vir:79 417 QDA 419 (491) T ss_pred Ccc Confidence 000 No 121 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=99.00 E-value=6.8e-10 Score=70.86 Aligned_cols=329 Identities=12% Similarity=0.140 Sum_probs=144.6 Q ss_pred HHHHHHH-h----hcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHH--HHH Q lcl|Aclame:pro 23 MGLMVPT-M----GLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSE--DET 95 (449) Q Consensus 23 ~~~~~~~-~----g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~--~~~ 95 (449) |++.+-. . ...+.....+..++ + ..+..+..+.+||+.+|++.-.-.+.+......+... ... T Consensus 1 M~~f~k~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~~~~~~ 70 (378) T protein:vir:85 1 MNLFGKVVSFSRGKLNNDTQRVTAWQN--E--------AVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLIS 70 (378) T ss_pred CchhhhhhhhhhcccccCCcceeeeec--c--------chhhhhHHHHHHHHHHHHhHhhCceeEEEEeccccccccccc Confidence 2222210 0 00011111111110 1 1112345678899999999988888765332211100 000 Q ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhc Q lcl|Aclame:pro 96 SWEKKSKQVFTN---------RLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDT 166 (449) Q Consensus 96 ~~e~~~~~l~~~---------~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~ 166 (449) .....+.+|... .+|+.+.. .-.++|-|++++...+.. ..+.+.. T Consensus 71 ~~~~~l~~lL~~~PN~~~t~~~f~~~~~~---~lll~Gnayi~~i~~~~~---------g~~~~~~-------------- 124 (378) T protein:vir:85 71 MAGSDLDEVLNWSYKGEHNSMEFWQKVIK---KLLCTRYVDLYPIFDSET---------GELLDLL-------------- 124 (378) T ss_pred cccchHHHHHhccCCCCCCHHHHHHHHHH---HHhhcCCeEEEEeecCCC---------ceEEEEE-------------- Confidence 011112222211 13333222 224578788765443210 0111111 Q ss_pred cccccccCCceeEEeeecccCCCccceEEccceeeeccC-CCCC-cchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh Q lcl|Aclame:pro 167 GINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD-YSED-AIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLN 244 (449) Q Consensus 167 Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~-~~~~-G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~ 244 (449) .. ..++.+.++.++|+.. .... +.+.++...+.+.. . +++..-... T Consensus 125 --------------~~-------~~~~~~~~~dvih~~~~~~~~~~~~~~~~a~~~~~~---~--------~~~~~~~g~ 172 (378) T protein:vir:85 125 --------------FA-------NDKKEYKPEELVRLVSPFYINEDTSILDNALASIQT---K--------LEQGKLRGL 172 (378) T ss_pred --------------ec-------CCCEEEcccceEEEecCcCccchhhHHHHHHHHHHH---H--------HhcCCcceE Confidence 10 0122344445555542 1111 22333333222211 1 111100000 Q ss_pred hhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc---cceeecCCCceEEeecccCChH-HHHHHHHHHHHhhhcC Q lcl|Aclame:pro 245 VNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN---DVLMTTQGATVTPLVTSVADPT-ATYNVNLQTAAAGVDI 320 (449) Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~ed~~~~~~~lsgl~-d~~~~~~~~iaaas~I 320 (449) +++.... .....++..++++..+.....+. ..++++.+.+|+.++.+...++ +.+....++||.+.|| T Consensus 173 l~~~~~l--------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgV 244 (378) T protein:vir:85 173 LKINAFL--------DIDNTQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIELIKSELLTGYFM 244 (378) T ss_pred EEeCCcC--------CHHHHHHHHHHHHHHHHHhhcccccccceecCCCceEEeccCChhhhhHHHHHHHHHHHHHHhCC Confidence 1111100 01112333444444443333222 2456667789999877654433 2345556789999999 Q ss_pred CceeeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-----------CCceEEeCCCCCCCHH Q lcl|Aclame:pro 321 PTRILIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV-----------AKKAVIWDDLNEQTGT 389 (449) Q Consensus 321 P~t~L~Gqs~gg~~s~eD~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~-----------~~~~~~f~pL~~~sek 389 (449) |..+|-|. ++.+-..+||. ..+.|++..++.-+-..+..+. .++.|.+..|...|.+ T Consensus 245 Pp~~l~~s-----~~e~~~~~f~~-------~tL~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~f~~~~l~~~d~~ 312 (378) T protein:vir:85 245 NENILLGT-----ATQEQQIYFYN-------STIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLK 312 (378) T ss_pred CHHHhcCC-----chHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCChhhhhhhhhccccceeeecchhhhhcCHH Confidence 99888431 11123344543 2466766666654443333221 2356677788888888 Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCC----------CCCCCCcchhhcccccCC Q lcl|Aclame:pro 390 EKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEE----------PLGEEDGDEEDKATDSAA 449 (449) Q Consensus 390 E~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~----------~~~~~~~~ee~~~~~~~a 449 (449) +++ +++.++++.| ++|++|+|+..+++|...- +.++....+.....++.. T Consensus 313 ~~~-------~~~~~~~~~G---~~T~NE~R~~lgl~p~~gGD~~~~~~N~~~~~~~~~~~~~~~~~~~~ 372 (378) T protein:vir:85 313 ELI-------DLYHENINGP---IFTQNQLLVKMGEQPIEGGDIYIANLNAVAVKNLSDLQGSRKDVAST 372 (378) T ss_pred HHH-------HHHHHHHhCC---CcCHHHHHHHhCCCCCCCCCeEeecccccccccchhhcCccCCCCCC Confidence 665 5566777887 9999999999999886431 111111110000011111 No 122 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=98.99 E-value=7.6e-10 Score=70.59 Aligned_cols=404 Identities=11% Similarity=-0.055 Sum_probs=170.7 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) |=.... ..+..+..+.. .+..+ . + +..... ....... -....-...+++.||+..+.=++.+++ T Consensus 1 ~~~~~~-----~~~~~r~~~l~-~yy~g---~-~--~~~~~~---~~~~~~~-~~~~ki~~n~~~~ivd~~~~~l~g~~~ 64 (440) T protein:vir:95 1 MLAAFL-----GSQKQRLAILA-SYAQG---D-N--FSILSG---HRRLDDE-KADYRVRHKWGGYISSFATGYVIGNPV 64 (440) T ss_pred ChhhHH-----HHHHHHHHHHH-HHhcc---C-C--cccccc---ccccccc-CCcceeecchHHHHHHhhhhheeccCc Confidence 211111 11111211111 11111 1 0 000000 0000000 000112578999999999999999999 Q ss_pred EEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccCc-----------e Q lcl|Aclame:pro 81 EIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGRG-----------L 148 (449) Q Consensus 81 ~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~~-----------l 148 (449) ++...++.++ +....+..-+ ...++.....++.+.+..||.|++++..+. |...-..+++... + T Consensus 65 ~~~~~~~~~~-~~~~~l~~~~---~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~ 140 (440) T protein:vir:95 65 SIGVMEGGSA-DQLSTIKDIE---WQNDINALNSDLAFDASVYGRAYEYHFRDKDKVDRVVLISPLEMFVIRDLTVEQNI 140 (440) T ss_pred eEeeCCCccH-HHHHHHHHHH---HhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCce Confidence 9865443332 2222222211 122566778888899999999999998853 3222222222211 1 Q ss_pred eeEEEeccccCChhhhhccccccccCCc-eeEEeeecccC-CCc--cceEEcccee---eeccCCCCCcchhHHHHHHHH Q lcl|Aclame:pro 149 QKVSVSWAGSLKVAEWDTGINSKTYGQP-KLWKYTERLPN-GSS--RRVDIHPDRV---FILGDYSEDAIGFLEPAYNAF 221 (449) Q Consensus 149 ~~i~v~~~~~i~~~~~~~Dp~s~~yg~P-~~y~i~~~~~~-~~~--~~~~IH~SRl---i~~~~~~~~G~s~l~~~~~~l 221 (449) .....+|.. .+...-.++-| ..|+......+ +.. ....=|+-.. +.|.+ ..+|.|.++.+..-+ T Consensus 141 ~~~i~~~~~--------~~~~~~~vyt~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-~~~g~sd~e~v~~li 211 (440) T protein:vir:95 141 IAAVHLPIY--------ADKVNMTVYTKDKVITYKPYSNNSVRLVVDDVKKHSYNDVPVVEWWN-NRFRMGDYESEISLI 211 (440) T ss_pred EEEEEEEEe--------cCceEEEEEeCCeEEEEEEecCCccceeecceeeccCceeeEEEeeC-CCCCCCchhhhHHHH Confidence 111111110 00000111111 12211110000 000 0111244332 23333 456889999888877 Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceE--Eeecc Q lcl|Aclame:pro 222 VSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVT--PLVTS 299 (449) Q Consensus 222 ~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~--~~~~~ 299 (449) ..++.+....+..+...+...+.++ +.........+.........+............+.+.+++ ..+.+ T Consensus 212 da~~~~~s~~~~~~~~~~~~~~v~~--------g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~ 283 (440) T protein:vir:95 212 DAYDAGQSDTANYMSDLNDAMLLVK--------GDLDGIKLSPEDAAKMKDANMLFLKTGISTTGQQTTADASYIYKQYD 283 (440) T ss_pred HHHHHHHHHHHHHHHHhhcceeeee--------cccccCCCCccchhhhhhccceecccccccccCCCCcceeEEeecCC Confidence 7777776555544432222222221 1111111111111111111110000111111112233444 44566 Q ss_pred cCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh-HHH----HHHHHHHHHHhhhHHHHHHHHHHHHH-hc--CC Q lcl|Aclame:pro 300 VADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-QKY----FNARCQSRRVDLSFEIEDFCDKLIEL-KI--ID 371 (449) Q Consensus 300 lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD-~~n----yyd~I~~~Qe~~~~p~~~~l~~l~~~-~~--~~ 371 (449) ..++...++.+.+.|...+++|-. -++.- +++ .+++ ++. -...++.+|..+...+.+++..+... +. +. T Consensus 284 ~~~~~~~~~~l~~~i~~~s~~p~~-~~~~~-~~n-~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~ 360 (440) T protein:vir:95 284 VNGTEAYKNRLANDIHRFSRIPNL-DDDRF-NST-SSGIALLYKMIGLEQVRKDKETYFTKALRRRYELISNIHKAINGP 360 (440) T ss_pred HHHHHHHHHHHHHHHHHHhCCccc-ccccc-ccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc Confidence 778999999999999999999963 22222 222 3343 332 23334444444444455444433322 11 11 Q ss_pred --CCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccC-HHHHHH---Hhc-CCCCCCCCCCCCCcchhhcc Q lcl|Aclame:pro 372 --AVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFS-REEIRT---AAG-YDNDDEEPLGEEDGDEEDKA 444 (449) Q Consensus 372 --~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~-~~e~r~---~~~-~~~~~~~~~~~~~~~ee~~~ 444 (449) ...++++.|++-...++++.|++..+.+..++.-.-....+-++ ++|+-. +.. ..+.......+.++. +.+ T Consensus 361 ~~~~~~v~i~f~~~~p~~~~~~ad~~~kl~g~iS~et~~~~l~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~--~~~ 438 (440) T protein:vir:95 361 VIEANKLTFTFHPNIPQDVWTEIKAYIEAGGEISQETLMENASFTDYKTEHSRILKQGGSSDLEIGQIVGDADVG--QAD 438 (440) T ss_pred ccccccceEEeCCCCCCCHHHHHHHHHHHhccCcHHHHHHhCCCCCcHHHHHHHHHHHHHhhhhHHhhccCCCCC--CcC Confidence 13468999999999999999999887654443211111122233 233221 110 000000001111111 111 Q ss_pred cc Q lcl|Aclame:pro 445 TD 446 (449) Q Consensus 445 ~~ 446 (449) .| T Consensus 439 ~e 440 (440) T protein:vir:95 439 TE 440 (440) T ss_pred CC Confidence 11 No 123 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=98.99 E-value=4.8e-09 Score=66.18 Aligned_cols=403 Identities=10% Similarity=-0.034 Sum_probs=154.7 Q ss_pred CchhhHHH----HHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHh Q lcl|Aclame:pro 1 MTDKLTLA----VNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCW 76 (449) Q Consensus 1 ~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~ 76 (449) |+-..... -.+.....+... ...+.. | ..+ . ... +.. -+.++.+.-....++++|||.+++-+. T Consensus 1 ~~t~~~~i~~L~~~~~~~~~r~~~-l~~Yy~---G---~~~-i-~~~--~~~-~~~~~~~~~~~~n~~~~ivd~~~~~l~ 68 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLE-AEAYRN---G---TRR-L-KTI--GIG-APPELAYLDVQPGWVATYLRTLSDRLD 68 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHh---c---ccc-c-ccc--ccc-cchhHhhhhhhcchHHHHHHHHHhhhc Confidence 55433311 122222122111 111221 1 111 1 001 111 122333333344578999999999888 Q ss_pred cCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCC-------cccccccccCcee Q lcl|Aclame:pro 77 QTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEK-------DWNLPATKGRGLQ 149 (449) Q Consensus 77 r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~-------~~~~Pl~~~~~l~ 149 (449) =+|+++. +++.. ...+...++ ..++..+..++.+.+..||.|++++.-++.. ..-.++++.. T Consensus 69 ~~g~~~~-~d~~~----~~~l~~i~~---~N~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~~i~~~~p~~--- 137 (480) T protein:vir:78 69 IEGFRIS-EDSEG----LEELWNWWQ---ANDLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIPLIRVESPLY--- 137 (480) T ss_pred cCceecC-CCchh----HHHHHHHHH---hcCHHHHHHHHHHHHhhcCceEEEEecCccccCCCCCeeEEEEEcccc--- Confidence 8887642 22111 112222222 1245566778888888999998888753211 1111122211 Q ss_pred eEEEecc----ccCChh-hh-h-cc----ccccccCCc-eeEEeeecccCCCcc----ceEE-cc-ce--eeeccCCC-- Q lcl|Aclame:pro 150 KVSVSWA----GSLKVA-EW-D-TG----INSKTYGQP-KLWKYTERLPNGSSR----RVDI-HP-DR--VFILGDYS-- 207 (449) Q Consensus 150 ~i~v~~~----~~i~~~-~~-~-~D----p~s~~yg~P-~~y~i~~~~~~~~~~----~~~I-H~-SR--li~~~~~~-- 207 (449) +.++|- .++... .+ . .| +....++.| ..|.+... .+.... ...+ |. .+ |+.|.+++ T Consensus 138 -~~~~~D~~~~~~~~~~i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~ 215 (480) T protein:vir:78 138 -MYAELDPRNTRRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRN-GGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRL 215 (480) T ss_pred -eEEEEcCCCccceEEEEEEEEeecCCCceEEEEEEeCCeEEEEEec-CCCccccccccccccCCCCCcceEEeeccccc Confidence 111110 011100 00 0 00 000111111 11111111 010100 1111 21 22 23444332 Q ss_pred --CCcchhHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccc Q lcl|Aclame:pro 208 --EDAIGFLEP-AYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDV 284 (449) Q Consensus 208 --~~G~s~l~~-~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (449) .+|+|.+++ +..-+..++++....+......+..++.+. +. ++...... .....+ . ...+. T Consensus 216 ~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~-----G~-~~~~~~~~---~~~~~~----~---~~~~~ 279 (480) T protein:vir:78 216 GNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVIS-----GV-TTDELTND---GENTTL----D---IYYGR 279 (480) T ss_pred CCccCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhh-----cC-Cccccccc---cccchh----h---hhhhh Confidence 468887764 544444555554433322211111111110 00 00000000 000111 1 11112 Q ss_pred eeecCCCceEEeec---ccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHH-HHH---HHHHHHHhhhHH Q lcl|Aclame:pro 285 LMTTQGATVTPLVT---SVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKY-FNA---RCQSRRVDLSFE 356 (449) Q Consensus 285 ~l~~~~ed~~~~~~---~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~n-yyd---~I~~~Qe~~~~p 356 (449) ++...+++.+..+. ++....+.+.....++|+.+++|...| |..+. +++++ =++. +.. .+..+|+.+.+. T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~-g~~~~-n~~Sg~Alk~~~~~l~~ka~~~~~~f~~~ 357 (480) T protein:vir:78 280 ILTLASEAAKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYL-SSSSE-NPASAEAIIATDSRIVKMAERKGRIFGGA 357 (480) T ss_pred hccCCCCCceEEecCccCHHHHHHHHHHHHHHHhcccCCChHHh-ccccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22223344333333 344566677788889999999998766 43333 33444 3332 333 233333334444 Q ss_pred HHHHHHHHHHHhcCCCC---CCceEEeCCCCCCCHHHHHHHHHHHHHHHHH------HHHcCCccccCHHHH---HH--- Q lcl|Aclame:pro 357 IEDFCDKLIELKIIDAV---AKKAVIWDDLNEQTGTEKLTNAKTMGEINQT------MLGSGDNPAFSREEI---RT--- 421 (449) Q Consensus 357 ~~~~l~~l~~~~~~~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~------~~~~g~~~~~~~~e~---r~--- 421 (449) +.+++..++.......+ ..+.+.|.+-..+|..+.|+...+.+++... +++. .-++++++ .+ T Consensus 358 l~~~~~l~~~~~g~~~~~~~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~---lg~~~d~~~~~~~~~~ 434 (480) T protein:vir:78 358 WERAMRIAMQIMGREVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARID---LGYTATQREQMRDWDK 434 (480) T ss_pred HHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHHhccccCCHHHHHhc---CCCCHhHHHHHHHHHH Confidence 55544443333222222 3578899999999999888776665543211 1111 11233222 11 Q ss_pred Hhc------CCC---CCCCCCCCCCcchh--hcccccCC Q lcl|Aclame:pro 422 AAG------YDN---DDEEPLGEEDGDEE--DKATDSAA 449 (449) Q Consensus 422 ~~~------~~~---~~~~~~~~~~~~ee--~~~~~~~a 449 (449) +.. +.. .+....++....+. +.....++ T Consensus 435 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (480) T protein:vir:78 435 QETEDMIDTLYSTTKAQADATPKPTVTETKTETQTSPSG 473 (480) T ss_pred HHHHHHHHHhhccccccCCCCCCCCCCCCCCccccccCC Confidence 100 000 11111111111111 11111111 No 124 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=98.98 E-value=2.2e-09 Score=68.07 Aligned_cols=406 Identities=11% Similarity=0.026 Sum_probs=180.8 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcc-------cccchhccCC--cccCCH-H------HHHHHHHcCchh Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNK-------RHSAWCEYGF--PELVTY-E------NLYSLYRRGGIA 64 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~-------r~~~~~~~~~--~~~~~~-~------~l~~~Y~~~~l~ 64 (449) |+++|...|+.-.+.... ...+-...-..+.. +-..|..++. +..+.. . ....-..+..++ T Consensus 1 m~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~n~~ 77 (496) T protein:vir:38 1 MINQIIAGVKGVMRRMGL---LKALKDVKDHKKVNANDEDYKYIDMWKRLYQGHYAEWHNLNYEHNGNPVNRRQLSMNLP 77 (496) T ss_pred ChhHHHHHHHHHHHHhcc---chhhHHHHhcCCCcCCHHHHHHHHHHHHHhcCCCchhhcchhccCCCccccceeecchH Confidence 999999888876642211 11111111011110 0011111110 111100 0 000111235789 Q ss_pred HHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEecC-CCcccc-- Q lcl|Aclame:pro 65 HGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNL-- 140 (449) Q Consensus 65 r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~-- 140 (449) +.||+..|.=++-+.++|..+++.. . +.+++++.. +++..+.+++..+-.+|++++.+.++. |...-. T Consensus 78 k~i~~~~a~~l~~~p~~i~~~d~~~----~----e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v 149 (496) T protein:vir:38 78 KVTAKYMSKLLFNEKVKINIDDKAA----E----EFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFA 149 (496) T ss_pred HHHHHHHhhhhhCCcceEeeCChHH----H----HHHHHHHhccCHHHHHHHHHHHHhhhCcEEEEEEEcCCCcEEEEEE Confidence 9999999999999999886644221 1 234444333 577888888888889999999999863 332111 Q ss_pred ------cccccC-ceeeEEEecc-ccCChh--------hhh-----------ccccccccCCceeEEeeecccCCCccce Q lcl|Aclame:pro 141 ------PATKGR-GLQKVSVSWA-GSLKVA--------EWD-----------TGINSKTYGQPKLWKYTERLPNGSSRRV 193 (449) Q Consensus 141 ------Pl~~~~-~l~~i~v~~~-~~i~~~--------~~~-----------~Dp~s~~yg~P~~y~i~~~~~~~~~~~~ 193 (449) |+..+. .+..+ +|.. ...... +++ ....+...|.|.-+. +...+...... T Consensus 150 ~~~~~~P~~~~~~~~~~~-~f~~~~~~~~~~y~~le~h~~~~~~~~I~~~~y~~~~~~~~g~~v~~~--~~~~~~~~~~~ 226 (496) T protein:vir:38 150 TADCMYPLSNDSENVDEC-VIANSFHKNNKYYTLLEWNEWQGDVYTVTTELYQSDDPNELGTKVSLT--LLFDDIEPVVP 226 (496) T ss_pred cccceEEEEecCCcEEEE-EEEEEEEeCCeEEEEEEEEEEeCceEEEEEEEEecCCccccCcccccc--cccccccccee Confidence 443222 22211 1111 000000 000 000011112211000 00000000011 Q ss_pred EEccceee--eccC--------CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccC Q lcl|Aclame:pro 194 DIHPDRVF--ILGD--------YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVS 263 (449) Q Consensus 194 ~IH~SRli--~~~~--------~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 263 (449) .-+.+|+. .|.. ....|+|.++.+.+-+..++.+....+.-+.....+.+ +. ..+....... T Consensus 227 ~~~~~~~~f~~~~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~~~~~i~---v~-----~~~l~~~~~~ 298 (496) T protein:vir:38 227 LPDFTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVL---VP-----SSFVKTAVNL 298 (496) T ss_pred ecCCCcceEEEecCCcccccccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhhccccee---cc-----hHHhhccCCC Confidence 11224432 1211 12459999999988888888876655543321111111 10 1111111111 Q ss_pred hHHHHHHHHHHHHHHhccccceee---cCCCceEEeeccc--CChHHHHHHHHHHHHhhhcCCceeeeccCccccc-cch Q lcl|Aclame:pro 264 IDELQDKFNEVAGEINRGNDVLMT---TQGATVTPLVTSV--ADPTATYNVNLQTAAAGVDIPTRILIGNQQAERS-STE 337 (449) Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~l~---~~~ed~~~~~~~l--sgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~-s~e 337 (449) ..+....+. ...+..-.... +....++.++..+ ......++.+.++++..+|+|-.. ||...+|.. +++ T Consensus 299 ~g~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~-f~~~~~g~~tAte 373 (496) T protein:vir:38 299 DGSTTQYFD----STDEAFFLYQGDQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGT-FTFDENGLKTATE 373 (496) T ss_pred CCccccCCC----CccceEEEeecCCCcccccceeeccccCHHHHHHHHHHHHHHHHHhhCCChhh-cCCCccccchHHH Confidence 111101010 00000001111 1123466666654 346777888889999999999654 776555554 444 Q ss_pred ---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------cCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 338 ---DQKYFNARCQSRRVDLSFEIEDFCDKLIELK--------IIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTML 406 (449) Q Consensus 338 ---D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~--------~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~ 406 (449) ....-+..+..+|..+.+.+.+++..++... ....+.+++|.|+.-...++.+.++...+ ++ T Consensus 374 i~~~~~~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~~~g~~~~~~~i~v~f~d~i~~d~~~~~~~~~~-------~~ 446 (496) T protein:vir:38 374 VVSEKSETYQTKNSHSQLIEQGIKEMIVSILEVGKFIEAYSGEVVELDTITVDFDDSIAQDEDTTINRYTN-------AK 446 (496) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEeCCCCCCCHHHHHHHHHH-------HH Confidence 3444667777777655555555544443221 11234578999999999998876665544 23 Q ss_pred HcCCc---------cccCHHHHHHHh-------cCCCCCCCCCCCCCcchh Q lcl|Aclame:pro 407 GSGDN---------PAFSREEIRTAA-------GYDNDDEEPLGEEDGDEE 441 (449) Q Consensus 407 ~~g~~---------~~~~~~e~r~~~-------~~~~~~~~~~~~~~~~ee 441 (449) .+|.+ +-++.+|++++. ....++++ .....+++| T Consensus 447 ~~GiiS~et~l~~~~~~~d~ea~~el~ri~~E~~~~~~~~d-~~~~~~~~e 496 (496) T protein:vir:38 447 NQGMIPLKIALQRAWNITEAEADEWAEMLAKEKQAEMPNND-MNGIFGEEE 496 (496) T ss_pred hcCCCCHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcccc-ccCCCCCCC Confidence 33422 122334433221 11111111 111111222 No 125 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=98.96 E-value=2.9e-09 Score=67.36 Aligned_cols=402 Identities=10% Similarity=0.034 Sum_probs=156.2 Q ss_pred Cchhh-HHHH------HhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHH Q lcl|Aclame:pro 1 MTDKL-TLAV------NHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVG 73 (449) Q Consensus 1 ~~~~~-~~~v------~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~ 73 (449) |+.+- +-.+ .+..+..+... ...+..+. .+-....... ..-..+.+...... .++++|||..++ T Consensus 9 l~~~~~~~~~~~~l~~~~~~~~~r~~~-~~~YY~g~------~~i~~~~~~~-~~~~~~~~~~~~~~-n~~~~iVd~~~~ 79 (479) T protein:vir:99 9 LSSEGLAKYLETKVFPKMNTECERLDD-FEAWTKNG------QEVPDLATRH-KNKEREVLQQLSRK-PWMGLMVNSFAQ 79 (479) T ss_pred CChhHHHHHHHHHHHHHHHHHhHHHHH-HHHHHhcC------Cccccccccc-CChhHHHHHHHhhc-CcHHHHHHHHHh Confidence 55432 1111 11111111111 11121111 1100000000 11112234444455 458999999999 Q ss_pred HHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEE Q lcl|Aclame:pro 74 KCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSV 153 (449) Q Consensus 74 d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v 153 (449) -+.=++|++ .++..... +...++. .++-....++.+.+..||-|++++.-+ .+. ..+.|...|.+ T Consensus 80 ~l~~~gf~~--~d~~~~~~----~~~i~~~---N~~d~~~~~~~~~a~~~G~af~~v~~~--~~~----~d~~g~~~i~~ 144 (479) T protein:vir:99 80 QLIVDGYRK--TGTNENAK----GWDTWRL---NQMDKQQFWLNRAVLTFGYAFIKVTSG--ISP----LDGTTVARIKC 144 (479) T ss_pred hcccccccC--CCchhhHH----HHHHHHh---cChhHHHHHHHHHHhhcCceEEEEecC--CCC----cCCCCceEEEE Confidence 887777654 22222211 1122221 123344556667777899887777521 000 00011111222 Q ss_pred eccccCChh------------hhhcc-ccccccCCceeEEeeecccCCCcc--ceEEcc-ce--eeeccCCC---CCcch Q lcl|Aclame:pro 154 SWAGSLKVA------------EWDTG-INSKTYGQPKLWKYTERLPNGSSR--RVDIHP-DR--VFILGDYS---EDAIG 212 (449) Q Consensus 154 ~~~~~i~~~------------~~~~D-p~s~~yg~P~~y~i~~~~~~~~~~--~~~IH~-SR--li~~~~~~---~~G~s 212 (449) +++.++.+- .+..+ ...-.|.-+..|.+-... ++... ...-|. -+ ++.|.+++ .+|.| T Consensus 145 ~~p~~~~~iydd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~g~s 223 (479) T protein:vir:99 145 IDPRDAFAIWEDPYWDEWPKYLLERQPNGQYWWWTEEDYSIFEFK-QGKFIYRETVSHDYGHIPFVRYVNVMDLRGVCYG 223 (479) T ss_pred echhheEEEecCCcccceeeEEEeecCceeEEEEecceEEEEEec-CCceeeccccccCCCCcceEEeecCCCcCcCCcc Confidence 211111110 00000 000111111111111111 11100 111232 23 24455442 46999 Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCc Q lcl|Aclame:pro 213 FLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGAT 292 (449) Q Consensus 213 ~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed 292 (449) .++++..-+..++++.......+...+..++.+. +. .+.. ..... ... +.-..+.++...+++ T Consensus 224 d~e~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~-----G~-~~~~--~~~~~--~~~-------~~~~~~~i~~~~~~~ 286 (479) T protein:vir:99 224 DVEPLVTVAKAIDKTGLDILLVQHHQSFQIRWAT-----GL-MLPE--GANAD--QEK-------MRFAQESMLISQNEK 286 (479) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhc-----CC-Cccc--ccccc--hhc-------cccccccceeecCCC Confidence 9999887777777664433222211111111110 00 0000 00000 000 111122233334444 Q ss_pred eEEee---cccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH-HH---HHHHHHHHhhhHHHHHHHHHHH Q lcl|Aclame:pro 293 VTPLV---TSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY-FN---ARCQSRRVDLSFEIEDFCDKLI 365 (449) Q Consensus 293 ~~~~~---~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n-yy---d~I~~~Qe~~~~p~~~~l~~l~ 365 (449) .+..+ .++....+.+.....++|+.++||.. .||.+ +++|+.=++. +. ..++.+|..+.+.+.+++..++ T Consensus 287 ~~~~q~~~~~~~~~~~~l~~~i~~i~~~t~~p~~-~~g~~--~n~Sg~Al~~~~~~l~~ka~~~~~~f~~al~~~~~l~~ 363 (479) T protein:vir:99 287 ASFGAIPAAPLDGLLNAYKESLLEFLALAQLPPH-IAGQI--VNVAADALAAGTRQTMQKLFEKQATWKASHNQTMRLVN 363 (479) T ss_pred ceEEEecccchHHHHHHHHHHHHHHhccCCCCHH-Hcccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 44433 34556667788888899999999975 67753 3333333333 22 2333333334444444444333 Q ss_pred HHhcCCCC---CCceEEeCCCCCCCHHHHHHHHHHHHHHH----HHHHHcCCccccCHHHHH---HHh-----------c Q lcl|Aclame:pro 366 ELKIIDAV---AKKAVIWDDLNEQTGTEKLTNAKTMGEIN----QTMLGSGDNPAFSREEIR---TAA-----------G 424 (449) Q Consensus 366 ~~~~~~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a~----~~~~~~g~~~~~~~~e~r---~~~-----------~ 424 (449) ...-+..+ -++.+.|.+...+|..+.|+...|.+++. ..++.. .+-++..++. +.. . T Consensus 364 ~~~~~~~~~~~~~i~~~w~~~~~~s~~~~ad~~~kl~~ag~is~et~l~~--l~gv~~~~~e~~~~~~~~~~~~~~~~~~ 441 (479) T protein:vir:99 364 KIEGRTEEATDLDFTITWQDVTIQSLAQFADAWAKMVESLKIPAEGVWDM--IPNLDQSTVNGWKEIYDREGDFGKYMRK 441 (479) T ss_pred HHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHH Confidence 33322222 25788999998999988777666644331 111111 1223433321 110 0 Q ss_pred C----CCCCCC--CCCCCCcch-hhcccccCC Q lcl|Aclame:pro 425 Y----DNDDEE--PLGEEDGDE-EDKATDSAA 449 (449) Q Consensus 425 ~----~~~~~~--~~~~~~~~e-e~~~~~~~a 449 (449) + ++.... +....+.++ .....++++ T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (479) T protein:vir:99 442 LQNGPDPAEQRGGPNGATNMQQANNKTGEPAS 473 (479) T ss_pred HhcccCcccccCCCCCCCCCCCCCCCCcchhc Confidence 1 111111 111111111 122223333 No 126 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=98.93 E-value=1.2e-08 Score=63.93 Aligned_cols=401 Identities=8% Similarity=0.011 Sum_probs=167.6 Q ss_pred Cchhh-H-HHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDKL-T-LAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~~-~-~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) .+.++ + +.-.|..+..+... ...+..+.--+-..+++.+.......... ..-....+++.||+..+.=++-+ T Consensus 44 ~~~~~i~~~i~~~~~~~~r~~~-l~~YY~g~~~i~~~~~~~~~~~~~~~~~~-----~~ri~~n~~k~Ivd~~~~yl~g~ 117 (492) T protein:vir:97 44 TLEEMIVRYIKQHLEKLPEISI-GQEYYEQRPDIVKEPKPVDATGAVDPLKP-----DDRMITNFHANLVDQKVSYIVGK 117 (492) T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHhcccCcccccccccccccccccccc-----ccccccchHHHHHHHHhhhhccc Confidence 11111 1 01111111111111 11121111000011111111100000000 00113688999999999999999 Q ss_pred CcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccC----------- Q lcl|Aclame:pro 79 NPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGR----------- 146 (449) Q Consensus 79 ~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~----------- 146 (449) ++++...++. .. ..++.++..++..++.++.+.+-.||.|++++..+ +|...-..+++.. T Consensus 118 p~~~~~~d~~----~~----~~l~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~d~dg~~~~~~~~p~~~~~i~d~~~~~ 189 (492) T protein:vir:97 118 PIAFKHTDDE----VV----KRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHE 189 (492) T ss_pred CceeccCchH----HH----HHHHHHHhccHHHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCC Confidence 9987554322 11 12333333455566777777788899999998885 3322111122111 Q ss_pred ceeeEEEeccccCChhhhhccccccccCC---ceeEEeeeccc----CCCccceEEcc-----ce--eeeccCCCCCcch Q lcl|Aclame:pro 147 GLQKVSVSWAGSLKVAEWDTGINSKTYGQ---PKLWKYTERLP----NGSSRRVDIHP-----DR--VFILGDYSEDAIG 212 (449) Q Consensus 147 ~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~---P~~y~i~~~~~----~~~~~~~~IH~-----SR--li~~~~~~~~G~s 212 (449) .+.....+|... +-..-.++. ..+|.+..... ........+|. .. ++.|.+ ...|.| T Consensus 190 ~~~~~vr~~~~~--------~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-n~~g~s 260 (492) T protein:vir:97 190 ELEAFIRMYKLE--------NETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-NDLEIS 260 (492) T ss_pred ceEEEEEEEeec--------cceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecC-CCCCCC Confidence 111111111110 000011111 12222211000 00001111211 11 233332 245888 Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCc Q lcl|Aclame:pro 213 FLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGAT 292 (449) Q Consensus 213 ~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed 292 (449) .++.+..-+..++.+....+..+...+...+.+. ++ .+....+... . + +....+.++++.+ T Consensus 261 d~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~~~--------g~---~~~~~~~~~~----~---~-~~~~~~~~~~~~~ 321 (492) T protein:vir:97 261 DIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLK--------NY---DDQELPEFKR----L---L-RYYGAIKVSDNGG 321 (492) T ss_pred chHhHHHHHHHHHHHHHHHHHHHHHhccceeeee--------cC---CcccchhHHH----H---H-hhccceecCCCCc Confidence 8988887777777765555544433222222211 10 0011111111 1 1 1222333455555 Q ss_pred eEE--eecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH-HHH---HHHHHHHhhhHHHHHHHHHHHH Q lcl|Aclame:pro 293 VTP--LVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY-FNA---RCQSRRVDLSFEIEDFCDKLIE 366 (449) Q Consensus 293 ~~~--~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n-yyd---~I~~~Qe~~~~p~~~~l~~l~~ 366 (449) .+. .+.+.+++...++.+.+.|...+++|-.-+ ..-||+.|+.=++. |.. .+..+|..+...+.+++. |+. T Consensus 322 ~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~--~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~-li~ 398 (492) T protein:vir:97 322 VDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSS--DKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLW-FVF 398 (492) T ss_pred ceeEeccCCHHHHHHHHHHHHHHHHHHhCCCCCCc--cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH Confidence 444 566778999999999999999999995322 22233333333443 222 233333334343444443 333 Q ss_pred HhcC--CCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCcccc-CH-HHHHHH-------h-cCCC--CCCCC Q lcl|Aclame:pro 367 LKII--DAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAF-SR-EEIRTA-------A-GYDN--DDEEP 432 (449) Q Consensus 367 ~~~~--~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~-~~-~e~r~~-------~-~~~~--~~~~~ 432 (449) .-.+ ....++.+.|+|-...+++|.|++..+.+..++.-.-....+.+ ++ +|+... . .... ..... T Consensus 399 ~~~~~~~~~~~i~v~f~~~~p~~~~e~a~~~~kl~G~iS~et~l~~l~~v~d~~~Eleri~~E~~~~~~~~~~~~~~~~~ 478 (492) T protein:vir:97 399 EHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGAD 478 (492) T ss_pred HHhcCCcccceeeEEecCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhccccCCCC Confidence 2222 22347899999999999999999888765543322111112222 22 333211 0 0111 11111 Q ss_pred CCCCCcchhhcccc Q lcl|Aclame:pro 433 LGEEDGDEEDKATD 446 (449) Q Consensus 433 ~~~~~~~ee~~~~~ 446 (449) ...+.++.+++..| T Consensus 479 ~~~~~~~~~~~~~e 492 (492) T protein:vir:97 479 SAQQQERSNNKESE 492 (492) T ss_pred CCcccccccccccC Confidence 11111111111111 No 127 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=98.93 E-value=1.3e-08 Score=63.85 Aligned_cols=403 Identities=7% Similarity=-0.005 Sum_probs=166.2 Q ss_pred Cchhh-HHHH-HhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDKL-TLAV-NHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~~-~~~v-~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) .+.++ .--+ +|..+-.+... ...+..+---+-..+++.+.......... ..-....+++.||+..+.=++-+ T Consensus 35 ~~~~~i~~~i~~~~~~~~r~~~-l~~YY~g~~~i~~~~~~~~~~~~~~~~~~-----~~ki~~n~~k~Ivd~~~~~l~G~ 108 (483) T protein:vir:12 35 TLEEMIVRYIKQHLEKLPEISI-GQEYYEQRPDIVKEPKPVDATGAVDPLKP-----DDRMITNFHANLVDQKVSYIVGK 108 (483) T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccccccccccccccccccccc-----ccccccchHHHHHHHHhhhhccc Confidence 11111 1001 11111111111 11121111000111111111100000000 00013588999999999999999 Q ss_pred CcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccC----------- Q lcl|Aclame:pro 79 NPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGR----------- 146 (449) Q Consensus 79 ~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~----------- 146 (449) ++++...++. . . ..++++...+...++.++.+.+-.||.|++++..+. |...-..+++.. T Consensus 109 p~~~~~~d~~-~---~----~~l~~~~~n~~~~~~~~~~~~~~~~G~~y~~v~~d~d~~~~i~~~~p~~~~~v~d~~~~~ 180 (483) T protein:vir:12 109 PIAFKHTDDE-V---V----KRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHE 180 (483) T ss_pred CceeccCChH-H---H----HHHHHHHhccHHHHHHHHHHHHhhCCeEEEEEEEcCCCceEEEEEcccceEEEEcCCCCC Confidence 9987544322 1 1 223333334556667777777788999999998853 322111122211 Q ss_pred ceeeEEEeccccCChhhhhccccccccCCc---eeEEeeecc----cCCCccceEE----cc-ce--eeeccCCCCCcch Q lcl|Aclame:pro 147 GLQKVSVSWAGSLKVAEWDTGINSKTYGQP---KLWKYTERL----PNGSSRRVDI----HP-DR--VFILGDYSEDAIG 212 (449) Q Consensus 147 ~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P---~~y~i~~~~----~~~~~~~~~I----H~-SR--li~~~~~~~~G~s 212 (449) .+.....+|... +-..-.++.| .+|...... .........+ |. .+ ++.|.+ ..+|.| T Consensus 181 ~~~~~ir~~~~~--------~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-n~~g~s 251 (483) T protein:vir:12 181 ELEAFIRMYKLE--------NETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-NDLEIS 251 (483) T ss_pred ceEEEEEEEEee--------cceEEEEEecCeEEEEEEeCCeeeecccccccccccccccCCCCccceEEecC-CCCCCC Confidence 111111111110 0000111111 122111000 0000011112 11 11 233322 346888 Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCc Q lcl|Aclame:pro 213 FLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGAT 292 (449) Q Consensus 213 ~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed 292 (449) .++.+..-+..++.+....+..+-..+...+.+. +. ......+....+ +....+.+.++.+ T Consensus 252 d~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~--------g~---~~~~~~~~~~~~--------~~~~~~~~~~~~~ 312 (483) T protein:vir:12 252 DIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLT--------NY---DDQELPEFKRLL--------RYYGAIKVSDNGG 312 (483) T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcCceeeee--------cC---CcccchhHHHhh--------hhccccccCCCCc Confidence 8888777777777665554443322211111111 10 011111111111 1112233344445 Q ss_pred --eEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH-HH---HHHHHHHHhhhHHHHHHHHHHHH Q lcl|Aclame:pro 293 --VTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY-FN---ARCQSRRVDLSFEIEDFCDKLIE 366 (449) Q Consensus 293 --~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n-yy---d~I~~~Qe~~~~p~~~~l~~l~~ 366 (449) |-..+.+.+++...++.+.+.|...+++|-.- ++ .-+|+.|+.-++. |. ..+..+|..+...+.++ .+|+. T Consensus 313 ~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~-~~-~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~-~~li~ 389 (483) T protein:vir:12 313 VDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFS-SD-KFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQEL-LWFVF 389 (483) T ss_pred ceEEeecCCHHHHHHHHHHHHHHHHHHhCCCCCC-cc-ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH Confidence 44456677899999999999999999999532 22 2233333323432 22 23333333333334443 33333 Q ss_pred HhcC--CCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCcccc-CH-HHHHH---H----h-cCCCCCCCCCC Q lcl|Aclame:pro 367 LKII--DAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAF-SR-EEIRT---A----A-GYDNDDEEPLG 434 (449) Q Consensus 367 ~~~~--~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~-~~-~e~r~---~----~-~~~~~~~~~~~ 434 (449) .-.+ ....++++.|+|-...++++.|++..+.+..++.-......+.+ ++ +|+.. + . ..........+ T Consensus 390 ~~~~~~~~~~~i~v~f~~~~p~~~~~~a~~~~kl~GiiS~et~~~~~~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d 469 (483) T protein:vir:12 390 EHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGAD 469 (483) T ss_pred HHhcCCCccceeeEEeCCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccccccccC Confidence 3222 22357899999999999999999888766543321111112222 22 23321 1 0 11111111111 Q ss_pred CCCcchhhcccccC Q lcl|Aclame:pro 435 EEDGDEEDKATDSA 448 (449) Q Consensus 435 ~~~~~ee~~~~~~~ 448 (449) ....+++....|+. T Consensus 470 ~~~~~~~~~~~e~e 483 (483) T protein:vir:12 470 GAQQQERSNNKESE 483 (483) T ss_pred CcccCCCCCcccCC Confidence 11111111112222 No 128 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=98.93 E-value=2.6e-09 Score=67.65 Aligned_cols=388 Identities=11% Similarity=0.022 Sum_probs=169.5 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHc-CchhHHHHhhhHHHHhcCC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRR-GGIAHGAVEKLVGKCWQTN 79 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~-~~l~r~iVd~pa~d~~r~~ 79 (449) |..++.-.. .+.....+.|+.....- .-|..+ -. ..+.. -+.++..+|+. .+++++|||.+++=+.=+| T Consensus 1 m~~~~i~~L---~~~~~~~~~r~~~~~~y-y~g~~~-~~----~~~~~-~p~~~~~~~~~v~nw~~~~Vd~~a~rl~~~G 70 (422) T protein:vir:97 1 MNYMGMGYL---RRKLALFKTGVDKRYRY-YAMDDR-DD----TRSIV-MPNNVREMYRSVLEWTAKGVDSLADRIIFRE 70 (422) T ss_pred CChHHHHHH---HHHHHHHHHHHHHHHHH-HhcCCC-hh----hcCcc-ccHHHHHHHHhhcchhHHHHHHHHhccccce Confidence 776543222 21111111122111000 011100 00 01111 23456666653 3566999999999666677 Q ss_pred cEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC--CCcccccccccCceeeEEEeccc Q lcl|Aclame:pro 80 PEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD--EKDWNLPATKGRGLQKVSVSWAG 157 (449) Q Consensus 80 ~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d--~~~~~~Pl~~~~~l~~i~v~~~~ 157 (449) |+. . +.+.. ..++ ..++-.+..++.+-+..||-|++++.-++ |...-.++.+..-+...++..+ T Consensus 71 f~~--~----d~~l~----~~w~---~N~ld~~~~~~~~~al~~G~sf~~v~~~~~~~~p~i~~~sp~~~~~i~D~~~~- 136 (422) T protein:vir:97 71 FTN--D----DFNAW----EIFK---ANNPDIFFDTAIQSALIASCCFVYIMPGAEDGLPKMQVIEASKATGILDPTTF- 136 (422) T ss_pred eeC--C----chhHH----HHHH---hcChHHHHHHHHHHHHHhcceeEEEeeCCCCCeeEEEEechhhEEEEEeCCCC- Confidence 753 1 11111 1121 11333344455555668898888886542 2221122222211111111110 Q ss_pred cCChh--hhhcc----ccccccCCce-eEEeeecccCCCccceEEccce---eeeccCCC----CCcchhH-HHHHHHHH Q lcl|Aclame:pro 158 SLKVA--EWDTG----INSKTYGQPK-LWKYTERLPNGSSRRVDIHPDR---VFILGDYS----EDAIGFL-EPAYNAFV 222 (449) Q Consensus 158 ~i~~~--~~~~D----p~s~~yg~P~-~y~i~~~~~~~~~~~~~IH~SR---li~~~~~~----~~G~s~l-~~~~~~l~ 222 (449) .+... .+..| +..-.|..+. .|.+. . ++... ..-|+-- ++.|.+++ ..|.|.+ +++..-+. T Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~-~~~~~~g~vPvv~~~n~~~~~~~~G~s~I~e~v~~l~d 212 (422) T protein:vir:97 137 LLTEGYAILESDSNGNPTLEAYFTDKDIWYYP-K--KGKPY-NIKNPTGHPLLVPIIHRPDAVRPFGRSRITKAGMYHQK 212 (422) T ss_pred cceeeEEEEEecCCCcEEEEEEEcCceEEEEc-C--CCccc-cccCCCCCcceEEecccCCCccccCccccchhHHHHHH Confidence 01100 01111 1111222222 22221 1 11111 1112222 34454432 4688876 66666565 Q ss_pred HHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCC---C--ceEEe- Q lcl|Aclame:pro 223 SLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQG---A--TVTPL- 296 (449) Q Consensus 223 ~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---e--d~~~~- 296 (449) .+.++..-..-.. .-+........++ ...+ .....+...+.++ ..+.++ + ++.++ T Consensus 213 a~~r~~~~~~~~~-----e~~a~pqr~i~G~------d~d~--~~~~~~~~~~~~i------~~~~~de~~~~~~v~q~~ 273 (422) T protein:vir:97 213 AAKRTLERAEVTA-----EFYSFPQKYVLGM------DPDA--KPMEKWRATVSTL------LEISKDEDGDKPTVGQFT 273 (422) T ss_pred HHHHHHHHHHHHH-----HHhcchhhhhccc------Cccc--ccCchhhhhhhhh------hccCCCCCCCcceeeecC Confidence 5555533211110 0011111111111 1111 1111121111111 122222 2 24333 Q ss_pred ecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--c Q lcl|Aclame:pro 297 VTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-----QKYFNARCQSRRVDLSFEIEDFCDKLIELK--I 369 (449) Q Consensus 297 ~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD-----~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~--~ 369 (449) ++++.+..+.+.....++|+.+++|..-|-|.+ . +.++++ ....-..++.+|+.+...+.+.+..++... . T Consensus 274 ~~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~-~-NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~ 351 (422) T protein:vir:97 274 TASMAPFMEHLKMYASLFAGGSGLTLDDLGFPS-D-NPSSVESIKAAHENLRAAGRKAQRSFSSGFLNVAYIAVCLRDEF 351 (422) T ss_pred CCChhHHHHHHHHHHHHHhcccCCCHHHhcccc-C-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 345677888899999999999999965554444 2 334332 445566667777666665555544333222 1 Q ss_pred CCCCC---CceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCCCCCcchhhccc Q lcl|Aclame:pro 370 IDAVA---KKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGEEDGDEEDKAT 445 (449) Q Consensus 370 ~~~~~---~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~~~~~~ee~~~~ 445 (449) ...++ +..+.|.|....+..+.|++ |+++.+++++|. ...+.+-+++..|++.++.+...- +++..++ T Consensus 352 ~~~~~~~~~~~~~w~p~~~~~~~s~a~~----aDa~~Kl~~a~~-~~~~~~~~~~~lg~~~~~~~~~~~---~~~~~d~ 422 (422) T protein:vir:97 352 PYLRNQFMDTVIKWEPLFEADANMLTLV----GDGAIKLNQAIP-GFMDADVIRDLTGVKGADKPIPAI---TEVTTDG 422 (422) T ss_pred cccchhhccceEEEccCCCCChHHHHHH----HHHHHHHHhhcc-ccccHHHHHHHcCCCchhHHHHHH---HhhhccC Confidence 22233 46899999988886665553 588888888852 345667788888886554321111 1111111 No 129 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=98.89 E-value=1.9e-08 Score=62.86 Aligned_cols=411 Identities=8% Similarity=-0.002 Sum_probs=163.0 Q ss_pred CchhhH---------------HHHHhhhHHHHHH--HHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCch Q lcl|Aclame:pro 1 MTDKLT---------------LAVNHALNDARMA--RARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGI 63 (449) Q Consensus 1 ~~~~~~---------------~~v~~~~~~~~~~--~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l 63 (449) +.+.+. -.++...+.-+.. .....+..+.--+....++.+...+.. .......+.=....+ T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~--~~~~~~~~~ri~~n~ 88 (503) T protein:vir:59 11 HTEELNEIIVESAKEIAEPDTTMIQKLIDEHNPEPLLKGVRYYMCENDIEKKRRTYYDAAGQQ--LVDDTKTNNRTSHAW 88 (503) T ss_pred hHHhHHHhhhhhhhhccchhHHHHHHHHHhhcHHHHHHHHHHhccccchhhccchhccccccc--ccccccccceeecch Confidence 111111 1111111110000 000011111000000011111111110 000000000113568 Q ss_pred hHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-CCcccccc Q lcl|Aclame:pro 64 AHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPA 142 (449) Q Consensus 64 ~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl 142 (449) +++||+..+.=++-+++++...++. . .+.++.++..++..++.++.+.+..||.|++++.++. |...-..+ T Consensus 89 ~~~ivd~~~~yl~g~~~~~~~~d~~-~-------~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~i~~~ 160 (503) T protein:vir:59 89 HKLFVDQKTQYLVGEPVTFTSDNKT-L-------LEYVNELADDDFDDILNETVKNMSNKGIEYWHPFVDEEGEFDYVIF 160 (503) T ss_pred HHHHHHHHHhhhhcCCeeeccCcHH-H-------HHHHHHHHhcCHHHHHHHHHHHHhhCCeEEEEEeecCCCceEEEEE Confidence 9999999999999999987543321 1 1233344445677778888888899999999999853 32211112 Q ss_pred cccC-----------ceeeEEEeccccCChhhhhccccccccCCcee-EEeeecccCC--------------CccceEEc Q lcl|Aclame:pro 143 TKGR-----------GLQKVSVSWAGSLKVAEWDTGINSKTYGQPKL-WKYTERLPNG--------------SSRRVDIH 196 (449) Q Consensus 143 ~~~~-----------~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~-y~i~~~~~~~--------------~~~~~~IH 196 (449) ++.. .+..+..+|...-.-.. ...--.++.|.. |.......+. ......-| T Consensus 161 ~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~---~~~~~evy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (503) T protein:vir:59 161 PAEEMIVVYKDNTRRDILFALRYYSYKGIMGE---ETQKAELYTDTHVYYYEKIDGVYQMDYSYGENNPRPHMTKGGQAI 237 (503) T ss_pred ccceeEEEEeCCCCCceEEEEEEEEEecCCCc---eEEEEEEEeCCcEEEEEEcCCcccccccccccccccceeecceec Confidence 2111 11111111110000000 000000111110 0000000000 00001112 Q ss_pred cce---eeeccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHH Q lcl|Aclame:pro 197 PDR---VFILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNE 273 (449) Q Consensus 197 ~SR---li~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 273 (449) .-- ++.|.+ ..+|.|.++.+-.-+..++.+....+..+-..+...+.+. + ..+....+... T Consensus 238 ~~~~vPiv~~~n-n~~~~sd~~~~~~liDa~d~~~s~~~~~~~~~~~~~~v~~--------g---~~~~~~~~~~~---- 301 (503) T protein:vir:59 238 GWGRVPIIPFKN-NEEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLK--------N---YDGENPKEFTA---- 301 (503) T ss_pred cCCccceEEecC-CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCeeEee--------c---CCccccchhhh---- Confidence 211 222322 3468888888877777777765554444322222222111 1 01111111111 Q ss_pred HHHHHhccccceeecCCCceE--EeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh-H----HHHHHHH Q lcl|Aclame:pro 274 VAGEINRGNDVLMTTQGATVT--PLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-Q----KYFNARC 346 (449) Q Consensus 274 ~~~~~~~~~~~~l~~~~ed~~--~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD-~----~nyyd~I 346 (449) .+. ....+.+.++.+.+ +.+.+.+++...++.+.+.|...+.+|-.-. +. -+| ++++. + ..-...+ T Consensus 302 ---~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~-~~-~~~-~~Sg~Ai~~~~~~l~~k~ 374 (503) T protein:vir:59 302 ---NLR-YHSVIKVSGDGGVDTLRAEIPVDSAAKELERIQDELYKSAQAVDNSP-ET-IGG-GATGPALENLYALLDLKA 374 (503) T ss_pred ---hhh-cccceeccCCCcceeEeccCCHHHHHHHHHHHHHHHHHHhcccCCCc-cc-ccc-cccHHHHHHHHHHHHHHH Confidence 111 11223344444444 4556677899999999999988888885321 11 122 33442 2 2233444 Q ss_pred HHHHHhhhHHHHHHHHHHHHH-hc---CC--CCCCceEEeCCCCCCCHHHHHHHHHHHHHH----HHHHHHcCCcccc-C Q lcl|Aclame:pro 347 QSRRVDLSFEIEDFCDKLIEL-KI---ID--AVAKKAVIWDDLNEQTGTEKLTNAKTMGEI----NQTMLGSGDNPAF-S 415 (449) Q Consensus 347 ~~~Qe~~~~p~~~~l~~l~~~-~~---~~--~~~~~~~~f~pL~~~sekE~Aei~~~~A~a----~~~~~~~g~~~~~-~ 415 (449) +.+|..+...+.+++..++.. +. .. ...++.+.|++-...++++.|+...+..++ ..+++.. .+-+ + T Consensus 375 ~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~~~~~~~~kl~~~GiiS~et~l~~--l~~v~d 452 (503) T protein:vir:59 375 NMAERKIRAGLRLFFWFFAEYLRNTGKGDFNPDKELTMTFTRTRIQNDSEIVQSLVQGVTGGIMSKETAVAR--NPFVQD 452 (503) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEeCCCCCCCHHHHHHHHHHHHhCCCCchHHHHHh--CCCCCC Confidence 444444444455444433321 11 11 123689999999999999887766554332 1111111 1222 2 Q ss_pred H-HHHHHHh-----cC---CCC-CC-CCCCCCC-cc-----hhhcccccCC Q lcl|Aclame:pro 416 R-EEIRTAA-----GY---DND-DE-EPLGEED-GD-----EEDKATDSAA 449 (449) Q Consensus 416 ~-~e~r~~~-----~~---~~~-~~-~~~~~~~-~~-----ee~~~~~~~a 449 (449) + +|+.... .. .+. +. ...++++ ++ .+...+-.+| T Consensus 453 ~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 503 (503) T protein:vir:59 453 PEEELARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPNAGAAESGGAGQVS 503 (503) T ss_pred HHHHHHHHHHHHHHHHhhhccccCccCCCCCCCcCCCCCCcccCCCCCCcC Confidence 3 3433210 00 000 11 1111111 11 1111111112 No 130 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=98.88 E-value=2.1e-08 Score=62.71 Aligned_cols=400 Identities=8% Similarity=-0.002 Sum_probs=169.0 Q ss_pred CchhhHHHHHhhhH---------HHHHHH--------------HHHHHHH-HHhhcC--cccccchhccCCcccCCHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALN---------DARMAR--------------ARMGLMV-PTMGLD--NKRHSAWCEYGFPELVTYENL 54 (449) Q Consensus 1 ~~~~~~~~v~~~~~---------~~~~~~--------------~~~~~~~-~~~g~~--t~r~~~~~~~~~~~~~~~~~l 54 (449) |++++++=-..... ...... .+....- --.|.. ..|.+....-+ .. .... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~Yy~g~~~i~~r~~~~~~~~-~~---~~~~ 76 (474) T protein:vir:95 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIIRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVYG-NI---DYDK 76 (474) T ss_pred CcceeecCCCCchhhHHHHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcccCchhcccccccccc-cc---cccc Confidence 66665542211110 000000 0000000 000000 00000000000 00 0000 Q ss_pred HHHHHcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC Q lcl|Aclame:pro 55 YSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD 134 (449) Q Consensus 55 ~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d 134 (449) .+.--...+++.||+..+.=++-+++++...++. ..+.++.++..++..++.++.+.+..||.|++++.++. T Consensus 77 ~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~d~~--------~~~~l~~~~~n~~~~~~~e~~~~~~~~G~~~~~v~~d~ 148 (474) T protein:vir:95 77 PDWRITTNFHQNLVDQKVSYVASKPVTYSCEDES--------VLKIIHDVLDTRWDNKLIDILTATSNKGIDWLQVYINE 148 (474) T ss_pred ccceeccchHHHHHHHHHhhhccCCceeccCchH--------HHHHHHHHHhccHHHHHHHHHHHHhhcCcEEEEEEecC Confidence 0111135789999999999999999997543322 12233444445667778888888999999999998853 Q ss_pred -CCcccccccccC-----------ceeeEEEeccccCChhhhhccccccccCCc---eeEEeeecccC----CC----cc Q lcl|Aclame:pro 135 -EKDWNLPATKGR-----------GLQKVSVSWAGSLKVAEWDTGINSKTYGQP---KLWKYTERLPN----GS----SR 191 (449) Q Consensus 135 -~~~~~~Pl~~~~-----------~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P---~~y~i~~~~~~----~~----~~ 191 (449) |+..-..+++.. .+..+..+|... +...-.++.| ..|........ .. .. T Consensus 149 ~~~~~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~--------~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (474) T protein:vir:95 149 NGEMKLFRVPAEQAIPIWVDKEREELKSFIRYYKFN--------NEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHIQS 220 (474) T ss_pred CCceEEEEEcccceEEEEcCCCCCceEEEEEEEEEc--------CeeEEEEEeCCeEEEEEEcCCccccccccCcccccc Confidence 322122222211 111111111100 0000011111 11211100000 00 00 Q ss_pred ceEEcccee---eeccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHH Q lcl|Aclame:pro 192 RVDIHPDRV---FILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQ 268 (449) Q Consensus 192 ~~~IH~SRl---i~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 268 (449) ...-|.--. +.|.+ ...|.|.++.+..-+..++.+....+..+-..+...+.+ .+ ..+...++.. T Consensus 221 ~~~~~~~g~iPvv~~~n-n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~--------~g---~~~~~~~~~~ 288 (474) T protein:vir:95 221 HFSNGNWGRVPFIAFKN-NPEEVSDIWMYKSLIDAIDKRLSDAQNMFDESVELIYIL--------KG---YEGQDLEEFM 288 (474) T ss_pred cccccCCCccceEeecC-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeee--------ec---CCcccchhhh Confidence 111233222 22222 235888898888877777777665554442222111111 11 1111111111 Q ss_pred HHHHHHHHHHhccccceeecCCCce--EEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH-H--- Q lcl|Aclame:pro 269 DKFNEVAGEINRGNDVLMTTQGATV--TPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY-F--- 342 (449) Q Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~ed~--~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n-y--- 342 (449) . .+ .....+.++++.+. -+.+.+.+++...++.+.++|...+++|- ..++. .+|+.|+.-++. | T Consensus 289 ~-------~~-~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~-~~~~~-~~~n~Sg~Alk~~~~~l 358 (474) T protein:vir:95 289 R-------GL-KYYKAINVDGDGGVETIQVEVPVSSTKEYIDLMRAYIMEFGQGVD-FQTDK-FGSAPSGIALKFLYGNL 358 (474) T ss_pred h-------hh-hccceeeccCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcc-ccccc-ccccchHHHHHHHHHHH Confidence 1 11 11223334455554 45567788999999999999999999995 22322 233333323332 3 Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCC--CCCCceEEeCCCCCCCHHHHHHHHHHHHHHHH--HHHHcCCcccc-CH- Q lcl|Aclame:pro 343 NARCQSRRVDLSFEIEDFCDKLIELKIID--AVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQ--TMLGSGDNPAF-SR- 416 (449) Q Consensus 343 yd~I~~~Qe~~~~p~~~~l~~l~~~~~~~--~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~--~~~~~g~~~~~-~~- 416 (449) ...+..++..+...+.+++. ++..-.+. ...++.+.|++-...+++|.|++..+ +...+ +++.. .+-+ ++ T Consensus 359 ~~k~~~k~~~~~~~l~~~~~-li~~~~g~~~d~~~i~v~f~~~~p~d~~e~a~~~~~-~g~iS~et~i~~--l~~v~d~~ 434 (474) T protein:vir:95 359 DLKANKLKNKATVAIQELIG-FIIDFNNLKMDVKDIEISFNFNRMMNDAEQSQIIAQ-SQYLSRETLVKS--SPLVDDYK 434 (474) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhCCCcccceeeEEeccCCCcCHHHHHHHHHh-cCCCchHHHHHh--CCCCCCHH Confidence 23333344334444444443 33333332 23578999999999999998886543 22221 12211 1222 22 Q ss_pred HHHHH---H----h-cCCCCCC--CCCCCCCcchhhcccc Q lcl|Aclame:pro 417 EEIRT---A----A-GYDNDDE--EPLGEEDGDEEDKATD 446 (449) Q Consensus 417 ~e~r~---~----~-~~~~~~~--~~~~~~~~~ee~~~~~ 446 (449) +|+.. + . ....... ....++++++.+++.| T Consensus 435 ~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 474 (474) T protein:vir:95 435 AELERIEQEQMEYNKQLPNLDDGGADGAQQQERSNDKESE 474 (474) T ss_pred HHHHHHHHHHHHHHhcccccccccCCCCcCCCCCccCCCC Confidence 23321 1 0 0111111 1111112222222222 No 131 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=98.87 E-value=2.3e-08 Score=62.48 Aligned_cols=406 Identities=7% Similarity=0.011 Sum_probs=166.8 Q ss_pred CchhhHHHHHhhhHHHHHH-------HHHHHHHHHHhhcCcccccc--hhccCC--cccC----------C-HHHHHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMA-------RARMGLMVPTMGLDNKRHSA--WCEYGF--PELV----------T-YENLYSLY 58 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~g~~t~r~~~--~~~~~~--~~~~----------~-~~~l~~~Y 58 (449) |++.|++=+.-..+.--+. -+..-+...........+.+ ...++. +..+ . .......- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~k 80 (474) T protein:vir:94 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDKPDWR 80 (474) T ss_pred CcccccccCCCchhhHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhccccccccccCcce Confidence 5555554333211100000 00000000000000000000 000000 0000 0 00000001 Q ss_pred HcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcc Q lcl|Aclame:pro 59 RRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDW 138 (449) Q Consensus 59 ~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~ 138 (449) -...+++.||+..+.=++-+++++...++. ..+.++.++..++..++.++.+.+..||.|++++..+....+ T Consensus 81 i~~n~~k~Ivd~~~~~l~g~p~~~~~~d~~--------~~~~l~~~~~n~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~ 152 (474) T protein:vir:94 81 ITTNFHQNLVDQKVSYVASKPVTYSCEDEN--------VLKVIHDVLDTRWDNKLIDILTATSNKGIDWLQVYINENGEM 152 (474) T ss_pred eecchHHHHHHHHHhhhhcCCceeccCcHH--------HHHHHHHHHhccHHHHHHHHHHHHhhcCceEEEEEecCCCee Confidence 135789999999999999999987544322 122344444556777788888888999999999988533221 Q ss_pred c----ccccc------c--CceeeEEEeccccCChhhhhccccccccCCce---eEEeeecccC----CCcc----ceEE Q lcl|Aclame:pro 139 N----LPATK------G--RGLQKVSVSWAGSLKVAEWDTGINSKTYGQPK---LWKYTERLPN----GSSR----RVDI 195 (449) Q Consensus 139 ~----~Pl~~------~--~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~---~y~i~~~~~~----~~~~----~~~I 195 (449) . .|... . +.+..+..+|.. .+...-.++.|. .|........ .... ...- T Consensus 153 ~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~--------~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 224 (474) T protein:vir:94 153 KLFRVPAEQAIPIWVDKEREELKSFIRYYKF--------NNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSN 224 (474) T ss_pred EEEEEcccceEEEEcCCCCCceEEEEEEEEe--------cCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccc Confidence 1 12110 0 011111111110 000000111111 1111100000 0000 0112 Q ss_pred ccce---eeeccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHH Q lcl|Aclame:pro 196 HPDR---VFILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFN 272 (449) Q Consensus 196 H~SR---li~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 272 (449) |.-- ++.|.+ ...|.|.++++..-+..++.+....+..+-..+...+.+. + ..+...++... T Consensus 225 ~~~g~vPvv~~~n-n~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~--------g---~~~~~~~~~~~--- 289 (474) T protein:vir:94 225 GNWGRVPFIAFKN-NPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILK--------G---YEGEDLEEFMR--- 289 (474) T ss_pred cCCCccceEEecC-CcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeee--------c---CCcccchhhhh--- Confidence 2222 222322 2358888988888777777766555543321111111111 1 11111111111 Q ss_pred HHHHHHhccccceeecCCCceEE--eecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHH----HHHHH Q lcl|Aclame:pro 273 EVAGEINRGNDVLMTTQGATVTP--LVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQK----YFNAR 345 (449) Q Consensus 273 ~~~~~~~~~~~~~l~~~~ed~~~--~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~----nyyd~ 345 (449) .+. ...++.+.++.+.+. .+.+.+++...++.+...|...+++|-.- + ...+| |.++ =++ .-... T Consensus 290 ----~~~-~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~-~-~~~~~-n~Sg~Al~~~~~~l~~k 361 (474) T protein:vir:94 290 ----GLK-YYKAINVDGDGGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQ-T-DKFGS-APSGIALKFLYGNLDLK 361 (474) T ss_pred ----hhh-ccceeeccCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccC-c-ccccc-ccHHHHHHHHHHHHHHH Confidence 111 122333445555444 55677889999999999999999999521 1 22233 3344 333 22333 Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhcC-CCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHH--HHHHcCCcccc-CH-HHHH Q lcl|Aclame:pro 346 CQSRRVDLSFEIEDFCDKLIELKII-DAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQ--TMLGSGDNPAF-SR-EEIR 420 (449) Q Consensus 346 I~~~Qe~~~~p~~~~l~~l~~~~~~-~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~--~~~~~g~~~~~-~~-~e~r 420 (449) +..+|..+.+.+.+++..++..... ....++.+.|+|-...+++|.|++..+ +...+ +++.. .+-+ ++ +|+. T Consensus 362 ~~~k~~~~~~~l~~~~~li~~~~~~~~d~~~i~v~f~~~~p~~~~e~a~~~~~-~g~iS~et~l~~--l~~v~D~~~E~e 438 (474) T protein:vir:94 362 ANKLKNKATVAIQELISFIIDFNNLKTDVKDIEISFNFNRMMNDAEQSQIIAQ-SQYLSRETLVKS--SPLVDDYKAELE 438 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCcccCHHHHHHHHHH-cCCCCHHHHHHh--CCCCCCHHHHHH Confidence 3444444444444444433332211 223468999999999999988876543 22111 11111 1122 22 2322 Q ss_pred HH-------h-cCCCCCCCCCCCCCcchhhcccccC Q lcl|Aclame:pro 421 TA-------A-GYDNDDEEPLGEEDGDEEDKATDSA 448 (449) Q Consensus 421 ~~-------~-~~~~~~~~~~~~~~~~ee~~~~~~~ 448 (449) .. . ..........+...++++..+.++. T Consensus 439 ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 474 (474) T protein:vir:94 439 RIEQEQMEYNKQLPNLDDGGADGAQQQEGSNNKESE 474 (474) T ss_pred HHHHHHHHHHhhccccCCCCCCCcccCCCCcccccC Confidence 11 0 1111111111111112221111111 No 132 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=98.87 E-value=2.3e-08 Score=62.48 Aligned_cols=406 Identities=7% Similarity=0.011 Sum_probs=166.8 Q ss_pred CchhhHHHHHhhhHHHHHH-------HHHHHHHHHHhhcCcccccc--hhccCC--cccC----------C-HHHHHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMA-------RARMGLMVPTMGLDNKRHSA--WCEYGF--PELV----------T-YENLYSLY 58 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~g~~t~r~~~--~~~~~~--~~~~----------~-~~~l~~~Y 58 (449) |++.|++=+.-..+.--+. -+..-+...........+.+ ...++. +..+ . .......- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~k 80 (474) T protein:vir:97 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDKPDWR 80 (474) T ss_pred CcccccccCCCchhhHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhccccccccccCcce Confidence 5555554333211100000 00000000000000000000 000000 0000 0 00000001 Q ss_pred HcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcc Q lcl|Aclame:pro 59 RRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDW 138 (449) Q Consensus 59 ~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~ 138 (449) -...+++.||+..+.=++-+++++...++. ..+.++.++..++..++.++.+.+..||.|++++..+....+ T Consensus 81 i~~n~~k~Ivd~~~~~l~g~p~~~~~~d~~--------~~~~l~~~~~n~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~ 152 (474) T protein:vir:97 81 ITTNFHQNLVDQKVSYVASKPVTYSCEDEN--------VLKVIHDVLDTRWDNKLIDILTATSNKGIDWLQVYINENGEM 152 (474) T ss_pred eecchHHHHHHHHHhhhhcCCceeccCcHH--------HHHHHHHHHhccHHHHHHHHHHHHhhcCceEEEEEecCCCee Confidence 135789999999999999999987544322 122344444556777788888888999999999988533221 Q ss_pred c----ccccc------c--CceeeEEEeccccCChhhhhccccccccCCce---eEEeeecccC----CCcc----ceEE Q lcl|Aclame:pro 139 N----LPATK------G--RGLQKVSVSWAGSLKVAEWDTGINSKTYGQPK---LWKYTERLPN----GSSR----RVDI 195 (449) Q Consensus 139 ~----~Pl~~------~--~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~---~y~i~~~~~~----~~~~----~~~I 195 (449) . .|... . +.+..+..+|.. .+...-.++.|. .|........ .... ...- T Consensus 153 ~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~--------~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 224 (474) T protein:vir:97 153 KLFRVPAEQAIPIWVDKEREELKSFIRYYKF--------NNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSN 224 (474) T ss_pred EEEEEcccceEEEEcCCCCCceEEEEEEEEe--------cCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccc Confidence 1 12110 0 011111111110 000000111111 1111100000 0000 0112 Q ss_pred ccce---eeeccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHH Q lcl|Aclame:pro 196 HPDR---VFILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFN 272 (449) Q Consensus 196 H~SR---li~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 272 (449) |.-- ++.|.+ ...|.|.++++..-+..++.+....+..+-..+...+.+. + ..+...++... T Consensus 225 ~~~g~vPvv~~~n-n~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~--------g---~~~~~~~~~~~--- 289 (474) T protein:vir:97 225 GNWGRVPFIAFKN-NPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILK--------G---YEGEDLEEFMR--- 289 (474) T ss_pred cCCCccceEEecC-CcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeee--------c---CCcccchhhhh--- Confidence 2222 222322 2358888988888777777766555543321111111111 1 11111111111 Q ss_pred HHHHHHhccccceeecCCCceEE--eecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHH----HHHHH Q lcl|Aclame:pro 273 EVAGEINRGNDVLMTTQGATVTP--LVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQK----YFNAR 345 (449) Q Consensus 273 ~~~~~~~~~~~~~l~~~~ed~~~--~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~----nyyd~ 345 (449) .+. ...++.+.++.+.+. .+.+.+++...++.+...|...+++|-.- + ...+| |.++ =++ .-... T Consensus 290 ----~~~-~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~-~-~~~~~-n~Sg~Al~~~~~~l~~k 361 (474) T protein:vir:97 290 ----GLK-YYKAINVDGDGGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQ-T-DKFGS-APSGIALKFLYGNLDLK 361 (474) T ss_pred ----hhh-ccceeeccCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccC-c-ccccc-ccHHHHHHHHHHHHHHH Confidence 111 122333445555444 55677889999999999999999999521 1 22233 3344 333 22333 Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhcC-CCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHH--HHHHcCCcccc-CH-HHHH Q lcl|Aclame:pro 346 CQSRRVDLSFEIEDFCDKLIELKII-DAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQ--TMLGSGDNPAF-SR-EEIR 420 (449) Q Consensus 346 I~~~Qe~~~~p~~~~l~~l~~~~~~-~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~--~~~~~g~~~~~-~~-~e~r 420 (449) +..+|..+.+.+.+++..++..... ....++.+.|+|-...+++|.|++..+ +...+ +++.. .+-+ ++ +|+. T Consensus 362 ~~~k~~~~~~~l~~~~~li~~~~~~~~d~~~i~v~f~~~~p~~~~e~a~~~~~-~g~iS~et~l~~--l~~v~D~~~E~e 438 (474) T protein:vir:97 362 ANKLKNKATVAIQELISFIIDFNNLKTDVKDIEISFNFNRMMNDAEQSQIIAQ-SQYLSRETLVKS--SPLVDDYKAELE 438 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCcccCHHHHHHHHHH-cCCCCHHHHHHh--CCCCCCHHHHHH Confidence 3444444444444444433332211 223468999999999999988876543 22111 11111 1122 22 2322 Q ss_pred HH-------h-cCCCCCCCCCCCCCcchhhcccccC Q lcl|Aclame:pro 421 TA-------A-GYDNDDEEPLGEEDGDEEDKATDSA 448 (449) Q Consensus 421 ~~-------~-~~~~~~~~~~~~~~~~ee~~~~~~~ 448 (449) .. . ..........+...++++..+.++. T Consensus 439 ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 474 (474) T protein:vir:97 439 RIEQEQMEYNKQLPNLDDGGADGAQQQEGSNNKESE 474 (474) T ss_pred HHHHHHHHHHhhccccCCCCCCCcccCCCCcccccC Confidence 11 0 1111111111111112221111111 No 133 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=98.87 E-value=4.5e-09 Score=66.35 Aligned_cols=399 Identities=11% Similarity=0.070 Sum_probs=176.3 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccch-hccCCcccCCHHHHHHHH--------------------- Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAW-CEYGFPELVTYENLYSLY--------------------- 58 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~-~~~~~~~~~~~~~l~~~Y--------------------- 58 (449) |+++++--++--.+ +..+. ...+.-+.+++.+ ....+.+ + .....+| T Consensus 3 ~~~~ik~~~~~~~~-------~~~~~-~~~~~i~d~~~i~~~~~~~~~-i--~~~~~~Y~g~~~~l~~~~~~~~~~~~~~ 71 (505) T protein:vir:79 3 FWDTLKNLFRKGSA-------AVGMT-KSLGQIIDDPRINLPADEVER-I--ARDKRYYMDDFKQVTHKNSYGDTQKHEL 71 (505) T ss_pred hHHHHHHHHHHhhh-------hhcch-hhhhhhhcccCCCCCHHHHHH-H--HHHHHHhcCCCccccccccCCCccccce Confidence 77777644432111 11110 1111111111110 0000000 0 0112223 Q ss_pred HcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEecCCCc Q lcl|Aclame:pro 59 RRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIRDEKD 137 (449) Q Consensus 59 ~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~ 137 (449) .+-.+++.||+..|+=++-+.++|..+++.. . +.+++++.. +++..+.+++..+-.+|++++-+.++.+.. T Consensus 72 ~slnl~~~i~~~~A~ll~~e~~~i~~~d~~~----~----e~l~~i~~~n~f~~~~~~~~e~a~a~G~~~~k~~~D~~~~ 143 (505) T protein:vir:79 72 QSVNVTKLASAKLASLIFNEQCQVTVSDETA----N----DFLDDVFQQNDFYTTFEEKLEEWIALGSGCVRPYVDSGKI 143 (505) T ss_pred eecchHHHHHHHHHhhhcCCCceeecCChHH----H----HHHHHHHHhccHHHHHHHHHHHHhhcCCeEEEEEEeCCce Confidence 3347999999999999999998886544221 1 234444333 577778888888888899999888864432 Q ss_pred -c-----c--cccccc-CceeeEEEeccccCChhhhhccccccccC-Cc-------eeEEeeeccc---CCC-------- Q lcl|Aclame:pro 138 -W-----N--LPATKG-RGLQKVSVSWAGSLKVAEWDTGINSKTYG-QP-------KLWKYTERLP---NGS-------- 189 (449) Q Consensus 138 -~-----~--~Pl~~~-~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg-~P-------~~y~i~~~~~---~~~-------- 189 (449) + + -|+..+ .++..+..+.++... +.....|+ .- ..|+|..... .+. T Consensus 144 ~i~~v~ad~~~P~~~d~~~~~~~a~~~~~~~~------~~~~~~~yt~lE~h~~~~~~~~I~n~ly~~~~~~~lG~~v~l 217 (505) T protein:vir:79 144 KLAWATADQVYPLQADTNQVNELAIASRTTEV------ENHRTIYYTLLEFHQWDHGDYVITNELYRSEAAETVGINVPL 217 (505) T ss_pred EEEEEcCCeeEEEEEcCCCeEEEEEEEEEEEe------cCCcceEEEEEEEEEecCceEEEEEEEEecCCCCccCcccch Confidence 1 1 144222 233222222111000 00000000 00 0122221110 000 Q ss_pred ---------ccceEEc-ccee--eeccC--------CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhh Q lcl|Aclame:pro 190 ---------SRRVDIH-PDRV--FILGD--------YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEK 249 (449) Q Consensus 190 ---------~~~~~IH-~SRl--i~~~~--------~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~ 249 (449) ...+.++ -.|. .+|.. ....|+|++..+.+.+..++.+......-+-....+ +-+. T Consensus 218 ~~~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~---i~v~- 293 (505) T protein:vir:79 218 NSLEQYEGLEPQVKITGLKHPLFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKKGQRR---LIVP- 293 (505) T ss_pred hhcccccccCcceeecCCCcceEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhcccc---eeec- Confidence 0011111 1221 12211 224699999999998888888766554433111011 1010 Q ss_pred hhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecC-CCceEEeeccc--CChHHHHHHHHHHHHhhhcCCceeee Q lcl|Aclame:pro 250 EIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQ-GATVTPLVTSV--ADPTATYNVNLQTAAAGVDIPTRILI 326 (449) Q Consensus 250 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ed~~~~~~~l--sgl~d~~~~~~~~iaaas~IP~t~L~ 326 (449) .++......+..+.......+..........+..+. +..|+.++..+ ....+.++.+.++++..+|++-. -| T Consensus 294 ----~~~l~~~~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~-~~ 368 (505) T protein:vir:79 294 ----AEWLKTGSSYGGQASETHPPMFDPDETVYQAMYGDASEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQG-TF 368 (505) T ss_pred ----hHHhcccCCCCcccccccccCCCccceeeeeccCCCCCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChh-hc Confidence 111111111111000000000000001111111122 33477777665 45677888888999999999854 45 Q ss_pred ccCccccc-cch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-------------cCCCC-CCceEEeCCCCCCCH Q lcl|Aclame:pro 327 GNQQAERS-STE---DQKYFNARCQSRRVDLSFEIEDFCDKLIELK-------------IIDAV-AKKAVIWDDLNEQTG 388 (449) Q Consensus 327 Gqs~gg~~-s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~-------------~~~~~-~~~~~~f~pL~~~se 388 (449) |....|.. +++ ..+.-|.++..+|..+...+.+++..++..+ .+.++ .+++|.|++-...++ T Consensus 369 ~~~~~~~~TAtei~s~~~~l~~t~~~~~~~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~f~d~i~~d~ 448 (505) T protein:vir:79 369 TTSPSGIQTATEVVTNNSQTYQTRSSYITQVEKTIKALTYAILELASVPSFYADGQARWTGDVDSLDITINFNDGVFVDQ 448 (505) T ss_pred CCCccccchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCceeEEEEeCCCCCCCH Confidence 55444443 455 4556888899888777666666665554332 11222 378999999999997 Q ss_pred HHHHHHHHHHHHHHHHHHHcCCc---------cccCHHHHHHHhc---CCCCCCCCCCCCCcchhhcccc Q lcl|Aclame:pro 389 TEKLTNAKTMGEINQTMLGSGDN---------PAFSREEIRTAAG---YDNDDEEPLGEEDGDEEDKATD 446 (449) Q Consensus 389 kE~Aei~~~~A~a~~~~~~~g~~---------~~~~~~e~r~~~~---~~~~~~~~~~~~~~~ee~~~~~ 446 (449) .+.++... .++.+|.+ +-++.+|+++++. -+.....|... +...| T Consensus 449 ~~~~~~~~-------~~v~~Gi~s~e~~l~~~~~~~eeea~~el~ri~~E~~~~~p~~~------~~gg~ 505 (505) T protein:vir:79 449 ESKRAADL-------QAVQAQVMPKKQFLMRNYGLDEEEADEWLAQIDAENSTAEPEFN------QFGGD 505 (505) T ss_pred HHHHHHHH-------HHHHcCCCCHHHHHHhcCCCChHHHHHHHHHHHHhccccCCCch------hccCC Confidence 76654433 33444421 1223333332211 00000001110 11111 No 134 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=98.87 E-value=1.8e-08 Score=62.98 Aligned_cols=405 Identities=12% Similarity=0.020 Sum_probs=173.1 Q ss_pred CchhhHHHHHhhhHHHHHHHHHH--HHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARM--GLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) ++..|.-.|+...+.-+..+.+. .+..+..-.-..+...+...+..... .-.+.--.+++++.||+..+.=.+.+ T Consensus 20 ~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~i~~~~~~~~~~~~~~~~~---~~~~~ki~~~~~~~Ivd~~~~~l~g~ 96 (479) T protein:vir:79 20 STINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDF---TKVNNKAINNYHKLLVDQKVGYSVGN 96 (479) T ss_pred ChhHHHHHHHHHHhhhhHHHHHHHHHHhccCCccccccccccccccccccc---ccCcceeecchHHHHHHHHHhhhhcC Confidence 66777767777665444322111 11111100000000111111100000 00111134789999999999999999 Q ss_pred CcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcc-cccccccC----------- Q lcl|Aclame:pro 79 NPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDW-NLPATKGR----------- 146 (449) Q Consensus 79 ~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~-~~Pl~~~~----------- 146 (449) ++++...++. . ...++.+...++...+.++.+.+..||.|++++.++.+..+ -..+++.. T Consensus 97 p~~~~~~~~~-~-------~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~d~~~~~ 168 (479) T protein:vir:79 97 PIVFNADDDN-L-------TKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQR 168 (479) T ss_pred CceeccCCHH-H-------HHHHHHHHhcCHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEccceeEEEEeCCCCC Confidence 9997543321 1 12233444446677788888888999999999988533221 11111110 Q ss_pred cee-eEEEeccccCChhhhhccccccccCCceeEEeeecccCC---------------Ccc----ceEEccce---eeec Q lcl|Aclame:pro 147 GLQ-KVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNG---------------SSR----RVDIHPDR---VFIL 203 (449) Q Consensus 147 ~l~-~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~---------------~~~----~~~IH~SR---li~~ 203 (449) -+. .++. |...-..+... ..-.-|..-..|.+.....+. ... ...-|.-. ++.| T Consensus 169 ~~~~~ir~-y~~~~~~~~~~--~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~ 245 (479) T protein:vir:79 169 ELVAFIRF-YYIEDIDGNKI--KRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPF 245 (479) T ss_pred ceEEEEEE-EEEeecCCceE--EEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCcccEEEe Confidence 011 1111 11000000000 000000000111111000000 000 00112222 2333 Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc Q lcl|Aclame:pro 204 GDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND 283 (449) Q Consensus 204 ~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (449) .+ ..+|.|.++.+..-+..++.+....+..+-..+...+.++ +. .+...++... .+. ... T Consensus 246 ~n-n~~g~sd~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~--------g~---~~~~~~~~~~-------~~~-~~~ 305 (479) T protein:vir:79 246 KN-NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLK--------EY---PGTSLQEFID-------NIR-YYK 305 (479) T ss_pred cC-CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeee--------cC---Cccccccchh-------hhh-hcc Confidence 33 3468888888877777777765555544322222222111 11 0111111111 111 112 Q ss_pred ceeecCCCceEE--eecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHHH----HHHHHHHHHhhhHHH Q lcl|Aclame:pro 284 VLMTTQGATVTP--LVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKYF----NARCQSRRVDLSFEI 357 (449) Q Consensus 284 ~~l~~~~ed~~~--~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~ny----yd~I~~~Qe~~~~p~ 357 (449) ++.++++.+++. .+.+..++...++.+.+.|...+.+|-.-. ...|+.|+.-++.- ...+..++..+...+ T Consensus 306 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~---~~~gn~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l 382 (479) T protein:vir:79 306 SIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPES---QNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAI 382 (479) T ss_pred ceecCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCcccccc---ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 233445555444 556677899999999999999999996422 12233333233332 223333333333334 Q ss_pred HHHHHHHHHH-hc--CC--CCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccC-H-HHHHHHh-----cC Q lcl|Aclame:pro 358 EDFCDKLIEL-KI--ID--AVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFS-R-EEIRTAA-----GY 425 (449) Q Consensus 358 ~~~l~~l~~~-~~--~~--~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~-~-~e~r~~~-----~~ 425 (449) .+++..++.. +. +. .+.+++|.|++-...++++.|++..+.+...+.-.-....+.++ + +|+.... .. T Consensus 383 ~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~~~~~~a~~~~kl~g~iS~et~l~~l~~v~d~~~E~~ri~~E~~~~~ 462 (479) T protein:vir:79 383 RELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQK 462 (479) T ss_pred HHHHHHHHHHHhccCCCccccccceEEeCCCCCcCHHHHHHHHHHHhccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHH Confidence 4443333222 11 11 13478999999999999999988766543322211111112222 1 2332110 01 Q ss_pred CCCCCCCCCCCCcchhh Q lcl|Aclame:pro 426 DNDDEEPLGEEDGDEED 442 (449) Q Consensus 426 ~~~~~~~~~~~~~~ee~ 442 (449) +.....+.......+|. T Consensus 463 ~~~~~~~~~~~~~~~e~ 479 (479) T protein:vir:79 463 EYDDLIPNNQDGVIDET 479 (479) T ss_pred HHHhccCcccCCCcCcC Confidence 11110111111111111 No 135 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=98.86 E-value=1.4e-08 Score=63.58 Aligned_cols=378 Identities=11% Similarity=0.007 Sum_probs=168.2 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHH-cCchhHHHHhhhHHHHhcCC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYR-RGGIAHGAVEKLVGKCWQTN 79 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~-~~~l~r~iVd~pa~d~~r~~ 79 (449) |..++---...... .-+.|+..... -.-|. ++-.+ .+.. -+.++...|+ ..+++++|||.+++=+.=+| T Consensus 1 ~~~~~i~~L~~~~~---~~~~r~~~~~~-yY~g~-~~~~~----~~~~-~p~~~~~~~~~v~nw~~~iVds~a~rl~~~G 70 (409) T protein:vir:94 1 MTEKGIGYLRFKLS---VHKRRAEMRYD-QYAMK-YVDRF----KGIT-IPQALSQQYRSILGWCAKGVDSLADRLVFRE 70 (409) T ss_pred CCHHHHHHHHHHHH---HHhHHHHHHHH-Hhccc-Cchhh----cChh-hhHHHHHHHhhhcchhHHHHHHhHhhcccCc Confidence 87776532222111 01111111000 01111 10000 0111 2234554554 33678999999999776677 Q ss_pred cEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCceeeEEEecccc Q lcl|Aclame:pro 80 PEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRGLQKVSVSWAGS 158 (449) Q Consensus 80 ~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~l~~i~v~~~~~ 158 (449) |+. ++.... ..++ .+++-.+..++.+-+.+||-|++++.-+ ||...-.++.+.......++..+ . T Consensus 71 f~~------~d~~l~----~i~~---~N~ld~~~~~~~~~aliyG~sf~~v~~~~dg~~~i~~~sp~~~~~i~D~~~~-~ 136 (409) T protein:vir:94 71 FEN------DDFTVN----EIFE---ENNPDIFFDSAVLSSLIASCSFTYISKGENDAVRLQVIEAVNATGIIDPITG-L 136 (409) T ss_pred ccC------CchHHH----HHHH---hcChhHHHHHHHHHHHHhcceeEEEecCCCCceEEEEeccceEEEEEecCCC-c Confidence 642 111111 1121 1123334555666666888888777653 23222222222211111111100 0 Q ss_pred CChh-h-hhcc----ccccccCCc-eeEEeeecccCCCccceEEccce---eeeccCC----CCCcchhH-HHHHHHHHH Q lcl|Aclame:pro 159 LKVA-E-WDTG----INSKTYGQP-KLWKYTERLPNGSSRRVDIHPDR---VFILGDY----SEDAIGFL-EPAYNAFVS 223 (449) Q Consensus 159 i~~~-~-~~~D----p~s~~yg~P-~~y~i~~~~~~~~~~~~~IH~SR---li~~~~~----~~~G~s~l-~~~~~~l~~ 223 (449) +... . +..| +....++.| +.|++.. .++.. ...-|+-. +++|.++ ..+|.|.+ +++..-... T Consensus 137 ~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~n~~g~vPvV~f~n~~~~~~~~G~s~I~e~v~~l~da 213 (409) T protein:vir:94 137 LTEGYAVLERDENNNVVLEAHFLPDRTDYYYR--DSRNN-ISIANPTGHPLLVPIIHRPDAVRPFGRSRITRSGMYWQSN 213 (409) T ss_pred eeeeEEEEEecCCCceEEEEEEecCcEEEEEe--cCcee-EeeeCCCCCcceEEeccccccccccCccccchhHHHHHHH Confidence 1000 0 0011 111122222 1111110 01111 11124333 3445443 24688877 666665555 Q ss_pred HHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCC--ceEEe-eccc Q lcl|Aclame:pro 224 LEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGA--TVTPL-VTSV 300 (449) Q Consensus 224 ~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e--d~~~~-~~~l 300 (449) +.++..-..-.. .-+........+ +...+ .....+.....++..... ..+++ ++.++ ++++ T Consensus 214 ~~r~~~~~~~~~-----e~~a~pqr~i~G------~d~d~--~~~~~~~~~~~~i~~~~~---d~dg~~~~v~q~~~~~l 277 (409) T protein:vir:94 214 AKRTLERADVTA-----EFYSFPQKYVTG------LSDDA--EPMETWKATVSSMLQFTK---DEDGDKPTLGQFTQPSM 277 (409) T ss_pred HHHHHHHHHHHH-----HHhcChhheeEe------cCCCC--cccchhhhhHHHhhcCCC---CCCCCCceEEecCCCCh Confidence 555542211110 001111000011 11111 111222222222211100 01122 24333 3356 Q ss_pred CChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHH-h--cCCC Q lcl|Aclame:pro 301 ADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-----QKYFNARCQSRRVDLSFEIEDFCDKLIEL-K--IIDA 372 (449) Q Consensus 301 sgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD-----~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~-~--~~~~ 372 (449) .+.-+.+.....++|+.+++|..-|-|.+. +.++++ ...-...++.+|+.+...+.+.+ +|+.. . .... T Consensus 278 ~~~~~~l~~~~~~~a~~t~lP~~~lg~~~~--NpsSa~Al~a~~~~L~~~a~~k~~~fg~~~~~~~-rla~~i~~~~~~~ 354 (409) T protein:vir:94 278 SPFTEQLRTAAAGFAGETGLTLDDLGFVSD--NPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVA-YLAACLRDDAPYL 354 (409) T ss_pred hHHHHHHHHHHHHHhhhcCCCHHHhccccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCCcc Confidence 777889999999999999999766655542 434443 23344455566655555555554 34332 2 2223 Q ss_pred CC---CceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCC Q lcl|Aclame:pro 373 VA---KKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDD 429 (449) Q Consensus 373 ~~---~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~ 429 (449) ++ +..+.|.|+...+..+.|.+ |+++.+++++|. ...+.+-+++..|+..++ T Consensus 355 ~~~~~~~~v~W~p~~~~~~~~~a~~----aDa~~Kl~~ag~-~~~~~~~~~~~lG~~~~d 409 (409) T protein:vir:94 355 REQFRKTKPKWEPLFEADASMLSLI----GDGAIKLNQAIP-EFINKDTIRDLTGIEGGE 409 (409) T ss_pred ccccccceEEeccCCCcchHHHHHH----HHHHHHHHHhcc-cccchhHHHHHcCCCCCC Confidence 44 46888999888886655444 589999999873 233557788999998887 No 136 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=98.85 E-value=2.6e-08 Score=62.13 Aligned_cols=393 Identities=11% Similarity=0.036 Sum_probs=167.2 Q ss_pred CchhhHHHHHh-hh------HHHHHHHHHHHHHHHHhhcCcccccchhccCCcccC-CHHHHHHHHHc------------ Q lcl|Aclame:pro 1 MTDKLTLAVNH-AL------NDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELV-TYENLYSLYRR------------ 60 (449) Q Consensus 1 ~~~~~~~~v~~-~~------~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~-~~~~l~~~Y~~------------ 60 (449) |.+=..-.-+. ++ ..-.++. ..+........+ +.. .+..+..+|.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~i~~~~~------------~~~~~~~~l~~Yy~g~~~i~~~~~~~~ 66 (470) T protein:vir:99 1 MKDINYGRDKVTGNSSFIFPKGEKLTS--NELLGFIAYNET------------VLKPRYRENMKLYLGKHKILTAPEKET 66 (470) T ss_pred CccccCCcccccCCceEEeCCCCCcCH--HHHHHHHHHHHH------------hhHHHHHHHHHHhccccccccCccccc Confidence 43221100000 00 0000000 000000000000 000 01222233321 Q ss_pred -------CchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec Q lcl|Aclame:pro 61 -------GGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR 133 (449) Q Consensus 61 -------~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~ 133 (449) ..++++||+..+.=.+.+++++...++....+ .+...++ ..++...+.++.+.+..||.|++++.++ T Consensus 67 ~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~~d~~~~~---~l~~~~~---~n~~~~~~~~~~~~~~~~G~~~~~v~~d 140 (470) T protein:vir:99 67 GADNRIVVNSAKYVVDVYNGYFCGIEPKLALLNDSSKID---EIARWNR---QENFFDTINEISKQCDIFGRSIASIYQG 140 (470) T ss_pred CCcceeecchHHHHHHHHhhhhccCCeeEeeCCchhHHH---HHHHHHH---hcCHhHHHHHHHHHHHhcCeeEEEEEeC Confidence 36899999999999999999876543322211 2222221 2256677888888899999999999885 Q ss_pred C-CCcccccccccCc-----------eeeEEEeccccCChhhhhcccccc----ccCCceeEEeeecccC--CCccceEE Q lcl|Aclame:pro 134 D-EKDWNLPATKGRG-----------LQKVSVSWAGSLKVAEWDTGINSK----TYGQPKLWKYTERLPN--GSSRRVDI 195 (449) Q Consensus 134 d-~~~~~~Pl~~~~~-----------l~~i~v~~~~~i~~~~~~~Dp~s~----~yg~P~~y~i~~~~~~--~~~~~~~I 195 (449) . |..-...+++... +..+..+|... .+.... -|..=..|.+.....+ ........ T Consensus 141 ~dg~~~i~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (470) T protein:vir:99 141 EDARPHLMYSSPNHAFIIYDDTVQRQPLAFVHYQIDN-------SNNWTDAYGVIQYADKFYKFKGYDIEEDTNAAGYAI 213 (470) T ss_pred CCCeEEEEEEccceeEEEEcCCCCcceEEEEEEEEEe-------cCCeeEEEEEEEecCeEEEEEecccccccccccccc Confidence 3 3322222222211 11111111100 000000 0111122222211100 01112234 Q ss_pred cccee---eeccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHH Q lcl|Aclame:pro 196 HPDRV---FILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFN 272 (449) Q Consensus 196 H~SRl---i~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 272 (449) |+--. +.|.+ ...|.|.++.+..-+..++.+....+..+-..+...+.+. +. .... ++..+... T Consensus 214 ~~~g~vPvv~~~n-~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~--------g~---~~~~-~~~g~~~~ 280 (470) T protein:vir:99 214 NPYGLVPAVEFFE-NEERQGIFDSIKTLINALDKVISQKANQVEYFDNAYMYMI--------GF---KLPE-DDEGNPKF 280 (470) T ss_pred cCCCccceEeecC-CCCCCcchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeee--------cC---Cccc-ccccchhh Confidence 55322 22322 3468888988877777777765554443322222222221 10 0000 01111111 Q ss_pred HHHHHHhccccceee-----cCCCceEEe--ecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHH----H Q lcl|Aclame:pro 273 EVAGEINRGNDVLMT-----TQGATVTPL--VTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQK----Y 341 (449) Q Consensus 273 ~~~~~~~~~~~~~l~-----~~~ed~~~~--~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~----n 341 (449) .+... ....+ +.+.+++.+ +.+..++...++.+.+.|...+++|- ..++.. +|+.|+.-++ . T Consensus 281 ----~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~-~~~~~~-~~n~Sg~Ai~~~~~~ 353 (470) T protein:vir:99 281 ----DFKNN-RVLYVSQLDPDTNPQIGFIAKPDADQMQENLIQHLTDFIFMMAMVPN-IQDKNF-AGNSSGVALQYKLFA 353 (470) T ss_pred ----hhhhc-ceeeecCCCCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCCcc-cccccc-ccCchHHHHHHHHHH Confidence 11111 11111 223345555 45567889999999999999999995 333332 2333322232 2 Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH-hc-CC---CCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCH Q lcl|Aclame:pro 342 FNARCQSRRVDLSFEIEDFCDKLIEL-KI-ID---AVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSR 416 (449) Q Consensus 342 yyd~I~~~Qe~~~~p~~~~l~~l~~~-~~-~~---~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~ 416 (449) -...++.+|..+...+.+++..++.. +. +. ...++++.|+|-...++.|.|++..+.+..++.-.-....+-+++ T Consensus 354 l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~~~~p~~~~e~a~~~~kl~giis~et~l~~l~~vd~ 433 (470) T protein:vir:99 354 MKNKADSKERKFDKSLMQLYRIVLATLFNNKQDQELWSELDFKFTRNLPEDMASAIDNAKNAEGIVSKKTQLGMIPDIEP 433 (470) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccceEEeCCCCCcCHHHHHHHHHHHhccCCHHHHHHhCCCCCH Confidence 33334444444444454444433322 11 11 224789999999999999999998876544322111111223343 Q ss_pred H-HH---HHHh--------cCCCC-CCCCCCCCCcchhh Q lcl|Aclame:pro 417 E-EI---RTAA--------GYDND-DEEPLGEEDGDEED 442 (449) Q Consensus 417 ~-e~---r~~~--------~~~~~-~~~~~~~~~~~ee~ 442 (449) + |+ .++. ...++ +....++ ++|++ T Consensus 434 ~~E~eri~~E~~~~~~~~~~~~~~~d~~~~d~--~~ee~ 470 (470) T protein:vir:99 434 DAEMKQIAKEKADAIKQTQQLSMPIDILKRDN--NAEEE 470 (470) T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCC--CccCC Confidence 3 22 1110 01111 1111111 11111 No 137 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=98.82 E-value=3.6e-08 Score=61.37 Aligned_cols=414 Identities=11% Similarity=0.030 Sum_probs=172.3 Q ss_pred Cchh---hHHHHH-hhhH-HHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHH Q lcl|Aclame:pro 1 MTDK---LTLAVN-HALN-DARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKC 75 (449) Q Consensus 1 ~~~~---~~~~v~-~~~~-~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~ 75 (449) |.+. +.-.++ |... ..+... ...+.. |.. +........+ ......--....+++.||+..+.=+ T Consensus 37 ~~~~~~~i~~~i~~~~~~~~~r~~~-~~~yY~---g~~---~~i~~~~~~~----~~~~~~~ri~~n~~k~Ivd~~~~yl 105 (501) T protein:vir:96 37 MVNNWELLKNFINHHKLRQAPRIQE-LLDYAR---GEN---HDVLKSGRRK----DNEMADKRAVHNYGRMISKFKTGYL 105 (501) T ss_pred cCChHHHHHHHHHHHHHHHHHHHHH-HHHHhc---CCC---CcccCccccC----ccccccceeecchHHHHHHHHhhhh Confidence 2221 221121 1111 011111 111111 110 1111000000 0001111234678999999999999 Q ss_pred hcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccC-------- Q lcl|Aclame:pro 76 WQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGR-------- 146 (449) Q Consensus 76 ~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~-------- 146 (449) +-+++++...++.+.......+..-++ ..++...+.++.+.+..||.|++++..+. |...-..+++.. T Consensus 106 ~g~p~~~~~~~~~~~~~~~~~l~~~~~---~n~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~i~~~~p~~~~~v~d~~ 182 (501) T protein:vir:96 106 AGNPIRVEYDDNDDNSQNDDAIKRIGR---INDLDSLNRTLIRDLSQTGRAYEVIYRSEYDETRIKRLSPLETFVIYDNS 182 (501) T ss_pred cccCeeEeeCCccchhHHHHHHHHHHH---hcCHHHHHHHHHHHHhhcCeEEEEEEEcCCCceEEEEEccceeEEEEcCC Confidence 999999876665544433333333222 12566678888888899999999998853 322222222211 Q ss_pred ----ceeeEEEeccccCChhhhhccccccccCCc-eeEEeeecccCCCccceEEccc-e--eeeccCCCCCcchhHHHHH Q lcl|Aclame:pro 147 ----GLQKVSVSWAGSLKVAEWDTGINSKTYGQP-KLWKYTERLPNGSSRRVDIHPD-R--VFILGDYSEDAIGFLEPAY 218 (449) Q Consensus 147 ----~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P-~~y~i~~~~~~~~~~~~~IH~S-R--li~~~~~~~~G~s~l~~~~ 218 (449) -+..++.+......... .--.++-| ..|.+... .+.......-|.- + ++.|.+ ...|.|.++++- T Consensus 183 ~~~~~~~~v~~~~~~~~~~~~-----~~~~vyt~~~i~~~~~~-~~~~~~~~~~~~~g~vPvv~~~n-n~~g~sd~e~v~ 255 (501) T protein:vir:96 183 LEDNSIAAVRYYNRGTLQSAK-----DVVEIYTDEHIYTLDAS-DDFNEISVTTHAFGTVPITEYLN-NIDGIGDYETEL 255 (501) T ss_pred CCCceEEEEEEEEeecCCCcE-----EEEEEEcCCcEEEEeeC-CCceeccccccCCCccceEEecC-CccCCCchhhhH Confidence 11112211100000000 00000011 11222100 0000001122332 2 233433 346889999888 Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHH-HHHHHhcccccee-ecCCCc--eE Q lcl|Aclame:pro 219 NAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNE-VAGEINRGNDVLM-TTQGAT--VT 294 (449) Q Consensus 219 ~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l-~~~~ed--~~ 294 (449) .-+..++.+....+..+...+...+.+. +. ......+....+.. .+-.. ...+... ...+-+ |- T Consensus 256 ~liDa~d~~~s~~~~~~~~~~~~~l~i~--------G~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 323 (501) T protein:vir:96 256 YLIDLYDSAESDTANHMSDMADAILAIY--------GD---LALPKGMQASDMKRTRLMQL-KPPKSADGKEGTVKAEYL 323 (501) T ss_pred HHHHHHHHHHHHHHHHHHHhcCceeeee--------cc---cccCcccchhhhhhcCeeee-cccccccccccCcceeeE Confidence 7777777776665554433222222221 10 00000111111100 00000 0000000 011123 33 Q ss_pred EeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHH----HHHHHHHHHHHhhhHHHHHHHHHHHHH-h- Q lcl|Aclame:pro 295 PLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQK----YFNARCQSRRVDLSFEIEDFCDKLIEL-K- 368 (449) Q Consensus 295 ~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~----nyyd~I~~~Qe~~~~p~~~~l~~l~~~-~- 368 (449) ..+.+.+++...++.+.+.|...+++|-.-+ |.. +++.|+.-++ .....++.+|..+...+.+++..++.. . T Consensus 324 ~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~-~~~-~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~ 401 (501) T protein:vir:96 324 TKSYDVSGAEAYKTRLNRDIHIFTNTPDMSD-TNF-SGNTSGEALKYKLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSL 401 (501) T ss_pred eccCCHHHHHHHHHHHHHHHHHHhCCcccCc-ccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 4556678999999999999999999995333 322 2333322232 233444444444555555554443322 1 Q ss_pred --cCCC--CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccC-H-HHHH---HH-hcCCCCC-CCCCCCCC Q lcl|Aclame:pro 369 --IIDA--VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFS-R-EEIR---TA-AGYDNDD-EEPLGEED 437 (449) Q Consensus 369 --~~~~--~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~-~-~e~r---~~-~~~~~~~-~~~~~~~~ 437 (449) .+.. ..++.+.|+|-...++++.|++..+.+..++.-.-....+.++ + .|+. ++ ...+... .....+.. T Consensus 402 ~~~~~~~d~~~i~i~f~~~~p~n~~e~ad~~~kl~g~iS~et~~~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~ 481 (501) T protein:vir:96 402 VNEFKDFDESLLKITFTPNLPKSLNEQVSILTGLGGQVSQETALSLSGLVESPNEELDKINKEMSEIDFKGYSNDFNEHV 481 (501) T ss_pred cccccccccccceEEeCCCCCcCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHhhccccccchhhcc Confidence 1111 2368899999999999999998887765433211111122332 3 3332 11 1111000 00000000 Q ss_pred cchhhcccccCC Q lcl|Aclame:pro 438 GDEEDKATDSAA 449 (449) Q Consensus 438 ~~ee~~~~~~~a 449 (449) ..+.+...+..| T Consensus 482 ~~~~~~~~e~~~ 493 (501) T protein:vir:96 482 GKYTDEVKETHT 493 (501) T ss_pred cccCCcCCCCCC Confidence 000011111111 No 138 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=98.81 E-value=3.9e-08 Score=61.22 Aligned_cols=403 Identities=7% Similarity=-0.013 Sum_probs=164.6 Q ss_pred CchhhHH-------HHHhhhHHHHHHHHHHHH-HHHHhhcCcccccchhccCC-cccCCHHHHHHHHHcCchhHHHHhhh Q lcl|Aclame:pro 1 MTDKLTL-------AVNHALNDARMARARMGL-MVPTMGLDNKRHSAWCEYGF-PELVTYENLYSLYRRGGIAHGAVEKL 71 (449) Q Consensus 1 ~~~~~~~-------~v~~~~~~~~~~~~~~~~-~~~~~g~~t~r~~~~~~~~~-~~~~~~~~l~~~Y~~~~l~r~iVd~p 71 (449) |.+.++- -++...+.-..-..|... ..--.|. + +-.....-+ .....+....+..-...+++.||+.. T Consensus 16 ~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~Yy~g~-~--~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~ivd~~ 92 (478) T protein:vir:10 16 VVEQIKPKYETQEEMILRLVREHKENIDNITMGERYYNHH-P--DILDAPFKRDVNGDYDETKPDWRMYTNYHQNLVDQK 92 (478) T ss_pred HHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccc-c--cccccchhhhcccccccccccceeccchHHHHHHHH Confidence 1111000 000011000000011110 0000110 0 000000000 00000011111122467999999999 Q ss_pred HHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccC---- Q lcl|Aclame:pro 72 VGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGR---- 146 (449) Q Consensus 72 a~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~---- 146 (449) +.=++.+++++..+++.. . +.++.++..++...+.++.+.+..||.+++++.++. +..-...+++.. T Consensus 93 ~~yl~g~p~~~~~~~~~~----~----~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~~~~~~p~~~~~v 164 (478) T protein:vir:10 93 VAYAVANPVTFGVDNDKA----L----KQIQHTLNHKWDDKLVDILTAASNKGIEWVQPYVDEEGEFKTFRVPAEQAVPI 164 (478) T ss_pred hhhhcccCceeecCChHH----H----HHHHHHHhccHHHHHHHHHHHHhhCCeEEEEEEecCCCceEEEEEcccceEEE Confidence 999999999986544321 1 122333334566777788888889999999998853 322111122111 Q ss_pred -------ceeeEEEeccccCChhhhhcccccccc---CCceeEEeeecc--------cCCCcc----ceEEccce---ee Q lcl|Aclame:pro 147 -------GLQKVSVSWAGSLKVAEWDTGINSKTY---GQPKLWKYTERL--------PNGSSR----RVDIHPDR---VF 201 (449) Q Consensus 147 -------~l~~i~v~~~~~i~~~~~~~Dp~s~~y---g~P~~y~i~~~~--------~~~~~~----~~~IH~SR---li 201 (449) .+..+..++.. . +-..-.+ +.-.+|...... ..+... +...|.=- |+ T Consensus 165 ~d~~~~~~~~~~ir~~~~--~------~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv 236 (478) T protein:vir:10 165 WTNKERDELQAFIRVYEL--D------GAERVEYWTKDDVTFYELKEGQLIPDFYRSEDHIQPHYYQGNKLMSWGRVPFI 236 (478) T ss_pred EcCCCCCceEEEEEEEee--e------CceEEEEEeCCcEEEEEecCCeeeccccccccccccceecccccccCCcceEE Confidence 11111111110 0 0000000 111112111000 000000 00112211 12 Q ss_pred eccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 202 ILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRG 281 (449) Q Consensus 202 ~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (449) .|.+ ...|.|.++.+..-+..++.+....+..+-..+...+.+. + ..+....+... .+. . T Consensus 237 ~~~n-~~~g~sd~e~v~~liDa~~~~~S~~~~~~~~~~~~~~~~~--------g---~~~~~~~~~~~-------~~~-~ 296 (478) T protein:vir:10 237 PFKN-NPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILK--------G---YEGEDMKDFMH-------NLK-Y 296 (478) T ss_pred Eecc-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCcceeee--------c---CCcccccchhh-------hhh-h Confidence 2222 2358888888877777777766665554432222222111 1 01111111111 111 1 Q ss_pred ccceeec--CCCc--eEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh-HHH-H---HHHHHHHHHh Q lcl|Aclame:pro 282 NDVLMTT--QGAT--VTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-QKY-F---NARCQSRRVD 352 (449) Q Consensus 282 ~~~~l~~--~~ed--~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD-~~n-y---yd~I~~~Qe~ 352 (449) ...+.+. ++.+ |-..+.+..++...++.+.+.|...+++|-. -++.- +| |.++. ++. | ...+..++.. T Consensus 297 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~-~~~~~-~~-n~Sg~Ai~~~~~~l~~k~~~~~~~ 373 (478) T protein:vir:10 297 YKAISVAGESGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDF-QQDKF-GN-SPSGIALKFMYSNLDLKANKLKNK 373 (478) T ss_pred CceeEecCCCCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCcCc-Ccccc-cc-chHHHHHHHHHHHHHHHHHHHHHH Confidence 1223332 2234 4445567778999999999999999999953 22222 23 33443 332 2 2233333333 Q ss_pred hhHHHHHHHHHHHHHhcCCC--CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCcccc-CH-HHHH---HH--- Q lcl|Aclame:pro 353 LSFEIEDFCDKLIELKIIDA--VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAF-SR-EEIR---TA--- 422 (449) Q Consensus 353 ~~~p~~~~l~~l~~~~~~~~--~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~-~~-~e~r---~~--- 422 (449) +...+.+++ +|+..-.+.. ..++.+.|+|-...+++|.|++..+.+...+.-.-....+-+ ++ .|+. ++ T Consensus 374 ~~~~l~~~~-~li~~~~~~~~d~~~i~i~f~~~~p~~~~e~~~~~~~~~g~iS~et~i~~~~~v~d~~~E~~ri~~E~~~ 452 (478) T protein:vir:10 374 TLTALQELL-QYIIDFYRLDVRVQDIEITFNFNVMVNELENSQIAMNSTGLLSKETILGNHSWVQDPVAEMERIEQENIE 452 (478) T ss_pred HHHHHHHHH-HHHHHHhCCCcccccceEEeCCCCCCCHHHHHHHHHHHhCCCChHHHHHhCCCCCCHHHHHHHHHHHHHH Confidence 333344443 3443333322 247899999999999999998877655433221111111222 33 2321 11 Q ss_pred -hc-CCCCCCCCCCCCCcchhhcccc Q lcl|Aclame:pro 423 -AG-YDNDDEEPLGEEDGDEEDKATD 446 (449) Q Consensus 423 -~~-~~~~~~~~~~~~~~~ee~~~~~ 446 (449) .. .........+++.+.+++..+| T Consensus 453 ~~~~~~~~~~~~~d~~~~~~~d~~~e 478 (478) T protein:vir:10 453 LNQQLPDIEEGLNDEQQRQSEDNQSE 478 (478) T ss_pred HHHhccccCCCCcccccccCcCCCCC Confidence 01 1111111111221222222222 No 139 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=98.81 E-value=4e-08 Score=61.17 Aligned_cols=422 Identities=11% Similarity=-0.033 Sum_probs=161.4 Q ss_pred CchhhH-----------------HHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCch Q lcl|Aclame:pro 1 MTDKLT-----------------LAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGI 63 (449) Q Consensus 1 ~~~~~~-----------------~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l 63 (449) ||.-.+ .-++...+.-.-.+.|+...--- .-|. +.. .. .+.. -+.++...+....+ T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~e~~~i~~L~~~~~~~~~r~~~l~~Y-Y~G~--~~i-~~--~~~~-~p~~~~~~~~v~n~ 73 (504) T protein:vir:99 1 MTEETTSASKFTFRIPELNDDVVDKVNGLYQQLVDRTPRNLLRASF-YDGK--YAI-RQ--IGNL-IPPEYLRTATVLGW 73 (504) T ss_pred CCccCCcccccccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-Hhcc--ccc-hh--cccc-ccHHHHHHhhccCc Confidence 332222 11222111111111111110000 0010 000 00 1111 12445555555667 Q ss_pred hHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-CCc--ccc Q lcl|Aclame:pro 64 AHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKD--WNL 140 (449) Q Consensus 64 ~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~--~~~ 140 (449) +++|||.+++-+.=+||++- +++.+ .. .+.+.+++ .++-....++.+-+.+||-|++++.-++ ++. .-+ T Consensus 74 ~~~iVd~~a~rl~~~Gf~~~-d~~~~-~~---~l~~i~~~---N~ld~~~~~~~~~a~iyG~af~~v~~~~d~~~~~~I~ 145 (504) T protein:vir:99 74 SAKAVDTLARRCNLESFVWP-DGDYG-SI---GGPDVWDE---NFFATKANNAMVSSLIHGPAFLINTEGGAGEPDSLIH 145 (504) T ss_pred HHHHHHHHHhhhccceeeCC-CCChh-hH---HHHHHHHh---cChhhHHHHHHHHHHhhCceeEEEecCCCCCceeEEE Confidence 89999999998888888752 22111 11 12222211 1233345566666668888887776542 221 111 Q ss_pred cccccCceeeEEEeccccCChh--hhhcc----ccccccCCce-eEEeeecccCCCccceEEccce--eeeccCCC---- Q lcl|Aclame:pro 141 PATKGRGLQKVSVSWAGSLKVA--EWDTG----INSKTYGQPK-LWKYTERLPNGSSRRVDIHPDR--VFILGDYS---- 207 (449) Q Consensus 141 Pl~~~~~l~~i~v~~~~~i~~~--~~~~D----p~s~~yg~P~-~y~i~~~~~~~~~~~~~IH~SR--li~~~~~~---- 207 (449) ++.+..-+...++.. ..+... .++.| +....++-|. .|++.....+.......-|+-. ++.|.+++ T Consensus 146 ~~sP~~~~~iyD~~~-~~~~~a~~~~~~d~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~gvPvV~~~n~~~~~~ 224 (504) T protein:vir:99 146 VKSAMQATGEWNSRR-NAMDSLLSITSRDAEGHPTGIALYEDGVTVTADMDDDGDWHADVRTHKLGVPVEVLPYKPREDR 224 (504) T ss_pred EeccceeEEEEeCCC-CceeEEEEEEEecCCCeEEEEEEEcCCcEEEEEEcCCceeeeccccCCCCcceEEecccccCcc Confidence 222221110001000 000000 01111 1122223332 2333211100000001112211 45555432 Q ss_pred CCcchhH-HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc--c Q lcl|Aclame:pro 208 EDAIGFL-EPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND--V 284 (449) Q Consensus 208 ~~G~s~l-~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 284 (449) ..|.|.+ +++..-+..++++..-......-.+..++.+ .++. +.... .........+...+.++...-. . T Consensus 225 ~~G~sei~~~v~~l~Da~~~~~~~~~~~~e~~a~p~r~i-----~G~~-~~~~~-~~d~~~~~~~~~~~~~i~~~~~~~~ 297 (504) T protein:vir:99 225 PLGSSRITRPVMSLQQRALKGCIRMDGHADVYSFPQLIL-----LGAD-AKNFR-NKDGSMKPAWQIALARVFALPDDED 297 (504) T ss_pred ccCcccchhhHHHHHHHHHHHHHHHHHHHHHhcchhhhh-----ccCC-ccccc-cccccccchhhhhhhhhhcCCCccc Confidence 3577765 3554444444444322111110001111111 0100 00000 0000111122222222211100 0 Q ss_pred eeecCCC--ceEEe-ecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh-----HHHHHHHHHHHHHhhhHH Q lcl|Aclame:pro 285 LMTTQGA--TVTPL-VTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-----QKYFNARCQSRRVDLSFE 356 (449) Q Consensus 285 ~l~~~~e--d~~~~-~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD-----~~nyyd~I~~~Qe~~~~p 356 (449) ..+..+. ++.++ ++++.++.+.+.....++|+.++||. --||...-.++++++ ....-..+..+|+.+... T Consensus 298 ~~~~~~~~~~~~q~~~~~l~~~~~~l~~~i~~~a~~t~~P~-~~lG~~~~~n~sSa~Ai~~~~~~L~~ka~~k~~~f~~~ 376 (504) T protein:vir:99 298 EPDAARARADVKQFPASSPQPHIEMLEQIAMMFSGETSIPV-ESLGFSNRANPTSADAYIASREDLIAEAEGATDDWSPA 376 (504) T ss_pred cccccCccceeeecCCCChHHHHHHHHHHHHHHHhhhCCCH-HHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1111122 23333 23456677888889999999999995 566754433333332 334555666666666665 Q ss_pred HHHHHHHHHHHh--cCCCCC---CceEEeCCCCCCCHHHHHHHHHHHHHHHHH-------HHHcCCccccCHHHHHH--- Q lcl|Aclame:pro 357 IEDFCDKLIELK--IIDAVA---KKAVIWDDLNEQTGTEKLTNAKTMGEINQT-------MLGSGDNPAFSREEIRT--- 421 (449) Q Consensus 357 ~~~~l~~l~~~~--~~~~~~---~~~~~f~pL~~~sekE~Aei~~~~A~a~~~-------~~~~g~~~~~~~~e~r~--- 421 (449) +.+.+...+... ....++ ++.+.|.|...+|..+.|+...|.+++... +...- -++++|+.. T Consensus 377 l~~~~rla~~~~~~~~~~~~~~~~~~v~w~d~~~~s~a~~aDa~~Kl~~ag~~l~~~~~~l~~~l---g~~~~ei~r~~~ 453 (504) T protein:vir:99 377 FRRSMIRALAIKNGLDRIPPEWKTIDSKFRSPLYLSKAAQADAGAKMLGAGPEWLKETEVGLELL---GLTPQQAKRALA 453 (504) T ss_pred HHHHHHHHHHHhcCCCccccccccceeEecCCCccCHHHHHHHHHHHHhhccccccchHHHHhhc---CCCHHHHHHHHH Confidence 655544333332 222233 468889999999999998877776665321 21111 235544321 Q ss_pred ----Hh---------cCCCCC-CCCCCCCCcchhhcccccCC Q lcl|Aclame:pro 422 ----AA---------GYDNDD-EEPLGEEDGDEEDKATDSAA 449 (449) Q Consensus 422 ----~~---------~~~~~~-~~~~~~~~~~ee~~~~~~~a 449 (449) +. .-++.. ..+.++++...+-++.+++| T Consensus 454 e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~a~~~~~~ 495 (504) T protein:vir:99 454 ERRRASSVSIIEALNRRQQEAATAGEDQDQGAGEPPANEPPA 495 (504) T ss_pred HHHHHhhHHHHHHHhcccCCCCCCCCCCCcCCCCCCCCCCCc Confidence 10 001100 01111111111111222222 No 140 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=98.81 E-value=4e-08 Score=61.12 Aligned_cols=402 Identities=12% Similarity=0.012 Sum_probs=158.6 Q ss_pred CchhhH--HHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDKLT--LAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) |..... |.-++.....+... ...+.. |. +..- ..+..+ ..++.+......++++|||..++=+.=+ T Consensus 13 ~~~~~~~~L~~~~~~~~~r~~~-~~~YY~---G~----~~i~---~~~~~~-~~~~~~~~~~~n~~~~ivd~~~~~l~~~ 80 (485) T protein:vir:24 13 DPAIARDEMVSAFEDQNQNLRS-NTSYYE---AE----RRPE---AIGVTV-PVQMQSLLAHVGYPRLYVDSIAERQAVE 80 (485) T ss_pred chHHHHHHHHHHHHHHHHHHHH-HHHHHh---cc----Cchh---hcCccc-chhhhhhhhccchHHHHHHHHhhhhccC Confidence 444322 33333332222211 111211 11 1100 011111 1233444455678899999999988778 Q ss_pred CcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcc-----c----ccccccCc-- Q lcl|Aclame:pro 79 NPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDW-----N----LPATKGRG-- 147 (449) Q Consensus 79 ~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~-----~----~Pl~~~~~-- 147 (449) ||++- ++.... ..+.+.+++ .++-....++.+.+..||-|++++..+..... . .++++... T Consensus 81 g~~~~--~~~~~~---~~l~~i~~~---N~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~ 152 (485) T protein:vir:24 81 GFRLG--DADEAD---EELWQWWQA---NNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRVEPPTRMYA 152 (485) T ss_pred ceecC--CCchhH---HHHHHHHHh---cChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEEeccceeEE Confidence 88642 211111 112222221 13444566777777889999998887532211 0 11121110 Q ss_pred ---------eeeEEEeccccCChhhhhccccccccCCc-eeEEeeecccCCCc--cceEEccce---eeeccCCC----C Q lcl|Aclame:pro 148 ---------LQKVSVSWAGSLKVAEWDTGINSKTYGQP-KLWKYTERLPNGSS--RRVDIHPDR---VFILGDYS----E 208 (449) Q Consensus 148 ---------l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P-~~y~i~~~~~~~~~--~~~~IH~SR---li~~~~~~----~ 208 (449) +..+..++... ......-.++-+ ..|++... ++.. ....-|+-- |+.|.+++ . T Consensus 153 i~D~~~~~~~~~~~~~~~~~------~~~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~ 224 (485) T protein:vir:24 153 EIDPRIGRPAKAIRVAYDAE------GNEIQAATLYTPNETFGWFRA--EGEWVEWFSDPHGLGAVPVVPLPNRTRLSDL 224 (485) T ss_pred EeeCCcCceeEEEEEEEeec------CCeEEEEEEEcCCcEEEEEec--CCceEeecccccCCCcccEEEeccCcccCCc Confidence 11111111000 000000111111 12222111 1110 001124333 23344332 3 Q ss_pred CcchhHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceee Q lcl|Aclame:pro 209 DAIGFLEP-AYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMT 287 (449) Q Consensus 209 ~G~s~l~~-~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 287 (449) +|.|.+.. +...+..++++...........+..++.+. ..+........+.+ .. .+....+.+.. T Consensus 225 ~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~---G~~~~~~~~~~~~~----~~-------~~~~~~~~i~~ 290 (485) T protein:vir:24 225 YGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIF---GIKPEEIGVDPETG----QT-------LFDAYLARILA 290 (485) T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhc---cCCccccccccccc----cc-------hhhhcccceec Confidence 58887764 444444455543322221111111111110 00000000000000 00 11112223333 Q ss_pred cCCCceEEeecccC---ChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHHHH----HHHHHHHHhhhHHHHH Q lcl|Aclame:pro 288 TQGATVTPLVTSVA---DPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFN----ARCQSRRVDLSFEIED 359 (449) Q Consensus 288 ~~~ed~~~~~~~ls---gl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyy----d~I~~~Qe~~~~p~~~ 359 (449) ..+++.+..+.+-+ ...+.+.....++|+.+++|..-| |..+. +++++ =++.-+ ..++.+|..+.+-+.+ T Consensus 291 ~~~~~~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~f-g~~~~-n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~ 368 (485) T protein:vir:24 291 FEDAEGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYL-STAAD-NPASAEAIRAAESRLIKKVERKNAIFGGAWEE 368 (485) T ss_pred cCCCCceEEeecccchHHHHHHHHHHHHHHhcccCCCHHHh-ccccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 33444444444434 455666667889999999997655 53332 33444 344322 2333333334444444 Q ss_pred HHHHHHHH-hcCCCC---CCceEEeCCCCCCCHHHHHHHHHHHHHHHH------HHHHcCCccccCHH---HHHH---Hh Q lcl|Aclame:pro 360 FCDKLIEL-KIIDAV---AKKAVIWDDLNEQTGTEKLTNAKTMGEINQ------TMLGSGDNPAFSRE---EIRT---AA 423 (449) Q Consensus 360 ~l~~l~~~-~~~~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a~~------~~~~~g~~~~~~~~---e~r~---~~ 423 (449) ++..++.. .....+ .++++.|.+-..+|..+.|+...+.+++.. ++... . -++++ |+++ +. T Consensus 369 ~~~l~~~~~~~~~~~~d~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~--l-~~~~d~~~e~~~~~ee~ 445 (485) T protein:vir:24 369 AMRLAYRLMKGGDVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARKD--M-GYSIAEREEMRRWDEEE 445 (485) T ss_pred HHHHHHHHhcCCCCccccceeeEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHhh--C-CCCHhHHHHHHHHHHHH Confidence 44433332 222222 368899999999999999987777655421 11211 1 12222 2221 10 Q ss_pred ------------cCCC--CCCCCCCCCCcchhhcccccCC Q lcl|Aclame:pro 424 ------------GYDN--DDEEPLGEEDGDEEDKATDSAA 449 (449) Q Consensus 424 ------------~~~~--~~~~~~~~~~~~ee~~~~~~~a 449 (449) ...+ .+.+...+..++++......+| T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~a 485 (485) T protein:vir:24 446 AAMGLGLLGTMVDADPTVPGSPNPTPAPKPQPAIEGGDSA 485 (485) T ss_pred hhhhhhHHHhhcccCCCCCCCCCCCCCCCCccCCCCCCCC Confidence 0011 1111111222222223333344 No 141 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=98.80 E-value=2.2e-08 Score=62.61 Aligned_cols=398 Identities=8% Similarity=0.018 Sum_probs=164.3 Q ss_pred Cchh-hHHHHHh-hhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDK-LTLAVNH-ALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~-~~~~v~~-~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) +..+ |+-.++. ..+..+... ...+..+.--.-..+++............ +.--..++++.||+..+.=.+-+ T Consensus 26 ~~~~~i~~~i~~~~~~~~~~~~-~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~-----~~ki~~n~~~~Ivd~~~~~l~g~ 99 (474) T protein:vir:96 26 TQEEMIIRLINDHKPKIDDITV-GERYYNHDPDVLRLAPKLDNKGEIDPLKP-----DWRMFTNYHQNLVDQKVAYAVAN 99 (474) T ss_pred ChHHHHHHHHHHHHHHHHHHHH-HHHHhccCCcchhccchhccccccccccc-----chhcccchHHHHHHhhhhhhccc Confidence 1111 1111221 111111111 11111111000001111111000000000 00113579999999999999999 Q ss_pred CcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccC----------- Q lcl|Aclame:pro 79 NPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGR----------- 146 (449) Q Consensus 79 ~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~----------- 146 (449) ++++...++.. . ..+++++..+...+..++.+.+..||.|++++.++. |+..-..+++.. T Consensus 100 p~~~~~~d~~~----~----~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~~y~d~~~~~~i~~~~p~~~~~v~d~~~~~ 171 (474) T protein:vir:96 100 PVTFSSDDDKS----L----KTIQEVLNHKWDDKLVDILTAASNKGIEWLQPYIDENGEFKTFRVPAEQAIPIWTNKERD 171 (474) T ss_pred CceeecCchHH----H----HHHHHHHhcCHHHHHHHHHHHHHhcCeeEEEEEecCCCceEEEEEcccceEEEEcCCCCC Confidence 99986543322 1 223333344566677777788888999999998853 322111122211 Q ss_pred ceeeEEEecccc-CChhhhhccccccccCCceeEEeeecc------------cCCCccceEEccceee---eccCCCCCc Q lcl|Aclame:pro 147 GLQKVSVSWAGS-LKVAEWDTGINSKTYGQPKLWKYTERL------------PNGSSRRVDIHPDRVF---ILGDYSEDA 210 (449) Q Consensus 147 ~l~~i~v~~~~~-i~~~~~~~Dp~s~~yg~P~~y~i~~~~------------~~~~~~~~~IH~SRli---~~~~~~~~G 210 (449) .+..+..+|... ....++.+ .++-.+|...... ..+......-|.-..+ .|.+ ...| T Consensus 172 ~~~~~vr~~~~~~~~~~~~yt------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-n~~g 244 (474) T protein:vir:96 172 TLKAFIRYYRLDGAERVEYWT------DSDVTYYEYQDGILIPDYYHGEEHIQSHYYVGNKRVSWGRVPFIPFKN-NPQE 244 (474) T ss_pred ceEEEEEEEeecCceEEEEEe------CCeEEEEEecCCceeeccccccccccccccccccccCCCceeEEEecc-CCCC Confidence 111111111100 00000000 0011111111000 0000001122333322 2222 2358 Q ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeec-C Q lcl|Aclame:pro 211 IGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTT-Q 289 (449) Q Consensus 211 ~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 289 (449) .|.++.+..-+..++.+....+..+-..+...+.+. + ..+....+.. ..+.. ...+.++ + T Consensus 245 ~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~--------g---~~~~~~~~~~-------~~~~~-~~~i~~~~~ 305 (474) T protein:vir:96 245 MSDLFMYKTIIDAMDKRLSDTQNTFDESTELIYILK--------G---YEGQDLDEFM-------RNLKY-YKAINVDGD 305 (474) T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhccceeeee--------c---CCcccccchh-------hhhhc-CceEEecCC Confidence 888888877777777776665544432222222111 1 1111111111 11211 2223333 3 Q ss_pred CCceEEe--ecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHH-HH---HHHHHHHHhhhHHHHHHHH Q lcl|Aclame:pro 290 GATVTPL--VTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKY-FN---ARCQSRRVDLSFEIEDFCD 362 (449) Q Consensus 290 ~ed~~~~--~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~n-yy---d~I~~~Qe~~~~p~~~~l~ 362 (449) +.+++.+ +.+..+....++...++|...+++|-.- ++. -|+ |.+| -++. |. ..+..++..+...+.+++. T Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~-~~~-~~~-n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~ 382 (474) T protein:vir:96 306 GSGVDTIQIEVPVQSSKEYLDMLRDYVIEFGQGVDFQ-QDK-FGN-SPSGIALKFMYSNLDLKANKLKNKTLTALQELLQ 382 (474) T ss_pred CCceeEEeecCChHHHHHHHHHHHHHHHHHhCCcccc-ccc-ccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 4455554 5667799999999999999999999632 222 233 3344 3332 22 3333344334444555444 Q ss_pred HHHHHh-cCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHH--HHHcCCcccc-CH-HHHHHH----h----cCCCCC Q lcl|Aclame:pro 363 KLIELK-IIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQT--MLGSGDNPAF-SR-EEIRTA----A----GYDNDD 429 (449) Q Consensus 363 ~l~~~~-~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~--~~~~g~~~~~-~~-~e~r~~----~----~~~~~~ 429 (449) .++... .-..+.++.+.|+|-...+++|.|++.+. |...+. ++. ..+-+ ++ .|+... . .+++.. T Consensus 383 ~i~~~~~~~~~~~~i~i~f~~~~p~~~~e~~~~~~~-ag~iS~et~~~--~~~~v~d~~~E~~ri~~E~~e~~~~~~~~~ 459 (474) T protein:vir:96 383 YIIDFYKLNIKVQDVEITFNFNVMVNELEQSQIGVQ-SQYLSKETVVT--NHPWVDDPVAELERIEQDNIDFNKQLPPLE 459 (474) T ss_pred HHHHHhCCCcccceeeEEeccCCCcCHHHHHHHHHh-cCCCchHHHHH--hCCCCCCHHHHHHHHHHHHHHHHhcccccc Confidence 333222 21223578999999999999998886532 222211 111 11112 22 222211 0 111111 Q ss_pred CCCCCCCCcchhhcc Q lcl|Aclame:pro 430 EEPLGEEDGDEEDKA 444 (449) Q Consensus 430 ~~~~~~~~~~ee~~~ 444 (449) ........+++++-+ T Consensus 460 ~~~~~~~~d~~~e~~ 474 (474) T protein:vir:96 460 GDANGRAQDNESETN 474 (474) T ss_pred cccccccCCCcccCC Confidence 111111111222111 No 142 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=98.80 E-value=4.1e-09 Score=66.54 Aligned_cols=410 Identities=14% Similarity=0.090 Sum_probs=186.8 Q ss_pred Cch-hhHHHHHhhhHHHHHHHHHHHHHHHHhhcC-cccc---------c-chhccCCcccCCHHHHHHHHHc----Cchh Q lcl|Aclame:pro 1 MTD-KLTLAVNHALNDARMARARMGLMVPTMGLD-NKRH---------S-AWCEYGFPELVTYENLYSLYRR----GGIA 64 (449) Q Consensus 1 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~-t~r~---------~-~~~~~~~~~~~~~~~l~~~Y~~----~~l~ 64 (449) |-. |-=.-++...+.......-.++..+-...| +.-+ . .++.|.-....+-.+|...||+ ++.+ T Consensus 1 ~~~~~~w~~~de~~~~~~~~~~~~~~~~p~~~dG~s~i~~~~~~~~~~~~~~~~~~gg~~~n~~eLI~~YR~ma~~~pEV 80 (533) T protein:vir:58 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) T ss_pred CCCcchhhhhhHHHHHHHhhchhhcccCccCCCCCccccCCCCcchhhhhhhhhhhccccccHHHHHHHHHHhhccCcch Confidence 210 000011111111111111111211111111 1111 0 1122221344465677777764 5788 Q ss_pred HHHHhhhHHHHhcCC--cEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccc Q lcl|Aclame:pro 65 HGAVEKLVGKCWQTN--PEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPA 142 (449) Q Consensus 65 r~iVd~pa~d~~r~~--~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl 142 (449) ..+|+.++.+|+-.- -.+++- +-++.+....+..++.+|+ ++.++..+..|.--++|- ++..... + T Consensus 81 d~AideIvneaiv~d~~~~pV~v-~l~~~e~s~~iK~kI~~ll--df~~~~~~~fR~WYVDGr--iy~Hkii-k------ 148 (533) T protein:vir:58 81 STVLDIIADECTIPNENGNIVDV-VTKDIELAKAILSYLDYVI--NIEKNAYPIIRNMIKYGD--MFLHILE-K------ 148 (533) T ss_pred hhHHHhhhceeeEecCCCceeEe-ecccccccHHHHHHHHHHh--cchhhhhHHHHhhhhcce--eEEEecc-C------ Confidence 999999999986321 011110 1111111222223333443 344555555543334443 3343311 1 Q ss_pred cccCceeeEEEeccccCChh-hhhccccccccCCceeEEeeecc--cCCCccceEEccceeeeccCC-----CCCcchhH Q lcl|Aclame:pro 143 TKGRGLQKVSVSWAGSLKVA-EWDTGINSKTYGQPKLWKYTERL--PNGSSRRVDIHPDRVFILGDY-----SEDAIGFL 214 (449) Q Consensus 143 ~~~~~l~~i~v~~~~~i~~~-~~~~Dp~s~~yg~P~~y~i~~~~--~~~~~~~~~IH~SRli~~~~~-----~~~G~s~l 214 (449) ++.+||..|+.+++..+..- +..++ -++|-+++.. .+.+..+++|+++.++.+..+ ...++|+| T Consensus 149 ~~k~GI~elr~lDPr~i~~vr~~~t~--------~eyyvy~~~~~~~~s~~~~~kI~~daI~y~~SGl~d~~~~~iisyL 220 (533) T protein:vir:58 149 GSDGTIEKFQVVSPYIFSKRYNPETD--------TWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYL 220 (533) T ss_pred CcccchhhheecCCeeeEEEEeeccc--------eEEEeecccccccccCccccccchhheeeeeeccccCCCCceehhh Confidence 13368888877777666432 22233 1333333211 123445688999998887543 33477999 Q ss_pred HHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhhccChHHHHHHHHHHHH-HH--hccccce Q lcl|Aclame:pro 215 EPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLYGVSIDELQDKFNEVAG-EI--NRGNDVL 285 (449) Q Consensus 215 ~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~ 285 (449) .++ +|.|+-+..++ .+|+- +...++.+ ++-+|+.. ..++..+.+....+ .+ .+.++-+ T Consensus 221 hkAiKp~NQLkmiEDAl-----VIYRi-----sRAPeRRvFYIDVGNlpk~---KAeqYl~~im~k~kNklvYDa~TGev 287 (533) T protein:vir:58 221 ESARAIWNQLRLMEDAL-----MLYRV-----VRSVDRRVFYVDVGNVPPD---KINEYLTNIAMQYKRDYWVRNNQNQF 287 (533) T ss_pred hHHHHHHHHHHHHHHHH-----HHHhh-----cCChhheEEEEeecCCCcc---CHHHHHHHHHHhcccceEEeccCCeE Confidence 887 77777665542 33432 11112111 22333322 12222221111100 00 0011111 Q ss_pred ----------ee-----------cCCCceEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch---hHHH Q lcl|Aclame:pro 286 ----------MT-----------TQGATVTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE---DQKY 341 (449) Q Consensus 286 ----------l~-----------~~~ed~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e---D~~n 341 (449) -+ +.+.+++++...--|.-+=+..|...+=-|.++|+++|=.++ +...+++ |.-. T Consensus 288 ~ddrk~m~~~sMlEDyWLpRReGgrgTEI~TLpGg~lgemeDV~YF~kkLy~ALnVP~sRl~~e~-~fgr~~eItRDEiK 366 (533) T protein:vir:58 288 LGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLAEDVEYMLNRLISALKVPKAFIGYEG-DVNAKNTLATQDIK 366 (533) T ss_pred eeccchhhhhhhHhhhcccccCCCccceeeecCCCCCCcHHHHHHHHHHHHHHhCCCeeecCCCC-CCccchhhhHHHHH Confidence 00 123567776543234445567899999999999999995444 4444555 7666 Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC-------cccc Q lcl|Aclame:pro 342 FNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGD-------NPAF 414 (449) Q Consensus 342 yyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~-------~~~~ 414 (449) |...|.++|..+..-+.+ .|++-+.+ .+++|.|.|.-=..-+|-..+|+...+..+++.+-.-.. +--+ T Consensus 367 F~KFI~rLR~rF~~ll~~---qLilk~ii-t~eew~~~f~~Dn~f~ElKe~Eil~~Ri~~l~~~dpyvgk~yi~k~ILr~ 442 (533) T protein:vir:58 367 FNNTIKRIQGFFVEELER---MVRMNKEF-ADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQI 442 (533) T ss_pred HHHHHHHHHHHHHHHHhc---ccccccCc-chhheeeeeeccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcC Confidence 999999999865432222 34443443 357899999999999999999999888888765421110 0012 Q ss_pred CHHHHHHH------h----cCCCCCCC-CCCCCCcchhh------------------------------cccccCC Q lcl|Aclame:pro 415 SREEIRTA------A----GYDNDDEE-PLGEEDGDEED------------------------------KATDSAA 449 (449) Q Consensus 415 ~~~e~r~~------~----~~~~~~~~-~~~~~~~~ee~------------------------------~~~~~~a 449 (449) |. |+.+. . .++.++.+ .....+.+-+- .+..+.+ T Consensus 443 td-ei~~q~e~ie~E~~~~~~~~~~~~~e~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 517 (533) T protein:vir:58 443 PY-DLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFE 517 (533) T ss_pred Ch-hhhHHHHHHHHhhcCCCCCCCCcccccCCcccCccccCcccCCCChhhHhcccCCcccccccccccccchhhh Confidence 22 22211 1 11111100 00000000000 0000000 No 143 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=98.79 E-value=4.5e-08 Score=60.85 Aligned_cols=412 Identities=11% Similarity=-0.009 Sum_probs=168.5 Q ss_pred Cc----------hhhHHHHHhhh-H-HHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHH Q lcl|Aclame:pro 1 MT----------DKLTLAVNHAL-N-DARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAV 68 (449) Q Consensus 1 ~~----------~~~~~~v~~~~-~-~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iV 68 (449) |+ +.|.-.+++-. . ..+... ...+.. |.. +-.... .......-...--...+++.|| T Consensus 31 ~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~-l~~YY~---g~~---~i~~~~----~~~~~~~~~~~ki~~n~~k~Iv 99 (512) T protein:vir:97 31 YDGTESDLLQNINEVSKYIEHHMDYQRPRLKV-LSDYYE---GKT---KNLVEL----TRRKEEYMADNRVAHDYASYIS 99 (512) T ss_pred cCchhhhhhhhHHHHHHHHHHHHHhhHHHHHH-HHHHhc---ccC---cccccc----CcccccccCcceeecchHHHHH Confidence 22 11221222111 0 011111 111211 110 000000 0000000000112357899999 Q ss_pred hhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccC Q lcl|Aclame:pro 69 EKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGR 146 (449) Q Consensus 69 d~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~ 146 (449) +..+.=++-+++++..+++... +.++++... ++..+..++.+....||.|++++..+. |......+++.. T Consensus 100 d~~~~yl~g~p~~~~~~d~~~~--------~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~ded~~~~i~~~~p~~ 171 (512) T protein:vir:97 100 DFINGYFLGNPIQCQDDDKDVL--------EAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMS 171 (512) T ss_pred HHHhhhhcccCceeccCChHHH--------HHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccc Confidence 9999999999999865443221 123333322 566777788888899999999998853 322222222211 Q ss_pred -----------c-eeeEEEeccccCChhhhhcc-ccccccCCc-eeEEeeecccCC-Cccc----eEEccce---eeecc Q lcl|Aclame:pro 147 -----------G-LQKVSVSWAGSLKVAEWDTG-INSKTYGQP-KLWKYTERLPNG-SSRR----VDIHPDR---VFILG 204 (449) Q Consensus 147 -----------~-l~~i~v~~~~~i~~~~~~~D-p~s~~yg~P-~~y~i~~~~~~~-~~~~----~~IH~SR---li~~~ 204 (449) . +..++. |.....-. ...+ .....++.+ ..|++.....++ .... ..-|+-- |+.|. T Consensus 172 ~~~iyd~~~~~~~~~~vr~-~~~~~~~~-~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~ 249 (512) T protein:vir:97 172 TFVIYDNTIERNSIAGVRY-LRTKPIDK-TDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFS 249 (512) T ss_pred eEEEEcCCCCCceEEEEEE-EEeeeccc-cccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcccceEeec Confidence 1 111111 11100000 0000 000111111 112222111110 0001 1123333 23333 Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHH-HH-HHHhccc Q lcl|Aclame:pro 205 DYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNE-VA-GEINRGN 282 (449) Q Consensus 205 ~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 282 (449) + ...|.|.++.+..-+..++.+....+..+...+...+.+. +. ......+....... ++ ....... T Consensus 250 n-n~~~~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~--------G~---~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (512) T protein:vir:97 250 N-NERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIK--------GN---LNLDPVEVRKQKEANVLFLEPTVYE 317 (512) T ss_pred C-CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeee--------cC---ccCCchhhhhhhhcccccccccchh Confidence 2 2457888888888888888776655554433222222211 10 00001111111100 00 0000011 Q ss_pred cce-ee--cCCCc--eEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH----HHHHHHHHHHhh Q lcl|Aclame:pro 283 DVL-MT--TQGAT--VTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY----FNARCQSRRVDL 353 (449) Q Consensus 283 ~~~-l~--~~~ed--~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n----yyd~I~~~Qe~~ 353 (449) +.. .+ +.+-+ |-..+.+.++....++.+.+.|...+++|-.- ++.. +|+.|+.-++. -...++.+|..+ T Consensus 318 ~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~-~~~~-~gn~Sg~Al~~~~~~l~~ka~~k~~~f 395 (512) T protein:vir:97 318 NRDTGIETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMK-DDNF-SGTQSGEAMKYKLFGLEQRTKTKEGLF 395 (512) T ss_pred hcccccCCCCCcceEEEeecCCHHHHHHHHHHHHHHHHHHhCCcccC-cccc-cccchHHHHHHHHHHHHHHHHHHHHHH Confidence 111 11 12223 45556677899999999999999999999743 3322 23333323332 233344444444 Q ss_pred hHHHHHHHHHHHHH-h-cC--CCC---CCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccC-H-HHHHH--- Q lcl|Aclame:pro 354 SFEIEDFCDKLIEL-K-II--DAV---AKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFS-R-EEIRT--- 421 (449) Q Consensus 354 ~~p~~~~l~~l~~~-~-~~--~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~-~-~e~r~--- 421 (449) ...+.+++..++.. + .+ ..+ .++++.|+|-...+..+.|++..+.+..++.-......+.++ + +|+.. T Consensus 396 ~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~p~~~~e~~~~~~kl~giiS~et~~~~l~~v~d~~~E~eri~~ 475 (512) T protein:vir:97 396 TKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDPELEVKKIEE 475 (512) T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccccceEEeCCCCCcCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHH Confidence 44454444333222 1 11 112 268999999999999999998877654433321111223332 2 33321 Q ss_pred H----h-------cCCCCCCCCCCCCCcchhhccccc Q lcl|Aclame:pro 422 A----A-------GYDNDDEEPLGEEDGDEEDKATDS 447 (449) Q Consensus 422 ~----~-------~~~~~~~~~~~~~~~~ee~~~~~~ 447 (449) + . +.++...+...++++.++....+- T Consensus 476 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (512) T protein:vir:97 476 DEKESIKKAQKGIYKDPRDINDDEQDDDTKDTVDKKE 512 (512) T ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCCccccccccC Confidence 1 0 001111000000011111111111 No 144 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=98.79 E-value=3.7e-08 Score=61.35 Aligned_cols=402 Identities=10% Similarity=0.005 Sum_probs=165.1 Q ss_pred CchhhHHH-HHhhh-----HHHHHHHHHHHHHHHHhhcCcccccchhccCCcccC----CHHHHHHHHHcCchhHHHHhh Q lcl|Aclame:pro 1 MTDKLTLA-VNHAL-----NDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELV----TYENLYSLYRRGGIAHGAVEK 70 (449) Q Consensus 1 ~~~~~~~~-v~~~~-----~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~----~~~~l~~~Y~~~~l~r~iVd~ 70 (449) |.=++..- ++... +..+.... ..+..+.-..- .+.+.....+..... ...-..+..-...+++.||+. T Consensus 1 ~~~e~~~~~i~~~~~~~~~~~~~~~~~-~~Yy~g~hdi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~ 78 (471) T protein:vir:10 1 MEIEVIKKIISSQMVKHGKFVSQAAEA-EKYYRNENDIK-RKRKPADKKGAENEAKAEDNAFRNADNRISHNWHQLLLDQ 78 (471) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccccccc-cccchhhhhcccccccccccccccccceeccchhHHHHHh Confidence 33222111 11111 11111111 11111100000 000110000000000 000001112346799999999 Q ss_pred hHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec--CCCcccccccccCc- Q lcl|Aclame:pro 71 LVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR--DEKDWNLPATKGRG- 147 (449) Q Consensus 71 pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~--d~~~~~~Pl~~~~~- 147 (449) .+.=++-+++++...++. ..+.++.++..++..+..++.+.+..||.|++++.++ +|...-..+++... T Consensus 79 ~~~yl~G~p~~~~~~~~~--------~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~g~~~~~~~~p~~~~ 150 (471) T protein:vir:10 79 KKAYALTYPPTFDVDDKK--------VNDMIVDVLGDDYERISKQLCVNAGNAGIAWLHVWKDASDNSFRYACVDSKEVI 150 (471) T ss_pred hhhhhcccCceeccCChH--------HHHHHHHHHhcCHHHHHHHHHHHHhhCCeEEEEEEeeCCCCeeEEEEEcccceE Confidence 999999999987544321 1122333334456667778888889999999999885 23322222222111 Q ss_pred -----------eeeEEEeccccCChhhhhcccccc-ccCCceeEEeeeccc-------------------CCC-ccceEE Q lcl|Aclame:pro 148 -----------LQKVSVSWAGSLKVAEWDTGINSK-TYGQPKLWKYTERLP-------------------NGS-SRRVDI 195 (449) Q Consensus 148 -----------l~~i~v~~~~~i~~~~~~~Dp~s~-~yg~P~~y~i~~~~~-------------------~~~-~~~~~I 195 (449) +..++.+........ ....-. -|..=..|.+..... +.. .....- T Consensus 151 ~i~d~~~~~~~~~~ir~~~~~~~~~~---~~~~~~~vy~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (471) T protein:vir:10 151 PIYSKSLDKKSIGVLRVYSSIDETDG---KNYTVYEYWNDKECSFYRHEKEKPLEELETFQAISLIDTMNGDRSSDNSFK 227 (471) T ss_pred EEEcCCCCCceEEEEEEEEeeccCCC---ceeEEEEEEeCCcEEEEEecCCccccccccccccccccccccccccccccc Confidence 111221110000000 000000 000000111100000 000 000011 Q ss_pred ccc-e--eeeccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHH Q lcl|Aclame:pro 196 HPD-R--VFILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFN 272 (449) Q Consensus 196 H~S-R--li~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 272 (449) |.= + ++.|.+ ...|.|.++.+-.-+..++......+..+-..+...+.++ + ..+...++... T Consensus 228 ~~~g~iPvv~~~n-~~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~--------g---~~~~~~~~~~~--- 292 (471) T protein:vir:10 228 HDFGLVPFIPFKN-NEIETNDLKPIKDLVDVYDKVFSGFVNDTDDVQEVIFVLT--------N---YGGQDKQEFLE--- 292 (471) T ss_pred CCCCceeEEEecc-CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCceeeee--------c---CCccccchhHH--- Confidence 221 1 122222 3457788888777777777665555544422222222111 1 01111111111 Q ss_pred HHHHHHhccccceeec-----CCC--ceEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHH-HH Q lcl|Aclame:pro 273 EVAGEINRGNDVLMTT-----QGA--TVTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKY-FN 343 (449) Q Consensus 273 ~~~~~~~~~~~~~l~~-----~~e--d~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~n-yy 343 (449) .+... ....+. .+- +|-+.+.+..++...++.+.+.|...++.|-.-.- ..| |++| -++. |. T Consensus 293 ----~~~~~-~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~tp~~~~~---~~g-n~Sg~Alk~~~~ 363 (471) T protein:vir:10 293 ----DLKRY-KMIKMDNDGMGDQSGVTTIAIDIPTEARNLILERTKKQIFISGQGVNPETD---KLG-NSSGVALKFLYS 363 (471) T ss_pred ----HhhcC-CeEEecCCCCccCccceEEeecCChHHHHHHHHHHHHHHHHHhCCcCCCcc---ccc-CccHHHHHHHHH Confidence 11111 111111 112 35555667789999999999999999999964222 223 3444 3433 22 Q ss_pred H---HHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHH--HHHcCCcccc-CH- Q lcl|Aclame:pro 344 A---RCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQT--MLGSGDNPAF-SR- 416 (449) Q Consensus 344 d---~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~--~~~~g~~~~~-~~- 416 (449) . .+..+|..+.+.+.+++..+..........++.+.|++....+++|.|++..+.+..++. +++. .+-+ ++ T Consensus 364 ~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl~g~iS~et~~~~--~p~v~D~~ 441 (471) T protein:vir:10 364 LLELKAGNMETQFRSGYATLVKMILKHLGLSDKLKIKQTWTRNSINNDTEMAQVVSTLATITSRENVAKS--NPIVEDWQ 441 (471) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeEEEeCCCCCCCHHHHHHHHHHHhccCchHHHHHh--CCCCCCHH Confidence 2 344444445555555554333322222345799999999999999999988776543321 2221 1222 22 Q ss_pred HHHHHH---h--cCCCCCCCCCCCCCcchhhcccc Q lcl|Aclame:pro 417 EEIRTA---A--GYDNDDEEPLGEEDGDEEDKATD 446 (449) Q Consensus 417 ~e~r~~---~--~~~~~~~~~~~~~~~~ee~~~~~ 446 (449) +|+... . ..+... +..+-+++.+.| T Consensus 442 ~E~eri~~E~~~~~~~~~-----~~~~~~~~~e~~ 471 (471) T protein:vir:10 442 DELRLQKAEQEGRSEKLY-----DMEEVEHESEVE 471 (471) T ss_pred HHHHHHHHHHHHHHhccc-----ccCCCCCccccC Confidence 233211 1 011111 111111111122 No 145 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=98.79 E-value=4.8e-08 Score=60.70 Aligned_cols=399 Identities=8% Similarity=0.022 Sum_probs=166.5 Q ss_pred CchhhH------------HHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHH Q lcl|Aclame:pro 1 MTDKLT------------LAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAV 68 (449) Q Consensus 1 ~~~~~~------------~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iV 68 (449) +.+.++ +.-.|..+-.+..+.. .+..+.--+-..+++... ....+....+..-..++++.|| T Consensus 16 ~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~-~yY~g~~~i~~~~~~~~~-----~~~~~~~~~~~ki~~n~~~~iv 89 (478) T protein:vir:10 16 VVEQIKPKYETQEEMILRLVREHKENIDNITMGE-RYYNHHPDILDAPPKRDV-----NGDYDETKPDWRMYTNYHQNLV 89 (478) T ss_pred HHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCchhcccccccc-----ccccccccccceeccchHHHHH Confidence 111111 0001111111111101 111110000000000000 0000000111122457999999 Q ss_pred hhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-CCccc---ccccc Q lcl|Aclame:pro 69 EKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWN---LPATK 144 (449) Q Consensus 69 d~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~---~Pl~~ 144 (449) +..+.=++.+++++..+++.. . ..+.+++..++..++.++.+.+..||.|++++..+. |...- .|... T Consensus 90 d~~~~~l~g~~~~~~~~~d~~----~----~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~~~~d~~g~~~~~~~~p~~~ 161 (478) T protein:vir:10 90 DQKVAYAVANPVTFGVDNDKA----L----KQIQHTLNHKWDDKLVDILTAASNKGIEWVQPYVDEEGEFKTFRVPAEQA 161 (478) T ss_pred HHHHhhhccCCeeeecCChHH----H----HHHHHHHhcCHHHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcccce Confidence 999999999999975543321 1 123333444667778888888899999999988853 22111 12210 Q ss_pred ------c--CceeeEEEeccccCChhhhhcccccccc---CCceeEEeeeccc--------CCCc----cceEEccce-- Q lcl|Aclame:pro 145 ------G--RGLQKVSVSWAGSLKVAEWDTGINSKTY---GQPKLWKYTERLP--------NGSS----RRVDIHPDR-- 199 (449) Q Consensus 145 ------~--~~l~~i~v~~~~~i~~~~~~~Dp~s~~y---g~P~~y~i~~~~~--------~~~~----~~~~IH~SR-- 199 (449) . +.+..+..+|.. .... .-.+ .+-.+|....... .+.. .+...|.-- T Consensus 162 ~~i~d~~~~~~~~~~v~~~~~--~~~~------~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 233 (478) T protein:vir:10 162 VPIWTNKERDELQAFIRVYEL--DGAE------RVEYWTKDDVTYYELKEGQLIPDFYRSDDHIQPHYYQGNKLMSWGRV 233 (478) T ss_pred EEEEcCCCCCceEEEEEEEEe--cCce------EEEEEeCCeEEEEEEcCCeeeccccccccccccceecccccccCCcc Confidence 0 011111111110 0000 0000 1111221110000 0000 011122221 Q ss_pred -eeeccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 -VFILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEI 278 (449) Q Consensus 200 -li~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 278 (449) ++.|.+ ...|.|.++.+..-+..++.+....+..+-..+...+.+. ++ ......+... .+ T Consensus 234 Pvv~~~n-~~~g~sd~~~v~~liDa~~~~~S~~~~~~~~~~~p~~~~~--------g~---~~~~~~~~~~-------~~ 294 (478) T protein:vir:10 234 PFIPFKN-NPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILK--------GY---EGEDMKDFMH-------NL 294 (478) T ss_pred ceEEecc-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCceeeee--------cC---Cccccchhhh-------hh Confidence 223322 3468888888877777777766665554432222222111 11 0110011111 11 Q ss_pred hccccceeec--CCCc--eEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh-HHH-HHH---HHHHH Q lcl|Aclame:pro 279 NRGNDVLMTT--QGAT--VTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-QKY-FNA---RCQSR 349 (449) Q Consensus 279 ~~~~~~~l~~--~~ed--~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD-~~n-yyd---~I~~~ 349 (449) .. ...+.+. ++.+ |-+.+.+..++...++.+.+.|...+++|-.- ++. -|| |.++. ++. |.. .++.+ T Consensus 295 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~-~~~-~~~-n~Sg~Al~~~~~~l~~k~~~~ 370 (478) T protein:vir:10 295 KY-YKAISVAGESGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQ-QDK-FGN-SPSGIALKFMYSNLDLKANKL 370 (478) T ss_pred hh-cceEEecCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCccccC-ccc-ccc-ccHHHHHHHHHHHHHHHHHHH Confidence 11 1122222 2234 44556678899999999999999999999532 111 123 34443 332 322 23333 Q ss_pred HHhhhHHHHHHHHHHHHHhcCC-CCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHH--HHHcCCcccc-CH-HHHH---H Q lcl|Aclame:pro 350 RVDLSFEIEDFCDKLIELKIID-AVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQT--MLGSGDNPAF-SR-EEIR---T 421 (449) Q Consensus 350 Qe~~~~p~~~~l~~l~~~~~~~-~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~--~~~~g~~~~~-~~-~e~r---~ 421 (449) |..+...+.+++..++...... ...++.++|+|-...++++.|++..+.+...+. ++.. .+-+ ++ .|+. + T Consensus 371 ~~~~~~~l~~~~~li~~~~g~~~~~~~i~i~f~~~~p~d~~e~a~~~~kl~g~iS~et~~~~--l~~v~D~~~E~~ri~~ 448 (478) T protein:vir:10 371 KNKTLTALQELLQYIIDFYRLDVKVQDIEITFNFNVMVNELENSQIAMNSTGLLSKETILSN--HAWVEDPVAEMERIEQ 448 (478) T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccceEEecCCCCCCHHHHHHHHHHHhCCCChHHHHHh--CCCCCCHHHHHHHHHH Confidence 3334444444444333332222 234789999999999999999987776543321 2221 1112 22 2222 1 Q ss_pred Hh-c----CCCCCCCCCCCCCcchhhcccc Q lcl|Aclame:pro 422 AA-G----YDNDDEEPLGEEDGDEEDKATD 446 (449) Q Consensus 422 ~~-~----~~~~~~~~~~~~~~~ee~~~~~ 446 (449) +- . .........++++.+++....| T Consensus 449 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (478) T protein:vir:10 449 ENIELNQQLPDIEEGLNGEQQRQSENNQPE 478 (478) T ss_pred HHHHHHhhccccccccCCCCCCCCCCCCCC Confidence 10 0 1111112222222222222222 No 146 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=98.78 E-value=3.2e-08 Score=61.71 Aligned_cols=407 Identities=13% Similarity=0.073 Sum_probs=179.3 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcc-cccchhccCCcccCCHHHHHHHH--------------------- Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNK-RHSAWCEYGFPELVTYENLYSLY--------------------- 58 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~-r~~~~~~~~~~~~~~~~~l~~~Y--------------------- 58 (449) |++||+--.+-... .. . +..+.+......-. .+..+.. ......+| T Consensus 3 ~~~~~k~~~~~~~~--~~-~-~~~~~~~~~~~~i~~~~~~~~~--------i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~ 70 (500) T protein:vir:30 3 VIQKIKNLVTRSKY--VM-T-TQSLTNITDHPKIAISKLEYDR--------ITTNLKYYKSDWDSVLYLNTDGETKKRDL 70 (500) T ss_pred hHHHHHHHHHHHHH--Hh-h-cchhhhhhccccccCCHHHHHH--------HHHHHHHhcCCCCCcccccCCCCcccCce Confidence 88888744331110 00 0 01111111000000 0000000 01111222 Q ss_pred HcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEecCCCc Q lcl|Aclame:pro 59 RRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIRDEKD 137 (449) Q Consensus 59 ~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~ 137 (449) .+-.+++.||+..|+=++-+.++|..+++. .. +.+++++.. +++..+.+++..+-..|++++-+.++.+.. T Consensus 71 ~slnl~~~i~~~~A~lv~~e~~~i~~~d~~----~~----~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~ 142 (500) T protein:vir:30 71 NHLPIARTAAKKIASLVFNEQAEIKVDDDA----AN----EFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDGDKV 142 (500) T ss_pred eecchHHHHHHHHhhhhcCCcceEecCChH----HH----HHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeCCce Confidence 234899999999999999999988665432 12 234444333 577778888888888888988888854331 Q ss_pred -c-------ccccccc-CceeeEEEecccc--CChh-hhhccccccccCCc-eeEEeeecc-----c--CCCc------- Q lcl|Aclame:pro 138 -W-------NLPATKG-RGLQKVSVSWAGS--LKVA-EWDTGINSKTYGQP-KLWKYTERL-----P--NGSS------- 190 (449) Q Consensus 138 -~-------~~Pl~~~-~~l~~i~v~~~~~--i~~~-~~~~Dp~s~~yg~P-~~y~i~~~~-----~--~~~~------- 190 (449) + --|+..+ .++....++.... ..-. .+.+- ..-+...+ +.|+|.... . -|.. T Consensus 143 ~I~~v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~-lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~ 221 (500) T protein:vir:30 143 RVAFVQAPVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTL-IEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVY 221 (500) T ss_pred EEEEEcCCeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEE-EEEEEEeCCceeEEEEEEEecccccccCccccccccc Confidence 1 1143222 2332222221110 0000 00000 00000000 012222111 0 0000 Q ss_pred ----cceEE-cccee--eecc--------CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHH Q lcl|Aclame:pro 191 ----RRVDI-HPDRV--FILG--------DYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTN 255 (449) Q Consensus 191 ----~~~~I-H~SRl--i~~~--------~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~ 255 (449) ....+ +-.|. ..|. .....|+|++..+.+.+..++.+......-+- ..-..+ -+ -.+ T Consensus 222 ~~l~~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~-~g~~~i--~v-----~~~ 293 (500) T protein:vir:30 222 KDLKDEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVK-MGQRRV--AV-----PES 293 (500) T ss_pred CCcCcceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHH-hCccee--ee-----chH Confidence 00111 11221 1121 12345999999999999988888766554331 111111 01 111 Q ss_pred HHhhhccCh-HH-HH-HHHHHHHHHHhccccceeecCCCceEEeeccc--CChHHHHHHHHHHHHhhhcCCceeeeccCc Q lcl|Aclame:pro 256 LASLYGVSI-DE-LQ-DKFNEVAGEINRGNDVLMTTQGATVTPLVTSV--ADPTATYNVNLQTAAAGVDIPTRILIGNQQ 330 (449) Q Consensus 256 l~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~l--sgl~d~~~~~~~~iaaas~IP~t~L~Gqs~ 330 (449) +......+. .+ .. ..+. .-.......++ ..+.+.-++.++..+ ......++.+.+.++..+|++-.. ||-.. T Consensus 294 ~l~~~~~~~~g~~~~~~~~d-~~~~~~~~~~~-~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~-~~~~~ 370 (500) T protein:vir:30 294 LTALTVRTTDGDVVPRPRFE-SDQNVYIRMGG-RDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGL-FSFDG 370 (500) T ss_pred HhcccCCCCCccccCCcccC-CCcceEEEcCC-CCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccc-cccCc Confidence 111000000 00 00 0010 00000001110 011223477766654 357778888899999999998644 44333 Q ss_pred ccc-ccch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----c--CC--CCCCceEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 331 AER-SSTE---DQKYFNARCQSRRVDLSFEIEDFCDKLIELK----I--ID--AVAKKAVIWDDLNEQTGTEKLTNAKTM 398 (449) Q Consensus 331 gg~-~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~----~--~~--~~~~~~~~f~pL~~~sekE~Aei~~~~ 398 (449) +|. ++++ ..+.-|.++..+|..+.+.+.+++..++..+ + +. ...+++|.|+.-...++.+.++... T Consensus 371 ~g~~TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~-- 448 (500) T protein:vir:30 371 KSMKTATEIVSENSDTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWI-- 448 (500) T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHH-- Confidence 333 4455 4566788899988877666666666554332 1 12 2346889999988888766554443 Q ss_pred HHHHHHHHHcCCcc---------ccCHHHHHHHhcCCCCCCCCCCCCCcchhhcccc Q lcl|Aclame:pro 399 GEINQTMLGSGDNP---------AFSREEIRTAAGYDNDDEEPLGEEDGDEEDKATD 446 (449) Q Consensus 399 A~a~~~~~~~g~~~---------~~~~~e~r~~~~~~~~~~~~~~~~~~~ee~~~~~ 446 (449) +++.+|.++ -.+.+|+++...--..+..+..++.+++.+...| T Consensus 449 -----~~v~aGi~s~~~~i~~~~g~~eeea~~~l~~i~~E~~~~~~~~~~~~~~~g~ 500 (500) T protein:vir:30 449 -----KVVNAGFGTREMAIQKVLNVTEEKAQEIAAEINTGIVDEINQQRTDTHLYGE 500 (500) T ss_pred -----HHHHcCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccccCCCCCccccccCC Confidence 334444221 2344444433211111111222223333333344 No 147 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=98.78 E-value=3.2e-08 Score=61.71 Aligned_cols=407 Identities=13% Similarity=0.073 Sum_probs=179.3 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcc-cccchhccCCcccCCHHHHHHHH--------------------- Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNK-RHSAWCEYGFPELVTYENLYSLY--------------------- 58 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~-r~~~~~~~~~~~~~~~~~l~~~Y--------------------- 58 (449) |++||+--.+-... .. . +..+.+......-. .+..+.. ......+| T Consensus 3 ~~~~~k~~~~~~~~--~~-~-~~~~~~~~~~~~i~~~~~~~~~--------i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~ 70 (500) T protein:vir:98 3 VIQKIKNLVTRSKY--VM-T-TQSLTNITDHPKIAISKLEYDR--------ITTNLKYYKSDWDSVLYLNTDGETKKRDL 70 (500) T ss_pred hHHHHHHHHHHHHH--Hh-h-cchhhhhhccccccCCHHHHHH--------HHHHHHHhcCCCCCcccccCCCCcccCce Confidence 88888744331110 00 0 01111111000000 0000000 01111222 Q ss_pred HcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEecCCCc Q lcl|Aclame:pro 59 RRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIRDEKD 137 (449) Q Consensus 59 ~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~ 137 (449) .+-.+++.||+..|+=++-+.++|..+++. .. +.+++++.. +++..+.+++..+-..|++++-+.++.+.. T Consensus 71 ~slnl~~~i~~~~A~lv~~e~~~i~~~d~~----~~----~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~ 142 (500) T protein:vir:98 71 NHLPIARTAAKKIASLVFNEQAEIKVDDDA----AN----EFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDGDKV 142 (500) T ss_pred eecchHHHHHHHHhhhhcCCcceEecCChH----HH----HHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeCCce Confidence 234899999999999999999988665432 12 234444333 577778888888888888988888854331 Q ss_pred -c-------ccccccc-CceeeEEEecccc--CChh-hhhccccccccCCc-eeEEeeecc-----c--CCCc------- Q lcl|Aclame:pro 138 -W-------NLPATKG-RGLQKVSVSWAGS--LKVA-EWDTGINSKTYGQP-KLWKYTERL-----P--NGSS------- 190 (449) Q Consensus 138 -~-------~~Pl~~~-~~l~~i~v~~~~~--i~~~-~~~~Dp~s~~yg~P-~~y~i~~~~-----~--~~~~------- 190 (449) + --|+..+ .++....++.... ..-. .+.+- ..-+...+ +.|+|.... . -|.. T Consensus 143 ~I~~v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~-lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~ 221 (500) T protein:vir:98 143 RVAFVQAPVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTL-IEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVY 221 (500) T ss_pred EEEEEcCCeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEE-EEEEEEeCCceeEEEEEEEecccccccCccccccccc Confidence 1 1143222 2332222221110 0000 00000 00000000 012222111 0 0000 Q ss_pred ----cceEE-cccee--eecc--------CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHH Q lcl|Aclame:pro 191 ----RRVDI-HPDRV--FILG--------DYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTN 255 (449) Q Consensus 191 ----~~~~I-H~SRl--i~~~--------~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~ 255 (449) ....+ +-.|. ..|. .....|+|++..+.+.+..++.+......-+- ..-..+ -+ -.+ T Consensus 222 ~~l~~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~-~g~~~i--~v-----~~~ 293 (500) T protein:vir:98 222 KDLKDEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVK-MGQRRV--AV-----PES 293 (500) T ss_pred CCcCcceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHH-hCccee--ee-----chH Confidence 00111 11221 1121 12345999999999999988888766554331 111111 01 111 Q ss_pred HHhhhccCh-HH-HH-HHHHHHHHHHhccccceeecCCCceEEeeccc--CChHHHHHHHHHHHHhhhcCCceeeeccCc Q lcl|Aclame:pro 256 LASLYGVSI-DE-LQ-DKFNEVAGEINRGNDVLMTTQGATVTPLVTSV--ADPTATYNVNLQTAAAGVDIPTRILIGNQQ 330 (449) Q Consensus 256 l~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~l--sgl~d~~~~~~~~iaaas~IP~t~L~Gqs~ 330 (449) +......+. .+ .. ..+. .-.......++ ..+.+.-++.++..+ ......++.+.+.++..+|++-.. ||-.. T Consensus 294 ~l~~~~~~~~g~~~~~~~~d-~~~~~~~~~~~-~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~-~~~~~ 370 (500) T protein:vir:98 294 LTALTVRTTDGDVVPRPRFE-SDQNVYIRMGG-RDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGL-FSFDG 370 (500) T ss_pred HhcccCCCCCccccCCcccC-CCcceEEEcCC-CCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccc-cccCc Confidence 111000000 00 00 0010 00000001110 011223477766654 357778888899999999998644 44333 Q ss_pred ccc-ccch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----c--CC--CCCCceEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 331 AER-SSTE---DQKYFNARCQSRRVDLSFEIEDFCDKLIELK----I--ID--AVAKKAVIWDDLNEQTGTEKLTNAKTM 398 (449) Q Consensus 331 gg~-~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~----~--~~--~~~~~~~~f~pL~~~sekE~Aei~~~~ 398 (449) +|. ++++ ..+.-|.++..+|..+.+.+.+++..++..+ + +. ...+++|.|+.-...++.+.++... T Consensus 371 ~g~~TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~-- 448 (500) T protein:vir:98 371 KSMKTATEIVSENSDTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWI-- 448 (500) T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHH-- Confidence 333 4455 4566788899988877666666666554332 1 12 2346889999988888766554443 Q ss_pred HHHHHHHHHcCCcc---------ccCHHHHHHHhcCCCCCCCCCCCCCcchhhcccc Q lcl|Aclame:pro 399 GEINQTMLGSGDNP---------AFSREEIRTAAGYDNDDEEPLGEEDGDEEDKATD 446 (449) Q Consensus 399 A~a~~~~~~~g~~~---------~~~~~e~r~~~~~~~~~~~~~~~~~~~ee~~~~~ 446 (449) +++.+|.++ -.+.+|+++...--..+..+..++.+++.+...| T Consensus 449 -----~~v~aGi~s~~~~i~~~~g~~eeea~~~l~~i~~E~~~~~~~~~~~~~~~g~ 500 (500) T protein:vir:98 449 -----KVVNAGFGTREMAIQKVLNVTEEKAQEIAAEINTGIVDEINQQRTDTHLYGE 500 (500) T ss_pred -----HHHHcCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccccCCCCCccccccCC Confidence 334444221 2344444433211111111222223333333344 No 148 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=98.77 E-value=5.8e-08 Score=60.27 Aligned_cols=402 Identities=11% Similarity=-0.023 Sum_probs=157.4 Q ss_pred CchhhHHHHHh----hhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHh Q lcl|Aclame:pro 1 MTDKLTLAVNH----ALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCW 76 (449) Q Consensus 1 ~~~~~~~~v~~----~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~ 76 (449) |+-.+.+.-.- .....+... ...+.. | ..+-.+ . +.. -+.++........++++|||..++-+. T Consensus 1 ~~t~~d~i~~L~~~~~~~~~r~~~-~~~Yy~---G---~~~i~~--~--~~~-~~~~~~~~~~~~n~~~~ivd~~~~~l~ 68 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLE-AEAYRN---G---TRRLKT--I--GIG-APPELAYLDVQPGWVATYLRTLSDRLD 68 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHh---c---cccchh--c--ccc-cchhhhhhhhhcchHHHHHHHHHhhhc Confidence 66554422221 111111111 111211 1 111000 0 111 112333333456788999999999887 Q ss_pred cCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-------CCcccccccccC--- Q lcl|Aclame:pro 77 QTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-------EKDWNLPATKGR--- 146 (449) Q Consensus 77 r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-------~~~~~~Pl~~~~--- 146 (449) =+|+.+. +++.. ...+...++ ..++..+..++.+.+-.||-|++++.-+. +...-.++++.. T Consensus 69 ~~g~~~~-~d~~~----~~~l~~i~~---~N~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~~i~~~~p~~~~~ 140 (480) T protein:vir:78 69 IEGFRIS-EDSEG----LEELWNWWQ---ANDLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIPLIRVESPLYMYA 140 (480) T ss_pred cCceecC-CCchh----HHHHHHHHH---hcCHHHHHHHHHHHHhhcCceEEEeecCccccCCCCCeeEEEEEcccceEE Confidence 7787642 22111 112222222 12455667778888889999988876421 111111111111 Q ss_pred ---------ceeeEEEeccccCChhhhhccccccccCCc-eeEEeeecccCCCcc----ceEE-cc-ce--eeeccCCC- Q lcl|Aclame:pro 147 ---------GLQKVSVSWAGSLKVAEWDTGINSKTYGQP-KLWKYTERLPNGSSR----RVDI-HP-DR--VFILGDYS- 207 (449) Q Consensus 147 ---------~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P-~~y~i~~~~~~~~~~----~~~I-H~-SR--li~~~~~~- 207 (449) -+..++.+ ...... ..+....++.| ..|++.... +.... .-.+ |. -+ |++|.++. T Consensus 141 i~D~~~~~~~~~~i~~~-~~~d~~----~~~~~~~~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~ 214 (480) T protein:vir:78 141 ELDPRNTRRVTRAVRLY-TTRDDV----AVPDRATLYLPDETVPLRRNG-GLNDQWVVDGDVIKHGLGVVPVVPLTNDPR 214 (480) T ss_pred EEcCCCccceEEEEEEE-EeecCC----cceEEEEEEeCCeEEEEEecC-CCcccccccccccccCCCCcceEEeecccc Confidence 11111111 000000 00111111112 112221110 10000 1111 21 12 24444432 Q ss_pred ---CCcchhHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc Q lcl|Aclame:pro 208 ---EDAIGFLEP-AYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND 283 (449) Q Consensus 208 ---~~G~s~l~~-~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (449) .+|+|.+++ +..-+..++++...........+..++.+. + .++..... +.....+. ...+ T Consensus 215 ~~~~~G~sdi~~~i~~l~Da~~~~~s~~~~~~~~~a~p~~~i~-----G-~~~~~~~~---~~~~~~~~-------~~~~ 278 (480) T protein:vir:78 215 LGNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVIS-----G-VTTDELTN---DGENTTLD-------IYYG 278 (480) T ss_pred cCCccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhh-----C-CCcccccc---ccccchhh-------hhhh Confidence 458887764 555455555554433222211111111110 0 00000000 00001111 1112 Q ss_pred ceeecCCCceEEeec---ccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh-HHH-H---HHHHHHHHHhhhH Q lcl|Aclame:pro 284 VLMTTQGATVTPLVT---SVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-QKY-F---NARCQSRRVDLSF 355 (449) Q Consensus 284 ~~l~~~~ed~~~~~~---~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD-~~n-y---yd~I~~~Qe~~~~ 355 (449) .++...+++.+..+. ++.+..+.+.....++++.+++|...| |..+. ++++++ ++. + -..++.+|..+.. T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~f-g~~~~-n~~Sg~Al~~~~~~l~~k~~~~~~~f~~ 356 (480) T protein:vir:78 279 RILTLASEAAKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYL-SSSSE-NPASAEAIIATDSRIVKMAERKGRIFGG 356 (480) T ss_pred hhccCCCCCceEEecCccCHHHHHHHHHHHHHHHhcccCCCHHHh-ccccC-chhHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 223333444443333 344566777888889999999997555 54332 334443 332 2 2333333334444 Q ss_pred HHHHHHHHHHHHhcCCCC---CCceEEeCCCCCCCHHHHHHHHHHHHHHHH------HHHHcCCccccCHH---HHH--- Q lcl|Aclame:pro 356 EIEDFCDKLIELKIIDAV---AKKAVIWDDLNEQTGTEKLTNAKTMGEINQ------TMLGSGDNPAFSRE---EIR--- 420 (449) Q Consensus 356 p~~~~l~~l~~~~~~~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a~~------~~~~~g~~~~~~~~---e~r--- 420 (449) .+.+++..++...-...+ .++.+.|+|-..+|..+.|+...+.+++.. .+.+. . -++++ |+. T Consensus 357 ~l~~~~rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~--l-g~~~d~~~e~~~~~ 433 (480) T protein:vir:78 357 AWERAMRIAMQIMGREVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARID--L-GYTATQREQMRDWD 433 (480) T ss_pred HHHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHHhcccCCCHHHHHhc--C-CCCHhHHHHHHHHH Confidence 455555444333222222 258999999999999998887766554431 11111 1 12332 221 Q ss_pred HHhc------C-CCCC----CCCCCCCCcchhhcccccCC Q lcl|Aclame:pro 421 TAAG------Y-DNDD----EEPLGEEDGDEEDKATDSAA 449 (449) Q Consensus 421 ~~~~------~-~~~~----~~~~~~~~~~ee~~~~~~~a 449 (449) ++.. + .+.. ..+.+...+.++......++ T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (480) T protein:vir:78 434 KQETEDMIDTLYSTTKAQADATPKPTVTETKTETQTSPSG 473 (480) T ss_pred HHHHHHHHHHhhccccCCCccccCCCCCCCCCccCCCccc Confidence 1110 0 0100 01111111111112222222 No 149 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=98.75 E-value=1e-08 Score=64.42 Aligned_cols=373 Identities=11% Similarity=0.024 Sum_probs=161.4 Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHH-cCchhHHHHhhhHHHHhcCCcEEecC Q lcl|Aclame:pro 7 LAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYR-RGGIAHGAVEKLVGKCWQTNPEIIEG 85 (449) Q Consensus 7 ~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~-~~~l~r~iVd~pa~d~~r~~~~i~~~ 85 (449) |++...-+. + +..+. .|. + .. ...+.. -+.++...|+ ..+++++|||.+++=+.=+||+. . T Consensus 1 l~~~~~r~~----~-~~~yY-----~g~-~-~~---~~~~~~-~p~~~~~~~~~v~nw~~~~Vds~a~rl~~~Gf~~--~ 62 (410) T protein:vir:95 1 MNLYQSRVN----L-RYKHY-----AMQ-H-YE---APTGIT-IPAHIRAKYQAVLGWAAKGVDSLADRLIFRAFAN--D 62 (410) T ss_pred CCcchhhHH----H-HHHHh-----cCC-C-Cc---cccchh-ccHHHHhHHHhhcchhHHHHHHhHhhhccccccC--C Confidence 222211110 0 11121 110 0 00 000111 1234554443 34677999999999777778752 1 Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCceeeEEEeccccCChh-h Q lcl|Aclame:pro 86 DDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRGLQKVSVSWAGSLKVA-E 163 (449) Q Consensus 86 ~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~-~ 163 (449) + .... ..++ .+++-.+..++.+-+.+||-|++++.-+ |+...-.+..+.......++..+. +... . T Consensus 63 d----~~l~----~i~~---~N~ld~~~~~~~~~al~~G~sf~~v~~~~d~~~~i~~~sP~~~~~i~Dp~~~~-~~~al~ 130 (410) T protein:vir:95 63 D----FNVT----EIFD---RNNPDIFFDSAILSALIGSCSFVYISKGEDDEVRLQVIESSNATGVIDPITGL-LVEGYA 130 (410) T ss_pred C----chHH----HHHh---hcChHHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEEeCCCCc-eEEEEE Confidence 1 1111 1121 1233344555566666888888777543 232221222222211111111110 0000 0 Q ss_pred -hhc----cccccccCCc-eeEEeeecccCCCccceEE-ccce---eeeccCC----CCCcchhH-HHHHHHHHHHHHHh Q lcl|Aclame:pro 164 -WDT----GINSKTYGQP-KLWKYTERLPNGSSRRVDI-HPDR---VFILGDY----SEDAIGFL-EPAYNAFVSLEKVE 228 (449) Q Consensus 164 -~~~----Dp~s~~yg~P-~~y~i~~~~~~~~~~~~~I-H~SR---li~~~~~----~~~G~s~l-~~~~~~l~~~~~~~ 228 (449) +.. .+....++.| +.|++.. ++. ...+ |+-- +++|.+. ..+|.|.+ +++...+..+.++. T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~g~vPvV~f~n~~~l~~~~G~s~I~~~v~~l~da~~r~~ 205 (410) T protein:vir:95 131 VLARDDYNRPTLEAYFEPNATHFIPK---DGE--PYSVTNETGIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRTL 205 (410) T ss_pred EEEecCCCeEEEEEEEeCCcEEEEee---CCc--cccccCCCCCcceEEecccccCCccCCccccchhHHHHHHHHHHHH Confidence 001 1112222222 2333321 111 1112 3322 2445433 23588865 66766565666653 Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCC-----ceEEe-ecccCC Q lcl|Aclame:pro 229 GGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGA-----TVTPL-VTSVAD 302 (449) Q Consensus 229 ~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e-----d~~~~-~~~lsg 302 (449) .-..-.. .-+........+ +...+ .....+...+.+ ...+.+++ ++.++ ++++.+ T Consensus 206 ~~~~~~~-----e~~a~pqr~i~G------~d~d~--~~~~~~~~~~~~------i~~~~~~~~~~~~~v~q~~~~~l~~ 266 (410) T protein:vir:95 206 ERADITA-----EFYSWPQKYILG------LDPDA--EPMEKWKATVSS------LLTISSSDKGVKPSVGQFTTASMSP 266 (410) T ss_pred HHHHHHH-----HHhcchhheeec------cCCCC--CcCchhhhhhhh------heeccCCCCCCcceEEecCCCChHH Confidence 3211110 001111000011 11111 111112111111 12222222 23333 335667 Q ss_pred hHHHHHHHHHHHHhhhcCCceeeeccCccccccchh-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCCCC- Q lcl|Aclame:pro 303 PTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-----QKYFNARCQSRRVDLSFEIEDFCDKLIELK--IIDAVA- 374 (449) Q Consensus 303 l~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD-----~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~--~~~~~~- 374 (449) .-+.+.....++|+.+++|..-|-|.+. +.++++ .......++.+|+.+...+.+.+...+... ....++ T Consensus 267 ~~~~l~~l~~~~a~~s~lP~~~lg~~~~--NpsSa~Al~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~i~~~~~~~~~~ 344 (410) T protein:vir:95 267 FTEQLRTAAAGFAGEMGLTLDDLGFVSD--NPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYVAACLRDEFRYTRSQ 344 (410) T ss_pred HHHHHHHHHHHHhhhcCCCHHHhccccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc Confidence 7888999999999999999876655542 334433 344556666676666565555444333222 222233 Q ss_pred --CceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCCCCCcchhhcccccCC Q lcl|Aclame:pro 375 --KKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGEEDGDEEDKATDSAA 449 (449) Q Consensus 375 --~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~~~~~~ee~~~~~~~a 449 (449) +..+.|.|+..++-... ...|+++.+++++|. ...+.+-+++..|+.+++. .+.+..+..| T Consensus 345 ~~~~~v~W~p~~d~~~~s~----a~~aDa~~Kl~~a~~-g~~~~~~~~~~lg~~~~~~---------~~~~~~e~~~ 407 (410) T protein:vir:95 345 FVRTAVKWEPLFEADANTM----TMIGDGVVKLNQALP-GYINAETIRDLTGIAGDMS---------AKPVVSEGGS 407 (410) T ss_pred cceeeEEeeecCCcchhhH----HHHHHHHHHHHHhcc-CCccHHHHHHhcCCChHHH---------HHHHHHHHHh Confidence 35788998876654433 335678888888752 2445566778777764421 1111112222 No 150 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=98.75 E-value=6.7e-08 Score=59.92 Aligned_cols=409 Identities=11% Similarity=0.016 Sum_probs=161.1 Q ss_pred CchhhHHH-HHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHH-HH-cCchhHHHHhhhHHHHhc Q lcl|Aclame:pro 1 MTDKLTLA-VNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSL-YR-RGGIAHGAVEKLVGKCWQ 77 (449) Q Consensus 1 ~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~-Y~-~~~l~r~iVd~pa~d~~r 77 (449) |....... ++...+.-.....|+...-- ......+.. ..+..... ++... .+ ...++++|||..++=+.- T Consensus 23 ~~~~~~~~l~~~l~~~~~~~~~rl~~l~~--YY~G~~~~~----~~~~~~~~-~~~~~~~~~v~n~~~~ivd~~a~~l~~ 95 (501) T protein:vir:25 23 MSREQLGALVADMWRLHISERQWLDRIYE--YTKGLRGRP----EVPEGASD-EVKELAKLSVKNVLSLVRDSFAQNLSV 95 (501) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCch----hccccCCh-hhhhhHhhhhcChHHHHHHHHHhhhcc Confidence 44332221 11111111111112221110 001011100 01111111 22221 22 346889999999998887 Q ss_pred CCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCce-eeEEEecc Q lcl|Aclame:pro 78 TNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGL-QKVSVSWA 156 (449) Q Consensus 78 ~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l-~~i~v~~~ 156 (449) +||++- ++.++.. +...++ ..++-....++.+-+..||-|++++..+++...-..+.+...+ .+-++..+ T Consensus 96 ~gf~~~--d~~~~~~----l~~i~~---~N~~d~~~~~~~~~a~i~G~ay~~v~~de~~~~i~~~sp~~~~~iy~D~~~~ 166 (501) T protein:vir:25 96 VGYRNA--LAKENDP----AWEMWQ---RNRMDARQAEVHRPALTYGASYVTVTPTDEGPVFRTRSPRQILAVYADPSVD 166 (501) T ss_pred cceecC--CccchHH----HHHHHH---hcChhHHHHHHHHHHhhcCceEEEEecCCCCCeEEEeccccEEEEEecCCCC Confidence 887642 2222221 111221 1123344555666667899888887765332211112211110 00000000 Q ss_pred ccC-Chhhh---hccccc---cccCCc-eeEEeeeccc------CCC---------ccceEE------ccce---eeecc Q lcl|Aclame:pro 157 GSL-KVAEW---DTGINS---KTYGQP-KLWKYTERLP------NGS---------SRRVDI------HPDR---VFILG 204 (449) Q Consensus 157 ~~i-~~~~~---~~Dp~s---~~yg~P-~~y~i~~~~~------~~~---------~~~~~I------H~SR---li~~~ 204 (449) ..+ ..-.+ ..+... ..++-| ..|.+..... .+. ..+-.. |.=- +++|. T Consensus 167 ~~~~~ai~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~f~ 246 (501) T protein:vir:25 167 AWPQYALETWVAQKDAKPHRRGVLYDDTYMYELDLGEVVLGDAGGGQATQQPVNVREVTDVIEHGATFEGKPVCPVVRFV 246 (501) T ss_pred cceeEEEEEEeeccccCcceeEEEecCeeEEEEecCceeeeeccccccccccccccccccccccccccCCccceeeEecc Confidence 000 00000 000000 111112 1222211000 000 000001 2111 34454 Q ss_pred CC---CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 205 DY---SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRG 281 (449) Q Consensus 205 ~~---~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (449) +. ..+|.|.++++..-+..++++.........-.+..++.+ .++.. ++. ..+ +.. T Consensus 247 N~~~~~~~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i-----------~G~~~---~~~-~~~-------~~~ 304 (501) T protein:vir:25 247 NGRDADDMIVGEVAPLILLQQAINSVNFDRLIVSRFGANPQRVI-----------SGWTG---SKA-EVL-------KAS 304 (501) T ss_pred CccccCccccchhhhhHHHHHHHHHHHHHHHHHHHhhccHHHHH-----------hCCCC---Ccc-chh-------hhc Confidence 43 246888888877666666665443221111111111111 11111 110 111 111 Q ss_pred ccceeecCCCc--eEEee-cccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh----HHHHHHHHHHHHHhhh Q lcl|Aclame:pro 282 NDVLMTTQGAT--VTPLV-TSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED----QKYFNARCQSRRVDLS 354 (449) Q Consensus 282 ~~~~l~~~~ed--~~~~~-~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD----~~nyyd~I~~~Qe~~~ 354 (449) .+.++...+++ +-+++ +++.+..+.+.....+||+.+++|..-|.|.+. +.|++= +...-..+..+|..+. T Consensus 305 ~~~i~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~--N~Sg~Al~~~~~~l~~ka~~k~~~f~ 382 (501) T protein:vir:25 305 ALRVWTFEDPEVKAQAFPPASVEPYNLILEEMLQHVAMVAQISPAQVTGKMI--NVSAEALAAAEANQQRKLAAKRESFG 382 (501) T ss_pred ccceeccCCCCceEEEecccChHHHHHHHHHHHHHHHhhcCCChhhhccccC--ChHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22233333333 33332 345667788999999999999999877765532 223332 3334455555555555 Q ss_pred HHHHHHHHHHHHHhcCCCC---CCceEEeCCCCCCCHHHHHHHHHHHHHH-HHHHHHcCCccccCHHHHHHH------hc Q lcl|Aclame:pro 355 FEIEDFCDKLIELKIIDAV---AKKAVIWDDLNEQTGTEKLTNAKTMGEI-NQTMLGSGDNPAFSREEIRTA------AG 424 (449) Q Consensus 355 ~p~~~~l~~l~~~~~~~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a-~~~~~~~g~~~~~~~~e~r~~------~~ 424 (449) +.+.+++..++....+..+ .++++.|.|....|.++.|+...|.+++ +..-.-....+-+++.++... .. T Consensus 383 ~~l~~~~rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~gis~et~~~~~~g~~~~~ie~~~~~~~e~~ 462 (501) T protein:vir:25 383 ESWEQLLRLAAEMDDDPDTAADSGAEVLWRDTEARSFGAVVDGITKLASAGIPIEHLLSMVPGMTQQTIQAIKDSLRGGE 462 (501) T ss_pred HHHHHHHHHHHHHhCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHcCCCCHHHHHHHHHHHHHHh Confidence 5555554433333322222 3688999999999999988887776554 211111112344555443211 11 Q ss_pred C-------CCCCCCCCCCCCcchh-h----cccccCC Q lcl|Aclame:pro 425 Y-------DNDDEEPLGEEDGDEE-D----KATDSAA 449 (449) Q Consensus 425 ~-------~~~~~~~~~~~~~~ee-~----~~~~~~a 449 (449) . .+.+..+..+.+.+++ + ......+ T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (501) T protein:vir:25 463 VKSLVDKLLSNEPAPVPPPPPQAAAQALNEGGVNGNG 499 (501) T ss_pred HHHHHHHhhccCcCCCCCCCCCCCccccccccCCCCC Confidence 0 0111111111111110 1 1111111 No 151 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=98.74 E-value=7.1e-08 Score=59.78 Aligned_cols=401 Identities=7% Similarity=0.025 Sum_probs=162.9 Q ss_pred CchhhHHH-----------------------HHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHH Q lcl|Aclame:pro 1 MTDKLTLA-----------------------VNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSL 57 (449) Q Consensus 1 ~~~~~~~~-----------------------v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~ 57 (449) |+++.++- ++...+.-..-..+.....- -..| ..+-...............-..- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~l~~-Yy~g-~~~i~~~~~~~~~~~~~~~~~~~ 78 (474) T protein:vir:95 1 MINIIRMPWDKPYGEEVVEQMKPKVETQEEMIIRLINNHKQKLKDINVGQK-YYDK-DNDINYQAYKQDLHGNIDYTKPD 78 (474) T ss_pred CcccccCCCCCCCCcchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cCccccccchhhhcccccccccc Confidence 44443311 00000000000001100000 0000 00000000000000000000000 Q ss_pred H-HcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CC Q lcl|Aclame:pro 58 Y-RRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DE 135 (449) Q Consensus 58 Y-~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~ 135 (449) . -...+++.||+..+.=++-+++++...++.. . ..++.++..++...+.++.+....||.|++++.++ +| T Consensus 79 ~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~~~~-~-------~~l~~~~~n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~ 150 (474) T protein:vir:95 79 WRITTNFHQNLVDQKVSYVAGKPVTYAHDDDKV-L-------DVIHQVLDTRWDNKLIDILTAASNKGIDWLQVYINEDG 150 (474) T ss_pred cccccchHHHHHHhhhhhhcccCceeccCChHH-H-------HHHHHHHhccHHHHHHHHHHHHhhCCeEEEEeeeCCCC Confidence 0 1357899999999999999999985543321 1 22233333456677778888888999999999885 33 Q ss_pred CcccccccccCc------------eeeEEEeccccCChhhhhccccccccCCc-eeEEeeeccc----------CCCccc Q lcl|Aclame:pro 136 KDWNLPATKGRG------------LQKVSVSWAGSLKVAEWDTGINSKTYGQP-KLWKYTERLP----------NGSSRR 192 (449) Q Consensus 136 ~~~~~Pl~~~~~------------l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P-~~y~i~~~~~----------~~~~~~ 192 (449) ......+++... +..++. |.. . +-.--.++-| ..|....... ...... T Consensus 151 ~~~i~~~~p~~~~~v~d~~~~~~~~a~ir~-~~~--~------~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 221 (474) T protein:vir:95 151 ELKLFRVPAEQAIPIWTDKEREQLNAFIRI-FTF--N------GETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTH 221 (474) T ss_pred ceEEEEEcccceEEEEcCCCCCceEEEEEE-Eee--c------CeeEEEEEeCCeEEEEEEcCCceeeccccccccccCc Confidence 221222222111 111111 110 0 0000000111 1111100000 000001 Q ss_pred eEEccce---eeeccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHH Q lcl|Aclame:pro 193 VDIHPDR---VFILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQD 269 (449) Q Consensus 193 ~~IH~SR---li~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 269 (449) ...|.-- ++.|.. ...|.|.++.+..-+..++.+....+..+...+...+.+. + +.+....+... T Consensus 222 ~~~~~~~~vPvv~~~n-n~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~--------g---~~~~~~~~~~~ 289 (474) T protein:vir:95 222 FSTGSWERVPFIAFKN-NPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYILR--------G---YEGEDLSEFME 289 (474) T ss_pred ccccCCCccceEEecC-CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhc--------C---CCcccccchhh Confidence 1123222 222222 2347788888877777777766655554432222222111 1 11111111111 Q ss_pred HHHHHHHHHhccccceeecCCCc--eEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHH-HH-- Q lcl|Aclame:pro 270 KFNEVAGEINRGNDVLMTTQGAT--VTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKY-FN-- 343 (449) Q Consensus 270 ~~~~~~~~~~~~~~~~l~~~~ed--~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~n-yy-- 343 (449) .+. ....+.++++.+ |-+.+.+.+++...++.+.+.|...+++|-.-. ..-|+ |.+| -++. |. T Consensus 290 -------~~~-~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~--~~~~~-n~Sg~Alk~~~~~l 358 (474) T protein:vir:95 290 -------GLK-YYKAINVSSDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQT--DKFGS-ATSGIALKFLYTNL 358 (474) T ss_pred -------hhh-ccceeeccCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCccc--ccccc-ccHHHHHHHHHHHH Confidence 111 112233444445 444566778999999999999999999995422 12233 3444 3433 22 Q ss_pred -HHHHHHHHhhhHHHHHHHHHHHHHh-cCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHH--HHHcCCcccc-CH-H Q lcl|Aclame:pro 344 -ARCQSRRVDLSFEIEDFCDKLIELK-IIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQT--MLGSGDNPAF-SR-E 417 (449) Q Consensus 344 -d~I~~~Qe~~~~p~~~~l~~l~~~~-~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~--~~~~g~~~~~-~~-~ 417 (449) ..+..++..+.+.+.+++..+.... ....+.++.+.|+|-...++.|.|++.++ +..++. +++. .+-+ ++ + T Consensus 359 ~~k~~~~~~~~~~~l~~~~~~i~~~~g~~~d~~~i~i~f~~~~p~~~~e~a~~~~~-~giiS~et~~~~--lp~v~D~~~ 435 (474) T protein:vir:95 359 NLKANKLKNKANVALQELMQFILDFNKIKLDAKEIEITFNFNVMVNDLEQSQIGAQ-SQYLSKETLVRH--HPWVDDPKA 435 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecCCCccCHHHHHHHHHH-cCCCChHHHHHh--CCCCCCHHH Confidence 2223333334444444444333322 21224578999999999999999987543 211111 1111 1112 22 2 Q ss_pred HHHH---H----h-cCCCC--CCCCCCCCCcchhhcccc Q lcl|Aclame:pro 418 EIRT---A----A-GYDND--DEEPLGEEDGDEEDKATD 446 (449) Q Consensus 418 e~r~---~----~-~~~~~--~~~~~~~~~~~ee~~~~~ 446 (449) |+.. + . .+... .......++++.+...++ T Consensus 436 E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 474 (474) T protein:vir:95 436 ELERLDEEQLELNKQLPNLDDGGADGAQQQQQSENNQSK 474 (474) T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCcCCCCccccC Confidence 3321 1 0 11111 111111111111111111 No 152 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=98.74 E-value=7.1e-08 Score=59.78 Aligned_cols=401 Identities=7% Similarity=0.025 Sum_probs=162.9 Q ss_pred CchhhHHH-----------------------HHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHH Q lcl|Aclame:pro 1 MTDKLTLA-----------------------VNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSL 57 (449) Q Consensus 1 ~~~~~~~~-----------------------v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~ 57 (449) |+++.++- ++...+.-..-..+.....- -..| ..+-...............-..- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~l~~-Yy~g-~~~i~~~~~~~~~~~~~~~~~~~ 78 (474) T protein:vir:96 1 MINIIRMPWDKPYGEEVVEQMKPKVETQEEMIIRLINNHKQKLKDINVGQK-YYDK-DNDINYQAYKQDLHGNIDYTKPD 78 (474) T ss_pred CcccccCCCCCCCCcchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cCccccccchhhhcccccccccc Confidence 44443311 00000000000001100000 0000 00000000000000000000000 Q ss_pred H-HcCchhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CC Q lcl|Aclame:pro 58 Y-RRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DE 135 (449) Q Consensus 58 Y-~~~~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~ 135 (449) . -...+++.||+..+.=++-+++++...++.. . ..++.++..++...+.++.+....||.|++++.++ +| T Consensus 79 ~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~~~~-~-------~~l~~~~~n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~ 150 (474) T protein:vir:96 79 WRITTNFHQNLVDQKVSYVAGKPVTYAHDDDKV-L-------DVIHQVLDTRWDNKLIDILTAASNKGIDWLQVYINEDG 150 (474) T ss_pred cccccchHHHHHHhhhhhhcccCceeccCChHH-H-------HHHHHHHhccHHHHHHHHHHHHhhCCeEEEEeeeCCCC Confidence 0 1357899999999999999999985543321 1 22233333456677778888888999999999885 33 Q ss_pred CcccccccccCc------------eeeEEEeccccCChhhhhccccccccCCc-eeEEeeeccc----------CCCccc Q lcl|Aclame:pro 136 KDWNLPATKGRG------------LQKVSVSWAGSLKVAEWDTGINSKTYGQP-KLWKYTERLP----------NGSSRR 192 (449) Q Consensus 136 ~~~~~Pl~~~~~------------l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P-~~y~i~~~~~----------~~~~~~ 192 (449) ......+++... +..++. |.. . +-.--.++-| ..|....... ...... T Consensus 151 ~~~i~~~~p~~~~~v~d~~~~~~~~a~ir~-~~~--~------~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 221 (474) T protein:vir:96 151 ELKLFRVPAEQAIPIWTDKEREQLNAFIRI-FTF--N------GETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTH 221 (474) T ss_pred ceEEEEEcccceEEEEcCCCCCceEEEEEE-Eee--c------CeeEEEEEeCCeEEEEEEcCCceeeccccccccccCc Confidence 221222222111 111111 110 0 0000000111 1111100000 000001 Q ss_pred eEEccce---eeeccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHH Q lcl|Aclame:pro 193 VDIHPDR---VFILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQD 269 (449) Q Consensus 193 ~~IH~SR---li~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 269 (449) ...|.-- ++.|.. ...|.|.++.+..-+..++.+....+..+...+...+.+. + +.+....+... T Consensus 222 ~~~~~~~~vPvv~~~n-n~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~--------g---~~~~~~~~~~~ 289 (474) T protein:vir:96 222 FSTGSWERVPFIAFKN-NPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYILR--------G---YEGEDLSEFME 289 (474) T ss_pred ccccCCCccceEEecC-CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhc--------C---CCcccccchhh Confidence 1123222 222222 2347788888877777777766655554432222222111 1 11111111111 Q ss_pred HHHHHHHHHhccccceeecCCCc--eEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHH-HH-- Q lcl|Aclame:pro 270 KFNEVAGEINRGNDVLMTTQGAT--VTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKY-FN-- 343 (449) Q Consensus 270 ~~~~~~~~~~~~~~~~l~~~~ed--~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~n-yy-- 343 (449) .+. ....+.++++.+ |-+.+.+.+++...++.+.+.|...+++|-.-. ..-|+ |.+| -++. |. T Consensus 290 -------~~~-~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~--~~~~~-n~Sg~Alk~~~~~l 358 (474) T protein:vir:96 290 -------GLK-YYKAINVSSDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQT--DKFGS-ATSGIALKFLYTNL 358 (474) T ss_pred -------hhh-ccceeeccCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCccc--ccccc-ccHHHHHHHHHHHH Confidence 111 112233444445 444566778999999999999999999995422 12233 3444 3433 22 Q ss_pred -HHHHHHHHhhhHHHHHHHHHHHHHh-cCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHH--HHHcCCcccc-CH-H Q lcl|Aclame:pro 344 -ARCQSRRVDLSFEIEDFCDKLIELK-IIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQT--MLGSGDNPAF-SR-E 417 (449) Q Consensus 344 -d~I~~~Qe~~~~p~~~~l~~l~~~~-~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~--~~~~g~~~~~-~~-~ 417 (449) ..+..++..+.+.+.+++..+.... ....+.++.+.|+|-...++.|.|++.++ +..++. +++. .+-+ ++ + T Consensus 359 ~~k~~~~~~~~~~~l~~~~~~i~~~~g~~~d~~~i~i~f~~~~p~~~~e~a~~~~~-~giiS~et~~~~--lp~v~D~~~ 435 (474) T protein:vir:96 359 NLKANKLKNKANVALQELMQFILDFNKIKLDAKEIEITFNFNVMVNDLEQSQIGAQ-SQYLSKETLVRH--HPWVDDPKA 435 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecCCCccCHHHHHHHHHH-cCCCChHHHHHh--CCCCCCHHH Confidence 2223333334444444444333322 21224578999999999999999987543 211111 1111 1112 22 2 Q ss_pred HHHH---H----h-cCCCC--CCCCCCCCCcchhhcccc Q lcl|Aclame:pro 418 EIRT---A----A-GYDND--DEEPLGEEDGDEEDKATD 446 (449) Q Consensus 418 e~r~---~----~-~~~~~--~~~~~~~~~~~ee~~~~~ 446 (449) |+.. + . .+... .......++++.+...++ T Consensus 436 E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 474 (474) T protein:vir:96 436 ELERLDEEQLELNKQLPNLDDGGADGAQQQQQSENNQSK 474 (474) T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCcCCCCccccC Confidence 3321 1 0 11111 111111111111111111 No 153 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=98.73 E-value=7.6e-08 Score=59.60 Aligned_cols=406 Identities=11% Similarity=0.071 Sum_probs=178.5 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccc------------hhccC--CcccC-----CHHHHHHHHHcC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSA------------WCEYG--FPELV-----TYENLYSLYRRG 61 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~------------~~~~~--~~~~~-----~~~~l~~~Y~~~ 61 (449) |++|++-.++--.+ ++++... .+--+.+.+. |..++ -++.+ ....-...+.+- T Consensus 3 ~~~~~k~~~~~~~~-------~~~~~~~-~~~~~~~~~i~~~~~~~~ri~~~~~~y~g~~~~~~~~~~~~~~~~~~~~sl 74 (508) T protein:vir:15 3 LIQRIKDLFWKGAA-------ATGVTGS-LSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTI 74 (508) T ss_pred hHHHHHHHHHHHHH-------Hhccccc-hHHhhcccccccCHHHHHHHHHHHHHhcCCCcccccccCCCCccccceeec Confidence 88888754442111 1111100 0000000000 00000 00000 000011112244 Q ss_pred chhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEecCCCc-c- Q lcl|Aclame:pro 62 GIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIRDEKD-W- 138 (449) Q Consensus 62 ~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~-~- 138 (449) .+++.||+..|+=++-+.++|..+++.. ..+.+++++. .+++..+.+++..+-.+|++++-+.++.+.. + T Consensus 75 n~~~~i~~~~A~lv~~e~~~i~v~~~~~-------~~e~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~i~ 147 (508) T protein:vir:15 75 NMAKTAARRIASVVFNEKAEIHVKDNNE-------ADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIA 147 (508) T ss_pred chHHHHHHHHHhhhhCCCceEEeCCchH-------HHHHHHHHHHhccHHHHHHHHHHHHhhcCceEEEEEEeCCeeEEE Confidence 7999999999999999998887543221 1122344333 3577788888888888899998888854321 1 Q ss_pred ----c--cccccc-CceeeEEEeccccCCh---hhhhc---------------------cccccccCCceeEEeeecccC Q lcl|Aclame:pro 139 ----N--LPATKG-RGLQKVSVSWAGSLKV---AEWDT---------------------GINSKTYGQPKLWKYTERLPN 187 (449) Q Consensus 139 ----~--~Pl~~~-~~l~~i~v~~~~~i~~---~~~~~---------------------Dp~s~~yg~P~~y~i~~~~~~ 187 (449) + -|+..+ .++..+.++.+..... ..+.+ .-.+...|.|.-+.--+...+ T Consensus 148 ~v~ad~~~P~~~d~~~~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~ 227 (508) T protein:vir:15 148 WVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKE 227 (508) T ss_pred EEcCCeeEEEEEcCCCeEEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhcCcccchhhcccccC Confidence 1 144322 2332222111110000 00000 000111122111000000000 Q ss_pred CCccceEE-cccee--eeccC--------CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHH Q lcl|Aclame:pro 188 GSSRRVDI-HPDRV--FILGD--------YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNL 256 (449) Q Consensus 188 ~~~~~~~I-H~SRl--i~~~~--------~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l 256 (449) - ...+.+ +-.|. ..|.. ....|+|++..+.+.+..++.+......-+ +..-..+ -+ ..++ T Consensus 228 l-~~~~~~~g~~~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i--~v-----~~~~ 298 (508) T protein:vir:15 228 L-APQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEI-RLGQKHI--AV-----QPGM 298 (508) T ss_pred C-CcceEecCCCcceeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHH-Hhcccce--ee-----chHH Confidence 0 001111 22232 12211 234699999999998988888866655443 2111111 11 1111 Q ss_pred HhhhccChHHHHHHHHHHHHHHhccccceee--cCCCceEEeeccc--CChHHHHHHHHHHHHhhhcCCceeeeccCccc Q lcl|Aclame:pro 257 ASLYGVSIDELQDKFNEVAGEINRGNDVLMT--TQGATVTPLVTSV--ADPTATYNVNLQTAAAGVDIPTRILIGNQQAE 332 (449) Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~ed~~~~~~~l--sgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg 332 (449) ....+.+. ..+. ...+....+-. +.+..++.++..+ ....+.++.+.+.+...+|++- --||-...+ T Consensus 299 l~~d~~~~----~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~-~~f~~~~~~ 369 (508) T protein:vir:15 299 LRFDDEHK----PTFD----TEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLST-GTFSYSNDG 369 (508) T ss_pred hcCCCCCc----cccC----CCCeeEEeccCCCCCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCc-hhcccccCc Confidence 11111111 0111 00011100111 1223477776654 3477788888888888999984 566655545 Q ss_pred cc-cch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-------cC---------CCCCCceEEeCCCCCCCHHHHH Q lcl|Aclame:pro 333 RS-STE---DQKYFNARCQSRRVDLSFEIEDFCDKLIELK-------II---------DAVAKKAVIWDDLNEQTGTEKL 392 (449) Q Consensus 333 ~~-s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~-------~~---------~~~~~~~~~f~pL~~~sekE~A 392 (449) .. +++ ..+.-|.++..+|..+...+.+++..++..+ .+ ..+.+++|.|++-..+++.+.+ T Consensus 370 ~~TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~ 449 (508) T protein:vir:15 370 VKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQL 449 (508) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCCcceEEEeCCCCCCCHHHHH Confidence 43 345 4566788888888777666666655444331 11 1234689999999988877655 Q ss_pred HHHHHHHHHHHHHHHcCCc---------cccCHHHHHHHhc---CCCCCCCCCCCCCcchhhcccc Q lcl|Aclame:pro 393 TNAKTMGEINQTMLGSGDN---------PAFSREEIRTAAG---YDNDDEEPLGEEDGDEEDKATD 446 (449) Q Consensus 393 ei~~~~A~a~~~~~~~g~~---------~~~~~~e~r~~~~---~~~~~~~~~~~~~~~ee~~~~~ 446 (449) +... .++.+|.+ +-++.+|++++.. -+.....+.+.........+.| T Consensus 450 ~~~~-------~~v~aGi~s~e~~i~~~~g~~deea~~el~ri~~E~~~~~~~~~~~~~~~g~~ge 508 (508) T protein:vir:15 450 EEDA-------KVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) T ss_pred HHHH-------HHHhcCCCCHHHHHHhcCCCChHHHHHHHHHHHHhccccCccccccccCCCCCCC Confidence 4433 33344421 2234444433221 0111111111111111111111 No 154 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=98.71 E-value=9.1e-08 Score=59.18 Aligned_cols=404 Identities=10% Similarity=0.042 Sum_probs=183.5 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCH----HHHHHHHHcCchhHHHHhhhHHHHh Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTY----ENLYSLYRRGGIAHGAVEKLVGKCW 76 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~----~~l~~~Y~~~~l~r~iVd~pa~d~~ 76 (449) |+++-. ...... ++.. . +..|. +..-..+...-....+.. +-++.|=++..-...++++.-.-.+ T Consensus 1 ~~~~~~--~~~p~~--~~g~-----~-~~~~~-~~~~~~~~~~e~~~~lr~~~~~~ly~~m~e~D~~i~s~l~~rk~av~ 69 (469) T protein:vir:10 1 MTERVK--TAAPVS--EAGY-----V-FGSGV-VDGWTVWDPFEQTPELQWPQSVAVYSRMDNEDSRVTSLLEAISLPIR 69 (469) T ss_pred CCCccc--CCCCcc--chhh-----h-hhccc-ccchhhccccccccccccccchHHHHHHHhhChHHHHHHHHHHHHHh Confidence 888765 221111 1111 1 11111 100011111111111211 1223344457778888888888888 Q ss_pred cCCcEEecCCChhhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhccccccEEEEEEec-CCCccccc Q lcl|Aclame:pro 77 QTNPEIIEGDDADDSEDETSWEKKSKQVFT--------------NRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLP 141 (449) Q Consensus 77 r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~--------------~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~P 141 (449) +..|+|..+.++++ ....+...+..... ......|.+.+-.+..||+|++=+.-+ ++.. ..+ T Consensus 70 ~~~w~v~p~~~~~e--~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~~~~-~dG 146 (469) T protein:vir:10 70 STPWRIRANGASDE--VTEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPRNQS-PDG 146 (469) T ss_pred cCCceEecCCCCHH--HHHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeeccccc-CCC Confidence 88888865443322 22222222222111 013345556565567799999866543 2111 000 Q ss_pred ccccCceeeEEEeccccCChhhhhccccccccCCceeEEeee-------cccCCCccceEEccceeeecc----CCCCCc Q lcl|Aclame:pro 142 ATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTE-------RLPNGSSRRVDIHPDRVFILG----DYSEDA 210 (449) Q Consensus 142 l~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~-------~~~~~~~~~~~IH~SRli~~~----~~~~~G 210 (449) .- .+..|. ++.+-+...|..|+. .+ ...++-.. ........+..+.+.+.+.+. .+..+| T Consensus 147 ~~---~~~~l~--~rp~~~i~~~~~~~~---~~-l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~k~i~~~~~~~~g~p~g 217 (469) T protein:vir:10 147 RF---WLRKLA--PRPQWTISKFNVAPD---GG-LESIEQIAPPARTRGSLYVANIAPPEIPVNRLVVYTRNKRPGQWQG 217 (469) T ss_pred ce---eeeeee--ecCcccceeeeeccC---Cc-eeeeeecCcccccccccccCCCCccccccCcEEEEEecCCCCCccc Confidence 00 111221 222222222222211 11 11111000 000112235667777877765 345679 Q ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc-ceeecC Q lcl|Aclame:pro 211 IGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND-VLMTTQ 289 (449) Q Consensus 211 ~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 289 (449) .++++.||....--.....-++..+-+...-....++ .....++..+.+.+++..+..+.+ .+++.+ T Consensus 218 ~gLlr~~~~~~~fK~~~~~~w~~f~EryG~P~~vgky------------~~~a~~~ek~~l~~a~~~~~~g~~a~~iip~ 285 (469) T protein:vir:10 218 KSILRSAYKHWLLKDKLLRIEAATAERNGMGIPVGTA------------SSATDEDEVRKMAALARSVRGGINAGVGLAQ 285 (469) T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcCCcceEEec------------CCCCCHHHHHHHHHHHHHHhcCCceEEEccC Confidence 9999999987543333322222222221111111111 111234445556666666654544 456677 Q ss_pred CCceEEeecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccc-ch-hHHHHHHHHHHHHHhhhHHHHH-HHHHH Q lcl|Aclame:pro 290 GATVTPLVTSVAD--PTATYNVNLQTAAAGVDIPTRILIGNQQAERSS-TE-DQKYFNARCQSRRVDLSFEIED-FCDKL 364 (449) Q Consensus 290 ~ed~~~~~~~lsg--l~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s-~e-D~~nyyd~I~~~Qe~~~~p~~~-~l~~l 364 (449) +.+++.++.+-++ ...+++..-.+||-+.--. | |..++.||..+ ++ -.....+.+++....+..-+.+ ++..| T Consensus 286 ~~~ie~~ea~g~~~~~~~li~~~d~~Isk~iLG~-t-lTs~~~gGS~a~~~vh~ev~~d~~~sDa~~i~~tln~~li~~l 363 (469) T protein:vir:10 286 GQILELLGVSGNLPDIRRAIEGHDRSIALSGLAH-F-LNLDGKGGSYALASVLEDPFTQAVHAYATSICRIANQHIIEDL 363 (469) T ss_pred CceEEEeecCCCchHHHHHHHHHHHHHHHHHhcc-c-ccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 8889988876332 3445555555665332111 1 12222233323 22 2445666666666555555653 56667 Q ss_pred HHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCcc--ccCHHHHHHHhcCCCCCCCCCCCCCc---- Q lcl|Aclame:pro 365 IELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNP--AFSREEIRTAAGYDNDDEEPLGEEDG---- 438 (449) Q Consensus 365 ~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~--~~~~~e~r~~~~~~~~~~~~~~~~~~---- 438 (449) +...++....-..|+|...-. ..+..|+++++++++|... -++.+.+|+..+++.+.+........ T Consensus 364 ~~lN~g~~~~~P~~~~~~~e~--------~~~~~a~~i~~l~~~G~~~~~~~~~~~~~e~~gip~~~~~~~~~~~~~~~~ 435 (469) T protein:vir:10 364 VDINFGVDTPAPVLTFDPIGS--------RQDLTAAAVKLLYDAGVFDDDPAVKRAIRQRFNLPSELNDTPSAEPEEPAA 435 (469) T ss_pred HHhcCCCCCCccEEEecCCCC--------cHHHHHHHHHHHHhcCCccCccccHHHHHHHhCCCCCCCCcccccchhccc Confidence 777776544445777754321 2245688999999999533 35678899999987654321110000 Q ss_pred -chhh--------cccccCC Q lcl|Aclame:pro 439 -DEED--------KATDSAA 449 (449) Q Consensus 439 -~ee~--------~~~~~~a 449 (449) .... ....+++ T Consensus 436 ~~~~~~~~~~~~~~~~~~~~ 455 (469) T protein:vir:10 436 VPNQSAAPARTRSSGNADAR 455 (469) T ss_pred CCCCCccccccCCCCCcccc Confidence 0000 0000000 No 155 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=98.71 E-value=9.1e-08 Score=59.18 Aligned_cols=414 Identities=8% Similarity=-0.022 Sum_probs=176.5 Q ss_pred Cchhh-HHHHH-hhhHHHHHHHHHHHHHHHHhh-cC-cccccch-----hccCCcccCCHHHHHHHHHcCchhHHHHhhh Q lcl|Aclame:pro 1 MTDKL-TLAVN-HALNDARMARARMGLMVPTMG-LD-NKRHSAW-----CEYGFPELVTYENLYSLYRRGGIAHGAVEKL 71 (449) Q Consensus 1 ~~~~~-~~~v~-~~~~~~~~~~~~~~~~~~~~g-~~-t~r~~~~-----~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~p 71 (449) .+.++ +--++ |...-.+... .....-.... .. ..|+... ............--.. -.+.+++.||+.. T Consensus 15 ~~~e~i~~~i~~~~~~~~r~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k--i~~n~~~~ivd~~ 91 (474) T protein:vir:10 15 ILPKHIEALIESHKDDRERMVN-LYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNK--LNNSFDSEIVDTR 91 (474) T ss_pred CCHHHHHHHHHHhhhhhHHHHH-HHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCcccc--cccchHHHHHHhH Confidence 22111 11111 1111111111 0111100000 00 0000000 0000000000000000 1267999999999 Q ss_pred HHHHhcCCcEEecCCChh-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccC-- Q lcl|Aclame:pro 72 VGKCWQTNPEIIEGDDAD-DSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGR-- 146 (449) Q Consensus 72 a~d~~r~~~~i~~~~~~~-~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~-- 146 (449) +.=++.+++++...++.+ +.. +.+.++++... ++..+..++.+.+..||.|++++.++. |...-..+++.. T Consensus 92 ~~yl~g~pv~~~~~~~~~~~e~----~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~~~~i~p~~~~ 167 (474) T protein:vir:10 92 VGYLHGVPVTYDLDENAEKNEK----LKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDIRIKNIDPYNVI 167 (474) T ss_pred hhheeccceeEeeCCCCcchHH----HHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCeeEEEEEcccceE Confidence 999999999986543322 222 22333333332 577788899999999999999998853 322112222211 Q ss_pred --------ceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCC-CccceEEccceeeeccC--CCCCcchhHH Q lcl|Aclame:pro 147 --------GLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNG-SSRRVDIHPDRVFILGD--YSEDAIGFLE 215 (449) Q Consensus 147 --------~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~-~~~~~~IH~SRli~~~~--~~~~G~s~l~ 215 (449) .+..++. |........ ..--.-..|..-..|.+.....++ ......-|..-.+.+.. +..+|.|.++ T Consensus 168 ~v~d~~~~~~~~i~~-~~~~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e 245 (474) T protein:vir:10 168 FVGDNILEPTYSLRY-FYEKDDDNG-TDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPNNKEMIGDAE 245 (474) T ss_pred EEEcCCCceEEEEEE-EEEeeCCCc-eEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecCCCCCCCchH Confidence 1222222 111000000 000000122233344443221111 11122345554333221 3356888898 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccce-eecCCCceE Q lcl|Aclame:pro 216 PAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVL-MTTQGATVT 294 (449) Q Consensus 216 ~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ed~~ 294 (449) .+-.-+..++.+....+..+...+...+.+. +. .+.++.... +... +.+ +.+++.+++ T Consensus 246 ~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~--------g~-----~~~~~~~~~-------~~~~-~~i~~~~~~~~~~ 304 (474) T protein:vir:10 246 KVIHLIDAYDLTMSDASSEISQTRLAYLVLR--------GM-----GMSEEMIQE-------TQKS-GAFELFDKDMDVK 304 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhhc--------cC-----CCCchhhhh-------hhhc-ceeEecCCCCcee Confidence 8877777777776655554433322222211 10 111111111 1111 222 234444555 Q ss_pred Ee--ecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH-HH---HHHHHHHHhhhHHHHHHHHHHHHH- Q lcl|Aclame:pro 295 PL--VTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY-FN---ARCQSRRVDLSFEIEDFCDKLIEL- 367 (449) Q Consensus 295 ~~--~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n-yy---d~I~~~Qe~~~~p~~~~l~~l~~~- 367 (449) .+ +.+..+....++.+.+.|...+++|-.- ++. -+|+.|+.-++. |. ..+..+|..+...+.+++..++.. T Consensus 305 ~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~-~~~-~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l 382 (474) T protein:vir:10 305 YLTKDVNDTMIENHLDRIEKNIMRFAKSVNFN-SDE-FNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSAL 382 (474) T ss_pred EEeccCCHHHHHHHHHHHHHHHHHHhCCcccc-ccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 55 4556789999999999999999999632 222 233333333332 32 233444444444454444433322 Q ss_pred --h-cCCCC---CCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCcccc-CH-HHHHH---Hh--cCCCCCCCCCC Q lcl|Aclame:pro 368 --K-IIDAV---AKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAF-SR-EEIRT---AA--GYDNDDEEPLG 434 (449) Q Consensus 368 --~-~~~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~-~~-~e~r~---~~--~~~~~~~~~~~ 434 (449) . .+..+ .++.+.|+|-...+++|.|++..+.+..++.-.-....+.+ ++ .|+.. +- ......+.... T Consensus 383 ~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl~g~iS~et~~~~l~~v~d~~~E~eri~~E~~e~~~~~~~~~~~ 462 (474) T protein:vir:10 383 KRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINLKGQVSERTRLGQSQLVDDVDYELDEMEKESLEFNDKLPDIDEG 462 (474) T ss_pred hhccCCCCccccccceEEeCCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccccCC Confidence 1 11112 36899999999999999999988765333221111111222 22 22221 10 01111111112 Q ss_pred CCCcchhhcccc Q lcl|Aclame:pro 435 EEDGDEEDKATD 446 (449) Q Consensus 435 ~~~~~ee~~~~~ 446 (449) +.+++++..++| T Consensus 463 ~~~~~~~~~~s~ 474 (474) T protein:vir:10 463 DANDKSQNNQSE 474 (474) T ss_pred CcCCCCccccCC Confidence 222222333333 No 156 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=98.71 E-value=9.1e-08 Score=59.18 Aligned_cols=414 Identities=8% Similarity=-0.022 Sum_probs=176.5 Q ss_pred Cchhh-HHHHH-hhhHHHHHHHHHHHHHHHHhh-cC-cccccch-----hccCCcccCCHHHHHHHHHcCchhHHHHhhh Q lcl|Aclame:pro 1 MTDKL-TLAVN-HALNDARMARARMGLMVPTMG-LD-NKRHSAW-----CEYGFPELVTYENLYSLYRRGGIAHGAVEKL 71 (449) Q Consensus 1 ~~~~~-~~~v~-~~~~~~~~~~~~~~~~~~~~g-~~-t~r~~~~-----~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~p 71 (449) .+.++ +--++ |...-.+... .....-.... .. ..|+... ............--.. -.+.+++.||+.. T Consensus 15 ~~~e~i~~~i~~~~~~~~r~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k--i~~n~~~~ivd~~ 91 (474) T protein:vir:94 15 ILPKHIEALIESHKDDRERMVN-LYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNK--LNNSFDSEIVDTR 91 (474) T ss_pred CCHHHHHHHHHHhhhhhHHHHH-HHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCcccc--cccchHHHHHHhH Confidence 22111 11111 1111111111 0111100000 00 0000000 0000000000000000 1267999999999 Q ss_pred HHHHhcCCcEEecCCChh-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccC-- Q lcl|Aclame:pro 72 VGKCWQTNPEIIEGDDAD-DSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGR-- 146 (449) Q Consensus 72 a~d~~r~~~~i~~~~~~~-~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~-- 146 (449) +.=++.+++++...++.+ +.. +.+.++++... ++..+..++.+.+..||.|++++.++. |...-..+++.. T Consensus 92 ~~yl~g~pv~~~~~~~~~~~e~----~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~~~~i~p~~~~ 167 (474) T protein:vir:94 92 VGYLHGVPVTYDLDENAEKNEK----LKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDIRIKNIDPYNVI 167 (474) T ss_pred hhheeccceeEeeCCCCcchHH----HHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCeeEEEEEcccceE Confidence 999999999986543322 222 22333333332 577788899999999999999998853 322112222211 Q ss_pred --------ceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCC-CccceEEccceeeeccC--CCCCcchhHH Q lcl|Aclame:pro 147 --------GLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNG-SSRRVDIHPDRVFILGD--YSEDAIGFLE 215 (449) Q Consensus 147 --------~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~-~~~~~~IH~SRli~~~~--~~~~G~s~l~ 215 (449) .+..++. |........ ..--.-..|..-..|.+.....++ ......-|..-.+.+.. +..+|.|.++ T Consensus 168 ~v~d~~~~~~~~i~~-~~~~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e 245 (474) T protein:vir:94 168 FVGDNILEPTYSLRY-FYEKDDDNG-TDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPNNKEMIGDAE 245 (474) T ss_pred EEEcCCCceEEEEEE-EEEeeCCCc-eEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecCCCCCCCchH Confidence 1222222 111000000 000000122233344443221111 11122345554333221 3356888898 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccce-eecCCCceE Q lcl|Aclame:pro 216 PAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVL-MTTQGATVT 294 (449) Q Consensus 216 ~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ed~~ 294 (449) .+-.-+..++.+....+..+...+...+.+. +. .+.++.... +... +.+ +.+++.+++ T Consensus 246 ~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~--------g~-----~~~~~~~~~-------~~~~-~~i~~~~~~~~~~ 304 (474) T protein:vir:94 246 KVIHLIDAYDLTMSDASSEISQTRLAYLVLR--------GM-----GMSEEMIQE-------TQKS-GAFELFDKDMDVK 304 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhhc--------cC-----CCCchhhhh-------hhhc-ceeEecCCCCcee Confidence 8877777777776655554433322222211 10 111111111 1111 222 234444555 Q ss_pred Ee--ecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH-HH---HHHHHHHHhhhHHHHHHHHHHHHH- Q lcl|Aclame:pro 295 PL--VTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY-FN---ARCQSRRVDLSFEIEDFCDKLIEL- 367 (449) Q Consensus 295 ~~--~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n-yy---d~I~~~Qe~~~~p~~~~l~~l~~~- 367 (449) .+ +.+..+....++.+.+.|...+++|-.- ++. -+|+.|+.-++. |. ..+..+|..+...+.+++..++.. T Consensus 305 ~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~-~~~-~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l 382 (474) T protein:vir:94 305 YLTKDVNDTMIENHLDRIEKNIMRFAKSVNFN-SDE-FNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSAL 382 (474) T ss_pred EEeccCCHHHHHHHHHHHHHHHHHHhCCcccc-ccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 55 4556789999999999999999999632 222 233333333332 32 233444444444454444433322 Q ss_pred --h-cCCCC---CCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCcccc-CH-HHHHH---Hh--cCCCCCCCCCC Q lcl|Aclame:pro 368 --K-IIDAV---AKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAF-SR-EEIRT---AA--GYDNDDEEPLG 434 (449) Q Consensus 368 --~-~~~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~-~~-~e~r~---~~--~~~~~~~~~~~ 434 (449) . .+..+ .++.+.|+|-...+++|.|++..+.+..++.-.-....+.+ ++ .|+.. +- ......+.... T Consensus 383 ~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl~g~iS~et~~~~l~~v~d~~~E~eri~~E~~e~~~~~~~~~~~ 462 (474) T protein:vir:94 383 KRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINLKGQVSERTRLGQSQLVDDVDYELDEMEKESLEFNDKLPDIDEG 462 (474) T ss_pred hhccCCCCccccccceEEeCCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccccCC Confidence 1 11112 36899999999999999999988765333221111111222 22 22221 10 01111111112 Q ss_pred CCCcchhhcccc Q lcl|Aclame:pro 435 EEDGDEEDKATD 446 (449) Q Consensus 435 ~~~~~ee~~~~~ 446 (449) +.+++++..++| T Consensus 463 ~~~~~~~~~~s~ 474 (474) T protein:vir:94 463 DANDKSQNNQSE 474 (474) T ss_pred CcCCCCccccCC Confidence 222222333333 No 157 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=98.70 E-value=9.6e-08 Score=59.06 Aligned_cols=412 Identities=10% Similarity=-0.008 Sum_probs=169.3 Q ss_pred Cc--hh--------hHHHHHhhhH--HHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHH Q lcl|Aclame:pro 1 MT--DK--------LTLAVNHALN--DARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAV 68 (449) Q Consensus 1 ~~--~~--------~~~~v~~~~~--~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iV 68 (449) |+ ++ |+-.+++-.. ..+..+ -..+..+.-..-..+....... .+ ..--...+++.|| T Consensus 31 ~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~-l~~Yy~g~~~i~~~~~~~~~~~-~~---------~~ki~~n~~k~Iv 99 (511) T protein:vir:99 31 YDGTESDLLQNVNEVSKYIEHHMDYQRPRLKV-LSDYYEGKTKNLVELTRRKEEY-MA---------DNRVAHDYASYIS 99 (511) T ss_pred cchhhhhhhccHHHHHHHHHHHHHhhHHHHHH-HHHHhcccCccccccCcccccc-cC---------cceeecchHHHHH Confidence 21 11 2222221110 001101 1111111100000000000000 00 0012358899999 Q ss_pred hhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccC Q lcl|Aclame:pro 69 EKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGR 146 (449) Q Consensus 69 d~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~ 146 (449) +..+.=++-+++++..+++.. . +.+++++.. ++..+..++.+....||.|++++..+ +|......+++.. T Consensus 100 ~~~~~yl~g~p~~~~~~d~~~----~----~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~~i~~~~p~~ 171 (511) T protein:vir:99 100 DFINGYFLGNPIQYQDDDKDV----L----EAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMS 171 (511) T ss_pred HHHHhhhcccCceeecCchHH----H----HHHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccce Confidence 999999999999986544322 1 223333322 46677788888889999999999885 3322222222211 Q ss_pred -----------ceeeEEEeccccCChhhhhcc-ccccccCCc-eeEEeeecccCC-C----ccceEEccce---eeeccC Q lcl|Aclame:pro 147 -----------GLQKVSVSWAGSLKVAEWDTG-INSKTYGQP-KLWKYTERLPNG-S----SRRVDIHPDR---VFILGD 205 (449) Q Consensus 147 -----------~l~~i~v~~~~~i~~~~~~~D-p~s~~yg~P-~~y~i~~~~~~~-~----~~~~~IH~SR---li~~~~ 205 (449) .+.....+|.....-. ...+ ..-...+.| ..|+......++ . ......|+-- ++.|.+ T Consensus 172 ~~~vyd~~~~~~~~~~vr~~~~~~~~~-~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n 250 (511) T protein:vir:99 172 TFVIYDNTIERNSIAGVRYLRTKPIDK-TDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSN 250 (511) T ss_pred eEEEEcCCCCCceEEEEEEEEeeeccc-CccceEEEEEEEeCCcEEEEEecCCccccccccccccccCCCCccceEEecC Confidence 1111111111100000 0000 000011111 111211110000 0 0011223322 233332 Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHH-H--HHHH-hcc Q lcl|Aclame:pro 206 YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNE-V--AGEI-NRG 281 (449) Q Consensus 206 ~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~--~~~~-~~~ 281 (449) ...|.|.++.+..-+..++.+....+..+...+...+.+.- .. .....+....... + .... ... T Consensus 251 -n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (511) T protein:vir:99 251 -NERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKG--------NL---NLDPVEVRKQKEANVLFLEPTVYAD 318 (511) T ss_pred -CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhchhhhhcc--------Cc---ccCchhhcccccccceecccccccc Confidence 34688889988888888888776666655433322222211 00 0001111100000 0 0000 001 Q ss_pred ccceeecCCCceEE--eecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH----HHHHHHHHHHhhhH Q lcl|Aclame:pro 282 NDVLMTTQGATVTP--LVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY----FNARCQSRRVDLSF 355 (449) Q Consensus 282 ~~~~l~~~~ed~~~--~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n----yyd~I~~~Qe~~~~ 355 (449) .+......+-+++. .+.+..+....++.+.+.|...+.+|-.-. +.- +|+.|+.-++- -...++.+|..+.. T Consensus 319 ~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~-~~~-~gn~Sg~Alk~~~~~l~~ka~~k~~~~~~ 396 (511) T protein:vir:99 319 SEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKD-DNF-SGTQSGEAMKYKLFGLEQRTKTKEGLFTK 396 (511) T ss_pred cccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccc-ccc-cccchHHHHHHHHHHHHHHHHHHHHHHHH Confidence 11111222334544 455667899999999999999999997532 221 23333223332 23334444434444 Q ss_pred HHHHHHHHHHHH-h---cCCC---CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccC-H-HHHHHHh--- Q lcl|Aclame:pro 356 EIEDFCDKLIEL-K---IIDA---VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFS-R-EEIRTAA--- 423 (449) Q Consensus 356 p~~~~l~~l~~~-~---~~~~---~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~-~-~e~r~~~--- 423 (449) .+.+++..++.. + .+.. ..++++.|+|-...+.+|.+++..+.+..++.-......+-++ + +|+.... T Consensus 397 ~l~~~~~li~~~~~~~~~~~~~~~~~~i~i~f~~~~p~n~~e~~~~~~kl~GiiS~et~l~~l~~v~D~~~E~~ri~~E~ 476 (511) T protein:vir:99 397 GLRRRAKLLETILKNTRSIDVSKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDPELEVKKIEEDE 476 (511) T ss_pred HHHHHHHHHHHHHHhcCCcccccccccceEEeCCCCCcCHHHHHHHHHHHhccCCHHHHHHhCCCCCCHHHHHHHHHHHH Confidence 454444333322 1 1111 2367999999999999999998877654433211111122232 2 3442110 Q ss_pred -----------cCCCCC-CCCCCCCCcchhhcccc Q lcl|Aclame:pro 424 -----------GYDNDD-EEPLGEEDGDEEDKATD 446 (449) Q Consensus 424 -----------~~~~~~-~~~~~~~~~~ee~~~~~ 446 (449) ..++.. ++...+..+++++.+.| T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~e 511 (511) T protein:vir:99 477 KESIKKAQKNMYQDPRNINDDEQDDSTKDSIDKKE 511 (511) T ss_pred HHHHHHHhhcccccCCCCCCCCCCCCCcCcccccC Confidence 111110 00011111111111111 No 158 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=98.68 E-value=1e-07 Score=58.87 Aligned_cols=386 Identities=15% Similarity=0.061 Sum_probs=147.7 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) |++-=..-++.....-+-.+.|...... =..| . +.. . ..+... ..++.+......++++|||..++=+.=.|| T Consensus 1 ~~~~~~~~i~~l~~~~~~~~~r~~~l~~-Yy~G-~-~~i-~--~~~~~~-~~~~~~~k~~~n~~~~ivd~~~~~l~~~g~ 73 (441) T protein:vir:80 1 MNSDELALIEGMYDRIQRLSSWHCCIEG-YYEG-S-NRV-R--DLGVAI-PPELQRVQTVVSWPGIAVDALEERLDWLGW 73 (441) T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-C-Ccc-h--hcCccc-chhhhhhhhhcchHHHHHHHHHhhhccccc Confidence 4433111122211111111111111100 0011 1 111 0 011111 223444455677899999999998766665 Q ss_pred EEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCc----------e- Q lcl|Aclame:pro 81 EIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRG----------L- 148 (449) Q Consensus 81 ~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~----------l- 148 (449) +. + ++.+ +...++ ..++.....++.+.+.+||-|++++..+ +|...-.++++... + T Consensus 74 ~~--~---d~~~----l~~i~~---~n~~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~ 141 (441) T protein:vir:80 74 TN--G---DGYG----LDGVYA---ANRLATASCDVHLDALIFGLSFVAIIPHGDGTVSVRPQSPKNCTGKFSADGSRLD 141 (441) T ss_pred cC--C---ChHH----HHHHHH---hcCHHHHHHHHHHHHhhcCeeEEEEEeCCCCceEEEEEccceEEEEEeCCCCcee Confidence 42 2 1111 222222 1245556677777788899998888874 33332233333211 1 Q ss_pred eeEEEeccccCChhhhhcccc-ccccCCceeEEeeecccCCCccceE----Eccce---eeeccCCC----CCcchhHHH Q lcl|Aclame:pro 149 QKVSVSWAGSLKVAEWDTGIN-SKTYGQPKLWKYTERLPNGSSRRVD----IHPDR---VFILGDYS----EDAIGFLEP 216 (449) Q Consensus 149 ~~i~v~~~~~i~~~~~~~Dp~-s~~yg~P~~y~i~~~~~~~~~~~~~----IH~SR---li~~~~~~----~~G~s~l~~ 216 (449) ..+.++... . .+.. -.-|..-..|++... +.+.... -|.-- |++|.+++ .+|.|.+.. T Consensus 142 ~~~~~~~~~-~------~~~~~~~vy~~~~~~~~~~~---~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~l~~ 211 (441) T protein:vir:80 142 AGLVVQQTC-D------PEVVEAELLLPDVIVQVERR---GSREWVEVDRIPNVLGAVPLVPIVNRRRTSRIDGRSEITR 211 (441) T ss_pred EEEEEEEEe-c------CceEEEEEEecCeEEEEEEc---CCcceeeccccccCCCceeEEEeeccccCCccCCcccchh Confidence 111111100 0 0000 001211222222111 1111111 12221 23343332 357876643 Q ss_pred -HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHH-HHHHHHHHHHHhccccceeecC---CC Q lcl|Aclame:pro 217 -AYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDEL-QDKFNEVAGEINRGNDVLMTTQ---GA 291 (449) Q Consensus 217 -~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~---~e 291 (449) +..-+..++.+...........+...+.+. +...++. ...... .+. . ...+.. ++ T Consensus 212 ~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~--------------G~~~~~~~~~~~~~---~~~-~--i~~~~~~~~~~ 271 (441) T protein:vir:80 212 SIRAYTDEAVRTLLGQSVNRDFYAYPQRWVT--------------GVSADEFSQPGWVL---SMA-S--VWAVDKDDDGD 271 (441) T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCceeeee--------------cCCccccccchhhh---ccc-c--cccCCCCCCCC Confidence 434334444443322221111111111110 0000110 011110 010 1 111111 22 Q ss_pred ceEEeecccCChH---HHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH----HHHHHHHHHHhhhHHHHHHHHHH Q lcl|Aclame:pro 292 TVTPLVTSVADPT---ATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY----FNARCQSRRVDLSFEIEDFCDKL 364 (449) Q Consensus 292 d~~~~~~~lsgl~---d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n----yyd~I~~~Qe~~~~p~~~~l~~l 364 (449) ..+..+.+-+++. +.+......+++.++||...| |.++...+|++=++. --..++.+|..+.+.+.+++. | T Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~-g~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~-l 349 (441) T protein:vir:80 272 TPNVGSFPVNSPTPYSDQMRLLAQLTAGEAAVPERYF-GFITSNPPSGEALAAEESRLVKRAERRQTSFGQGWLSVGF-L 349 (441) T ss_pred cceeEecCccchHHHHHHHHHHHHHHhcccCCCHHHh-ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H Confidence 2344443334444 455566889999999997544 655443334333332 223333333334444444444 4 Q ss_pred HHHhc---CCCC---CCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCCCCCc Q lcl|Aclame:pro 365 IELKI---IDAV---AKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGEEDG 438 (449) Q Consensus 365 ~~~~~---~~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~~~~~ 438 (449) +..-. +..+ .++++.|+|-...+..|.|+...+. +++|.. ..+.+.++...++.+.. .. . -. T Consensus 350 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~e~ad~~~kl-------~~~g~~-~~s~~~~~~~l~~~~~e--~~-~-~~ 417 (441) T protein:vir:80 350 AAKALDSRVDEADFFGDVGLRWRDASTPTRAATADAVTKL-------VGAGIL-PADSRTVLEMLGLDDVQ--VE-A-VM 417 (441) T ss_pred HHHHhcCCCcccccceeeeEEeCCCCCcCHHHHHHHHHHH-------HhcCcc-cccHHHHHHhCCCCHHH--HH-H-HH Confidence 43322 2222 3678999999999988877665444 344411 11222333333322110 00 0 00 Q ss_pred chhhcccccCC Q lcl|Aclame:pro 439 DEEDKATDSAA 449 (449) Q Consensus 439 ~ee~~~~~~~a 449 (449) .|..++.+.-+ T Consensus 418 ~e~~e~~~~~~ 428 (441) T protein:vir:80 418 RHRAESSDPLA 428 (441) T ss_pred HHHHHHHHHHH Confidence 01111111101 No 159 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=98.68 E-value=1.1e-07 Score=58.69 Aligned_cols=403 Identities=9% Similarity=-0.013 Sum_probs=165.3 Q ss_pred CchhhHHHHHhhhHHHHHH-HHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMA-RARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTN 79 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~ 79 (449) |+.+. ++..++.-... ..+.....-- ..|.. +..+... ++......-...-...++++.||+..+.=++-++ T Consensus 30 ~~~~~---i~~~i~~~~~~~~~~~~~~~~y-Y~g~~-~~i~~~~--~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~ 102 (481) T protein:vir:10 30 LKEEN---LRNFISRHQTEQVPRLEMLESY-YLNRN-TDILAGE--RRLQKYGDKADHRAVHNYAKYVSRFIVGYLTGNP 102 (481) T ss_pred cCHHH---HHHHHHHHHHHHHHHHHHHHHH-hcCCC-cccccCc--cccccccccccceeecchHHHHHHHHHhhhccCC Confidence 33221 11111110000 0011110000 11110 0000000 0000000000111256899999999999999999 Q ss_pred cEEecCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCc---------- Q lcl|Aclame:pro 80 PEIIEGDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRG---------- 147 (449) Q Consensus 80 ~~i~~~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~---------- 147 (449) +++...++..+. .+.++... ++..++.++.+.+..||.|++++..+ ||...-..+++... T Consensus 103 ~~~~~~d~~~~~--------~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~~~~d~dg~~~i~~~~p~~~~~v~d~~~~~ 174 (481) T protein:vir:10 103 ITITHQDNQTND--------KIIELNDLNDADEVNSDLALNLSIYGRAYEIVYRDFEDRDTFKVLDPKSTFVVYDQTLDK 174 (481) T ss_pred ceEecCChhHHH--------HHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCCCCeEEEEEEcccceEEEEcCCCCC Confidence 988665433221 22222222 56677888888999999999999885 33222122222111 Q ss_pred -eeeEEEeccccCChhhhhcccccc------ccCCceeEEeeecccCCCccceEEcc-cee--eeccCCCCCcchhHHHH Q lcl|Aclame:pro 148 -LQKVSVSWAGSLKVAEWDTGINSK------TYGQPKLWKYTERLPNGSSRRVDIHP-DRV--FILGDYSEDAIGFLEPA 217 (449) Q Consensus 148 -l~~i~v~~~~~i~~~~~~~Dp~s~------~yg~P~~y~i~~~~~~~~~~~~~IH~-SRl--i~~~~~~~~G~s~l~~~ 217 (449) +.....+|+. .|.... -|..-..|.+.....+.......-|. .+| +.|.. ..+|.|.++.+ T Consensus 175 ~~~~~i~~~~~--------~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-~~~g~~~~~~v 245 (481) T protein:vir:10 175 KVVAGVRYFEK--------QDKDKVPVQHVEVYTTDKIYYIEIKGGTYHRVEEVEHYYNDVPIIEYLN-DQFKQGDFENV 245 (481) T ss_pred ceEEEEEEEEE--------eeCCCceEEEEEEEecCeEEEEEecCCceeecccccccCCceeEEEeec-CCCCCCchhhH Confidence 1111111110 010000 11111122221110000000011232 232 22322 34688888887 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceE--E Q lcl|Aclame:pro 218 YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVT--P 295 (449) Q Consensus 218 ~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~--~ 295 (449) ..-+..++.+....+..+...+...+.+. +... ...+......................+++-+++ + T Consensus 246 ~~lida~~~~~s~~~~~~~~~~~~~~~~~--------g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 314 (481) T protein:vir:10 246 IALIDLYDSAQSDTANYMTDLNDAMLAII--------GNVD---LDSEDAKAFRDANMIHLEPGTNANGSEGKAEVKYVY 314 (481) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCceeEee--------cCcC---CCccchhhhhhccceeccccccccCCCCCcceeEEe Confidence 77777777766555444322222222111 1111 011111110000000000000001111222444 4 Q ss_pred eecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHH----HHHHHHHHHHHhhhHHHHHHHHHHHHH-hcC Q lcl|Aclame:pro 296 LVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQK----YFNARCQSRRVDLSFEIEDFCDKLIEL-KII 370 (449) Q Consensus 296 ~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~----nyyd~I~~~Qe~~~~p~~~~l~~l~~~-~~~ 370 (449) .+.+..++...++...+.|...+++|- .-+|.. +++.|+.=++ .-...++.+|..+...+.+++..++.. +.. T Consensus 315 ~~~~~~~~~~~~~~l~~~i~~~s~~p~-~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 392 (481) T protein:vir:10 315 KQYDVAGVEAYKKRLQNDIHKYTNTPD-LNDEQF-SGVQSGESMKYKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNLT 392 (481) T ss_pred ecCCHHHHHHHHHHHHHHHHHHhCCcc-cccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 455567899999999999999999995 345432 3333333232 333444444444444444444433322 221 Q ss_pred C--C--CCCceEEeCCCCCCCHHHHHHHHHHHHHHHH--HHHHcCCcccc-CH-HHHHH---Hh----cC-CC---CCCC Q lcl|Aclame:pro 371 D--A--VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQ--TMLGSGDNPAF-SR-EEIRT---AA----GY-DN---DDEE 431 (449) Q Consensus 371 ~--~--~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~--~~~~~g~~~~~-~~-~e~r~---~~----~~-~~---~~~~ 431 (449) . . ..++++.|+|-...++++.|++..+.+..++ +++.. .+-+ ++ +|+.. +- .. +. .+.. T Consensus 393 ~~~~~~~~~i~v~f~~~~~~~~~~~a~~~~kl~g~is~et~~~~--l~~i~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~ 470 (481) T protein:vir:10 393 GLKQHNYAELTITFTPNLPKSMMESINAFNALSGGVSESTRLSL--LDFIDNPKEELEKMQEEEAQREKQADKRGYGEAF 470 (481) T ss_pred CCCccccceeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHh--CCCCCCHHHHHHHHHHHHHHHHhhhhhccCCccC Confidence 1 1 2368999999999999999998876543221 12221 1222 22 33321 10 00 00 0111 Q ss_pred CCCCCCcchhh Q lcl|Aclame:pro 432 PLGEEDGDEED 442 (449) Q Consensus 432 ~~~~~~~~ee~ 442 (449) +..++.+|.++ T Consensus 471 ~~~~~~dd~~g 481 (481) T protein:vir:10 471 ENHLNVDDSNG 481 (481) T ss_pred CCCCCCCCCCC Confidence 11111122222 No 160 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=98.68 E-value=1.2e-07 Score=58.60 Aligned_cols=417 Identities=12% Similarity=0.003 Sum_probs=157.6 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) |++-=.--++...+...-.+.++... .......++-.+ .+.. .+.++..+-...+++++|||.+++-+.=+|| T Consensus 12 l~~~~~~~~~~L~~~~~~~~~~~~~~--~~Yy~G~~~~~~----~~~~-~p~~~r~~~~v~nw~~~~Vd~~a~rl~~~Gf 84 (474) T protein:vir:81 12 LSNDENALINGLLAQIENLRWKNLLR--TSYYENKRTIQY----VGTL-IPPQYFNLGLVLGWTGKAVDALARRCNLEGF 84 (474) T ss_pred CChhHHHHHHHHHHHHHHHhhHHHHH--HHHhccCCChhh----cccc-ccHHHHHHHhhcChHHHHHHHHHhhhcccce Confidence 33322211221111111111111110 000111111000 1111 1234444434567789999999998888998 Q ss_pred EEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCc---ccccccccCceeeEEEeccc Q lcl|Aclame:pro 81 EIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKD---WNLPATKGRGLQKVSVSWAG 157 (449) Q Consensus 81 ~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~---~~~Pl~~~~~l~~i~v~~~~ 157 (449) ++ .+++.++.. +.+.++ .+++-....++.+-+..||-|++++.-+++.+ .-.+..+..-+...++..+ T Consensus 85 ~~-~d~~~~~~~----l~~iw~---~N~ld~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i~~~sp~~~~~~~D~~~~- 155 (474) T protein:vir:81 85 VW-PDGDLDSLG----GTEVVD---DNHLLSEIDSAIVAAMQHGPAFLINTVGEDDEPEALIHVKDASEATGEWNRRRR- 155 (474) T ss_pred EC-CCCCccchH----HHHHHH---hcChhHHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceEEEEEeCCCC- Confidence 74 332222222 112221 11233334445555557888887777643221 1122222211111111111 Q ss_pred cCChh--hhhcc----ccccccCCc-eeEEeeecccCCCc-cceEEccce--eeeccCCC----CCcchhH-HHHHHHHH Q lcl|Aclame:pro 158 SLKVA--EWDTG----INSKTYGQP-KLWKYTERLPNGSS-RRVDIHPDR--VFILGDYS----EDAIGFL-EPAYNAFV 222 (449) Q Consensus 158 ~i~~~--~~~~D----p~s~~yg~P-~~y~i~~~~~~~~~-~~~~IH~SR--li~~~~~~----~~G~s~l-~~~~~~l~ 222 (449) .+... .+..| +....++-| ..|++.....++.. ....-|+-- ++.|.+++ ..|.|.+ +++..... T Consensus 156 ~~~~al~~~~~~~~g~~~~~~ly~~~~~~~~~~~~~~~~w~~~~~~~~~gvPvV~~~n~~~~~~~~G~s~i~e~v~~l~d 235 (474) T protein:vir:81 156 GLNNLLSIIDKDKEGKVLSLALYLDNETVTAQRDKATLKWQVDRDEHVYGVPAQVLPYKPAPKRPFGQSRITKPMMGLQD 235 (474) T ss_pred cceeeeEEEEEcCCCcEEEEEEEeCCcEEEEEEcCccceeeeccCCCCCCcceEEecccccccCcCCccccchhHHHHHH Confidence 11110 01111 111122222 22222211111000 001122221 45555442 2477765 56665555 Q ss_pred HHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHh---ccccceee-cCCCceEEe-e Q lcl|Aclame:pro 223 SLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEIN---RGNDVLMT-TQGATVTPL-V 297 (449) Q Consensus 223 ~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~-~~~ed~~~~-~ 297 (449) .+.++.....-.. .-+........++. ..... .........+...+.++. ...+.... ..+-++.++ + T Consensus 236 a~~r~~~~~~~~~-----e~~a~pqr~i~G~~-~~~~~-d~d~~~~~~~~~~~~~i~~~~~d~d~~~~~~~~~~~~q~~~ 308 (474) T protein:vir:81 236 AGVRELARREGHM-----DVFSYPEFWLLGAD-ESALK-NADGTIKSVWEARLGRIKGLPDDADADIPQLARADVKQFPA 308 (474) T ss_pred HHHHHHHHHHHHH-----HHhcchhheeecCC-hhhcc-cccccccchhhhhHHHHhcCCCcccccccccccccccccCC Confidence 5555433211110 00111110001111 00000 001111122222222221 11110000 011133443 4 Q ss_pred cccCChHHHHHHHHHHHHhhhcCCceeeecc-Cccccccch----hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-- Q lcl|Aclame:pro 298 TSVADPTATYNVNLQTAAAGVDIPTRILIGN-QQAERSSTE----DQKYFNARCQSRRVDLSFEIEDFCDKLIELKII-- 370 (449) Q Consensus 298 ~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gq-s~gg~~s~e----D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~-- 370 (449) +++.+.-+.+.....++|+.++||..-| |- +....+|.+ -....-..++.+|+.+-..+.+.+...+...-+ T Consensus 309 a~l~~~~~~l~~~~~~~a~~t~iP~~~l-G~~~~~np~SaeAi~a~~~~l~~kae~k~~~fg~~l~~~~rla~~i~~~~~ 387 (474) T protein:vir:81 309 ASPDAHWSDINGLAKLFAREASLPDTAV-AISGLSNPTSAESYDASQYELIAEAEGAVDDFTPALRKAFIRALAMKNKVA 387 (474) T ss_pred CChhHHHHHHHHHHHHHHhhhCCCHHHh-cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC Confidence 5677888999999999999999997554 42 223323333 234455566666666656555554433333221 Q ss_pred --CCCC---CceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCCCCCcch----- Q lcl|Aclame:pro 371 --DAVA---KKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGEEDGDE----- 440 (449) Q Consensus 371 --~~~~---~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~~~~~~e----- 440 (449) ..++ .+.+.|.+...+|..++|+...|.+++...+ .+.+-+++..|+.+.+-+-.-.+...+ T Consensus 388 ~~~~~~~~~~~~v~W~d~~~~s~a~~aDa~~Kl~~a~~~~--------~~~~~~~~~lg~t~~~i~~~~~~~~~~~~~~~ 459 (474) T protein:vir:81 388 IDEIPDEWKSIDAKWRDPRYLSKSAQADAGMKQLAAVPWL--------AETEVGLELIGLTPQQARRAMADKRRVQGRGT 459 (474) T ss_pred ccccchhhccceeEecCCCccCHHHHHHHHHHHHhcccCC--------CcHHHHHhhcCCCHHHHHHHHHHHHHHhHHHH Confidence 1222 4688999999999988766555544432211 111222333333221100000000000 Q ss_pred --hhcccccCC Q lcl|Aclame:pro 441 --EDKATDSAA 449 (449) Q Consensus 441 --e~~~~~~~a 449 (449) .-.+..+.+ T Consensus 460 ~~~l~~~~~~~ 470 (474) T protein:vir:81 460 LQALIDRSNNG 470 (474) T ss_pred HHHHHhcCCCC Confidence 000000000 No 161 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=98.65 E-value=1.5e-07 Score=58.04 Aligned_cols=384 Identities=9% Similarity=0.020 Sum_probs=160.6 Q ss_pred CchhhHHHH-H-hhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDKLTLAV-N-HALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~~~~~v-~-~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) .+.++-... + |..+..+.... ..+..+.-..-..+.+.....-........ .+ ..++++.||+..+.=++.+ T Consensus 26 ~~~~~i~~~i~~~~~~~~~~~~~-~~yY~g~~~i~~~~~~~~~~~~~~~~~~~~---ki--~~n~~~~Iv~~~~~~l~g~ 99 (468) T protein:vir:96 26 TQEEMILRLITKHKENVEDITVG-ERYYNHQPDVLFNAPKRNVKGEIDPFKPDW---RM--YTNYHQNLVDQKVAYAVAN 99 (468) T ss_pred CcHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCcccccccccccccccccccccc---cc--ccchHHHHHHHHHhhhccC Confidence 222222111 1 11111111110 111111100000111110000000100101 11 3679999999999999999 Q ss_pred CcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccC----------- Q lcl|Aclame:pro 79 NPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGR----------- 146 (449) Q Consensus 79 ~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~----------- 146 (449) ++++..+++.. . +.+.+++..++..++.++.+.+..||.|++++.++ +|...-..+++.. T Consensus 100 p~~~~~~d~~~----~----~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~~~~~~~ 171 (468) T protein:vir:96 100 PVTYGTEDEKS----L----KTIQEVLNHKWDDKLVDILTAASNKGVEWIQPYVDEQGEFKTFRVPAEQAIPIWTNKERD 171 (468) T ss_pred CceeccCChHH----H----HHHHHHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcCCCceEEEEEcccceEEEEcCCCCC Confidence 99986544321 1 22233333456667777888888999999999885 3322122222211 Q ss_pred ceeeEEEeccccCChhhhhccccccccCCc---eeEEeeecc--------cCCCccce----EEccce---eeeccCCCC Q lcl|Aclame:pro 147 GLQKVSVSWAGSLKVAEWDTGINSKTYGQP---KLWKYTERL--------PNGSSRRV----DIHPDR---VFILGDYSE 208 (449) Q Consensus 147 ~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P---~~y~i~~~~--------~~~~~~~~----~IH~SR---li~~~~~~~ 208 (449) .+..+..+|... ... .-.++.| ..|...... ..+...+. .-|.-- ++.|.+ .. T Consensus 172 ~~~~~ir~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvv~~~n-~~ 242 (468) T protein:vir:96 172 ELKAFIRLYELD--GGE------RVEYWTANDVTFYELKDGQLIPDYYQGEEHVQAHYYVGNKSMSWNRVPFIPFKN-NP 242 (468) T ss_pred ceEEEEEEEEec--Cce------EEEEEeCCeEEEEEEcCCceeecccccccccccceeeccccccCCcccEEEecC-CC Confidence 111111111110 000 0001111 111111000 00000011 112222 122222 23 Q ss_pred CcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeec Q lcl|Aclame:pro 209 DAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTT 288 (449) Q Consensus 209 ~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (449) .|.|.++.+..-+..++.+....+..+-..+...+.+. + ......++... .+. ....+.+. T Consensus 243 ~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~--------g---~~~~~~~~~~~-------~~~-~~~~i~~~ 303 (468) T protein:vir:96 243 QEVSDLFMYKTIIDAMDKRLSDTQNTFDEATELIYVLK--------G---YEGEDLEEFMY-------NLK-YYKAINVD 303 (468) T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCceeeee--------c---CCccccchhhh-------hhh-cCceEEec Confidence 48888888777777777776555544422222212111 1 11111111111 111 12223333 Q ss_pred C--CCceEEe--ecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH----HHHHHHHHHHhhhHHHHHH Q lcl|Aclame:pro 289 Q--GATVTPL--VTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY----FNARCQSRRVDLSFEIEDF 360 (449) Q Consensus 289 ~--~ed~~~~--~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n----yyd~I~~~Qe~~~~p~~~~ 360 (449) . +.+.+.+ +.+..+....++.+.++|...+++|-. .+ ..-||+.|+.-++. -...+..+|..+...+.++ T Consensus 304 ~d~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~-~~-~~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~ 381 (468) T protein:vir:96 304 GDGSGGVDTIQIDVPVQSAKEYLDMLRDYVIEFGQGVDF-QQ-DKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQEL 381 (468) T ss_pred CCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCcccc-cc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2 2244444 455668999999999999999999953 22 22233333333332 2333444444444545555 Q ss_pred HHHHHHHhcCC--CCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCC---------- Q lcl|Aclame:pro 361 CDKLIELKIID--AVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDND---------- 428 (449) Q Consensus 361 l~~l~~~~~~~--~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~---------- 428 (449) +..++.. .+. .+.++.+.|++-...+++|.|++.++ +| .+|.+.+.+..+.-.+ T Consensus 382 ~~li~~~-~g~~~d~~~i~i~f~~~~p~d~~e~a~~~~~----------~g---~iS~et~i~~l~~v~D~~~E~~ri~~ 447 (468) T protein:vir:96 382 LQYIIDF-YKLSIKVQDVEITFNFNVMVNELEQSQIGVN----------SQ---YLSKETVVTNHPWVDDPVAEMERIDQ 447 (468) T ss_pred HHHHHHH-hCCCcccceeeEEecCCCCcCHHHHHHHHHh----------cC---CCchHHHHHhCCCCCCHHHHHHHHHH Confidence 4443332 232 23578999999999999988875432 23 3333333332211100 Q ss_pred -------CCCCCCCCCcchhhcccccC Q lcl|Aclame:pro 429 -------DEEPLGEEDGDEEDKATDSA 448 (449) Q Consensus 429 -------~~~~~~~~~~~ee~~~~~~~ 448 (449) .+......++++ ++ T Consensus 448 E~~~~~~~~~~~~~~~~~~------~~ 468 (468) T protein:vir:96 448 EELALPSIEEGLNGKENNE------PT 468 (468) T ss_pred HHHHHHHHhhccCCCCCCC------CC Confidence 000000000000 00 No 162 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=98.64 E-value=1.5e-07 Score=57.97 Aligned_cols=405 Identities=13% Similarity=0.001 Sum_probs=155.1 Q ss_pred CchhhHHH--------------HHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHH Q lcl|Aclame:pro 1 MTDKLTLA--------------VNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHG 66 (449) Q Consensus 1 ~~~~~~~~--------------v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~ 66 (449) ||-.+.+. -++.....+... ...+.. | . +..- . .+.. .+.++.+......++++ T Consensus 1 ~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~r~~~-l~~YY~-----G-~-~~i~-~--~~~~-~~~~~~~~~~v~n~~~~ 68 (486) T protein:vir:42 1 MTAPLPGMEEIEDPAVVREEMISAFEDASKDLAS-NTSYYD-----A-E-RRPE-A--IGVT-VPREMQQLLAHVGYPRL 68 (486) T ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHH-HHHHhc-----c-c-Ccch-h--cccc-cchhHhhhhhccchHHH Confidence 33222211 222221111111 111111 1 1 1110 0 1111 22334444445567899 Q ss_pred HHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccC Q lcl|Aclame:pro 67 AVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGR 146 (449) Q Consensus 67 iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~ 146 (449) |||..++-+.=.||++- +++..+ ..+.+.+++ .++-....++.+-+..||-|++++..+.+.... ...+ T Consensus 69 iVd~~~~~l~~~g~~~~-~~~~~~----~~~~~i~~~---N~~d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~---~~~~ 137 (486) T protein:vir:42 69 YVDSVAERQAVEGFRLG-DADEAD----EELWQWWQA---NNLDIEAPLGYTDAYVHGRSFITISKPDPQLDL---GWDQ 137 (486) T ss_pred HHHHHHhhhcccceecC-CCchhH----HHHHHHHHh---cChhHHHHHHHHHHhhcCceEEEEecCCccccc---ccCC Confidence 99999998877887642 211111 112222221 234445556667777899998888764321111 1111 Q ss_pred ceeeEEEeccccCCh-----------h--hhhc-cc---cccccCCce-eEEeeecccCCCc-c-ceEEccce---eeec Q lcl|Aclame:pro 147 GLQKVSVSWAGSLKV-----------A--EWDT-GI---NSKTYGQPK-LWKYTERLPNGSS-R-RVDIHPDR---VFIL 203 (449) Q Consensus 147 ~l~~i~v~~~~~i~~-----------~--~~~~-Dp---~s~~yg~P~-~y~i~~~~~~~~~-~-~~~IH~SR---li~~ 203 (449) +...|.+++..++.+ . .+.. +. ..-.++.|. .|++... ++.. . ...-|+-- |+.| T Consensus 138 ~~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~h~~g~vPvv~~ 215 (486) T protein:vir:42 138 NVPIIRVEPPTRMHAEIDPRINRVSKAIRVAYDKEGNEIQAATLYTPMETIGWFRA--DGEWAEWFNVPHGLGVVPVVPL 215 (486) T ss_pred CeeEEEEecccceEEEEeCCCCCeEEEEEEEEecCCCeEEEEEEEcCCcEEEEEec--CCcEEeecceecCCCCceEEEe Confidence 111111111111100 0 0000 10 001112221 2222111 1110 0 01124432 2334 Q ss_pred cCCC----CCcchhHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHH Q lcl|Aclame:pro 204 GDYS----EDAIGFLEP-AYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEI 278 (449) Q Consensus 204 ~~~~----~~G~s~l~~-~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 278 (449) .+++ .+|.|.+++ +...+..++++....+....-.+..++.+. ..+........+.+ .. .+ T Consensus 216 ~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~e~~a~p~~~i~---G~~~~~~~~~~~~~----~~-------~~ 281 (486) T protein:vir:42 216 PNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIF---GIKPEEIGVDSETG----QT-------LF 281 (486) T ss_pred ccccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchHHHhh---cCCccccccccccc----cc-------hh Confidence 4432 358888875 444444555543322221111111111110 00000000000000 00 11 Q ss_pred hccccceeecCCCceEEeecc---cCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHHHH----HHHHHHHH Q lcl|Aclame:pro 279 NRGNDVLMTTQGATVTPLVTS---VADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKYFN----ARCQSRRV 351 (449) Q Consensus 279 ~~~~~~~l~~~~ed~~~~~~~---lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~nyy----d~I~~~Qe 351 (449) ....+.++...+++.+..+.+ +....+.+.....++|+.+++|...| |..+...+|++=++.-+ ..++.+|. T Consensus 282 ~~~~~~~~~~~~~~~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~f-g~~~~n~~Sg~Al~~~~~~l~~ka~~~~~ 360 (486) T protein:vir:42 282 DAYLARILAFEDAEGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYL-STAADNPASAEAIRAAESRLIKKVERKNL 360 (486) T ss_pred hhhhchhcccCCCCceEEeecccCHHHHHHHHHHHHHHHhcccCCCHHHh-ccccCchhHHHHHHHHHHHHHHHHHHHHH Confidence 112223333334444444443 34455667777889999999998766 43333223333344322 23334444 Q ss_pred hhhHHHHHHHHHHHHHhcC-CCC---CCceEEeCCCCCCCHHHHHHHHHHHHHHHH------HHHHcCCccccCH---HH Q lcl|Aclame:pro 352 DLSFEIEDFCDKLIELKII-DAV---AKKAVIWDDLNEQTGTEKLTNAKTMGEINQ------TMLGSGDNPAFSR---EE 418 (449) Q Consensus 352 ~~~~p~~~~l~~l~~~~~~-~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a~~------~~~~~g~~~~~~~---~e 418 (449) .+.+.+.+++..++....+ ..+ .++.+.|.|-...|..+.|+...|.+++.. ++... .+ +++ +| T Consensus 361 ~f~~~l~~~~~l~~~~~~~~~~~~d~~~i~v~w~~~~~~s~~~~ad~~~kl~~~~~g~~s~et~~~~--lg-~~~d~~~e 437 (486) T protein:vir:42 361 MFGGAWEEAMRIAYRIMKGGDVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARID--MG-YSVKEREE 437 (486) T ss_pred HHHHHHHHHHHHHHHHhcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcccCCCCHHHHHhc--CC-CChhHHHH Confidence 4445555555433333222 122 368899999999999999988877665421 11111 11 222 23 Q ss_pred HHH---Hh--------c-CCCCCCCCCCCCCcchhhcccccCC Q lcl|Aclame:pro 419 IRT---AA--------G-YDNDDEEPLGEEDGDEEDKATDSAA 449 (449) Q Consensus 419 ~r~---~~--------~-~~~~~~~~~~~~~~~ee~~~~~~~a 449 (449) ++. +. . +......+...+...++ .+.+++| T Consensus 438 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 479 (486) T protein:vir:42 438 MRRWDEEEAAMGLGLLGTMVDADPTVPGSPSPTAP-PKPQPAI 479 (486) T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC-CCCCccc Confidence 321 10 0 00111111111111111 1111111 No 163 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=98.64 E-value=8.2e-08 Score=59.43 Aligned_cols=420 Identities=10% Similarity=-0.053 Sum_probs=170.9 Q ss_pred CchhhHHHHHhhhH----HHHHHHHHHHHHHHHhhcCcc----cccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhH Q lcl|Aclame:pro 1 MTDKLTLAVNHALN----DARMARARMGLMVPTMGLDNK----RHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLV 72 (449) Q Consensus 1 ~~~~~~~~v~~~~~----~~~~~~~~~~~~~~~~g~~t~----r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa 72 (449) ....++-+++.-.+ ..... +..+.-.. --++. +......++. +.. ...+.....+.+|++.||+..| T Consensus 3 ~~~~~~~~i~~w~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~w~-~~~-~~~~~~~~~~~~l~~~i~~~~A 77 (518) T protein:vir:78 3 VWSVMTRFIKGWLNGKPNGSEPE--LIPKYLPL-VPDNQKEWSKDSYLTSLWA-QGY-VPTVHDKLMNSGTGNEIVVVAA 77 (518) T ss_pred chhhHHHHHHHhhcCCCCccchh--ccHHHhhh-cccchhhhhhhhhhhhhcc-cCC-CCccccccccCChHHHHHHHHH Confidence 11222222222110 00000 00000000 00100 0000011110 000 0112233446789999999999 Q ss_pred HHHhcCCcEEecC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcc--------cccc Q lcl|Aclame:pro 73 GKCWQTNPEIIEG--DDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDW--------NLPA 142 (449) Q Consensus 73 ~d~~r~~~~i~~~--~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~--------~~Pl 142 (449) +=++-+..+|.-. +..+++.....+++.++ ..+++..+.+++..+-..||+++=+.+.+|+.. --|+ T Consensus 78 ~ll~~e~~~i~v~~~~~~d~e~~~~~l~~il~---~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~i~~v~ad~~~P~ 154 (518) T protein:vir:78 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALR---IDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFWID 154 (518) T ss_pred HhhcCCCceEEecCccccCcHHHHHHHHHHHH---hccHHHHHHHHHHHhhccCceEEEEEEECCeeEEEEEcCCeeEEE Confidence 9999999887432 22233322333333322 235667777777766677777776666544321 1133 Q ss_pred cccCceeeEEEeccccCChhh--hh-----cccc-----ccccCCceeEEeeeccc---CC------------------- Q lcl|Aclame:pro 143 TKGRGLQKVSVSWAGSLKVAE--WD-----TGIN-----SKTYGQPKLWKYTERLP---NG------------------- 188 (449) Q Consensus 143 ~~~~~l~~i~v~~~~~i~~~~--~~-----~Dp~-----s~~yg~P~~y~i~~~~~---~~------------------- 188 (449) ..+..+..+ +|+........ +. ..+. .-.|+ .|+|..... .+ T Consensus 155 ~~~g~~~~~-~f~~~~~~~~k~~~y~~lE~he~~~~~~~~~~~~---~~~I~n~ly~~~~~~~v~~~~~~~~~~l~~~~~ 230 (518) T protein:vir:78 155 FKNNEPFRF-NFFEEIPTSNKADIYYLVESREIKQWDKEGKKLS---GGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) T ss_pred eecCcEEEE-EEEEEeecCCcceeEEEEEeeccccccceeeccc---ceeEEEEEeeecCcccccccccccccccccccc Confidence 222222222 11211111000 00 0000 00111 112211100 00 Q ss_pred ---CccceEEc-ccee--eec-c----C----CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhH Q lcl|Aclame:pro 189 ---SSRRVDIH-PDRV--FIL-G----D----YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDF 253 (449) Q Consensus 189 ---~~~~~~IH-~SRl--i~~-~----~----~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~ 253 (449) ......++ -++. +.| . + ...+|+|++..+.+.+..++.+......-+ +..-.. +-+ . T Consensus 231 ~~~~~e~~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~-~~g~~~--i~v-----~ 302 (518) T protein:vir:78 231 TNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREG-EKTKTK--IAA-----S 302 (518) T ss_pred cccCccceeeccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHH-HhCCce--eee-----c Confidence 00001111 1221 111 1 1 123499999999999988888876655443 111111 111 1 Q ss_pred HHHHhhhccChH-HHHHHHHHHHHHHhccccceeecCC----CceEEeecccC--ChHHHHHHHHHHHHhhhcCCceeee Q lcl|Aclame:pro 254 TNLASLYGVSID-ELQDKFNEVAGEINRGNDVLMTTQG----ATVTPLVTSVA--DPTATYNVNLQTAAAGVDIPTRILI 326 (449) Q Consensus 254 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~----ed~~~~~~~ls--gl~d~~~~~~~~iaaas~IP~t~L~ 326 (449) .++......+.. ...-.+..- .+.....++ ..+.+ +.++.++..+- -....++.++..+...+|++-.. | T Consensus 303 ~~~l~~~~~~~~~~~~~~fd~~-~~~y~~i~~-~~~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G~s~~t-f 379 (518) T protein:vir:78 303 ERMFRKKVNKSTDKEEWSMNVD-EDYFMQFKG-TLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPAT-F 379 (518) T ss_pred hhHhccCCCCCCCccccccCCC-CceEEEecC-cCCCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhCCChhh-c Confidence 111111111111 000001100 000001100 01111 23777776653 46677778888888889998765 5 Q ss_pred ccCccccccch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---cC-------CCCCCceEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 327 GNQQAERSSTE---DQKYFNARCQSRRVDLSFEIEDFCDKLIELK---II-------DAVAKKAVIWDDLNEQTGTEKLT 393 (449) Q Consensus 327 Gqs~gg~~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~---~~-------~~~~~~~~~f~pL~~~sekE~Ae 393 (449) |-..+..++|| ...--|.+|..+|..+.+.+.+++..++... .+ ..+.+++|.|++-...+++++++ T Consensus 380 g~~~~~~TATei~s~~~~~~~t~~~~~~~~e~al~~l~~~i~~l~~~~~~~~~~~~~~~~~~v~i~f~D~i~~D~~~~~~ 459 (518) T protein:vir:78 380 NLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS 459 (518) T ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCCceeEEEEeCCCCCCCHHHHHH Confidence 76655555566 3445788888888766665655555443321 11 12236899999999999998888 Q ss_pred HHHHHHHH----HHHHHHcCCccccCHHHHHHHhc-CCC---CCCCCCCCCCcchhhcccccCC Q lcl|Aclame:pro 394 NAKTMGEI----NQTMLGSGDNPAFSREEIRTAAG-YDN---DDEEPLGEEDGDEEDKATDSAA 449 (449) Q Consensus 394 i~~~~A~a----~~~~~~~g~~~~~~~~e~r~~~~-~~~---~~~~~~~~~~~~ee~~~~~~~a 449 (449) +..+...+ ...++.. ..+-.+.+|+++++. +.. ..+.+.++ +...-++.- T Consensus 460 ~~~~~v~aGimS~e~~i~~-~~~~~~deea~~e~~ri~~E~~~~~~~~p~-----~~~g~~~~~ 517 (518) T protein:vir:78 460 TLNNMNSALAMSVEEKVKL-IHPKWEDEEIQAEVKRIYLENAIGEVPDPE-----AIGGMETKG 517 (518) T ss_pred HHHHHHhcCCCCHHHHHHH-hCCCCCHHHHHHHHHHHHHHhcccCCCCCc-----cccCCCCCC Confidence 66542221 1111111 001233333332210 000 00000000 000000000 No 164 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=98.63 E-value=1e-07 Score=58.93 Aligned_cols=375 Identities=11% Similarity=0.024 Sum_probs=166.3 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHH-cCchhHHHHhhhHHHHhcCC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYR-RGGIAHGAVEKLVGKCWQTN 79 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~-~~~l~r~iVd~pa~d~~r~~ 79 (449) |..++---..... ..-+.|+..... -.-|..+.+. .+.. -+.++...|+ ..+++++|||.+++=+.=+| T Consensus 1 ~~~~~i~~L~~~~---~~~~~r~~~~~~-yY~g~~~~~~-----~~~~-~p~~~~~~~~~v~nw~~~iVds~a~rl~~~G 70 (409) T protein:vir:16 1 MTEKGIGYLRFKL---SVHKRRAEMRYE-QYAMKHVDRF-----KGIT-IPQALSQQYRSILGWCAKGVDSLADRLVFRE 70 (409) T ss_pred CCHHHHHHHHHHH---HHHhHHHHHHHH-HHhccCchhh-----cchh-hhHHHHHHHhhhcChhHHHHHHhHhhccccc Confidence 7776642222111 101111111100 0111111000 0111 2234444343 23577999999999777677 Q ss_pred cEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCceeeEEEecccc Q lcl|Aclame:pro 80 PEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRGLQKVSVSWAGS 158 (449) Q Consensus 80 ~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~l~~i~v~~~~~ 158 (449) |+. ++.... ..++ .+++-.+..++.+-+.+||-|++++.-+ ||...-.+..+.......++..+ . T Consensus 71 f~~------~d~~l~----~i~~---~N~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~~i~~~sP~~~~~i~D~~~~-~ 136 (409) T protein:vir:16 71 FEN------DDFTVN----EIFE---ENNPDIFFDSTVLSALIASCSFTYISKGENDAVRLQVIEATNATGIIDPITG-L 136 (409) T ss_pred ccC------cchHHH----HHHH---hcChhHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEeecccc-c Confidence 642 111111 1221 1233445556666667889888777653 23222222222211111111100 1 Q ss_pred CChh--hhhcc----ccccccCCce-eEEeeecccCCCccceEEccce---eeeccCCC----CCcchhH-HHHHHHHHH Q lcl|Aclame:pro 159 LKVA--EWDTG----INSKTYGQPK-LWKYTERLPNGSSRRVDIHPDR---VFILGDYS----EDAIGFL-EPAYNAFVS 223 (449) Q Consensus 159 i~~~--~~~~D----p~s~~yg~P~-~y~i~~~~~~~~~~~~~IH~SR---li~~~~~~----~~G~s~l-~~~~~~l~~ 223 (449) +... .+..| +....++.|. .|.... .++.. ...-|+-- +++|.+++ ..|.|.+ +++..-... T Consensus 137 ~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~g~vPvV~f~n~~~~~~~~G~seI~~~v~~l~da 213 (409) T protein:vir:16 137 LTEGYAVLERDENNNVVLEAHFLPDRTDYYYR--DSRNN-ISIANPTGNPLLVPIIHRPDAVRPFGRSRITRSGMYWQSN 213 (409) T ss_pred ceeeeEEEEecCCCceEEEEEEecCcEEEEEe--cCccc-cceecCCCCcceEEecccccccccCCccccchhHHHHHHH Confidence 1100 01111 1111111121 111110 01111 11224444 45565432 4688876 666665555 Q ss_pred HHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecC---CC--ceEEe-e Q lcl|Aclame:pro 224 LEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQ---GA--TVTPL-V 297 (449) Q Consensus 224 ~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~e--d~~~~-~ 297 (449) +.++..-..-.. .-+........++ ..++ .....+.....++ ..+.+ ++ ++.++ + T Consensus 214 ~~r~~~~~~~~~-----e~~a~pqr~i~G~------d~d~--~~~~~~~~~~~~i------~~~~~d~~g~~~~v~q~~~ 274 (409) T protein:vir:16 214 AKRTLERADVTA-----EFYSFPQKYVTGL------SDDA--EPMETWKATVSSM------LQFTKDEDGDKPTLGQFTQ 274 (409) T ss_pred HHHHHHHHHHHH-----HHhcChhheeEec------CCCC--CccchhhhhhhHh------hccCCCCCCCCceEEecCC Confidence 555533211110 0011110000111 1111 1111222111111 11111 12 24333 3 Q ss_pred cccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cC Q lcl|Aclame:pro 298 TSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-----QKYFNARCQSRRVDLSFEIEDFCDKLIELK--II 370 (449) Q Consensus 298 ~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD-----~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~--~~ 370 (449) +++.+.-+.+.....++|+.+++|..-|-|.+. +-++++ ...-...++.+|+.+...+.+.+...+... .+ T Consensus 275 ~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~~--NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~~ 352 (409) T protein:vir:16 275 PSMSPFTEQLRTAAAGFAGETGLTLDDLGFVSD--NPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDVP 352 (409) T ss_pred CChhHHHHHHHHHHHHHhhhcCCCHHHcccccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Confidence 457788899999999999999999876665542 323332 334455666666666555555444323222 22 Q ss_pred CCCC---CceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCcccc-CHHHHHHHhcCCCCC Q lcl|Aclame:pro 371 DAVA---KKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAF-SREEIRTAAGYDNDD 429 (449) Q Consensus 371 ~~~~---~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~-~~~e~r~~~~~~~~~ 429 (449) ..++ +..+.|.|+..++....| ..|+++.+++++| +.+ ..+-+++..|++..+ T Consensus 353 ~~~~~~~~~~v~W~~~~~~~~~s~a----~~aDa~~Kl~~a~--~~~~~~~v~~~~~g~~~~d 409 (409) T protein:vir:16 353 YLREQFSKTKPKWEPLFEADASMLS----LIGDGAIKLNQAI--PEFINKDTIRDLTGIKGAE 409 (409) T ss_pred ccchhhccceEEecCCCCcchhhHH----HHHHHHHHHHhhc--ccccchhHHHHhccCCCCC Confidence 3333 468899998877754443 3578999999887 333 346668888888776 No 165 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=98.62 E-value=1.8e-07 Score=57.51 Aligned_cols=409 Identities=10% Similarity=0.044 Sum_probs=170.8 Q ss_pred Cc---hhhHHHHHh-hhH-HHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHH Q lcl|Aclame:pro 1 MT---DKLTLAVNH-ALN-DARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKC 75 (449) Q Consensus 1 ~~---~~~~~~v~~-~~~-~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~ 75 (449) +. +.|+-.++. ... ..+... -..+.. |.. +..... +... ......--....+++.||+..+.=+ T Consensus 38 ~~~~~~~i~~~i~~h~~~~~~rl~~-l~~yY~---g~~---~~i~~~---~~~~-~~~~~~~ki~~n~~k~Ivd~~~~yl 106 (502) T protein:vir:48 38 MVNNWELLKNFINHHKLRQAPRIQE-LLDYAR---GEN---HDVLKS---GRRK-DNEMADKRAVHNYGRMISKFKTGYL 106 (502) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH-HHHHhc---CCC---cccccc---cccc-ccccccceeecchHHHHHHHHhhhh Confidence 11 112211111 110 001111 011111 110 111000 0000 0000011134689999999999999 Q ss_pred hcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccC-------- Q lcl|Aclame:pro 76 WQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGR-------- 146 (449) Q Consensus 76 ~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~-------- 146 (449) +-+++++...++.++......+...++ ..++...+.++.+.+..||.|++++..+. |......+++.. T Consensus 107 ~g~p~~~~~~d~~~~~~~~~~l~~~~~---~N~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~i~~~~p~~~~~vydd~ 183 (502) T protein:vir:48 107 AGNPIRVEYDDNEDNSQNDDAIKRIGR---INDIDTHNRNLIRDLSQTGRAYEVIYRSEYDETRIKRLSPLETFVIYDNS 183 (502) T ss_pred cccCeeEecCCccchhHHHHHHHHHHh---hcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCceEEEEEcccceEEEEcCC Confidence 999999877665544433333333222 12556677788888889999999998853 332222222211 Q ss_pred ---c-eeeEEEeccccCChhhhhccccccccCCc-eeEEeeecccCCCccceEEccce---eeeccCCCCCcchhHHHHH Q lcl|Aclame:pro 147 ---G-LQKVSVSWAGSLKVAEWDTGINSKTYGQP-KLWKYTERLPNGSSRRVDIHPDR---VFILGDYSEDAIGFLEPAY 218 (449) Q Consensus 147 ---~-l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P-~~y~i~~~~~~~~~~~~~IH~SR---li~~~~~~~~G~s~l~~~~ 218 (449) . +..++. |....... ....-.++.+ ..|++... .+.......-|.-- |+.|.+ ...|.|.++.+. T Consensus 184 ~~~~~~~~ir~-~~~~~~~~----~~~~~~iyt~~~i~~~~~~-~~~~~~~~~~~~~g~vPvv~~~n-n~~g~sd~e~v~ 256 (502) T protein:vir:48 184 LEDNSIAAVRY-YNRGTLQN----AKDVVEIYTNQHIYTLDAS-DSFNEISVTPHAFGTVPITEFLN-NADGIGDYETEL 256 (502) T ss_pred CCCceEEEEEE-EEEeecCC----cEEEEEEEeCCeEEEEEeC-CceeeccceecCCCccceEEecC-CCCCCCchhhhH Confidence 1 111111 10000000 0000000111 11222100 00000011123222 222322 345888898888 Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccccee--ecCCCc--eE Q lcl|Aclame:pro 219 NAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLM--TTQGAT--VT 294 (449) Q Consensus 219 ~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~ed--~~ 294 (449) .-+..++.+....+..+...+...+.+. +.. ....++....+.. ...++-...... ...+-+ |- T Consensus 257 ~liDa~d~~~S~~~~~~~~~~~~~lv~~--------g~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~l 324 (502) T protein:vir:48 257 YLIDLYDSAESDTANHMSDMADAILAIY--------GDL---ALPQGMQASDMKR-TRLMQLKPPKSADGKEGTVKAEYL 324 (502) T ss_pred HHHHHHHHHHHHHHHHHHHhcCceeeee--------cCc---ccccccchhhhhh-cceeeccccccccccccCcceeEe Confidence 8777777776655554433222222221 100 0000111111100 000000000000 011223 44 Q ss_pred EeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH----HHHHHHHHHHhhhHHHHHHHHHHHHH-hc Q lcl|Aclame:pro 295 PLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY----FNARCQSRRVDLSFEIEDFCDKLIEL-KI 369 (449) Q Consensus 295 ~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n----yyd~I~~~Qe~~~~p~~~~l~~l~~~-~~ 369 (449) ..+.+..+....++.+.+.|...+++|-.- ++.. +|+.|+.-++. -...++.+|..+...+.+++..++.. +. T Consensus 325 ~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~-~~~~-~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~ 402 (502) T protein:vir:48 325 TKSYDVSGAEAYKTRLNKDIHVFTNTPDMS-DNHF-SGNASGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSL 402 (502) T ss_pred eecCCHHHHHHHHHHHHHHHHHHhCCCCcC-cccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 455666789999999999999999999633 3322 23333333332 23334444444445555555433332 11 Q ss_pred -CC----CCCCceEEeCCCCCCCHHHHHHHHHHHHHHHH--HHHHcCCcccc-CH-HHHHHH------hcCCCCC----C Q lcl|Aclame:pro 370 -ID----AVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQ--TMLGSGDNPAF-SR-EEIRTA------AGYDNDD----E 430 (449) Q Consensus 370 -~~----~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~--~~~~~g~~~~~-~~-~e~r~~------~~~~~~~----~ 430 (449) +. ...++.+.|+|-...+.+|.|++..+.+..++ +++.. .+.+ ++ +|+... ....... + T Consensus 403 ~~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl~g~iS~et~l~~--l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~ 480 (502) T protein:vir:48 403 VNEFKDFDESRLKITFTPNLPKSLYEQVSILNDLGGQVSQETALSL--SGLVENPTEELDKINEESSKIDFKGYPSYFYD 480 (502) T ss_pred cccccccccccceEEeCCCCCcCHHHHHHHHHHHhccCcHHHHHHh--CCCCCCHHHHHHHHHHHHHhhhhhcccccccc Confidence 11 12368999999999999999998877654432 22222 1222 22 344311 1111100 0 Q ss_pred C------CCCCCCcchhhcccc Q lcl|Aclame:pro 431 E------PLGEEDGDEEDKATD 446 (449) Q Consensus 431 ~------~~~~~~~~ee~~~~~ 446 (449) + ...+...+|.+...| T Consensus 481 ~~~~~~d~~~e~~~~~~~~~~~ 502 (502) T protein:vir:48 481 NVGKYTDEVKETHTDDFERVYE 502 (502) T ss_pred cccccCCCccCCCCcCcCCCCC Confidence 0 011111112222222 No 166 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=98.61 E-value=2e-07 Score=57.36 Aligned_cols=410 Identities=11% Similarity=0.051 Sum_probs=174.7 Q ss_pred Cch---hhHHHHH-hhhH-HHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHH Q lcl|Aclame:pro 1 MTD---KLTLAVN-HALN-DARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKC 75 (449) Q Consensus 1 ~~~---~~~~~v~-~~~~-~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~ 75 (449) +.+ .|+-.++ |... ..+... ...+.. |.. +.... +.........+......+++.||+..+.=+ T Consensus 37 ~~~~~~~l~~~i~~~~~~~~~r~~~-l~~yY~---g~~---~~i~~----~~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl 105 (501) T protein:vir:27 37 MVNNWELLKNFINHHKLRQAPRIQE-LLDYAR---GEN---HDVLQ----FGRRKDREMADKRAVHNYGRMISKFKTGYL 105 (501) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH-HHHHhc---CCC---ccccc----cCccCccccccceeccchHHHHHHHHhhhh Confidence 222 1222221 1111 111111 111211 111 11000 000000011111234689999999999999 Q ss_pred hcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccC-------- Q lcl|Aclame:pro 76 WQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGR-------- 146 (449) Q Consensus 76 ~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~-------- 146 (449) +-+++++...++.........+...++ ..++...+.++.+.+..||.|++++..+. |...-..+++.. T Consensus 106 ~g~p~~~~~~d~~~~~~~~~~l~~~~~---~n~~~~~~~~~~~~~~~~G~a~~~vy~ded~~~~i~~~~p~~~~~v~d~~ 182 (501) T protein:vir:27 106 AGNPIRVEYDDNDNNSQNDDTIKRIGR---INDIDSHNRTLIRDLSQTGRAYEVIYRNEYDETRIKRLNPLETFVIYDNS 182 (501) T ss_pred cccCeeEecCCccchHHHHHHHHHHHH---hcChhHHHHHHHHHHhhCCeEEEEEEeCCCCceEEEEEccceeEEEecCC Confidence 999999876665544333333332222 12566778888888899999999998853 222122222211 Q ss_pred ----ceeeEEEeccccCChhhhhccccccccCCc-eeEEeeecccCCCccceEEcc-ce--eeeccCCCCCcchhHHHHH Q lcl|Aclame:pro 147 ----GLQKVSVSWAGSLKVAEWDTGINSKTYGQP-KLWKYTERLPNGSSRRVDIHP-DR--VFILGDYSEDAIGFLEPAY 218 (449) Q Consensus 147 ----~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P-~~y~i~~~~~~~~~~~~~IH~-SR--li~~~~~~~~G~s~l~~~~ 218 (449) -+..++. |......... .--.++.+ ..|.+... .+.......-|. ++ |+.|.+ ...|.|.++.+. T Consensus 183 ~~~~~~~~ir~-~~~~~~~~~~----~~~~vyt~~~v~~~~~~-~~~~~~~~~~~~~g~vPvv~~~n-n~~g~sd~e~v~ 255 (501) T protein:vir:27 183 LEDNSIAAVRY-YNRGTLQNAK----DVVEIYTNEHIYTLDAS-DDFNEISVTTHAFGTVPITEFLN-NVDGIGDYETEL 255 (501) T ss_pred CCCceEEEEEE-EEeeecCCcE----EEEEEEeCCeEEEEEeC-CceeeccccccCCCcccEEEecC-CCCCCCchhhhH Confidence 1111211 1100000000 00000001 11111100 000000112232 22 233333 346889999888 Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHH-HHHHHhccccceeecCCCc--eEE Q lcl|Aclame:pro 219 NAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNE-VAGEINRGNDVLMTTQGAT--VTP 295 (449) Q Consensus 219 ~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ed--~~~ 295 (449) .-+..++.+....+..+...+...+.+.- . ......+....+.. .+-.............+-+ |-. T Consensus 256 ~liDa~d~~~S~~~~~~~~~~~~~~v~~g--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 324 (501) T protein:vir:27 256 YLIDLYDSAESDTANHMSDMADAILAIYG--------D---LALPKGMQASDMKRTRLMQLKPPKSADGKEGTVKAEYLT 324 (501) T ss_pred HHHHHHHHHHHHHHHHHHHhcCceeeeec--------C---ccCCcccchhhhhhcCceeecccccccCCCCCcceeeee Confidence 88888888776665554333333332211 0 00001111111110 0000000000000111223 444 Q ss_pred eecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH----HHHHHHHHHHhhhHHHHHHHHHHHHH-hc- Q lcl|Aclame:pro 296 LVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY----FNARCQSRRVDLSFEIEDFCDKLIEL-KI- 369 (449) Q Consensus 296 ~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n----yyd~I~~~Qe~~~~p~~~~l~~l~~~-~~- 369 (449) .+.+.+++...++.+.+.|...+++|-. -++.. +|+.|+.-++. -...++.+|..+...+.+++..++.. +. T Consensus 325 ~~~~~~~~~~~~~~l~~~I~~~s~~p~~-~~~~~-~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~ 402 (501) T protein:vir:27 325 KSYDVSGAEAYKTRLNRDIHIFTNIPDM-SDTNF-SGNTSGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLV 402 (501) T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCCccc-Ccccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc Confidence 4556678999999999999999999953 22322 23333222332 23334444444555555554433322 11 Q ss_pred C--CC--CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHH--HHHcCCccccC-H-HHHH---HH-h-----cCCCCCCC- Q lcl|Aclame:pro 370 I--DA--VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQT--MLGSGDNPAFS-R-EEIR---TA-A-----GYDNDDEE- 431 (449) Q Consensus 370 ~--~~--~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~--~~~~g~~~~~~-~-~e~r---~~-~-----~~~~~~~~- 431 (449) + .. ..++.+.|+|-...+.+|.|++..+.+..++. +++. .+-++ + +|+. ++ . ...+...+ T Consensus 403 ~~~~~~d~~~i~v~f~~~~p~n~~e~ad~~~kl~g~iS~et~l~~--l~~v~D~~~E~eri~~E~~e~~~~~~~~~~~~~ 480 (501) T protein:vir:27 403 NEFKDFDESLLKITFTPNLPKSLNEQVSILTGLGGQVSQETALSL--SGLVESPNEELDKINKEVSEIDFKGYSNDFNEH 480 (501) T ss_pred ccccccccccceEEeCCCCCcCHHHHHHHHHHHhccCcHHHHHHh--CCCCCCHHHHHHHHHHHHHhhhHhhhcCccccc Confidence 1 11 23588999999999999999988887654432 2222 22332 2 3332 11 1 01110000 Q ss_pred ------CCCCCCcchhhcccc Q lcl|Aclame:pro 432 ------PLGEEDGDEEDKATD 446 (449) Q Consensus 432 ------~~~~~~~~ee~~~~~ 446 (449) ...+..++|.+.+.| T Consensus 481 ~~~~~d~~~~~~~d~~e~~~~ 501 (501) T protein:vir:27 481 VGKYTDEVKETHTDDFERAYE 501 (501) T ss_pred cccccCCCCCCccccccccCC Confidence 011111222222222 No 167 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=98.61 E-value=3.5e-08 Score=61.49 Aligned_cols=262 Identities=9% Similarity=0.045 Sum_probs=126.5 Q ss_pred HhcCCcEEecCCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEE Q lcl|Aclame:pro 75 CWQTNPEIIEGDDADDSEDETSWEKKSK-QVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVS 152 (449) Q Consensus 75 ~~r~~~~i~~~~~~~~~~~~~~~e~~~~-~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~ 152 (449) .-+-.+.+....+..+. .+...++ +=....-+..+...+.+. -++|-|++++.- +... .+..|. T Consensus 1 ia~l~~~~~~~~~~~~~----~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r-~~~G---------~~~~l~ 66 (278) T protein:vir:78 1 MASLPLKMYEDYKVVNT----EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER-DIYH---------QPSKLF 66 (278) T ss_pred CccceeEEEecCccccc----HHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEE-CCCC---------cEEEEE Confidence 11122222221111111 1111111 000000011122222222 456777666654 2111 134555 Q ss_pred EeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHh Q lcl|Aclame:pro 153 VSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVE 228 (449) Q Consensus 153 v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~ 228 (449) |+....+++... +.|.|.+|++.. +.+..+.+.++.|+||... ...|.|.+..+...+.....+. T Consensus 67 ~l~~~~v~v~~~-------~~~~~~~y~~~~----~~g~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~ 135 (278) T protein:vir:78 67 LLNPDVVEMLIE-------NQSRELYYSIHA----ATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVR 135 (278) T ss_pred EECCceeEEEEc-------CCCceEEEEEEc----CCceEEEEccccEEEECCCCCCCCeeeccHHHHHHHHHHHHHHHH Confidence 555554443211 124567777752 2344578999999998533 3459999988877665433332 Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc-cceeecCCCceEEeecccCCh--HH Q lcl|Aclame:pro 229 GGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN-DVLMTTQGATVTPLVTSVADP--TA 305 (449) Q Consensus 229 ~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ed~~~~~~~lsgl--~d 305 (449) ... +..+... .. .+....+...++..+++.+.+....++. ..+++..+.+|+.++.+.... .+ T Consensus 136 ~~~---~~~~~~~-~~----------~i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e 201 (278) T protein:vir:78 136 TFN---LTEMQKP-DS----------FMLKYGSNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVA 201 (278) T ss_pred HHH---HHHhcCC-Cc----------EEEEeCCCCCHHHHHHHHHHHHHHhccCCCceecCCCceEEEccCChhHHHHHH Confidence 211 1111110 00 1111112223444555544444333333 345566677899988776544 46 Q ss_pred HHHHHHHHHHhhhcCCceeeeccCcccc-ccchh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC---C--ceE Q lcl|Aclame:pro 306 TYNVNLQTAAAGVDIPTRILIGNQQAER-SSTED-QKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVA---K--KAV 378 (449) Q Consensus 306 ~~~~~~~~iaaas~IP~t~L~Gqs~gg~-~s~eD-~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~---~--~~~ 378 (449) ......+.||.+.|||- .++|...++. ++.++ .+.||..+ +.|+.+.+..-+-..+..+.+ + +.| T Consensus 202 ~~~~~~~~Ia~~fgVpp-~~lg~~~~~~~sn~~~~~~~~~~~~-------l~P~~~~i~~~ln~~L~~~~e~~~g~~~~f 273 (278) T protein:vir:78 202 SENLTRERVANVFQLPS-VFLNARSNTNFAKNEELNRFYLQHT-------LLPIVKQYEEEFNRKLLTKTDREKIGILNL 273 (278) T ss_pred HHHHHHHHHHHHhCCCH-HHhCCCCCCCcccHHHHHHHHHHHH-------HHHHHHHHHHHHHhhcCChhHhcCCceEEE Confidence 67788999999999995 5557655443 33343 55666543 567766666555444443322 3 444 Q ss_pred EeCCC Q lcl|Aclame:pro 379 IWDDL 383 (449) Q Consensus 379 ~f~pL 383 (449) ..+-| T Consensus 274 ~~~~l 278 (278) T protein:vir:78 274 TLNLI 278 (278) T ss_pred ecccC Confidence 45555 No 168 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=98.57 E-value=2.6e-07 Score=56.69 Aligned_cols=409 Identities=12% Similarity=0.037 Sum_probs=158.8 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~ 80 (449) +-++|. -++.....+... ...+..+ +.+ . . ..++.+. +++........++++|||..++=+.=+|| T Consensus 12 ~i~~L~--~~~~~~~~r~~~-~~~Yy~g------~~~-i-~--~~~~~~~-~~~~~~~~~~n~~~~ivd~~a~~l~~~Gf 77 (488) T protein:vir:23 12 LRDQLL--DAFENKQNELKS-SKAYYDA------ERR-P-D--AIGLAVP-LDMRKYLAHVGYPRTYVDAIAERQELEGF 77 (488) T ss_pred HHHHHH--HHHHHHHHHHHH-HHHHHhc------ccc-h-h--hcCcccc-hhhhhhhhhcchHHHHHHHHHHhhhccce Confidence 333333 222222222211 1122211 111 1 0 0112221 22333334567889999999987767787 Q ss_pred EEecCCC-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEec Q lcl|Aclame:pro 81 EIIEGDD-----ADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSW 155 (449) Q Consensus 81 ~i~~~~~-----~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~ 155 (449) .+..... .++.+....+...++ ..++-.+..++.+.+..||-|++++..+.+.. +...+.+...|++++ T Consensus 78 ~~~~~~~~~~~~~~d~~~~~~l~~i~~---~N~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~---~~~~~~~~~~i~~~~ 151 (488) T protein:vir:23 78 RIPSANGEEPESGGENDPASELWDWWQ---ANNLDIEATLGHTDALIYGTAYITISMPDPEV---DFDVDPEVPLIRVEP 151 (488) T ss_pred eccCCcccccccccchhHHHHHHHHHH---hcChhHHHHHHHHHHhhcCceEEEEecCCccc---ccCCCCCcceEEEec Confidence 7532211 112222222222222 22455667778888888999988887643211 111111111122221 Q ss_pred cccCChh------------hhhcc-----ccccccCCc-eeEEeeecccCCCcc--ceEEccce---eeeccCCC----C Q lcl|Aclame:pro 156 AGSLKVA------------EWDTG-----INSKTYGQP-KLWKYTERLPNGSSR--RVDIHPDR---VFILGDYS----E 208 (449) Q Consensus 156 ~~~i~~~------------~~~~D-----p~s~~yg~P-~~y~i~~~~~~~~~~--~~~IH~SR---li~~~~~~----~ 208 (449) ..++.+. .+..+ ...-.++.| ..|++... ++... ...-|.-- |+.|.+++ . T Consensus 152 p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~ 229 (488) T protein:vir:23 152 PTALYAEVDPRTRKVLYAIRAIYGADGNEIVSATLYLPDTTMTWLRA--EGEWEAPTSTPHGLEMVPVIPISNRTRLSDL 229 (488) T ss_pred cceeEEEEecCCCceEEEEEEEEecCCCcEEEEEEEecCcEEEEEec--CCceEeccccccCCCCcceEEeccccccCCc Confidence 1111110 00000 000001111 11111110 01000 01113322 23444332 3 Q ss_pred CcchhHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccccee- Q lcl|Aclame:pro 209 DAIGFLEP-AYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLM- 286 (449) Q Consensus 209 ~G~s~l~~-~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 286 (449) .|.|.+++ +..-+..++++....+....-.+..++.+. ........... ......+. .+.+.+. T Consensus 230 ~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~---G~~~~~~~~~~----~~~~~~~~-------~~~~~v~~ 295 (488) T protein:vir:23 230 YGTSEISPELRSVTDAAAQILMNMQGTANLMAIPQRLIF---GAKPEELGINA----ETGQRMFD-------AYMARILA 295 (488) T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh---CCCcccccccc----cccchhhh-------hhhhhhcc Confidence 58887754 433333445544332222211111111111 00000100000 00011111 1111222 Q ss_pred ecCCCceEEeec---ccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHH----HHHHHHHHHHhhhHHHH Q lcl|Aclame:pro 287 TTQGATVTPLVT---SVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKY----FNARCQSRRVDLSFEIE 358 (449) Q Consensus 287 ~~~~ed~~~~~~---~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~n----yyd~I~~~Qe~~~~p~~ 358 (449) +.++++.+..+. ++.+..+.+.....++++.+++|..-| |.... +++++ =++. .-..++.+|+.+...+. T Consensus 296 ~~~g~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~-g~~~~-n~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~ 373 (488) T protein:vir:23 296 FEGGEGAHAEQFSAAELRNFVDALDALDRKAASYSGLPPQYL-SSSSD-NPASAEAIKAAESRLVKKVERKNKIFGGAWE 373 (488) T ss_pred CCCCCCceeEecCCCChHHHHHHHHHHHHHHhcccCCCHHHh-ccccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 223444443333 345566777777899999999997555 54333 23344 3333 33333334444545555 Q ss_pred HHHHHHHHHhcCC-CC---CCceEEeCCCCCCCHHHHHHHHHHHHHHH------HHHHH-cCCccccCHHHHHH---H-- Q lcl|Aclame:pro 359 DFCDKLIELKIID-AV---AKKAVIWDDLNEQTGTEKLTNAKTMGEIN------QTMLG-SGDNPAFSREEIRT---A-- 422 (449) Q Consensus 359 ~~l~~l~~~~~~~-~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a~------~~~~~-~g~~~~~~~~e~r~---~-- 422 (449) +++..++...-+. .+ .++.+.|.+-...|..+.|+...|.+++. .++.. .|.... ..+|+++ + T Consensus 374 ~~~~l~~~~~~~~~~~~~~~~i~v~f~~~~~~s~~~~ada~~kl~~~g~~~~s~et~~~~l~~~~d-~~~~~~~~~~~~~ 452 (488) T protein:vir:23 374 QAMRLAYKMVKGGDIPTEYYRMETVWRDPSTPTYAAKADAAAKLFANGAGLIPRERGWVDMGYTIV-EREQMRQWLEQDQ 452 (488) T ss_pred HHHHHHHHHhcCCCcchhhccceEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHHhCCCCch-HHHHHHHHHHHHH Confidence 5555444332221 12 36889999999999999998877765542 11222 121110 0122221 1 Q ss_pred ----hcC------CCCCCCCCCCCCcchhhcccccCC Q lcl|Aclame:pro 423 ----AGY------DNDDEEPLGEEDGDEEDKATDSAA 449 (449) Q Consensus 423 ----~~~------~~~~~~~~~~~~~~ee~~~~~~~a 449 (449) ..+ ....+.+. +.+..+.....+++| T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~a 488 (488) T protein:vir:23 453 KQGLGLIGSLYGASTPEGKPG-EAPVGEPPAPEPDAA 488 (488) T ss_pred HHHHHHHHHHhccCCCcccCC-CCCCCCCCCCCCCCC Confidence 000 00111111 111111222222222 No 169 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=98.57 E-value=2.6e-07 Score=56.66 Aligned_cols=383 Identities=9% Similarity=0.017 Sum_probs=158.0 Q ss_pred hHHHHHHHHHHHHHHHHhhcCcccccchhccCCc--ccCCH----------HHH-HHHHHcCchhHHHHhhhHHHHhcCC Q lcl|Aclame:pro 13 LNDARMARARMGLMVPTMGLDNKRHSAWCEYGFP--ELVTY----------ENL-YSLYRRGGIAHGAVEKLVGKCWQTN 79 (449) Q Consensus 13 ~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~--~~~~~----------~~l-~~~Y~~~~l~r~iVd~pa~d~~r~~ 79 (449) ++.-- ... |..-... -..|-.....++.. ..+.. ..- .+..-.+.+++.||+..+.=++-++ T Consensus 1 l~~~~-i~~---~i~~~~~-~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p 75 (451) T protein:vir:10 1 MELEK-IRA---IISADAA-RRQEILQAKSYYYNKNDILKKGVVVQNRDENPLRNADNRISHNFHEILVDEKASYMFTYP 75 (451) T ss_pred CCHHH-HHH---HHHHHHH-HHHHHHHHHHHhcccCccccccccccccccccccccccccccchHHHHHHhhhhheeccc Confidence 22111 111 1110000 00000000111110 00000 000 0112236899999999999999999 Q ss_pred cEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEeccccC Q lcl|Aclame:pro 80 PEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSL 159 (449) Q Consensus 80 ~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i 159 (449) +++...++.+.. ..++.+...++..+..+..+.+..||.|+.++.++.......|.... ..+.++++.++ T Consensus 76 ~~~~~~~~~~~~-------~~~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~~---~~~~~i~p~~~ 145 (451) T protein:vir:10 76 VLFDIDNNKELN-------EKVTDVLGNEFTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQT---FKYGVVNTEEI 145 (451) T ss_pred ceeecCCcHHHH-------HHHHHHhccCHHHHHHHHHHHHhhcCeEEEEEeecCCcccccccccc---eeEEEEcccce Confidence 887654433222 22333333455666777778888999999999986432222221111 11111111111 Q ss_pred Chh-------------hhh--c-ccccc---------ccCCc-eeEEeeecccCCCccce----EEccce---eeeccCC Q lcl|Aclame:pro 160 KVA-------------EWD--T-GINSK---------TYGQP-KLWKYTERLPNGSSRRV----DIHPDR---VFILGDY 206 (449) Q Consensus 160 ~~~-------------~~~--~-Dp~s~---------~yg~P-~~y~i~~~~~~~~~~~~----~IH~SR---li~~~~~ 206 (449) .+- .+. . |.... .++.+ ..|.......+..+... .-|.=- |+.|.+ T Consensus 146 ~~vydd~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n- 224 (451) T protein:vir:10 146 IPIYRNGIERELEAVIRYYIQLEDVKGQIQKQAYTYVEFWTDKILDKYKFFGVSCCGSQIEHITVQHRFNSVPFVEFSN- 224 (451) T ss_pred EEEEcCCCCCceEEEEEEEEeeecccccccceEEEEEEEEeCCeEEEEEecccCccccccccccccCCCCeeeEEEecc- Confidence 110 000 0 00000 00011 11111100000000000 012111 122222 Q ss_pred CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccccee Q lcl|Aclame:pro 207 SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLM 286 (449) Q Consensus 207 ~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 286 (449) ...|.|.++.+-.-+..++.+....+..+-..+...+.+ .+ ..+....+.... +... +.+. T Consensus 225 n~~~~~d~e~v~~liDa~~~~~S~~~~~~~~~~~~~l~~--------~g---~~~~~~~~~~~~-------~~~~-~~i~ 285 (451) T protein:vir:10 225 NIKKQSDLSKYKKILDLYDRVMSGFANDLEDIQQIIYIL--------EN---FGGEDTSEFLKE-------LKRY-KTIK 285 (451) T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhccceeee--------ec---CCcccchhhHHH-------HhhC-CeEE Confidence 234677787777766666666544444332211111111 11 111111111111 1111 1111 Q ss_pred ec-----CCC--ceEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHHHH----HHHHHHHHhhh Q lcl|Aclame:pro 287 TT-----QGA--TVTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFN----ARCQSRRVDLS 354 (449) Q Consensus 287 ~~-----~~e--d~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyy----d~I~~~Qe~~~ 354 (449) +. .+. +|-..+.+..+....++.+.+.|...+++|-. .....| |++| =++.-| ..+..+|..+. T Consensus 286 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~---~~~~~g-n~Sg~Alk~~~~~l~~k~~~k~~~f~ 361 (451) T protein:vir:10 286 TETDSEGDSGGLKTMQIEIPTEARKIILEILKKQIYESGQGLQQ---DTENFG-NASGVALKFFYRKLELKSGLLETEFR 361 (451) T ss_pred ecCcCCccCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCcccc---cccccc-cccHHHHHHHHHHHHHHHHHHHHHHH Confidence 11 112 34455667789999999999999999999953 222223 3444 343322 23333333444 Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCC Q lcl|Aclame:pro 355 FEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLG 434 (449) Q Consensus 355 ~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~ 434 (449) +.+.+++..+........+.++.+.|++-..-+++|.|++..+.+. .++.+.+....+.-. ++.. T Consensus 362 ~~l~~~~~li~~~~~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl~g------------~iS~et~~~~~p~v~---d~~~ 426 (451) T protein:vir:10 362 TSFDKLIKAILYFLGVTDYKKIQQTYTRNMMSNDLEDADIATKSVG------------IIPTKIILRHHPWVD---DVEE 426 (451) T ss_pred HHHHHHHHHHHHHhCCCCccceeEEecCCCCCCHHHHHHHHHHHhc------------cCchHHHHHhCCCCC---CHHH Confidence 4454444433332222235689999999999999998887766432 334443333332110 0000 Q ss_pred CCC--cchhhcccccCC Q lcl|Aclame:pro 435 EED--GDEEDKATDSAA 449 (449) Q Consensus 435 ~~~--~~ee~~~~~~~a 449 (449) ++. .++++...+..+ T Consensus 427 e~~~~~ee~~~~~~~~~ 443 (451) T protein:vir:10 427 AEKLYLEEKKIQASKVS 443 (451) T ss_pred HHHHHHHHHHHHHHHHH Confidence 000 000000000000 No 170 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=98.55 E-value=3e-07 Score=56.36 Aligned_cols=412 Identities=11% Similarity=-0.008 Sum_probs=166.1 Q ss_pred Cchh-hHHHHHhhh-H-HHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhc Q lcl|Aclame:pro 1 MTDK-LTLAVNHAL-N-DARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQ 77 (449) Q Consensus 1 ~~~~-~~~~v~~~~-~-~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r 77 (449) ++-+ |.-.+++-. . ..+..+ ...+..+....-..+...... +.+. .--...+++.||+..+.=++. T Consensus 40 ~~~~~i~~~i~~~~~~~~~r~~~-l~~Yy~g~~~il~~~~~~~~~-~~~~---------~ki~~n~~k~Iv~~~~~yl~g 108 (511) T protein:vir:96 40 QNVNEVSKYIEHHMDYQRPRLKV-LSDYYEGKTKNLVELTRRKEE-YMAD---------NRVAHDYASYISDFINGYFLG 108 (511) T ss_pred cCHHHHHHHHHHHHHhhhHHHHH-HHHHhhccCccccccCccccc-ccCc---------ceeecchHHHHHHHHhhhhcc Confidence 2211 221222111 0 001111 111211110000000000000 0000 112357899999999999999 Q ss_pred CCcEEecCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccC--------- Q lcl|Aclame:pro 78 TNPEIIEGDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGR--------- 146 (449) Q Consensus 78 ~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~--------- 146 (449) +++++..+++... ..++++... ++.....++.+....||.|++++..+ +|..-...+++.. T Consensus 109 ~p~~~~~~d~~~~--------~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~~i~~~~p~~~~~v~dd~~ 180 (511) T protein:vir:96 109 NPIQYQDDDKDVL--------EAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFIIYDNTV 180 (511) T ss_pred cCceeecCchHHH--------HHHHHHHhhcChhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEcccceEEEEcCCC Confidence 9999865543221 122222222 45556677777888999999999885 3332222222211 Q ss_pred --c-eeeEEEeccccCChhhhhcc-ccccccCCce-eEEeeecccCCC-c----cceEEccce---eeeccCCCCCcchh Q lcl|Aclame:pro 147 --G-LQKVSVSWAGSLKVAEWDTG-INSKTYGQPK-LWKYTERLPNGS-S----RRVDIHPDR---VFILGDYSEDAIGF 213 (449) Q Consensus 147 --~-l~~i~v~~~~~i~~~~~~~D-p~s~~yg~P~-~y~i~~~~~~~~-~----~~~~IH~SR---li~~~~~~~~G~s~ 213 (449) . +..++ +|..... .....+ .....++.|. .|+......++. . ....-|+-- ++.|.+ ...|.|. T Consensus 181 ~~~~~~~vr-~~~~~~~-~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-~~~g~gd 257 (511) T protein:vir:96 181 ERNSIAGVR-YLRTKPI-DKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSN-NERRKGD 257 (511) T ss_pred CCceEEEEE-EEEeeec-cccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecC-CCCCCCc Confidence 1 11111 1211000 000000 0001111221 122211100000 0 011123332 233322 3458888 Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecC Q lcl|Aclame:pro 214 LEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQ 289 (449) Q Consensus 214 l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~ 289 (449) ++.+..-+..++.+....+..+...+...+.+.-. .....++........+-...... +..-... T Consensus 258 ~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (511) T protein:vir:96 258 YEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGN-----------LNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEG 326 (511) T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecC-----------ccCCchhhcccccccceeccccceeccccccCCC Confidence 98888777777777665555443332222222110 00000111000000000000000 0011112 Q ss_pred CCc--eEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH----HHHHHHHHHHhhhHHHHHHHHH Q lcl|Aclame:pro 290 GAT--VTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY----FNARCQSRRVDLSFEIEDFCDK 363 (449) Q Consensus 290 ~ed--~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n----yyd~I~~~Qe~~~~p~~~~l~~ 363 (449) +-+ |-..+.+.+++...++.+.+.|...+++|-. -+++. +|+.|+.-++. -...+..+|..+...+.+++.. T Consensus 327 ~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~-~~~~~-~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l 404 (511) T protein:vir:96 327 SVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNM-KDDNF-SGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKL 404 (511) T ss_pred CcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccc-ccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 223 4445566789999999999999999999964 33332 23333222332 2333444443344444444433 Q ss_pred HHHH-h-cC--CCC---CCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccC-H-HHHHHHh----------- Q lcl|Aclame:pro 364 LIEL-K-II--DAV---AKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFS-R-EEIRTAA----------- 423 (449) Q Consensus 364 l~~~-~-~~--~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~-~-~e~r~~~----------- 423 (449) ++.. + .+ ..+ .++++.|+|-...+++|.|++..+.+..++.-......+-++ + +|+.... T Consensus 405 i~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~G~iS~et~l~~l~~v~d~~~El~ri~~E~~~~~~~~~ 484 (511) T protein:vir:96 405 LETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQ 484 (511) T ss_pred HHHHHHhcCCCccccccccceEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh Confidence 3222 1 11 112 368999999999999999998877665433321111223222 2 3433110 Q ss_pred ---cCCCCCCCCCCCCCcchhhcccccC Q lcl|Aclame:pro 424 ---GYDNDDEEPLGEEDGDEEDKATDSA 448 (449) Q Consensus 424 ---~~~~~~~~~~~~~~~~ee~~~~~~~ 448 (449) +.++.+. ...+.+++++....+.. T Consensus 485 ~~~~~~~~~~-~~~~~~~~~~~~~~e~~ 511 (511) T protein:vir:96 485 KGIYKDPRDI-NDDEQDDDTKDTVDKKE 511 (511) T ss_pred hccccCCCCC-CCCCCCCCccCcccccC Confidence 0111110 00111111000000000 No 171 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=98.55 E-value=3e-07 Score=56.36 Aligned_cols=412 Identities=11% Similarity=-0.008 Sum_probs=166.1 Q ss_pred Cchh-hHHHHHhhh-H-HHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhc Q lcl|Aclame:pro 1 MTDK-LTLAVNHAL-N-DARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQ 77 (449) Q Consensus 1 ~~~~-~~~~v~~~~-~-~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r 77 (449) ++-+ |.-.+++-. . ..+..+ ...+..+....-..+...... +.+. .--...+++.||+..+.=++. T Consensus 40 ~~~~~i~~~i~~~~~~~~~r~~~-l~~Yy~g~~~il~~~~~~~~~-~~~~---------~ki~~n~~k~Iv~~~~~yl~g 108 (511) T protein:vir:78 40 QNVNEVSKYIEHHMDYQRPRLKV-LSDYYEGKTKNLVELTRRKEE-YMAD---------NRVAHDYASYISDFINGYFLG 108 (511) T ss_pred cCHHHHHHHHHHHHHhhhHHHHH-HHHHhhccCccccccCccccc-ccCc---------ceeecchHHHHHHHHhhhhcc Confidence 2211 221222111 0 001111 111211110000000000000 0000 112357899999999999999 Q ss_pred CCcEEecCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccC--------- Q lcl|Aclame:pro 78 TNPEIIEGDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGR--------- 146 (449) Q Consensus 78 ~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~--------- 146 (449) +++++..+++... ..++++... ++.....++.+....||.|++++..+ +|..-...+++.. T Consensus 109 ~p~~~~~~d~~~~--------~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~~i~~~~p~~~~~v~dd~~ 180 (511) T protein:vir:78 109 NPIQYQDDDKDVL--------EAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFIIYDNTV 180 (511) T ss_pred cCceeecCchHHH--------HHHHHHHhhcChhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEcccceEEEEcCCC Confidence 9999865543221 122222222 45556677777888999999999885 3332222222211 Q ss_pred --c-eeeEEEeccccCChhhhhcc-ccccccCCce-eEEeeecccCCC-c----cceEEccce---eeeccCCCCCcchh Q lcl|Aclame:pro 147 --G-LQKVSVSWAGSLKVAEWDTG-INSKTYGQPK-LWKYTERLPNGS-S----RRVDIHPDR---VFILGDYSEDAIGF 213 (449) Q Consensus 147 --~-l~~i~v~~~~~i~~~~~~~D-p~s~~yg~P~-~y~i~~~~~~~~-~----~~~~IH~SR---li~~~~~~~~G~s~ 213 (449) . +..++ +|..... .....+ .....++.|. .|+......++. . ....-|+-- ++.|.+ ...|.|. T Consensus 181 ~~~~~~~vr-~~~~~~~-~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-~~~g~gd 257 (511) T protein:vir:78 181 ERNSIAGVR-YLRTKPI-DKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSN-NERRKGD 257 (511) T ss_pred CCceEEEEE-EEEeeec-cccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecC-CCCCCCc Confidence 1 11111 1211000 000000 0001111221 122211100000 0 011123332 233322 3458888 Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc----cceeecC Q lcl|Aclame:pro 214 LEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN----DVLMTTQ 289 (449) Q Consensus 214 l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~ 289 (449) ++.+..-+..++.+....+..+...+...+.+.-. .....++........+-...... +..-... T Consensus 258 ~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (511) T protein:vir:78 258 YEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGN-----------LNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEG 326 (511) T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecC-----------ccCCchhhcccccccceeccccceeccccccCCC Confidence 98888777777777665555443332222222110 00000111000000000000000 0011112 Q ss_pred CCc--eEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH----HHHHHHHHHHhhhHHHHHHHHH Q lcl|Aclame:pro 290 GAT--VTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY----FNARCQSRRVDLSFEIEDFCDK 363 (449) Q Consensus 290 ~ed--~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n----yyd~I~~~Qe~~~~p~~~~l~~ 363 (449) +-+ |-..+.+.+++...++.+.+.|...+++|-. -+++. +|+.|+.-++. -...+..+|..+...+.+++.. T Consensus 327 ~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~-~~~~~-~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l 404 (511) T protein:vir:78 327 SVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNM-KDDNF-SGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKL 404 (511) T ss_pred CcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccc-ccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 223 4445566789999999999999999999964 33332 23333222332 2333444443344444444433 Q ss_pred HHHH-h-cC--CCC---CCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccC-H-HHHHHHh----------- Q lcl|Aclame:pro 364 LIEL-K-II--DAV---AKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFS-R-EEIRTAA----------- 423 (449) Q Consensus 364 l~~~-~-~~--~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~-~-~e~r~~~----------- 423 (449) ++.. + .+ ..+ .++++.|+|-...+++|.|++..+.+..++.-......+-++ + +|+.... T Consensus 405 i~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~G~iS~et~l~~l~~v~d~~~El~ri~~E~~~~~~~~~ 484 (511) T protein:vir:78 405 LETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQ 484 (511) T ss_pred HHHHHHhcCCCccccccccceEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh Confidence 3222 1 11 112 368999999999999999998877665433321111223222 2 3433110 Q ss_pred ---cCCCCCCCCCCCCCcchhhcccccC Q lcl|Aclame:pro 424 ---GYDNDDEEPLGEEDGDEEDKATDSA 448 (449) Q Consensus 424 ---~~~~~~~~~~~~~~~~ee~~~~~~~ 448 (449) +.++.+. ...+.+++++....+.. T Consensus 485 ~~~~~~~~~~-~~~~~~~~~~~~~~e~~ 511 (511) T protein:vir:78 485 KGIYKDPRDI-NDDEQDDDTKDTVDKKE 511 (511) T ss_pred hccccCCCCC-CCCCCCCCccCcccccC Confidence 0111110 00111111000000000 No 172 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=98.55 E-value=3e-07 Score=56.34 Aligned_cols=414 Identities=11% Similarity=-0.016 Sum_probs=167.0 Q ss_pred Cc--hh--------hHHHHHhhhH--HHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHH Q lcl|Aclame:pro 1 MT--DK--------LTLAVNHALN--DARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAV 68 (449) Q Consensus 1 ~~--~~--------~~~~v~~~~~--~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iV 68 (449) |+ ++ +.-.+++-.. ..+... ...+..+.-..-.......... .+ ..--...+++.|| T Consensus 31 ~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~-l~~Yy~g~~~il~~~~~~~~~~-~~---------~~ki~~n~~k~Iv 99 (511) T protein:vir:93 31 YDGTESDLLQNVNEVSKYIEHHMDYQRPRLKV-LSDYYEGKTKNLVELTRRKEEY-MA---------DNRVAHDYASYIS 99 (511) T ss_pred ccchhhhhhccHHHHHHHHHHHHHhhHHHHHH-HHHHhcccCccccccCcCcccc-cC---------cceeecchHHHHH Confidence 22 12 2211221100 001000 1111111100000000000000 00 0012357999999 Q ss_pred hhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccC Q lcl|Aclame:pro 69 EKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGR 146 (449) Q Consensus 69 d~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~ 146 (449) +..+.=++-+++++..+++.. . +.++++... ++..+..+..+....||.|++++..+ +|......+++.. T Consensus 100 ~~~~~yl~g~p~~~~~~d~~~----~----~~l~~~~~~n~~~~~~~~~~~~~~~~G~ay~~vy~de~~~~~i~~~~p~~ 171 (511) T protein:vir:93 100 DFINGYFLGNPIQYQDDDKDV----L----EVIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMS 171 (511) T ss_pred HHHhhhhcccCeeeccCChHH----H----HHHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccce Confidence 999999999999986544321 1 122332222 46667778888889999999999885 3332222222221 Q ss_pred c-----------eeeEEEeccccCChhhhhccccccccCCc-eeEEeeecccC-CCcc----ceEEccce---eeeccCC Q lcl|Aclame:pro 147 G-----------LQKVSVSWAGSLKVAEWDTGINSKTYGQP-KLWKYTERLPN-GSSR----RVDIHPDR---VFILGDY 206 (449) Q Consensus 147 ~-----------l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P-~~y~i~~~~~~-~~~~----~~~IH~SR---li~~~~~ 206 (449) . +.....+|.....-..-...+....++.| ..|+......+ .... ...-|.-- ++.|.+ T Consensus 172 ~~~vydd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n- 250 (511) T protein:vir:93 172 TFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSN- 250 (511) T ss_pred eEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccccccccccccccCCCccceEEecC- Confidence 1 11111111100000000000000111111 11222111100 0000 01123211 233322 Q ss_pred CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcc----c Q lcl|Aclame:pro 207 SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRG----N 282 (449) Q Consensus 207 ~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~ 282 (449) ...|.|.++.+..-+..++.+....+..+...+...+.+. +. ......+........+-.+... . T Consensus 251 n~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~--------G~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (511) T protein:vir:93 251 NERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIK--------GN---LNLDPVEVRKQKEANVLFLEPTVYADS 319 (511) T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCcceeee--------cC---cccCchhhcccccccceeccccccccc Confidence 3468888998888787788776666655433332222221 00 0011111111000000000000 0 Q ss_pred cceeecCCCce--EEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH-H---HHHHHHHHHhhhHH Q lcl|Aclame:pro 283 DVLMTTQGATV--TPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY-F---NARCQSRRVDLSFE 356 (449) Q Consensus 283 ~~~l~~~~ed~--~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n-y---yd~I~~~Qe~~~~p 356 (449) ...-.+.+.++ -..+.+.+++...++.+.+.|...+++|-.- ++.. +|+.|+.-++- | ...++.+|..+... T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~P~~~-~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~ 397 (511) T protein:vir:93 320 EGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMK-DDNF-SGTQSGEAMKYKLFGLEQRTKTKEGLFTKG 397 (511) T ss_pred ccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccc-cccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 01111223344 4455667899999999999999999999642 2222 23333322332 2 33344444334444 Q ss_pred HHHHHHHHHHH-hc---CCCC---CCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccC-H-HHHHHH----- Q lcl|Aclame:pro 357 IEDFCDKLIEL-KI---IDAV---AKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFS-R-EEIRTA----- 422 (449) Q Consensus 357 ~~~~l~~l~~~-~~---~~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~-~-~e~r~~----- 422 (449) +.+++..++.. +. +..+ .++++.|+|-...+.+|.|++..+.+..++.-......+-++ + +|+... T Consensus 398 l~~~~~li~~~l~~~~~~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl~g~iS~et~~~~l~~v~d~~~E~~ri~~E~~ 477 (511) T protein:vir:93 398 LRRRAKLLETILKNTWSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDPELEVKKIEEDEK 477 (511) T ss_pred HHHHHHHHHHHHHhccCcccccccccceEEeCCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHH Confidence 44444333322 21 1112 257999999999999999998877655433321111222222 2 343211 Q ss_pred --hc-------CCCCCCCCCCCCCcchhhcccccC Q lcl|Aclame:pro 423 --AG-------YDNDDEEPLGEEDGDEEDKATDSA 448 (449) Q Consensus 423 --~~-------~~~~~~~~~~~~~~~ee~~~~~~~ 448 (449) .. ..+... ..++.+++++..+-+.. T Consensus 478 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:93 478 ESIKKAQKGIYKDPRDI-NDDEQDDDTKDTVDKKE 511 (511) T ss_pred HHHHHHhhhcccCCCCC-CCCCCCCcccccccccC Confidence 00 011110 00000011000000000 No 173 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=98.54 E-value=3.3e-07 Score=56.14 Aligned_cols=412 Identities=11% Similarity=-0.020 Sum_probs=165.4 Q ss_pred Cc-hhhHHHHHhhh--HHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhc Q lcl|Aclame:pro 1 MT-DKLTLAVNHAL--NDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQ 77 (449) Q Consensus 1 ~~-~~~~~~v~~~~--~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r 77 (449) .+ +.+.--++.-. +..+... -..+..+....-. +...... +.+. . . -..++++.||+..+.=++- T Consensus 15 ~~~~~~~~~i~~~~~~~~~r~~~-~~~yy~g~~~i~~-~~~~~~~-~~~~----~---k--i~~n~~~~iv~~~~~~l~g 82 (489) T protein:vir:99 15 LWIDQLKNYISRFKAEQLERLKE-LKRYYLGDNNIKY-RPAKTDK-YAAD----N---R--IASDFAKYITVFEQGYMLG 82 (489) T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHhcccCcccc-ccccccc-cCCc----c---e--eecchHHHHHHHHhhhhcc Confidence 22 22332333211 1111111 1112221111110 0000000 0000 0 1 1468999999999999999 Q ss_pred CCcEEecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEecCCCc-----ccccccccC----- Q lcl|Aclame:pro 78 TNPEIIEGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIRDEKD-----WNLPATKGR----- 146 (449) Q Consensus 78 ~~~~i~~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~-----~~~Pl~~~~----- 146 (449) +++++...++..+ ..++++.. .++.....+..+.+..||.|++++.+..+.+ .-..+++.. T Consensus 83 ~~~~~~~~d~~~~--------~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~~~~i~~~~p~~~~~v~ 154 (489) T protein:vir:99 83 VPVEYKNENKDLQ--------AAIDLMSVRNNEDYHNVKIKTDLSIYGRAYELLTVEKIDDKKTEVKLYQLPAEQTFVIY 154 (489) T ss_pred CCceeecCChhHH--------HHHHHHHhhcChhHHHHHHHHHHhhCCeEEEEEeeccCcCCCcceEEEEEcccceEEEE Confidence 9998865443221 12222222 2455566778888889999998887632111 111111111 Q ss_pred ------ceeeEEEeccccCChhhhhccccccccCCc-eeEEeeecccCCCc---cceEEcc-ce--eeeccCCCCCcchh Q lcl|Aclame:pro 147 ------GLQKVSVSWAGSLKVAEWDTGINSKTYGQP-KLWKYTERLPNGSS---RRVDIHP-DR--VFILGDYSEDAIGF 213 (449) Q Consensus 147 ------~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P-~~y~i~~~~~~~~~---~~~~IH~-SR--li~~~~~~~~G~s~ 213 (449) .+.....+|........ ...-..++.| ..|++.....+... ....-|. .+ |++|.+ ...|.|. T Consensus 155 dd~~~~~~~~~i~~~~~~~~~~~---~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-~~~~~s~ 230 (489) T protein:vir:99 155 DDTYQRNSLMAVHFYDIDYGSGK---RKQIIKAYTSDTIYTYEDYNLETKGMRLKDYEGHFFKGVPVNEYAN-NEERTGA 230 (489) T ss_pred cCCCCCceEEEEEEEEEecCCCc---eEEEEEEEeCCcEEEEEecCCCcccceecccccccCCceeEEEeec-CCCCCCc Confidence 01111111110000000 0000111112 11222111000000 0011132 22 233332 2457788 Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHH-H-----HHHHhccccceee Q lcl|Aclame:pro 214 LEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNE-V-----AGEINRGNDVLMT 287 (449) Q Consensus 214 l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~l~ 287 (449) ++.+..-+..++.+....+..+...+...+.+.- .. +.. ....+....... . ............+ T Consensus 231 ~~~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~g-----~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (489) T protein:vir:99 231 YESVLDNIDAYDLSQSELANFQQDSVNALLVIAG-----NA-YTG---ADENDYLDDGRLNPNGRLAISIGFKKAQVLIL 301 (489) T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----CC-ccc---ccchhhhhhcccccccccccccccccceeeee Confidence 8887777777777655555444322222222210 00 000 000000000000 0 0000000001111 Q ss_pred cC-------CC--ceEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHH----HHHHHHHHHHHhhh Q lcl|Aclame:pro 288 TQ-------GA--TVTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQK----YFNARCQSRRVDLS 354 (449) Q Consensus 288 ~~-------~e--d~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~----nyyd~I~~~Qe~~~ 354 (449) .. +. +|-.+..+.+++...++.+.+.|...+++|-.-. ...+|+.|+.-++ .-...+..+|..+. T Consensus 302 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~--~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~ 379 (489) T protein:vir:99 302 DDNPNPNGVKPQAYFLKKEYDTAGSEAYKNRLVADILRFTFTPDTQD--MKFSGVQSGESMKYKLMASDNYREKQERLFK 379 (489) T ss_pred ccccCccccccceeeeeecCChHHHHHHHHHHHHHHHHHhCCccccc--ccccccchHHHHHHHHHHHHHHHHHHHHHHH Confidence 11 11 3445566777899999999999999999995322 2223333332333 23444455554444 Q ss_pred HHHHHHHHHHHHH-hc--CCC-----CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccC---H-HHHHH- Q lcl|Aclame:pro 355 FEIEDFCDKLIEL-KI--IDA-----VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFS---R-EEIRT- 421 (449) Q Consensus 355 ~p~~~~l~~l~~~-~~--~~~-----~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~---~-~e~r~- 421 (449) ..+.+++..++.. +. +.. ..++++.|++=...+..+.|++..+.+.....-......+-++ + +|+.. T Consensus 380 ~~l~~~~~li~~~~~~~~~~~~~~~~~~~i~v~f~~~~p~d~~~~~~~~~kl~giis~et~~~~l~~v~~~d~~~E~~ri 459 (489) T protein:vir:99 380 KGLMRRLRLAANIWAIKGNEATTYSLVNDTSIVFTPNLPQNDNEIVTAAQNLYGIVSDQTIFEILNTVTGVDAEAELKRL 459 (489) T ss_pred HHHHHHHHHHHHHHhhcCCccccccccccceEEeCCCCCcCHHHHHHHHHHHhccCCHHHHHHhcCCCCchhHHHHHHHH Confidence 4444444333222 11 111 1368999999999999999998776543322211111122232 1 23321 Q ss_pred --Hh--cCCCCCCCCCCCCCcchhhccccc Q lcl|Aclame:pro 422 --AA--GYDNDDEEPLGEEDGDEEDKATDS 447 (449) Q Consensus 422 --~~--~~~~~~~~~~~~~~~~ee~~~~~~ 447 (449) +. .....+.....+..++++..+.++ T Consensus 460 ~~E~~~~~~~~~~~~~~~~~~~~~~~~~~p 489 (489) T protein:vir:99 460 KEEADKKQSLPEPRLVGDASGQEEPTAEKP 489 (489) T ss_pred HHHHHHHhccccccccCCCCCCcCCCCCCC Confidence 11 111111112222222333222223 No 174 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=98.53 E-value=3.6e-07 Score=55.91 Aligned_cols=386 Identities=11% Similarity=-0.012 Sum_probs=168.2 Q ss_pred HHhhhHHHHHH---HHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCCcEEecC Q lcl|Aclame:pro 9 VNHALNDARMA---RARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEG 85 (449) Q Consensus 9 v~~~~~~~~~~---~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~~~i~~~ 85 (449) |+...-...+. ..++-+....+|+-+.++..-..- ..-+...+..|.+ +.-...++.+.-.-.+...|+|..+ T Consensus 1 v~~~~l~~e~at~~~~~d~~~~~~~~l~~~~~~il~~a---~~g~~~~y~~l~~-D~~i~s~l~~rk~av~~~~w~i~p~ 76 (488) T protein:vir:99 1 MEKPALGREIATSGDGRDITRPFISGLQVPNDSILQRR---GGNDLRVYEEILS-DAQVKTVWGQRQLAVVSREWKVEAG 76 (488) T ss_pred CCccchhHHHHHHHhhhhhhccccCCCCCCChHHHHhh---ccCCHHHHHHHhh-ChHHHHHHHHHHHHHhcCCceEEcC Confidence 33322111111 122222222223222222211111 1112344455554 6677788888888888888888755 Q ss_pred CChhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCceeeEEEeccccCChhh Q lcl|Aclame:pro 86 DDADD-SEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRGLQKVSVSWAGSLKVAE 163 (449) Q Consensus 86 ~~~~~-~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~ 163 (449) .+... .+....+++.++.+ . |..+...+-.+.+||+|++=+.-. ++..+ .+..|.+..+..+. T Consensus 77 ~~~~~~~~~ae~v~~~l~~~---~-~~~~l~~~lda~~~G~s~~Ei~w~~~~g~~--------~~~~l~~r~~~~f~--- 141 (488) T protein:vir:99 77 GDRPIDQAAAEHLEQQLQRV---G-WDRVTSKMLFGVFYGYAVSELIYGRDDRYI--------TLEAIKVRNRRRFR--- 141 (488) T ss_pred CCChHHHHHHHHHHHHHhCC---C-HHHHHHHHHhhhhhcceeEEEEEeecCCee--------eEeeeeeeccccee--- Confidence 43222 22222232223222 3 344444444678899999876552 22111 12222222211111 Q ss_pred hhccccccccCCceeEEeeecccCCCccceEEc-c-ceeeec---cCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHH Q lcl|Aclame:pro 164 WDTGINSKTYGQPKLWKYTERLPNGSSRRVDIH-P-DRVFIL---GDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKN 238 (449) Q Consensus 164 ~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH-~-SRli~~---~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~ 238 (449) .|+. +..... . .++...+..++ + -.+++. ..+..+|.++++.||....--.....-++.-+-+. T Consensus 142 --~d~~----~~l~~~-~----~~~~~~g~~lp~~~~~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~y 210 (488) T protein:vir:99 142 --YDQD----GGLRLL-T----PNNMFEGEPCPAPYFWHFSTGADNDDEPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKF 210 (488) T ss_pred --ecCC----CceEEe-c----cCCCCCccccccCceEEEEeecCCCCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHc Confidence 1111 111110 0 01111122221 1 111111 23567799999999986543333322222222111 Q ss_pred HhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeecccCCh---HHHHHHHHHHHH Q lcl|Aclame:pro 239 AARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSVADP---TATYNVNLQTAA 315 (449) Q Consensus 239 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~lsgl---~d~~~~~~~~ia 315 (449) ..-....++. .....++..+.+.+.+..+.+. ..+++..+.+++.++..=+|. ..+++..-.+|| T Consensus 211 G~P~~igky~-----------~~~a~~~ek~~l~~av~~~~~~-~~~viP~~~~ie~~ea~~~~~~~~~~li~~~d~~Is 278 (488) T protein:vir:99 211 GMPTAVGRYD-----------DKTATPEDKAKLLAALHAIQTD-SAIIMPAGMQAELLEAGRSGTADYKTLHDTMDATIA 278 (488) T ss_pred CCceeeeecC-----------CCCCCHHHHHHHHHHHHHHhcC-cEEEecCCceeEEeecCCCChHHHHHHHHHHHHHHH Confidence 1111111100 0112234445555556555433 356677888899988754443 445666666776 Q ss_pred hh-hcCCceeeeccCccccccch--hHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhcCCCCCCceEEeCCCCCCCHHHH Q lcl|Aclame:pro 316 AG-VDIPTRILIGNQQAERSSTE--DQKYFNARCQSRRVDLSFEIED-FCDKLIELKIIDAVAKKAVIWDDLNEQTGTEK 391 (449) Q Consensus 316 aa-s~IP~t~L~Gqs~gg~~s~e--D~~nyyd~I~~~Qe~~~~p~~~-~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~ 391 (449) -+ .|=- |.++..+|..+.+ -....-+.+.+....+..-+.+ ++..|+...++... --.|.|.-.-..+- T Consensus 279 k~iLGqt---lts~~~~Gs~a~~~vh~~v~~d~~~aDa~~i~~tln~~li~~l~~~N~~~~~-~p~~~~~~~e~edl--- 351 (488) T protein:vir:99 279 KVGLGQV---ASTQGTPGRLGNDDLQADVRLDLVKADADLICESFNLGPARWLTEWNFPGAQ-PPRVYRVIEEPEDI--- 351 (488) T ss_pred HHHhhhh---hcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcC-CceeEecCCCcccH--- Confidence 44 1211 1122222222222 2345666666666555555654 55566666664321 12333432222222 Q ss_pred HHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCCCCCCCcchhhcccccCC Q lcl|Aclame:pro 392 LTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGEEDGDEEDKATDSAA 449 (449) Q Consensus 392 Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~~~~~~~~ee~~~~~~~a 449 (449) ++.|++++++++.+.. .++.+.+|+..+++.+.+.......... ...++..+ T Consensus 352 ----~~~a~~~~~l~~~~G~-~i~~~~i~e~~Gip~~~~~~~~~~~~~~-~~~~~~~~ 403 (488) T protein:vir:99 352 ----TAKAERDEKVFRMSGF-RPTRGYVQETYGVEVESTQAEATAPTPS-TEFAEGDQ 403 (488) T ss_pred ----HHHHHHHHHHHhhcCC-CCCHHHHHHHcCCCCcccccccccCCCc-ccCCCCCC Confidence 3457778888886222 3578999999998876432111000000 00000000 No 175 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=98.52 E-value=3.7e-07 Score=55.82 Aligned_cols=412 Identities=10% Similarity=-0.012 Sum_probs=167.9 Q ss_pred Cc-hhhHHHHHhhh-H-HHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhc Q lcl|Aclame:pro 1 MT-DKLTLAVNHAL-N-DARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQ 77 (449) Q Consensus 1 ~~-~~~~~~v~~~~-~-~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r 77 (449) |+ ++|.-.+++-. . ..+..+ -..+..+.-..- .+......-+.+ ..--...+++.||+..+.=++- T Consensus 40 ~~~~~i~~~i~~~~~~~~~r~~~-l~~Yy~g~~~i~-~~~~~~~~~~~~---------~~ki~~n~~k~Iv~~~~~yl~g 108 (511) T protein:vir:10 40 QNVNEVSKCIEHHMDYQRPRLKV-LSDYYEGKTKNL-VELTRRKEEYMA---------DNRVAHDYASYISDFINGYFLG 108 (511) T ss_pred cCHHHHHHHHHHHHHhhHHHHHH-HHHHhcccCccc-cccCcccccccC---------cceeecchHHHHHHHHhhhhcc Confidence 22 22322222111 0 011111 111211110000 000000000000 0112357899999999999999 Q ss_pred CCcEEecCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCc-------- Q lcl|Aclame:pro 78 TNPEIIEGDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRG-------- 147 (449) Q Consensus 78 ~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~-------- 147 (449) +++++..+++... ..+++++.. ++..+..++.+....||.|++++..+ ||......+++... T Consensus 109 ~p~~~~~~d~~~~--------~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~dedg~~~i~~~~p~~~~~vydd~~ 180 (511) T protein:vir:10 109 NPIQYQDDDKDVL--------EAIEAFNDLNDVESHNRSLGLDLSIYGKAYEIMIRNQDDETRLYKSDAMSTFVIYDNTI 180 (511) T ss_pred cCceeecCchHHH--------HHHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccceeEEEEcCCC Confidence 9999865543221 223333222 45566777778888999999999885 33322222222211 Q ss_pred ----eeeEEEeccccCChhhhhcc-ccccccCCc-eeEEeeecccCC-Ccc----ceEEcccee---eeccCCCCCcchh Q lcl|Aclame:pro 148 ----LQKVSVSWAGSLKVAEWDTG-INSKTYGQP-KLWKYTERLPNG-SSR----RVDIHPDRV---FILGDYSEDAIGF 213 (449) Q Consensus 148 ----l~~i~v~~~~~i~~~~~~~D-p~s~~yg~P-~~y~i~~~~~~~-~~~----~~~IH~SRl---i~~~~~~~~G~s~ 213 (449) +..++. |.....-. ...+ ..-..++-+ ..|+......+. ... ...-|+-.. +.|.. ...|.|. T Consensus 181 ~~~~~~~vr~-~~~~~~d~-~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~f~n-n~~g~gd 257 (511) T protein:vir:10 181 ERNSIAGVRY-LRTKPIDK-TDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSN-NERRKGD 257 (511) T ss_pred CCceEEEEEE-EEeeeccc-CccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcceeEEEecC-CCCCCCc Confidence 111111 11100000 0000 000011111 122221111000 000 112233332 23332 3468888 Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhc----cccceeecC Q lcl|Aclame:pro 214 LEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINR----GNDVLMTTQ 289 (449) Q Consensus 214 l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~ 289 (449) ++.+..-+..++.+....+..+...+...+.+. +. .....++........+-.+.. ..+....+. T Consensus 258 ~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~--------g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (511) T protein:vir:10 258 YEKVITLIDLYDNAESDTANYMSDLNDAMLLIK--------GN---LNLDPVEVRKQKEANVLFLEPTVYADSEGRETEG 326 (511) T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhCceeeee--------cc---ccCCchhhccchhccceecccccccccccccCCC Confidence 998888887788776666655543332222221 10 001111111100000000000 111111122 Q ss_pred CCceE--EeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHHH----HHHHHHHHHHhhhHHHHHHHHH Q lcl|Aclame:pro 290 GATVT--PLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY----FNARCQSRRVDLSFEIEDFCDK 363 (449) Q Consensus 290 ~ed~~--~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~n----yyd~I~~~Qe~~~~p~~~~l~~ 363 (449) +-+++ +.+.+.++....++.+.+.|...+.+|-.- ++.- +|+.|+.-++. -...+..+|..+...+.+++.. T Consensus 327 ~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~-~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~l 404 (511) T protein:vir:10 327 SVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMK-DDNF-SGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKL 404 (511) T ss_pred CcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccc-cccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 33444 445667899999999999999999999742 2222 23333323332 2333333443343444444333 Q ss_pred HHHH-hc-C--CCC---CCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccC-H-HHHHHHh-----cC---- Q lcl|Aclame:pro 364 LIEL-KI-I--DAV---AKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFS-R-EEIRTAA-----GY---- 425 (449) Q Consensus 364 l~~~-~~-~--~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~-~-~e~r~~~-----~~---- 425 (449) +... +. + ..+ .++++.|+|-...+.++.+++..+.+..++.-......+-++ + +|+.... .+ T Consensus 405 i~~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~~~~~~~~kl~G~iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~ 484 (511) T protein:vir:10 405 LETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQ 484 (511) T ss_pred HHHHHHhhCCcccccccceeeEEeCCCCCcCHHHHHHHHHHHhccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh Confidence 2221 11 1 112 368999999999999999998877654332211111122222 2 3433110 00 Q ss_pred CCC--CC-CCCCCCCcch--hhccccc Q lcl|Aclame:pro 426 DND--DE-EPLGEEDGDE--EDKATDS 447 (449) Q Consensus 426 ~~~--~~-~~~~~~~~~e--e~~~~~~ 447 (449) .+. +. ...+++++++ +..+.+- T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:10 485 KGIYKDPRDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred hhcccCCCCCCCCCCCCcccCcccccC Confidence 000 00 0000111111 1111111 No 176 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=98.49 E-value=4.7e-07 Score=55.26 Aligned_cols=414 Identities=12% Similarity=-0.007 Sum_probs=167.8 Q ss_pred Cc--hh--------hHHHHHhhhHHHHHHHHHHH-HHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHh Q lcl|Aclame:pro 1 MT--DK--------LTLAVNHALNDARMARARMG-LMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVE 69 (449) Q Consensus 1 ~~--~~--------~~~~v~~~~~~~~~~~~~~~-~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd 69 (449) |+ ++ |+-.+++-.. .+ +.|.. +..--.|.. +-.......+. ..-...--...+++.||+ T Consensus 31 ~~~~e~~~~~~~~~i~~~i~~~~~-~~--~~r~~~l~~Yy~g~~---~i~~~~~~~~~----~~~~~~ki~~n~~k~Iv~ 100 (511) T protein:vir:96 31 YDGTESDLLQNVNEVSKYIEHHMD-YQ--RPRLKVLSDYYEGKT---KNLVELTRRKE----EYMADNRVAHDYASYISD 100 (511) T ss_pred cchhhhhhhccHHHHHHHHHHHHH-hh--HHHHHHHHHHhcccC---ccccccCcCcc----cccCcceeecchHHHHHH Confidence 21 12 2212221110 00 01111 110011110 00000000000 000000123578999999 Q ss_pred hhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCc Q lcl|Aclame:pro 70 KLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRG 147 (449) Q Consensus 70 ~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~ 147 (449) ..+.=++-+++++..+++... ..+++++.. ++.....++.+....||.|++++..+ ||..-...+++... T Consensus 101 ~~~~yl~g~p~~~~~~~~~~~--------~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~~i~~~~p~~~ 172 (511) T protein:vir:96 101 FINGYFLGNPIQYQDDDKDVL--------EAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMST 172 (511) T ss_pred HHHhhhccCCceeecCchHHH--------HHHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEcccee Confidence 999999999999865543221 223333332 56667778888888999999999885 33322222222211 Q ss_pred -----------eeeEEEeccccCChhhhhcc-ccccccCCc-eeEEeeecccCC-C----ccceEEccceeeeccC--CC Q lcl|Aclame:pro 148 -----------LQKVSVSWAGSLKVAEWDTG-INSKTYGQP-KLWKYTERLPNG-S----SRRVDIHPDRVFILGD--YS 207 (449) Q Consensus 148 -----------l~~i~v~~~~~i~~~~~~~D-p~s~~yg~P-~~y~i~~~~~~~-~----~~~~~IH~SRli~~~~--~~ 207 (449) +.....+|.....-. ...+ ..-..++.| ..|+......+. . .....-|+-..+.+.. +. T Consensus 173 ~~vydd~~~~~~~~~vr~~~~~~~d~-~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn 251 (511) T protein:vir:96 173 FVIYDNTIERNSIAGVRYLRTKPIDK-TDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNN 251 (511) T ss_pred EEEEcCCCCCceEEEEEEEEeeeccc-cccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCCceeeEEecCC Confidence 111111111000000 0000 000011111 112221111000 0 0011234333332222 23 Q ss_pred CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHH-H--HHH-Hhcccc Q lcl|Aclame:pro 208 EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNE-V--AGE-INRGND 283 (449) Q Consensus 208 ~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~ 283 (449) ..|.|.++.+..-+..++.+....+..+...+...+.+.-.. .....+....... + ... .....+ T Consensus 252 ~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (511) T protein:vir:96 252 ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNL-----------NLDPVEVRKQKEANVLFLEPTVYADSE 320 (511) T ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCc-----------cCCchhhcccccccceecccccccccc Confidence 468888998888888888876666655543332222221100 0001111100000 0 000 000111 Q ss_pred ceeecCCCceEE--eecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHH----HHHHHHHHHHHhhhHHH Q lcl|Aclame:pro 284 VLMTTQGATVTP--LVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQK----YFNARCQSRRVDLSFEI 357 (449) Q Consensus 284 ~~l~~~~ed~~~--~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~----nyyd~I~~~Qe~~~~p~ 357 (449) ....+.+-+++. .+.+.+++...++.+.+.|...+++|-.- ++.- +|+.|+.-++ .-...++.+|..+...+ T Consensus 321 ~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~-~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l 398 (511) T protein:vir:96 321 GRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMK-DDNF-SGTQSGEAMKYKLFGLEQRTKTKEGLFTKGL 398 (511) T ss_pred cccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccc-cccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 111122334444 45567799999999999999999999743 2222 2333322332 22333444443344444 Q ss_pred HHHHHHHHHH-hc---CCCC---CCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCcccc-CH-HHHHHH------ Q lcl|Aclame:pro 358 EDFCDKLIEL-KI---IDAV---AKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAF-SR-EEIRTA------ 422 (449) Q Consensus 358 ~~~l~~l~~~-~~---~~~~---~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~-~~-~e~r~~------ 422 (449) .+++..++.. +. +..+ .++++.|+|-...+.++.+++..+.+..++.-......+-+ ++ +|+... T Consensus 399 ~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl~G~iS~et~l~~l~~v~D~~~E~~ri~~E~~~ 478 (511) T protein:vir:96 399 RRRAKLLETILKNTWSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDPELEVKKIEEDEKE 478 (511) T ss_pred HHHHHHHHHHHHhhcCcccccccccceEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHH Confidence 4444333222 21 1112 36799999999999999999877654433221111112222 22 343311 Q ss_pred -h-------cCCCCCCCCCCCCCcc-hhhccccc Q lcl|Aclame:pro 423 -A-------GYDNDDEEPLGEEDGD-EEDKATDS 447 (449) Q Consensus 423 -~-------~~~~~~~~~~~~~~~~-ee~~~~~~ 447 (449) . ...+... ...+.+++ ++..+.+- T Consensus 479 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:96 479 SIKKAQKGIYKDPRDI-NDDEQDDDTKDTVDKKE 511 (511) T ss_pred HHHHHhhccccCCCCC-CCCCCCCcccccccccC Confidence 0 0011110 00000000 00000000 No 177 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=98.48 E-value=5e-07 Score=55.14 Aligned_cols=393 Identities=11% Similarity=-0.017 Sum_probs=167.4 Q ss_pred Cchhh-HHHHHh-hhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDKL-TLAVNH-ALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~~-~~~v~~-~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) |+.+. .-.++. ..+..+... ...+..+..-.-..+.+ ..+.+ -.. -...+++.||+..+.=++-+ T Consensus 17 ~~~~~i~~~i~~~~~~~~r~~~-~~~Yy~g~~~i~~~~~~---~~~~~-------~~k--i~~n~~~~ivd~~~~~l~g~ 83 (452) T protein:vir:36 17 ITVEVVTKFMEKHKLEVARYEY-LKNMYLGIMAIDDEPAK---DSWKP-------DNR--LAVNFTKYIVDTFTGYFNGI 83 (452) T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHhccccccccCccc---cccCc-------cce--eecchHHHHHHHHhhhhccc Confidence 55332 211221 111111111 11122211111101000 00000 011 23578999999999999999 Q ss_pred CcEEecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccC---------- Q lcl|Aclame:pro 79 NPEIIEGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGR---------- 146 (449) Q Consensus 79 ~~~i~~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~---------- 146 (449) ++++...++... +.+++++. .++..++.++.+.+..||.|++++..+ +|...-..+++.. T Consensus 84 ~~~~~~~d~~~~--------~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~v~d~~~~ 155 (452) T protein:vir:36 84 PVKKSHSDKEIL--------TKLQEFDNLNDMEDEESELAKMACIYGRAFEFLYQDEDTQTNVVYNSPENMFMVYDDTVK 155 (452) T ss_pred CceeecCChhHH--------HHHHHHHhhcChhHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcccceEEEEcCCCC Confidence 999865543221 22333333 256677888888889999999999885 3332222222211 Q ss_pred -ceeeEEEeccccCChhhhhccccccccCCc-eeEEeeecccCCCccceEEccce---eeeccCCCCCcchhHHHHHHHH Q lcl|Aclame:pro 147 -GLQKVSVSWAGSLKVAEWDTGINSKTYGQP-KLWKYTERLPNGSSRRVDIHPDR---VFILGDYSEDAIGFLEPAYNAF 221 (449) Q Consensus 147 -~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P-~~y~i~~~~~~~~~~~~~IH~SR---li~~~~~~~~G~s~l~~~~~~l 221 (449) .+.....+|...- ....-..+.| ..|.+.....+.......-|.-- |+.|.+ ...|.|.++.+..-+ T Consensus 156 ~~~~~~i~~~~~~~-------~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-~~~g~sd~e~v~~li 227 (452) T protein:vir:36 156 QEPLFAVRYGVDED-------KKLQGEVYTLLETIKISGENDEISFGEGTYNPYPDLPVVEFYF-NEERMSIFESVISLV 227 (452) T ss_pred CceEEEEEEEEecC-------ceEEEEEEecCeEEEEEEcCCceEEecceeccCCcccEEEecC-CCCCCcchHHHHHHH Confidence 1111111111000 0000001111 12222111000000001123322 222322 235888888888777 Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecC-----CCceEE- Q lcl|Aclame:pro 222 VSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQ-----GATVTP- 295 (449) Q Consensus 222 ~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~ed~~~- 295 (449) ..++.+....+..+...+...+.+. + .....+.... +..+ .++.+.. +-+++. T Consensus 228 Da~d~~~s~~~~~~~~~~~p~~~~~--------g-----~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~l 286 (452) T protein:vir:36 228 NAFNKAISEKANDVDYFSDQYLTFL--------G-----AAVEEEDLKN-------IRSN-RVINYYADGEGKNVDVKFL 286 (452) T ss_pred HHHHHHHHHHHHHHHHhcCceeEee--------c-----CCcCchhhhh-------hhhc-ceEEecCCCCccCCcceeE Confidence 7777776665554433322222211 0 0001111111 1111 1122211 123444 Q ss_pred -eecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHH----HHHHHHHHHHHhhhHHHHHHHHHHHHH--h Q lcl|Aclame:pro 296 -LVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQK----YFNARCQSRRVDLSFEIEDFCDKLIEL--K 368 (449) Q Consensus 296 -~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~----nyyd~I~~~Qe~~~~p~~~~l~~l~~~--~ 368 (449) .+.+.+++...++.+.+.|...+++|- .-++. .|+.|+.=++ .-...++.+|..+...+.+++..++.. . T Consensus 287 ~~~~~~~~~~~~~~~l~~~I~~~s~~p~-~~~~~--~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~ 363 (452) T protein:vir:36 287 EKPDSDSQTENLLDRLTKLIFQTTMVAN-ISDES--FGSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLFCELSTN 363 (452) T ss_pred eecCCHHHHHHHHHHHHHHHHHHhCccc-cCccc--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 445668899999999999999999995 22332 2333332232 233444444444444444444333222 1 Q ss_pred cCCC--CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCcccc-CH-HHHHH---H----hcCCCCCCCCCCCCC Q lcl|Aclame:pro 369 IIDA--VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAF-SR-EEIRT---A----AGYDNDDEEPLGEED 437 (449) Q Consensus 369 ~~~~--~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~-~~-~e~r~---~----~~~~~~~~~~~~~~~ 437 (449) .+.. ..++.+.|+|-...++++.|++..+.+...+.-.-....+-+ ++ +|+.. + .........+.+..+ T Consensus 364 ~~~~~~~~~i~i~f~~~~p~d~~~~a~~~~k~~g~iS~et~~~~~~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~ 443 (452) T protein:vir:36 364 VSNKDSWKDIEYTFTRNEPKDIKEQAETANILMGITSQETALSVISVIPDVQAEMEKIKKEEASTAIFDKDKQPSEKGTD 443 (452) T ss_pred cCCccccccceEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCccc Confidence 2222 246899999999999999999887765433321111112222 22 33321 1 011111000100000 Q ss_pred cchhhcccc Q lcl|Aclame:pro 438 GDEEDKATD 446 (449) Q Consensus 438 ~~ee~~~~~ 446 (449) ++..+-+.| T Consensus 444 ~~~~~~~~e 452 (452) T protein:vir:36 444 TVVSETNEE 452 (452) T ss_pred ccCccccCC Confidence 000001111 No 178 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=98.46 E-value=3.1e-07 Score=56.28 Aligned_cols=391 Identities=10% Similarity=-0.067 Sum_probs=161.6 Q ss_pred CchhhHHHH-H-hhhHHHHHHHHHHHHHHHHhhcCcccccchhccC-CcccCCHHHHHHHHHcCchhHHHHhhhHHHHhc Q lcl|Aclame:pro 1 MTDKLTLAV-N-HALNDARMARARMGLMVPTMGLDNKRHSAWCEYG-FPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQ 77 (449) Q Consensus 1 ~~~~~~~~v-~-~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~-~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r 77 (449) |+.+.-... + |.....+... ...+..+. +....... .+... ..--...++++|||..+.=++- T Consensus 17 ~~~~~i~~~i~~~~~~~~r~~~-~~~yy~g~-------~~i~~~~~~~~~~~------~~ki~~n~~~~ivd~~~~~l~g 82 (453) T protein:vir:73 17 ITDKVVNDFMKKHQEEVERYEY-LGNMYKGI-------MEISSQKAKDSWKP------DNRLTNNFAKYIVDTFVGYFNG 82 (453) T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHhccc-------cchhcCCCCCccCc------cceeecchHHHHHHHhhhhhcc Confidence 554433222 1 1111111111 11222211 11100000 00000 1112357889999999999999 Q ss_pred CCcEEecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCc-------- Q lcl|Aclame:pro 78 TNPEIIEGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRG-------- 147 (449) Q Consensus 78 ~~~~i~~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~-------- 147 (449) +++++...++... .. +++++. .++..+..++.+.+..||.|++++..+ +|...-..+++... T Consensus 83 ~~~~~~~~d~~~~----~~----l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~dd~~ 154 (453) T protein:vir:73 83 IPIKKTHDDKSVL----EA----MQLFDNLNDMEDEESELAKIACVYGRAYELMYQNESTESEVIYCSPLNVFMVYDDSI 154 (453) T ss_pred cCceeecCChHHH----HH----HHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEEeCCC Confidence 9998755433221 12 222222 246667778888888999999999885 33221222222111 Q ss_pred ---eeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEcccee---eeccCCCCCcchhHHHHHHHH Q lcl|Aclame:pro 148 ---LQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRV---FILGDYSEDAIGFLEPAYNAF 221 (449) Q Consensus 148 ---l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRl---i~~~~~~~~G~s~l~~~~~~l 221 (449) ......++. ...... ...-|..=..|++.....+.......-|.--. +.|.+ ...|.|.++.+-.-+ T Consensus 155 ~~~~~~~i~~~~-~~~~~~-----~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-~~~g~s~~~~v~~li 227 (453) T protein:vir:73 155 KQKPLFAVYYGF-DEEGNL-----SGTVYTLLETISITGKAGEVKFGESTYNVYSDLPIVEYNF-NEERQSIFEPVHSLI 227 (453) T ss_pred CceeEEEEEEEE-ecCceE-----EEEEEeCCeEEEEEecCCceEEccceeccCCceeEEEecC-CCCCCcchhhHHHHH Confidence 111111110 000000 00001111222222111000000111233332 33332 245888888877777 Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHH-H-HHHHHhccc-cceeecCCCce--EEe Q lcl|Aclame:pro 222 VSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFN-E-VAGEINRGN-DVLMTTQGATV--TPL 296 (449) Q Consensus 222 ~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~-~~~l~~~~ed~--~~~ 296 (449) ..++.+....+..+-..+...+.+. +. ...++....+. . .+....... .......+.++ -.. T Consensus 228 Da~~~~~S~~~~~~~~~~~~~l~~~--------g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 294 (453) T protein:vir:73 228 NSYNKVTSEKANDVEYFSDQYLVFL--------GA-----EVDEEDAKNIKDNRLINFFDKNSNGQGTNAAKVDVKFLDK 294 (453) T ss_pred HHHHHHHHHHHHHHHHhccceeeee--------cC-----CCCchhhhcccccccccccccccccccccccCceeEEeee Confidence 7777766555544322221112111 00 00011111110 0 000000000 01111122334 445 Q ss_pred ecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHH-H---HHHHHHHHHhhhHHHHHHHHHHHHH-hc- Q lcl|Aclame:pro 297 VTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKY-F---NARCQSRRVDLSFEIEDFCDKLIEL-KI- 369 (449) Q Consensus 297 ~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~n-y---yd~I~~~Qe~~~~p~~~~l~~l~~~-~~- 369 (449) +.+.+++...++.+.+.|...+++|-. +....|+ +++ -++. | ...++.+|..+...+.+++..+... .. T Consensus 295 ~~~~~~~~~~~~~l~~~I~~~s~~p~~---~~~~~gn-~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~ 370 (453) T protein:vir:73 295 PDSDVQTENLLNRLERSIFQFTMAANI---SDENFGN-SSGVALAYKLQAMSNLALSFQRKFQSALNRRYSLWSSLSTNA 370 (453) T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCccc---CcccccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 566788999999999999999999952 2222233 344 2332 2 3344444444445455444433222 12 Q ss_pred CCC--CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCC-CCCCCCCCCcchhhcccc Q lcl|Aclame:pro 370 IDA--VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDND-DEEPLGEEDGDEEDKATD 446 (449) Q Consensus 370 ~~~--~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~-~~~~~~~~~~~ee~~~~~ 446 (449) +.. ..+++++|+|-...++++.|++..+.+. +++.+-+.+..+.-.+ ..+...-..+.++..... T Consensus 371 ~~~~~~~~i~v~f~~~~p~~~~~~a~~~~k~~g------------iis~et~~~~~~~~~d~~~E~~ri~~E~~~~~~~~ 438 (453) T protein:vir:73 371 SNKDAWKDIEYTFTRNEPKDIKEQAETANILKG------------ITSEETALSVISVIPDVQAEMEKIKKKKLLQLSLT 438 (453) T ss_pred CCccccccceEEeCCCCCCCHHHHHHHHHHHhc------------cCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH Confidence 221 2468999999999999999987655432 2333333332221100 000000000000000000 Q ss_pred c----CC Q lcl|Aclame:pro 447 S----AA 449 (449) Q Consensus 447 ~----~a 449 (449) . .+ T Consensus 439 ~~~~~~~ 445 (453) T protein:vir:73 439 RTSNLVR 445 (453) T ss_pred HhccCCc Confidence 0 00 No 179 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=98.42 E-value=7.2e-07 Score=54.27 Aligned_cols=402 Identities=11% Similarity=0.042 Sum_probs=175.2 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCccc-----ccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKR-----HSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKC 75 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r-----~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~ 75 (449) |+ |-|+++-.-+. +-+.+...-|+|-.+ |--..+-|-...-..+-++.|-++.+-...++.+--.-. T Consensus 1 ~~----~~~~~~p~~~~----~~~~~~~~~~~~~~~g~~~~D~~lr~~gg~~~~~~~l~~~m~e~D~~v~s~l~~Rk~av 72 (446) T protein:vir:98 1 MN----MEVRNAPTPAI----RRRTIYAMEHLGLATSYLSEDGGYKRAGKPTYQQLSAWDEAAQTEPIIAQGLDSIALSV 72 (446) T ss_pred Cc----ccccCCCchhh----hhhhhhccccchhhcccCCcchHhhhcCCChHHHHHHHHHHHhcchHHHHHHHHHHHHh Confidence 44 33444221111 001111111111111 111111110000011223455666788888888888877 Q ss_pred hcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEE-- Q lcl|Aclame:pro 76 WQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSV-- 153 (449) Q Consensus 76 ~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v-- 153 (449) ++.-|+|..++ .+....++..+..+....+..-+.+| -.||+|+.=+.-.-+.....|-....++..+++ T Consensus 73 ~~~~w~V~p~~----~~~a~~v~~~l~~~~~~~~~~~~lda----i~~G~s~~Eivw~~~~g~~~p~~~~d~~~~~~~~~ 144 (446) T protein:vir:98 73 LNKVGPYQHGD----KRIKKFIDDQLRNRAKTWISHCVKSI----MTYGFSLSEQIYAHGARDNMPATVLDDIVNYHPLQ 144 (446) T ss_pred hcCCceecCcc----HHHHHHHHHHHhhcCchhHHHHHHHH----HhhCceeeeEEEeecccccccchhhcccccccccc Confidence 88778885432 22222233333332111232334444 358999886555322222334332222221111 Q ss_pred -ecc----------ccCChhhhhc---ccc-ccccCCceeEEeeecccCCCccceEEccceeeecc----CCCCCcchhH Q lcl|Aclame:pro 154 -SWA----------GSLKVAEWDT---GIN-SKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILG----DYSEDAIGFL 214 (449) Q Consensus 154 -~~~----------~~i~~~~~~~---Dp~-s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~----~~~~~G~s~l 214 (449) .|. ...+...+.. .|. .-.++.|..+. +..+.+..|...|++.+. ++...|.|++ T Consensus 145 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~iP~~kfi~~~~~~~~~~p~G~gLl 218 (446) T protein:vir:98 145 VMLIANDNGRIVDGDTVTASQYKSGYWVPLPPYRIGDPPKKV------DVVGSHVRLPSHKRLFINYNTKGNNPWGTSCL 218 (446) T ss_pred ceeeeccCCccccccccchhhcccccccCcccchhhhhhhhc------ccCcccccccccceEEEEecCCCCCccccchH Confidence 111 1111111110 010 01122222221 112234556666766653 3456789999 Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHH----HHHHHHHHHHhccccceee--- Q lcl|Aclame:pro 215 EPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQ----DKFNEVAGEINRGNDVLMT--- 287 (449) Q Consensus 215 ~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~--- 287 (449) +.||+...=-..+..-++.-+-+...-...-++.....-.+ .......+.. +.+...+..+.+. ..+++ T Consensus 219 r~~~w~~~fK~~~~~~w~~f~E~yG~P~~vGkyp~ga~~~~---~~~~~~~~~~~~~~~~L~~av~~~~~d-a~~ii~~~ 294 (446) T protein:vir:98 219 TSVLDYSIFKRAFRDMMLIALDRYGTPLIYVIVPPGNTGVV---EEAPDGTEITTTIAEQAEDALRRLSTD-SGLVLTQL 294 (446) T ss_pred HHHHHHHHHHHhhHHHHHHHHhHcCCceeEEeecCCCCccc---ccchhHHHHHHHHHHHHHHHHHhcccc-ceeeeecc Confidence 99998654333332233332222221111111111000000 0000000111 1222223333222 22333 Q ss_pred --cCCCceEEeecccCC---hHHHHHHHHHHHHhhhcCCceeeeccCcc--cccc-ch-hHHHHHHHHHHHHHhhhHHHH Q lcl|Aclame:pro 288 --TQGATVTPLVTSVAD---PTATYNVNLQTAAAGVDIPTRILIGNQQA--ERSS-TE-DQKYFNARCQSRRVDLSFEIE 358 (449) Q Consensus 288 --~~~ed~~~~~~~lsg---l~d~~~~~~~~iaaas~IP~t~L~Gqs~g--g~~s-~e-D~~nyyd~I~~~Qe~~~~p~~ 358 (449) -++-+++.++..=++ ...+++.+-.+||-+.--+.. .+|++.+ |-++ ++ -...+.+.+++....+..-+. T Consensus 295 ~~P~g~eie~~ea~~~~~~~~~~~i~~~d~~IskaiLg~~L-tl~~~~~~~GS~ala~vh~~V~~d~~~aDa~~i~~tln 373 (446) T protein:vir:98 295 SKEQPVQVGALTTGNNFSDSFERAISLCDNNMLMGMGIPNL-LVQNRETTFGTGRASEIQLELFDGKINSIFDTVIHAFT 373 (446) T ss_pred cCCCCceEEeeccccCChhhHHHHHHHHHHHHHHHHhcccc-cccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH Confidence 345578877765444 467777777888877666632 3365543 2222 22 234567777777766665565 Q ss_pred -HHHHHHHHHhcCCCCCCceE-EeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC Q lcl|Aclame:pro 359 -DFCDKLIELKIIDAVAKKAV-IWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP 432 (449) Q Consensus 359 -~~l~~l~~~~~~~~~~~~~~-~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~ 432 (449) .++..|+...+++...-..+ ...|-.... |..++ ++.|+++++++++|..-..+.+.+|+..+++..++.. T Consensus 374 ~~Li~~l~~lNf~~~~~~~~~~~~~~~~~~~--e~eDl-~~~a~~~~~L~~~G~~~p~~~~~ire~~giP~~~~~~ 446 (446) T protein:vir:98 374 EQVIGNLIRLNFDPALYPLASNTGYITRLPG--RATDL-AALVEAIKQMHDMGFLVDGDKDHIRSITGLPDAISST 446 (446) T ss_pred HHHHHHHHHhCCCccccccccccccceeccC--ChhhH-HHHHHHHHHHHhCCccccccHHHHHHHhCcCCCCCCC Confidence 45666777777643211111 111222233 33343 3569999999999943222456799999986665444 No 180 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=98.38 E-value=9.6e-07 Score=53.59 Aligned_cols=386 Identities=9% Similarity=-0.047 Sum_probs=168.2 Q ss_pred CchhhHHHHHhhh--HHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDKLTLAVNHAL--NDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) |+.++-.-+=... ...+...- ..+..+. +......--.... ....-...+++.||+..+.=++.+ T Consensus 1 l~~~~l~~~i~~~~~~~~r~~~l-~~yy~g~-------~~il~~~~~~~~~-----~~~ki~~n~~~~ivd~~~~~l~g~ 67 (429) T protein:vir:98 1 MTKDLLSELIQKHRSFNLSYSAY-KQLYEGD-------HAILQQKQKEQYK-----PDNRLVVNFAKYIVDTFNGYFIGV 67 (429) T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHhccc-------cccccccccccCC-----CcceeecchHHHHHHHHhhhhccc Confidence 7776643332221 11121111 1121111 1111110000000 011234679999999999999999 Q ss_pred CcEEecCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCc--------- Q lcl|Aclame:pro 79 NPEIIEGDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRG--------- 147 (449) Q Consensus 79 ~~~i~~~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~--------- 147 (449) ++++...++... . .++++... ++..++.++.+.+..||.|++++..+ +|...-..+++... T Consensus 68 ~~~~~~~~~~~~----~----~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~~~~~~p~~~~~v~dd~~~ 139 (429) T protein:vir:98 68 PVQTSHENKQVS----N----YLELLDGYNDQDDNNAELSKICSIYGHGYELVFNDENAEAGITYLTPLEAFIVYDDSIR 139 (429) T ss_pred CceeecCChHHH----H----HHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCcEEEEEEcccceEEEEeCCCC Confidence 999765433221 1 22222222 45567778888888999999999885 33322222222111 Q ss_pred ---eeeEEEeccccCChhhhhccccccccCCceeEEe-eecccCCCccceEEcc-ce--eeeccCCCCCcchhHHHHHHH Q lcl|Aclame:pro 148 ---LQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKY-TERLPNGSSRRVDIHP-DR--VFILGDYSEDAIGFLEPAYNA 220 (449) Q Consensus 148 ---l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i-~~~~~~~~~~~~~IH~-SR--li~~~~~~~~G~s~l~~~~~~ 220 (449) +..++. +... . ....-.|..+..++. .....+.......=|+ .+ |+.|.+ ..+|.|.++.+..- T Consensus 140 ~~~~~~i~~-~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-~~~g~sd~e~v~~l 210 (429) T protein:vir:98 140 QKPLFAVRY-FYNK---G----GVLEGSYSDASNITYFKDGEKGIEIGESEPHPFDGVPMIEYVE-NEERQSLLASVVTL 210 (429) T ss_pred CceEEEEEE-EEec---C----ceEEEEEEeCceEEEEEecCCceEecccccccCCccceEEecC-CCCCCCcHHHHHHH Confidence 111111 1100 0 000011111111111 1000000000001122 22 233333 34688999988887 Q ss_pred HHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCC----Cc--eE Q lcl|Aclame:pro 221 FVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQG----AT--VT 294 (449) Q Consensus 221 l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----ed--~~ 294 (449) +..++.+....+..+-..+...+.+. + ..+.++.... +..+ .++.+.++ .+ |- T Consensus 211 iD~~d~~~s~~~~~~~~~~~p~~~i~--------g-----~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~l 269 (429) T protein:vir:98 211 INAFNKAISEKANDVEYFADAYLKIL--------G-----AELDDETLKS-------LRDT-RIINLKDTDAQQLTVEFL 269 (429) T ss_pred HHHHHHHHHHHHHHHHHhcCceeeee--------c-----CCCCcchhhh-------HhhC-ceeeccCCCCCCcceeEE Confidence 77777776555543322222222111 0 0111111111 1111 12222221 13 44 Q ss_pred EeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh-HH----HHHHHHHHHHHhhhHHHHHHHHHHHHH-h Q lcl|Aclame:pro 295 PLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-QK----YFNARCQSRRVDLSFEIEDFCDKLIEL-K 368 (449) Q Consensus 295 ~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD-~~----nyyd~I~~~Qe~~~~p~~~~l~~l~~~-~ 368 (449) ..+.+..++...++.+.+.|...+++|-. -++. .|+ .+++ ++ .-...++.+|..+...+.+++..++.. + T Consensus 270 ~~~~~~~~~~~~~~~l~~~i~~~s~~p~~-~~~~--~gn-~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~ 345 (429) T protein:vir:98 270 QKPDADATQEHLLDRLENLIFRTAMVANI-SDES--FGT-ASGIALRYRLQAMDNLAKTKERKFMSGMNRRYKLIASYPT 345 (429) T ss_pred eecCCHHHHHHHHHHHHHHHHHHhCcccc-Cccc--ccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 55667778999999999999999999953 2222 233 3442 32 233445555544555554444333322 1 Q ss_pred cC-CC--CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCcccc-CH-HHHH---HHh--cCCCCC-CCCCCCCC Q lcl|Aclame:pro 369 II-DA--VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAF-SR-EEIR---TAA--GYDNDD-EEPLGEED 437 (449) Q Consensus 369 ~~-~~--~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~-~~-~e~r---~~~--~~~~~~-~~~~~~~~ 437 (449) .. .. +.+++++|+|-...++++.|++..+.+...+.-.-....+-+ ++ .|+. ++. .++... .....+.+ T Consensus 346 ~~~~~~d~~~i~v~f~~~~p~~~~~~a~~~~kl~g~is~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~ 425 (429) T protein:vir:98 346 SKIGPKDWIGIKYKFTRNLPANLLEESQIAGNLAGIVSEETQVGVLSIVENPQKEIERKNSDKSTLISRQAGGLNGQNTT 425 (429) T ss_pred cCCCccccccceEEeCCCCCcCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCC Confidence 11 11 246899999999999999999887765433221111112222 22 2221 110 000000 00011111 Q ss_pred cchh Q lcl|Aclame:pro 438 GDEE 441 (449) Q Consensus 438 ~~ee 441 (449) .+.+ T Consensus 426 ~~~~ 429 (429) T protein:vir:98 426 TILE 429 (429) T ss_pred CCCC Confidence 1111 No 181 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=98.37 E-value=9.7e-07 Score=53.54 Aligned_cols=395 Identities=9% Similarity=-0.026 Sum_probs=166.6 Q ss_pred CchhhHHHH--HhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDKLTLAV--NHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) |+.++-... .|.....+... ...+..+.-..-..+.+ ..+ ... ..+ ...+++.||+..+.=++-+ T Consensus 17 ~~~~~l~~~i~~~~~~~~r~~~-~~~yy~g~~~i~~~~~~---~~~---~~~----~ki--~~n~~~~ivd~~~~~l~g~ 83 (453) T protein:vir:39 17 ITNEVVTKFMEKHRLEVARYEY-LKNMYRGIMAIDAEPTK---DLW---KPD----NRL--TVNFTKYIVDTFTGYFNGI 83 (453) T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHhhccCchhcCCCc---ccc---Ccc----cee--ecchHHHHHHHHhhhhccc Confidence 555532222 11111112111 11122211000000000 000 000 111 3468899999999999999 Q ss_pred CcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccC----------- Q lcl|Aclame:pro 79 NPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGR----------- 146 (449) Q Consensus 79 ~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~----------- 146 (449) ++++..+++... ..+...+++ .++...+.++.+.+..||.|++++..+. |...-..+++.. T Consensus 84 ~~~~~~~d~~~~----~~l~~i~~~---N~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~v~d~~~~~ 156 (453) T protein:vir:39 84 PVKKSHSDKETL----SKLQEFDNL---NDMEDEESELAKMACIYGRAFELLYQNEETQTNVIYNTPENMFMVYDDTIKQ 156 (453) T ss_pred CceeccCChHHH----HHHHHHHHh---cChhHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEecCCCCC Confidence 998865543322 122222221 2555667778888888999999988843 322112222211 Q ss_pred ceeeEEEeccccCChhhhhcc-ccccccCCc-eeEEeeecccCCCccceEEccceee---eccCCCCCcchhHHHHHHHH Q lcl|Aclame:pro 147 GLQKVSVSWAGSLKVAEWDTG-INSKTYGQP-KLWKYTERLPNGSSRRVDIHPDRVF---ILGDYSEDAIGFLEPAYNAF 221 (449) Q Consensus 147 ~l~~i~v~~~~~i~~~~~~~D-p~s~~yg~P-~~y~i~~~~~~~~~~~~~IH~SRli---~~~~~~~~G~s~l~~~~~~l 221 (449) .+.....++.. .+ ..--.++.| ..|.+.....+.......=|.-..+ .|.+ ...|.|.++.+..-+ T Consensus 157 ~~~~~ir~~~~--------~~~~~~~~~yt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-~~~g~sd~e~v~~li 227 (453) T protein:vir:39 157 EPLFAVRYGYD--------DDYKLYGEVYTKETTYALNGTMGFYNMTEQAPNPFDDLPVVEFYF-NEERMSIFESVISLV 227 (453) T ss_pred eEEEEEEEEEe--------CCeEEEEEEEeCCeEEEEEecCCceeeecccccCCCceeEEEecC-CCCCCcchhhhHHHH Confidence 11111111110 00 000011112 2233221110000001112433322 2332 346889998888777 Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceE--Eeecc Q lcl|Aclame:pro 222 VSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVT--PLVTS 299 (449) Q Consensus 222 ~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~--~~~~~ 299 (449) ..++.+....+..+-..+...+.+. + . ...++....+... .+-...+..-...+.++. +.+.+ T Consensus 228 Da~~~~~s~~~~~~~~~~~p~~~~~--------g---~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lt~~~~ 292 (453) T protein:vir:39 228 NAFNKAISEKANDVDYFSDQYLTFL--------G---A--AVEEEDLKNIRSN--RVINYYGESSEAKNVDVKFLEKPDS 292 (453) T ss_pred HHHHHHHHHHHHHHHHhhCceeeee--------c---C--CCCchhhhhhhhc--ceeeecCCCCCCCCCceeEEeecCC Confidence 7777766555543322222222111 0 0 0011111111100 000000001111233444 44566 Q ss_pred cCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchhHH----HHHHHHHHHHHhhhHHHHHHHHHHHHH-h-cCCC- Q lcl|Aclame:pro 300 VADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQK----YFNARCQSRRVDLSFEIEDFCDKLIEL-K-IIDA- 372 (449) Q Consensus 300 lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD~~----nyyd~I~~~Qe~~~~p~~~~l~~l~~~-~-~~~~- 372 (449) ..++...++.+.+.|...+++|-. +....|++|+.=++ .-...++.+|..+..-+.+++..+... . .+.. T Consensus 293 ~~~~~~~~~~l~~~I~~~s~~p~~---~~~~~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~ 369 (453) T protein:vir:39 293 DSQTENLLDRLTKLIFQTTMVANI---SDESFGSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCELSTNVSNKE 369 (453) T ss_pred HHHHHHHHHHHHHHHHHHhCCccc---ccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc Confidence 788999999999999999999952 22222333332232 223444445544444344333322211 1 1222 Q ss_pred -CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccC-H-HHHHH---H----h----cCCCCCCCCCCCCCc Q lcl|Aclame:pro 373 -VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFS-R-EEIRT---A----A----GYDNDDEEPLGEEDG 438 (449) Q Consensus 373 -~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~-~-~e~r~---~----~----~~~~~~~~~~~~~~~ 438 (449) ..++++.|+|-...++++.|++..+.+..+..-.-....+.++ + +|+.. + . ...+......++.++ T Consensus 370 ~~~~i~v~f~~~~p~~~~~~a~~~~kl~g~is~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~ 449 (453) T protein:vir:39 370 AWKDIEYTFTRNEPKDIKEQAETANILMGITSQETALSVISVIPDVQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVVPE 449 (453) T ss_pred ccccceEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC Confidence 2478999999999999999998887765433321111122222 2 33321 1 0 001111111111111 Q ss_pred chhh Q lcl|Aclame:pro 439 DEED 442 (449) Q Consensus 439 ~ee~ 442 (449) ++++ T Consensus 450 ~~~e 453 (453) T protein:vir:39 450 TNEE 453 (453) T ss_pred cCCC Confidence 1111 No 182 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=98.31 E-value=1.5e-06 Score=52.56 Aligned_cols=395 Identities=11% Similarity=0.055 Sum_probs=176.4 Q ss_pred Cch-------hhHHHHHhhhHHHHHHHHHHHHHH-HHhhcCccc-ccchhccCCcccCCHHHHH-HHHHcCchhHHHHhh Q lcl|Aclame:pro 1 MTD-------KLTLAVNHALNDARMARARMGLMV-PTMGLDNKR-HSAWCEYGFPELVTYENLY-SLYRRGGIAHGAVEK 70 (449) Q Consensus 1 ~~~-------~~~~~v~~~~~~~~~~~~~~~~~~-~~~g~~t~r-~~~~~~~~~~~~~~~~~l~-~~Y~~~~l~r~iVd~ 70 (449) |.. .++...-..-.++.++..+..+.. +..|+...| ..............+.+|. .|..++.-...++.+ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~~~m~e~D~~i~s~l~~ 80 (528) T protein:vir:10 1 MAAIVDIYGNPLRTQQLRKQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQGHLQAQAELFMDMEERDAHLFAEMSK 80 (528) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 322 111111000111222222333322 233332212 1122222222222222332 233467778888888 Q ss_pred hHHHHhcCCcEEecCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCc Q lcl|Aclame:pro 71 LVGKCWQTNPEIIEGDD--ADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRG 147 (449) Q Consensus 71 pa~d~~r~~~~i~~~~~--~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~ 147 (449) --.-.+..-|+|..+.+ .++.+....++..+..+ .-|..+...+-.+.+||+|++=+.-. ++..+ . T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~---~~f~~~i~~~lda~~~G~s~~Ei~w~~~~g~~--------~ 149 (528) T protein:vir:10 81 RKRAVLGLDWTIEPPRNASAAEKADAEYLHELLLDL---EGIEDLMLDCMDGVGHGYSAIELDWSLQGREW--------L 149 (528) T ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhCC---ccHHHHHHHHHhhhhhcceeEEEEEeecCCce--------e Confidence 88888877778865432 22222222233322221 22445555555678999999876542 22111 1 Q ss_pred eeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeecc----CCCCCcchhHHHHHHHHHH Q lcl|Aclame:pro 148 LQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILG----DYSEDAIGFLEPAYNAFVS 223 (449) Q Consensus 148 l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~----~~~~~G~s~l~~~~~~l~~ 223 (449) +..+.+..+..+ ..|+. +... +.+. ++...+..+++-+.+++. .+...|.++++.||....- T Consensus 150 ~~~~~~r~~~~f-----~~~~~----~~~~-l~~~----~~~~~g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~f 215 (528) T protein:vir:10 150 PQAFDHRPQSWF-----QLNPD----DQDE-LRLR----DNSIAGEVLQPFGWIMHKPRSRSGYVARSGLFRVLAWPYLF 215 (528) T ss_pred EEEeeeecccce-----eeccC----CCcE-Eecc----CCCCCceeecCCCeEEEeecCCCCCccccchHHHHHHHHHH Confidence 222322221111 11211 1111 1111 122234556666655543 3445689999999986543 Q ss_pred HHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeecccCCh Q lcl|Aclame:pro 224 LEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSVADP 303 (449) Q Consensus 224 ~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~lsgl 303 (449) -.....-++.-+-+...-....++ .....++..+.+.+.+..+.+. ..+++..+.+++.++.+=++. T Consensus 216 K~~~~~~w~~f~E~yG~P~~igky------------~~~a~~~ek~~L~~al~~i~~~-~~~iiP~~~~ie~~ea~~~~~ 282 (528) T protein:vir:10 216 KHYSTADLAEMLEIYGLPIRLGKY------------PPGTPDEEKVTLLRAVTGLGHA-AAGIIPESMSIDFQEASKGSA 282 (528) T ss_pred HHhhHHHHHHHHHHcCCCeEEEec------------CCCCCHHHHHHHHHHHHHHhhC-cEEEecCCceeEEeecCCCCh Confidence 332222222222111111111111 1112344445555556655443 357778888999988764443 Q ss_pred ---HHHHHHHHHHHHhhhcCCceeeecc------Ccc--ccccchh--HHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhc Q lcl|Aclame:pro 304 ---TATYNVNLQTAAAGVDIPTRILIGN------QQA--ERSSTED--QKYFNARCQSRRVDLSFEIED-FCDKLIELKI 369 (449) Q Consensus 304 ---~d~~~~~~~~iaaas~IP~t~L~Gq------s~g--g~~s~eD--~~nyyd~I~~~Qe~~~~p~~~-~l~~l~~~~~ 369 (449) ..+++..-.+||-+ ++|| +.| |..+-++ ....-+.+.+....+..-+.+ ++..|+...+ T Consensus 283 ~~f~~li~~~d~~Isk~-------iLGqtlTs~~~~g~~gS~Alg~vh~~v~~di~~aDa~~i~~tln~~li~~l~~~N~ 355 (528) T protein:vir:10 283 EPFMAMMRWCDDSMSKA-------ILGGTLTSQTSESGGGAYALGQVHNEVRHDLLAADARQLAATLSRDLLWPLLVLNR 355 (528) T ss_pred hHHHHHHHHHHHHHHHH-------HhhhhhhccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Confidence 33455555565532 3443 111 2222222 344556666655555555653 5666777776 Q ss_pred CCC--CC-CceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCC-C-CCCCCcch-hh- Q lcl|Aclame:pro 370 IDA--VA-KKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEE-P-LGEEDGDE-ED- 442 (449) Q Consensus 370 ~~~--~~-~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~-~-~~~~~~~e-e~- 442 (449) +.. +. --.|+|..--. .++ ++.|++++++++.|. .++.+.+|+..+++.+.+. + ........ .. T Consensus 356 ~~~~~~~~~p~~~~~~~e~------eDl-~~~a~~~~~L~~~G~--~i~~~~i~e~~gip~p~~~e~~~~~~~~~~~~~~ 426 (528) T protein:vir:10 356 SGNLDARRAPRLVFDLKDR------ADL-AAMATSLPPLVKLGV--QVPVNWVQEQLGIPLPANGEAVLGDQAGAGIAQL 426 (528) T ss_pred CCCCCccccceEEecCCCc------ccH-HHHHHHHHHHHhCCC--CCCHHHHHHHhCCCCCCCCcccccCCCccccccc Confidence 642 11 23555544322 222 357888999999883 3688999999998654321 1 10000000 00 Q ss_pred ------cc-----------cccCC Q lcl|Aclame:pro 443 ------KA-----------TDSAA 449 (449) Q Consensus 443 ------~~-----------~~~~a 449 (449) .. .+..| T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~ 450 (528) T protein:vir:10 427 SRRPGPRIAALAQVIGPRYRDQEA 450 (528) T ss_pred Ccccccccccccccccccccccch Confidence 00 00000 No 183 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=98.27 E-value=1.9e-06 Score=52.01 Aligned_cols=409 Identities=13% Similarity=0.110 Sum_probs=174.7 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCccc------ccch------hcc--CCcccCCH-----HHHHHHHHcC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKR------HSAW------CEY--GFPELVTY-----ENLYSLYRRG 61 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r------~~~~------~~~--~~~~~~~~-----~~l~~~Y~~~ 61 (449) |.+|++--++--.. +. .....+--+.. +..+ ..+ |-+..+.+ .....-+.+- T Consensus 3 ~~~~~k~~~~k~~~-------~~--~~~~~~~i~~~~~i~~~~~~~~~i~~~~~~y~g~~~~~~~~~~~~~~~~~~~~sl 73 (522) T protein:vir:47 3 LFQKVKDFFSRGRY-------YM--QTSNLNSILEHPKIAVTQEEYDRIKRNLVYYQSKWDDVQYKNTDGDIKSRPMNHL 73 (522) T ss_pred hHHHHHHHHHHHHH-------Hh--hcccchhccccCCCCCCHHHHHHHHHHHHHhcCCcccccccccCcchhcccceec Confidence 66666633331110 00 00000000000 0000 000 00000100 0011123344 Q ss_pred chhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEecCCCc--- Q lcl|Aclame:pro 62 GIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIRDEKD--- 137 (449) Q Consensus 62 ~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~--- 137 (449) ++++.||+..|+=++-+.++|..+++. .. +.++++.. .++...+.+++..+-..||+++-+.++.+.. T Consensus 74 nl~~~i~~~~A~lv~~e~~~i~v~d~~----~~----~~l~~~l~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~~~~~i~ 145 (522) T protein:vir:47 74 PIARTASKKIASLVYNEQATITTKNEI----LQ----KFLDDMLTNDRFNKNFERYLESCLALGGLAMRPYIDGDKVRVA 145 (522) T ss_pred chHHHHHHHHhhhhcCCcceeecCChH----HH----HHHHHHHhhcchHHHHHHHHHHhhccCCEEEEEEEcCCceEEE Confidence 899999999999999999988655432 22 23333322 2566667777766677788888888754321 Q ss_pred -----cccccccc-CceeeEEEecccc------------CChhhhh-----ccccccccCCceeEEeeecccC------- Q lcl|Aclame:pro 138 -----WNLPATKG-RGLQKVSVSWAGS------------LKVAEWD-----TGINSKTYGQPKLWKYTERLPN------- 187 (449) Q Consensus 138 -----~~~Pl~~~-~~l~~i~v~~~~~------------i~~~~~~-----~Dp~s~~yg~P~~y~i~~~~~~------- 187 (449) .--|+..+ +++...-++.+.. +--.+|. .+...-. +. .|+|....-. T Consensus 146 ~v~ad~~~P~~~~~~~~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~-~~--~~~I~n~ly~~~~~~~l 222 (522) T protein:vir:47 146 FIQAPVFFPLESNTQDVSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTND-KK--YYRITNELYRSDVNDVL 222 (522) T ss_pred EEcCCceEEEEEcCCceEEEEEEEEEEeecccceeEEEEEEEeeeccccccccccccc-CC--ceEEEEEEeecCCCccc Confidence 12354322 2222111111100 0001111 0110011 11 1222211100 Q ss_pred CC-------------ccceEE-ccceee--eccC--------CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh Q lcl|Aclame:pro 188 GS-------------SRRVDI-HPDRVF--ILGD--------YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQL 243 (449) Q Consensus 188 ~~-------------~~~~~I-H~SRli--~~~~--------~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l 243 (449) |. ...+.+ +-.|.+ .|.. ....|+|++..+.+.+..++.+......-+- +... T Consensus 223 G~~v~l~~~~e~~~l~~~~~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~---~g~~ 299 (522) T protein:vir:47 223 GQRVNLSELDKYKNLEPVTVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVR---MGQR 299 (522) T ss_pred CccccccccccccCCCCceEeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHH---hccc Confidence 00 001112 223421 2211 2345999999999988888887655443221 1111 Q ss_pred hhhhhhhhhHHHHHhhhcc---ChHHHHHHHHHHHHHHhccccceeecCCCceEEeeccc--CChHHHHHHHHHHHHhhh Q lcl|Aclame:pro 244 NVNFEKEIDFTNLASLYGV---SIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSV--ADPTATYNVNLQTAAAGV 318 (449) Q Consensus 244 ~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~l--sgl~d~~~~~~~~iaaas 318 (449) .+-+.. .+...... +.......++ .-..+....+.- .+.+..++.++..+ ..+...++.+...++-.+ T Consensus 300 ~i~v~~-----~~l~~~~~~~~g~~~~~~~fd-~~~~~f~~~~~~-~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~ 372 (522) T protein:vir:47 300 RVIVPE-----HLTQRQYQRPDGTIDFRPRFD-VEQNVYMQIGGS-SMDAGGITDLTSPIRANDYILAISEGLKLFEMQI 372 (522) T ss_pred eeecch-----HHhccCCCCCCcccccccccC-cccceEeecCCC-CCCCCcceeeccccChHHHHHHHHHHHHHHHHHh Confidence 111111 11111111 1101111111 001111111111 12233466666554 346667778888888888 Q ss_pred cCCceeeeccCcccc-ccch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----c--CC--CCCCceEEeCCCCCC Q lcl|Aclame:pro 319 DIPTRILIGNQQAER-SSTE---DQKYFNARCQSRRVDLSFEIEDFCDKLIELK----I--ID--AVAKKAVIWDDLNEQ 386 (449) Q Consensus 319 ~IP~t~L~Gqs~gg~-~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~----~--~~--~~~~~~~~f~pL~~~ 386 (449) |++-. -||-..++. +++| ..+.-|.+++.+|..+...+.+++..++.+. + +. .+.+++|.|+.-... T Consensus 373 gls~~-tf~~~~~~~kTAtEi~s~~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~i~~ 451 (522) T protein:vir:47 373 GVSSG-MFTFDGQGMKTATEIVSENSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGVYSGEIPELDDISVNLDDGVFT 451 (522) T ss_pred CCCcc-ccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCCCCC Confidence 88753 455444333 3455 4566888899999877776666666555332 1 12 234689999999999 Q ss_pred CHHHHHHHHHHHHHHHHHHHHcCCc---------cccCHHHHHHHh--------cCCCCCCCCCCCCCcchhhccccc Q lcl|Aclame:pro 387 TGTEKLTNAKTMGEINQTMLGSGDN---------PAFSREEIRTAA--------GYDNDDEEPLGEEDGDEEDKATDS 447 (449) Q Consensus 387 sekE~Aei~~~~A~a~~~~~~~g~~---------~~~~~~e~r~~~--------~~~~~~~~~~~~~~~~ee~~~~~~ 447 (449) ++.+.++...+ ++.+|.+ .-++.+|+++++ ...+......+.++..++..+.+- T Consensus 452 D~~~~~~~~~~-------~v~aG~~s~e~~i~~~~g~~eeea~~el~ri~~E~~~~~~~~~~~~~~~~~~~~~~d~~~ 522 (522) T protein:vir:47 452 DRHAELDYWAK-------MVAAGFSTKKRAIGKTLNISGVEAEKELNAINSELLPMNDAELAIYGMHDQNEEKADDKG 522 (522) T ss_pred CHHHHHHHHHH-------HHhcCCCCHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCCCCCCCCCCCcccccCCCCC Confidence 97766555443 2333322 124555444322 111111111111111111111111 No 184 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=98.22 E-value=2.4e-06 Score=51.37 Aligned_cols=406 Identities=10% Similarity=0.055 Sum_probs=169.2 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHH----HHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHh Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMG----LMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCW 76 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~ 76 (449) =.+.|+--++.-...-+....+.. +..+--..-......+...+........ --+.--.+.+++.||+..+.=++ T Consensus 2 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Yy~g~~~I~~~~~~~~~~~~~~~~~~~~-~~~~ki~~n~~k~Iv~~~~~yl~ 80 (470) T protein:vir:10 2 ELDALKKLIQNTSTSRNDLINNYKQAVNYYENKTDITTRNNGKAKLNKEGKKDPLR-SADNRIPSNFYQLLVDQEAGYVA 80 (470) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccchhcccccccccccc-cCCcccccchHHHHHHhhhhhee Confidence 223333333322221111111111 1111000000100000000000000000 00011247789999999999999 Q ss_pred cCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcc-ccccccc---------- Q lcl|Aclame:pro 77 QTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDW-NLPATKG---------- 145 (449) Q Consensus 77 r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~-~~Pl~~~---------- 145 (449) -+++++..+++.... .+++++..+...++.+..+.+..+|.|++++.++....+ ...+++. T Consensus 81 G~p~~~~~~d~~~~~--------~l~~~~~~~~~~~~~~l~~~~~~~G~a~~~~y~d~~~~~~~~~~~p~~~~~v~d~~~ 152 (470) T protein:vir:10 81 SVFPDIDVGKDADNK--------KIIDVLGDDRALTLNGLLVDSSNAGRAWLHYWIDEDGNFRYGIIQPDQITPIYATTL 152 (470) T ss_pred ccceeeecCchHHHH--------HHHHHHhhhHHHHHHHHHHHHhhcCeeEEEEEecCCCceEEEEEcccceEEEEcCCC Confidence 999998665433221 222333334556667777778889999999998532221 1212211 Q ss_pred -CceeeEEEeccccCChhhhhcccccccc--CCceeEEeeecccC-------------------CCccceEEcc-cee-- Q lcl|Aclame:pro 146 -RGLQKVSVSWAGSLKVAEWDTGINSKTY--GQPKLWKYTERLPN-------------------GSSRRVDIHP-DRV-- 200 (449) Q Consensus 146 -~~l~~i~v~~~~~i~~~~~~~Dp~s~~y--g~P~~y~i~~~~~~-------------------~~~~~~~IH~-SRl-- 200 (449) +.+..+..+|...-..+..... .-.-| +.-.+|.-. .... .......-|. .+| T Consensus 153 ~~~~~a~ir~y~~~~~~~~~~~~-~~e~yt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 230 (470) T protein:vir:10 153 DNKLLGILRSYKQLDPDSGKYFT-VHEYWTDKEAQFFRTN-ATDSTVIEPYNIITSYDLSAGYETGQSNTLKHNFGRVPF 230 (470) T ss_pred CCceEEEEEEEEeeecCCceEEE-EEEEEcCCcEEEEEee-cCcceeccccccccccccccccccccccccccCCCeeeE Confidence 1122111111100000000000 00000 000111100 0000 0000001121 122 Q ss_pred eeccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 201 FILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINR 280 (449) Q Consensus 201 i~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 280 (449) +.|.++ ..|.|.++.+..-+..++.+....+..+-..+...+.++ + .......+... .+.. T Consensus 231 v~~~nn-~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lvl~--------g---~~~~~~~~~~~-------~~~~ 291 (470) T protein:vir:10 231 IEFSKN-KYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVILVLT--------N---YGGADLHQFMN-------DLRK 291 (470) T ss_pred EEeecC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcceeee--------c---CCccccchhhh-------hhhh Confidence 223222 347888888877777777776666555433322222221 1 11111111111 1111 Q ss_pred cccceeec-C----CC--ceEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHHHHHHHH----H Q lcl|Aclame:pro 281 GNDVLMTT-Q----GA--TVTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQ----S 348 (449) Q Consensus 281 ~~~~~l~~-~----~e--d~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~nyyd~I~----~ 348 (449) . +.+.+. . +- +|-+...+..+....++.+.+.|.-.+.+|-.-. ...| |++| -++.-|..+. . T Consensus 292 ~-~~i~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~---~~~g-n~Sg~Alk~~~~~l~~k~~~ 366 (470) T protein:vir:10 292 Y-KSIKINNTGNGDNSGVDKLQIDIPVEARDDALKITRKNIFLFGQGIDPAN---FESS-NASGVAIKMLYSHLELKAAK 366 (470) T ss_pred c-CeEeccCCCCCcCceeEEEeecCChHHHHHHHHHHHHHHHHHhCCCCCCc---cccc-cchHHHHHHHHHHHHHHHHH Confidence 1 111111 1 12 3555566778999999999999999999996322 2223 4555 4443232222 2 Q ss_pred HHHhhhHHHHHHHHHHHH-HhcCC-CCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCcccc-CH-HHHHHH-- Q lcl|Aclame:pro 349 RRVDLSFEIEDFCDKLIE-LKIID-AVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAF-SR-EEIRTA-- 422 (449) Q Consensus 349 ~Qe~~~~p~~~~l~~l~~-~~~~~-~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~-~~-~e~r~~-- 422 (449) ++..+.+.+.+++..++. .+... ...++.+.|++-...+++|.|++..+.+...+.-.-....+-+ ++ +|+... T Consensus 367 ~~~~~~~~l~~~~~~i~~~l~~~~~d~~~i~i~f~~~~p~d~~e~~~~~~~~~g~iS~et~l~~~p~v~D~~~E~eri~~ 446 (470) T protein:vir:10 367 TQTYFEHAINELVRAIMRYLNFSDADKRHISQHWTRTKVEDSLTKAQIVSTVANYSSKEAVAKANPIVDDWQQELKDLAK 446 (470) T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcccceeeEEeccCCCCCHHHHHHHHHHHhccCcHHHHHHhCCCCCCHHHHHHHHHH Confidence 222333434444433332 23322 2347899999999999999999988876554332211122222 33 333211 Q ss_pred -----hcCCCCCCCCCCCCCcchh Q lcl|Aclame:pro 423 -----AGYDNDDEEPLGEEDGDEE 441 (449) Q Consensus 423 -----~~~~~~~~~~~~~~~~~ee 441 (449) ..+.+.-........++|| T Consensus 447 E~~e~~~~~~~~~~~~~~~~dde~ 470 (470) T protein:vir:10 447 DKEENDPYSNQADELNGKGVNDEQ 470 (470) T ss_pred HHHHHHHhhccccccCCCCCCCCC Confidence 1111111111112222222 No 185 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=98.22 E-value=2.4e-06 Score=51.37 Aligned_cols=419 Identities=11% Similarity=0.030 Sum_probs=178.4 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcc-----cccchhcc--CCcccCCHH-----HHHHHHHcCchhHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNK-----RHSAWCEY--GFPELVTYE-----NLYSLYRRGGIAHGAV 68 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~-----r~~~~~~~--~~~~~~~~~-----~l~~~Y~~~~l~r~iV 68 (449) |.+|++--.+.-........-...+ ........ |=..|..+ |.+..+.+. .-..-..+-.++++|+ T Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~I~~w~~~Y~g~~~~~~~~~~~~~~~~~~~~sl~~~~~i~ 80 (517) T protein:vir:98 3 VIQRIKNFFKRGGYALSGQTLKSIN--DHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) T ss_pred hHHHHHHHHHHHHHHhcccchhHhh--cCCceecCHHHHHHHHHHHHHhcCCCcccccccccccccccceeecCcHHHHH Confidence 7777774333211100000000000 00000000 00001110 111111100 0000122347999999 Q ss_pred hhhHHHHhcCCcEEecCCChhhH-H--HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEecCCCc-c----- Q lcl|Aclame:pro 69 EKLVGKCWQTNPEIIEGDDADDS-E--DETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIRDEKD-W----- 138 (449) Q Consensus 69 d~pa~d~~r~~~~i~~~~~~~~~-~--~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~-~----- 138 (449) ...|.=++-+..+|+-++..... + ....-...++++... ++...+.+++..+-..||+++-+.++.+.. + T Consensus 81 ~~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~~~~~I~~v~a 160 (517) T protein:vir:98 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWALA 160 (517) T ss_pred HHhhhhhcCCcceEEecccccccccccchhHHHHHHHHHHHhccHHHHHHHHHHHHhhhCCEEEEEEEeCCeeEEEEEcC Confidence 99999999888888655422111 0 001111234443333 577777777777777788888887753321 1 Q ss_pred --ccccccc-CceeeE-EEeccccCCh--hhhh-----ccccccccCCceeEEeeecccC---CC--------------- Q lcl|Aclame:pro 139 --NLPATKG-RGLQKV-SVSWAGSLKV--AEWD-----TGINSKTYGQPKLWKYTERLPN---GS--------------- 189 (449) Q Consensus 139 --~~Pl~~~-~~l~~i-~v~~~~~i~~--~~~~-----~Dp~s~~yg~P~~y~i~~~~~~---~~--------------- 189 (449) =-|+..+ +++... .++......- ..+. ..+..-.|+. ..|+|...... .. T Consensus 161 d~~~Pl~~~~~~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~-~~y~I~n~ly~s~~~~~lG~~v~L~~~~e~l 239 (517) T protein:vir:98 161 NAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGE-SLYVITNELYKSDNEGEIGKRIPLEELYEGM 239 (517) T ss_pred CeeEEEEecCCCeEEEEEEEEEEEeecCCceEEEEEEEEecCceeccC-CcEEEEEEEEecCCCccccccccccccccCC Confidence 1244332 232211 1111000000 0000 1111111111 12334322210 00 Q ss_pred ccceEE-cccee--eeccC--------CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHh Q lcl|Aclame:pro 190 SRRVDI-HPDRV--FILGD--------YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLAS 258 (449) Q Consensus 190 ~~~~~I-H~SRl--i~~~~--------~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~ 258 (449) ...+.+ +-.|. .+|.. ....|+|++..+.+.+..++.+......-+.. ....+.+. .++.. T Consensus 240 ~~~~~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~e~~~---g~~~i~vp-----~~~l~ 311 (517) T protein:vir:98 240 QEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKM---GQRTVFVS-----DVMLR 311 (517) T ss_pred CcceeECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHh---CCcceecC-----hhhhc Confidence 001112 12221 12211 23469999999999898888876554432211 11111110 11110 Q ss_pred hhccChHHHHHHHHHHHHHHhccccceeec-CCCceEEeeccc--CChHHHHHHHHHHHHhhhcCCceeeeccCccccc- Q lcl|Aclame:pro 259 LYGVSIDELQDKFNEVAGEINRGNDVLMTT-QGATVTPLVTSV--ADPTATYNVNLQTAAAGVDIPTRILIGNQQAERS- 334 (449) Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ed~~~~~~~l--sgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~- 334 (449) ............. ..........+..+ ++.-|+..+..+ ......++.+.+.++..+|+|. --||-...+.. T Consensus 312 ~~~~~~g~~~~~~---~d~~~~~y~~~~~~~~~~~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls~-~t~~~~~~~~kT 387 (517) T protein:vir:98 312 TVPDESGMPPPQV---FDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSV-GTFSFDGRSMKT 387 (517) T ss_pred cccCCCCcccCCC---CCcccceeeeccCCCCCCceeeeccccchHHHHHHHHHHHHHHHHHhCCCc-cccccccccccc Confidence 0000000000000 00000000011111 222366655554 3567778888999999999995 55666555543 Q ss_pred cch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----cC---CCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 335 STE---DQKYFNARCQSRRVDLSFEIEDFCDKLIELK-----II---DAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQ 403 (449) Q Consensus 335 s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~-----~~---~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~ 403 (449) +|| ..+.-|.+++++|..+.+.+.+++..++..+ .+ ..+.+++|.|.+-...+.++.++...+ T Consensus 388 ATEi~s~~~~~~~t~~~~~~~~~~aL~~lv~~i~~l~~~~~~~~~~~~~~~~v~v~f~D~i~~D~~~~~~~~~~------ 461 (517) T protein:vir:98 388 ATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQ------ 461 (517) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEcCCCCCCCHHHHHHHHHH------ Confidence 455 4566788999988877666666665544321 11 123468999999999998877665543 Q ss_pred HHHHcCCcc---------ccCHHHHHHHhc---CCCCCCCC-------CCCCCcchh Q lcl|Aclame:pro 404 TMLGSGDNP---------AFSREEIRTAAG---YDNDDEEP-------LGEEDGDEE 441 (449) Q Consensus 404 ~~~~~g~~~---------~~~~~e~r~~~~---~~~~~~~~-------~~~~~~~ee 441 (449) ++.+|.++ -++.+|+++.+. -+.....+ .....+||| T Consensus 462 -~v~aG~ms~~~~i~~~~g~~eeeA~~e~~~i~~E~~~~~~~~~~~~~~~~~~gd~e 517 (517) T protein:vir:98 462 -AKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) T ss_pred -HHhcCCCCHHHHHHHhCCCChHHHHHHHHHHHHhccccCCCCccccccCCCCCCCC Confidence 33444322 245555544321 01111111 111222222 No 186 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=98.13 E-value=4e-06 Score=50.18 Aligned_cols=395 Identities=10% Similarity=0.055 Sum_probs=168.5 Q ss_pred Cchh-------hHHHHHhhhHHHHHHHHHHHHH-HHHhhcCccc-ccchhccCCcccCCHHHH-HHHHHcCchhHHHHhh Q lcl|Aclame:pro 1 MTDK-------LTLAVNHALNDARMARARMGLM-VPTMGLDNKR-HSAWCEYGFPELVTYENL-YSLYRRGGIAHGAVEK 70 (449) Q Consensus 1 ~~~~-------~~~~v~~~~~~~~~~~~~~~~~-~~~~g~~t~r-~~~~~~~~~~~~~~~~~l-~~~Y~~~~l~r~iVd~ 70 (449) |..= ++..+...-.+..++..+..+. ++..|+...| .........+....+.+| +.|-.++.-...++.+ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~edm~e~D~~i~s~l~~ 80 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) T ss_pred CCeeeCCCCCccCccccchhhhhhhhhhhhhcccCCCCCcCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 2211 0000000001111222222222 1222222111 011122111221111222 2233345666666666 Q ss_pred hHHHHhcCCcEEecCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCc Q lcl|Aclame:pro 71 LVGKCWQTNPEIIEGDD--ADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRG 147 (449) Q Consensus 71 pa~d~~r~~~~i~~~~~--~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~ 147 (449) --.-.+..-|+|..+.+ .++.+....++..+..+ .-|..+...+-.+.+||+|++=|.-+ ++..+ . T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~---~~~~~~i~~~ldA~~~G~s~~Ei~w~~~~g~~--------~ 149 (526) T protein:vir:79 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDL---EGLEDLLLDALDGIGHGYSCIELEWALQGREW--------M 149 (526) T ss_pred HHHHHhCCCceEecCCCCChHHHHHHHHHHHHHhcc---cCHHHHHHHHHhhhhhcceeEEEEEeecCCce--------e Confidence 66666666667765432 22333333333333322 11334444444577899999877553 21111 1 Q ss_pred eeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeecc----CCCCCcchhHHHHHHHHHH Q lcl|Aclame:pro 148 LQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILG----DYSEDAIGFLEPAYNAFVS 223 (449) Q Consensus 148 l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~----~~~~~G~s~l~~~~~~l~~ 223 (449) +..|. ++.+ .....|+.. ..+ ..+. ++...+..+++-+.+.+. .+..+|.++++.||....- T Consensus 150 ~~~l~--~r~~---~~F~~~~~~----~~~-l~~~----~~~~~g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~f 215 (526) T protein:vir:79 150 PLAFH--HRPQ---SWFQLNPED----QNE-LRLR----DNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLF 215 (526) T ss_pred EEEee--eecc---cceEeccCC----CcE-EEec----CCCCCceeecCCceEEEeecCCcCCccccchHHHHHHHHHH Confidence 12222 2211 111112111 100 1111 112234555555554443 3456789999999886542 Q ss_pred HHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeecccCCh Q lcl|Aclame:pro 224 LEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSVADP 303 (449) Q Consensus 224 ~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~lsgl 303 (449) -..+..-++.-+-+...-....++ .....++..+.+.+.+..+.+ ...+++..+.+++.++.+=+|. T Consensus 216 K~~~~~~w~~F~E~yG~P~~igky------------~~~a~~~ek~~L~~av~~i~~-da~~iiP~~~~ie~~ea~~~~~ 282 (526) T protein:vir:79 216 RHYATSDLAEMLEIYGLPIRLGKY------------PPGTADEEKATLLRAVTGLGH-AAAGIIPETMAIDFQQAAQGSS 282 (526) T ss_pred HHhhHHHHHHHHHHcCCceEEEec------------CCCCCHHHHHHHHHHHHHHhc-CcEEEecCCceeEEeecCCCCH Confidence 222222222211111111111111 011233444555556666644 3457778888999998764443 Q ss_pred ---HHHHHHHHHHHHhhhcCCceeeeccC------ccccc--cchh--HHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhc Q lcl|Aclame:pro 304 ---TATYNVNLQTAAAGVDIPTRILIGNQ------QAERS--STED--QKYFNARCQSRRVDLSFEIED-FCDKLIELKI 369 (449) Q Consensus 304 ---~d~~~~~~~~iaaas~IP~t~L~Gqs------~gg~~--s~eD--~~nyyd~I~~~Qe~~~~p~~~-~l~~l~~~~~ 369 (449) ..+++..-.+||-+ ++||. .|+.+ +-++ .....+.+.+....+..-+.+ ++..|+...+ T Consensus 283 ~~f~~li~~~d~~Isk~-------iLGqtlTs~~~~g~~gS~a~g~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~ 355 (526) T protein:vir:79 283 EPFLAMMRQSEDAISKA-------VLGGTLTSTTSQSGGGAFALGQVHNEVRHDILASDARQLAATLSRDLLWPLLVLNR 355 (526) T ss_pred HHHHHHHHHHHHHHHHH-------HhhhhhccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Confidence 34444455555532 34431 12111 2122 344566666665555555653 6667777777 Q ss_pred CCCCC---CceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC-CCCC-CCCc---chh Q lcl|Aclame:pro 370 IDAVA---KKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE-EPLG-EEDG---DEE 441 (449) Q Consensus 370 ~~~~~---~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~-~~~~-~~~~---~ee 441 (449) +...+ --.|+|..- |..++ ++.|++++++++.|. .++.+.+++..+++.+.+ ++.. .... ... T Consensus 356 ~~~~~~~~~p~~~~~~~------e~eDl-~~~a~~~~~L~~~G~--~i~~~~i~e~~gip~~~~~e~~l~~~~~~~~~~~ 426 (526) T protein:vir:79 356 PGSPDVRRAPRLVFDLR------EQADI-TSMAQSIPALVNVGL--EIPSAWVYDKLGIPQPAKNEPVLRPAAQPAILSR 426 (526) T ss_pred CCcCCccccceEEeCCC------CcccH-HHHHHHHHHHHhCCC--cCCHHHHHHHhCCCCCCCchhhccccCCcccccc Confidence 64321 124455332 22222 457889999999883 368899999998854432 1110 0000 000 Q ss_pred hcccccCC Q lcl|Aclame:pro 442 DKATDSAA 449 (449) Q Consensus 442 ~~~~~~~a 449 (449) ......++ T Consensus 427 ~~~~~~~~ 434 (526) T protein:vir:79 427 QHGQRVAA 434 (526) T ss_pred cccccccc Confidence 00000000 No 187 >protein:vir:7208 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049782;genbank:gi:9632594;genbank:GeneID:1258582 Probab=98.08 E-value=4.8e-06 Score=49.72 Aligned_cols=413 Identities=14% Similarity=0.098 Sum_probs=181.8 Q ss_pred CchhhHHHH-HhhhHHHHHHHHHHHHHHHHhhcCcccccchhccC-C-cccCCHHHHHHHHHc---CchhHHHHhhhHHH Q lcl|Aclame:pro 1 MTDKLTLAV-NHALNDARMARARMGLMVPTMGLDNKRHSAWCEYG-F-PELVTYENLYSLYRR---GGIAHGAVEKLVGK 74 (449) Q Consensus 1 ~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~-~-~~~~~~~~l~~~Y~~---~~l~r~iVd~pa~d 74 (449) +.+++.+-| -.....+.-.....++. ..|.+. .....+| + +...+-.+|-..||+ ++.+..+|+.++.| T Consensus 24 ~~~~~~S~~~p~~~Dga~e~~~~~~~~--a~~~~g---~~~~~~g~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVne 98 (524) T protein:vir:72 24 EKEDLVSITAPKLDDGAREFEVSSNEA--ASPYNA---AFQTIFGSYEPGMKTTRELIDTYRNLMNNYEVDNAVSEIVSD 98 (524) T ss_pred hccCCccccCccCCCCceeeeeccccc--ccccce---eeeehhcccccccchHHHHHHHHHHHhhccchhhHHHHhhcc Confidence 333332111 11111111000000000 000000 0001111 1 123456788888876 78899999999999 Q ss_pred HhcC-----CcEEecCCChhh-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCc Q lcl|Aclame:pro 75 CWQT-----NPEIIEGDDADD-SEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRG 147 (449) Q Consensus 75 ~~r~-----~~~i~~~~~~~~-~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~ 147 (449) |+-. .+.+.- ++.+- ......|-.+.+.+.. .++.++..+..|.--+.|--++-..+ |.+.+ .+| T Consensus 99 aiv~d~~~~pV~l~L-~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKii-d~k~p------k~G 170 (524) T protein:vir:72 99 AIVYEDDTEVVALNL-DKSKFSPKIKNMMLDEFSDVLNHLSFQRKGSDHFRRWYVDSRIFFHKII-DPKRP------KEG 170 (524) T ss_pred eeEecCCCceEEEEe-cCcCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEE-eCCCc------ccc Confidence 8632 112211 11110 1111122222222211 14455655665543444433333333 33332 236 Q ss_pred eeeEEEeccccCChh-hhhccccc--cccCC-ceeEEeeeccc--------CCCccceEEccceeeeccC-CC-----CC Q lcl|Aclame:pro 148 LQKVSVSWAGSLKVA-EWDTGINS--KTYGQ-PKLWKYTERLP--------NGSSRRVDIHPDRVFILGD-YS-----ED 209 (449) Q Consensus 148 l~~i~v~~~~~i~~~-~~~~Dp~s--~~yg~-P~~y~i~~~~~--------~~~~~~~~IH~SRli~~~~-~~-----~~ 209 (449) |..++-+++..+... ...+++.. ..+.. -++|..++... ..++++++||.+= |+|.. +- .- T Consensus 171 I~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~y~~~g~~~~~~~~ikI~~dA-I~y~hSGL~d~~~~~ 249 (524) T protein:vir:72 171 IKELRRLDPRQVQYVREIITETEAGTKIVKGYKEYFIYDTAHESYACDGRMYEAGTKIKIPKAA-VVYAHSGLVDCCGKN 249 (524) T ss_pred ceeeeeeCCccceeeeeeccCCCccchhhcchhhheeeccCccccccCccccCCCcceecchhh-eeeeeccceeCCCCc Confidence 666655555555321 11111111 11111 11222221110 1234567777774 33421 11 11 Q ss_pred cchhHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhhccChHHHHHHHHHHHHHHhc--- Q lcl|Aclame:pro 210 AIGFLEPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLYGVSIDELQDKFNEVAGEINR--- 280 (449) Q Consensus 210 G~s~l~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--- 280 (449) =.|.|.++ +|.|+-++.+ -.+|+- ....++.+ ++-+|+... .++- ++.++..+.+ T Consensus 250 i~gyLhkAiKp~NQLkmlEDA-----lVIYRi-----tRAPeRRvFYIDvGnlPk~K---AeqY---l~~im~k~KNklv 313 (524) T protein:vir:72 250 IIGYLHRAVKPANQLKLLEDA-----VVIYRI-----TRAPDRRVWYVDTGNMPARK---AAEH---MQHVMNTMKNRVV 313 (524) T ss_pred eeccchhhhHhHHhhhHHHhh-----HHHHhh-----hccccceEEEEecCCCCchh---HHHH---HHHHHHhcCceeE Confidence 23566553 3344433332 122321 11222221 223333221 1211 1122211110 Q ss_pred ---cccc-------e-e----------ecCCCceEEeec--ccCChHHHHHHHHHHHHhhhcCCceeeeccCcccc---c Q lcl|Aclame:pro 281 ---GNDV-------L-M----------TTQGATVTPLVT--SVADPTATYNVNLQTAAAGVDIPTRILIGNQQAER---S 334 (449) Q Consensus 281 ---~~~~-------~-l----------~~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~---~ 334 (449) .++- + + -+.+.|++++.. +|+-++|+ ..|...+=-|.++|+++|-+.++||+ . T Consensus 314 YDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV-~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr 392 (524) T protein:vir:72 314 YDASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTLPGADNTGNMEDI-RWFRQALYMALRVPLSRIPQDQQGGVMFDS 392 (524) T ss_pred EeCCCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChHHHH-HHHHHHHHHHhCCchhhcCCCCCccccccc Confidence 0000 0 0 023456777744 56667765 68889999999999999976665544 3 Q ss_pred cch---hHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcCCC------CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 335 STE---DQKYFNARCQSRRVDLSFEIEDFCD-KLIELKIIDA------VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQT 404 (449) Q Consensus 335 s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~-~l~~~~~~~~------~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~ 404 (449) ++| |.-.|...|.++|..+..-..+.|. .|++-+...+ ..++.|+|.-=..-+|-..+|+...+..+++. T Consensus 393 ~~EItRDEikF~KFI~rLR~rFs~~f~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~ 472 (524) T protein:vir:72 393 GTSITRDELTFAKFIRELQHKFEEVFLDPLKTNLLLKGIITEDEWNDEINNIKIEFHRDSYFAELKEAEILERRINMLTM 472 (524) T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHH Confidence 455 8889999999999877665666665 3555555543 24789999999999999999999999888776 Q ss_pred HHHcCC-----------ccccCHHHHHHHh-cCCCCCCCCCCCCCcchhhccc Q lcl|Aclame:pro 405 MLGSGD-----------NPAFSREEIRTAA-GYDNDDEEPLGEEDGDEEDKAT 445 (449) Q Consensus 405 ~~~~g~-----------~~~~~~~e~r~~~-~~~~~~~~~~~~~~~~ee~~~~ 445 (449) +-.-.. +--.|.+|+-+.. .++....++.-..+++| +.+. T Consensus 473 ~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~~~~~-~~~f 524 (524) T protein:vir:72 473 AEPFIGKYISHRTAMKDILQMTDEEIEQEAKQIEEESKEARFQDPDQE-QEDF 524 (524) T ss_pred hhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCchh-hhcC Confidence 532110 0012444443221 01111111111111111 0111 No 188 >protein:vir:103458 Length: 524 # NCBI annotation: portal vertex of the head # Family: family:all:1036 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803110;genbank:gi:116326390;genbank:GeneID:4405487 Probab=98.08 E-value=5e-06 Score=49.66 Aligned_cols=413 Identities=15% Similarity=0.102 Sum_probs=181.8 Q ss_pred CchhhHHHH-HhhhHHHHHHHHHHHHHHHHhhcCcccccchhccC-C-cccCCHHHHHHHHHc---CchhHHHHhhhHHH Q lcl|Aclame:pro 1 MTDKLTLAV-NHALNDARMARARMGLMVPTMGLDNKRHSAWCEYG-F-PELVTYENLYSLYRR---GGIAHGAVEKLVGK 74 (449) Q Consensus 1 ~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~-~-~~~~~~~~l~~~Y~~---~~l~r~iVd~pa~d 74 (449) +.+|+.+-| -.....+.-.....++. ..|.+. .....+| + +...+-.+|-..||+ ++.+..+|+.++.| T Consensus 24 ~~~~~~S~~~p~~~Dga~e~~~~~~~~--a~~~~g---~~~~~~g~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVne 98 (524) T protein:vir:10 24 EKEDLVSITAPKLDDGAREFEVSSNEA--ASPYNA---AFQTIFGSYEPGMKTTRELIDTYRNLMNNYEVDNAVSEIVSD 98 (524) T ss_pred hccCCccccCccCCCCceeeeeccccc--ccccce---eeeehhcccccccchHHHHHHHHHHHhhccchhhHHHHhhcc Confidence 333332111 11111111000000000 000000 0001111 1 123456788888876 78899999999999 Q ss_pred HhcC-----CcEEecCCChhh-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCc Q lcl|Aclame:pro 75 CWQT-----NPEIIEGDDADD-SEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRG 147 (449) Q Consensus 75 ~~r~-----~~~i~~~~~~~~-~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~ 147 (449) |+-. .+.+.- ++.+- ......|-.+.+.+.. .++.++..+..|.--+.|--++-..+ |.+.+ .+| T Consensus 99 aiv~d~~~~pV~l~L-~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKii-d~k~p------k~G 170 (524) T protein:vir:10 99 AIVYEDDTEVVALNL-DKSKFSPKIKNMMLDEFNDVLNHLSFQRKGSDHFRRWYVDSRIFFHKII-DPKRP------KEG 170 (524) T ss_pred eeEecCCCceEEEEe-cCcCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEe-eCCCc------ccc Confidence 8632 112211 11110 1111122222222211 14455655665543444433333333 33322 246 Q ss_pred eeeEEEeccccCChh-hhhccccc--cccCC-ceeEEeeeccc--------CCCccceEEccceeeeccC-CC-----CC Q lcl|Aclame:pro 148 LQKVSVSWAGSLKVA-EWDTGINS--KTYGQ-PKLWKYTERLP--------NGSSRRVDIHPDRVFILGD-YS-----ED 209 (449) Q Consensus 148 l~~i~v~~~~~i~~~-~~~~Dp~s--~~yg~-P~~y~i~~~~~--------~~~~~~~~IH~SRli~~~~-~~-----~~ 209 (449) |..++-+++..+... ...+++.. ..+.. -++|..++... ..++++++||.+= |+|.. +- .- T Consensus 171 I~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~y~~~g~~~~~~~~ikI~~dA-I~y~hSGL~d~~~~~ 249 (524) T protein:vir:10 171 IKELRRLDPRQVQYVREIITETEAGTKIVKGYKEYFIYDTAHESYACDGRMYEAGTKIKIPKAA-IVYAHSGLVDCCGKN 249 (524) T ss_pred ceeeeeeCCccceeeeeeccCCCccchhhcchhhheeeccCccccccCccccCCCcceecchhh-eeeeeccceeCCCCc Confidence 666655555555321 11111111 11111 11222221110 1234567777774 33431 11 11 Q ss_pred cchhHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhhccChHHHHHHHHHHHHHHhc--- Q lcl|Aclame:pro 210 AIGFLEPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLYGVSIDELQDKFNEVAGEINR--- 280 (449) Q Consensus 210 G~s~l~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--- 280 (449) =.|.|.++ +|.|+-++.+ -.+|+- ....++.+ ++-+|+... .++- ++.++..+.+ T Consensus 250 i~gyLhkAiKp~NQLkmlEDA-----lVIYRi-----tRAPeRRvFYIDvGnlPk~K---AeqY---l~~im~k~KNklv 313 (524) T protein:vir:10 250 IIGYLHRAVKPANQLKLLEDA-----VVIYRI-----TRAPDRRVWYVDTGNMPARK---AAEH---MQHVMNTMKNRVV 313 (524) T ss_pred eeccchhhhHHHHhhhHHHhh-----HHHHhh-----hccccceEEEEecCCCCchh---HHHH---HHHHHHhcCceeE Confidence 23566553 3344433332 122321 11222221 223333221 1211 1122211110 Q ss_pred ---cccc-------e-e----------ecCCCceEEeec--ccCChHHHHHHHHHHHHhhhcCCceeeeccCcccc---c Q lcl|Aclame:pro 281 ---GNDV-------L-M----------TTQGATVTPLVT--SVADPTATYNVNLQTAAAGVDIPTRILIGNQQAER---S 334 (449) Q Consensus 281 ---~~~~-------~-l----------~~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~---~ 334 (449) .++- + + -+.+.|++++.. +|+-++|+ ..|...+=-|.++|+++|-+.++||+ . T Consensus 314 YDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV-~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr 392 (524) T protein:vir:10 314 YDASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTLPGADNTGNMEDV-RWFRQALYMALRVPLSRIPQDQQGGVMFDS 392 (524) T ss_pred EeCCCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChHHHH-HHHHHHHHHHhCCchhhcCCCCCccccccc Confidence 0000 0 0 023456777744 56667765 68889999999999999976665544 3 Q ss_pred cch---hHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcCCC------CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 335 STE---DQKYFNARCQSRRVDLSFEIEDFCD-KLIELKIIDA------VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQT 404 (449) Q Consensus 335 s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~-~l~~~~~~~~------~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~ 404 (449) ++| |.-.|...|.++|..+..-..+.|. .|++-+...+ ..++.|+|.-=..-+|-..+|+...+..+++. T Consensus 393 ~~EItRDEikF~KFI~rLR~rFs~~f~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~ 472 (524) T protein:vir:10 393 GTSITRDELTFAKFIRELQHKFEEVFLDPLKTNLLLKGIITEDEWNDEINNIKIEFHRDSYFTELKEAEILERRINMLTM 472 (524) T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHH Confidence 455 8889999999999877665666665 3555555543 24789999999999999999999999888776 Q ss_pred HHHcCC-----------ccccCHHHHHHHh-cCCCCCCCCCCCCCcchhhccc Q lcl|Aclame:pro 405 MLGSGD-----------NPAFSREEIRTAA-GYDNDDEEPLGEEDGDEEDKAT 445 (449) Q Consensus 405 ~~~~g~-----------~~~~~~~e~r~~~-~~~~~~~~~~~~~~~~ee~~~~ 445 (449) +-.-.. +--.|.+|+-+.. .++....++.-..+++|+ .+. T Consensus 473 ~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~~~~~~-~~f 524 (524) T protein:vir:10 473 AEPFIGKYISHRTAMKDILQMTDEEIEQEAKQIEEESKEARFQDPDQEQ-EDF 524 (524) T ss_pred hhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCchhh-hcC Confidence 532110 0012444443221 011111111111111111 111 No 189 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=97.99 E-value=8e-06 Score=48.51 Aligned_cols=420 Identities=10% Similarity=-0.012 Sum_probs=168.4 Q ss_pred Cchh-hHHHHHhhhHHHHHHHHHHH-HHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDK-LTLAVNHALNDARMARARMG-LMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~-~~~~v~~~~~~~~~~~~~~~-~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) |+.. +.--++.-.....-...++. +..+....-..++......+.+ +..-..++++.||+..+.=++-+ T Consensus 22 l~~~~i~~li~~~~~~~~~r~~~l~~YY~g~~~~i~~~~~~~~~~~~~---------~~ki~~n~~~~Iv~~~~~~l~G~ 92 (506) T protein:vir:94 22 LTPNKIMKFITHHFNYQRPRLEMLDDYYQGYNLKILDKQSRRHEDGKA---------DHRATHSFAKYIADFQTSYSVGN 92 (506) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccCC---------cceeecchHHHHHHHhhhhhccc Confidence 3332 33223221111110001111 1111100000111110000000 11235689999999999999999 Q ss_pred CcEEecCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccC---------- Q lcl|Aclame:pro 79 NPEIIEGDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGR---------- 146 (449) Q Consensus 79 ~~~i~~~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~---------- 146 (449) ++++...++... ..+++++.. ++...+.++.+.+..+|.|++++.++. |...-..+++.. T Consensus 93 p~~~~~~d~~~~--------~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~ded~~~~i~~~~p~~~~~v~dd~~~ 164 (506) T protein:vir:94 93 PINVKLPDDGSN--------SGFDTFNKANDVDAENYDLFLDMSRYGRAYEYVYRGEDNEEHLAKLDPLDTFVIYSTDVD 164 (506) T ss_pred CceeecCcchHH--------HHHHHHHhccCHhHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcccceEEEecCCCC Confidence 998865543322 123333222 455667777777888999999999853 322212222211 Q ss_pred -ceeeEEEeccccCChhhhhccccc-----cccCCce-eEEeeecccCCCccceEEccce---eeeccCCCCCcchhHHH Q lcl|Aclame:pro 147 -GLQKVSVSWAGSLKVAEWDTGINS-----KTYGQPK-LWKYTERLPNGSSRRVDIHPDR---VFILGDYSEDAIGFLEP 216 (449) Q Consensus 147 -~l~~i~v~~~~~i~~~~~~~Dp~s-----~~yg~P~-~y~i~~~~~~~~~~~~~IH~SR---li~~~~~~~~G~s~l~~ 216 (449) .+.....+|..... ..+... ..++.+. .|.......+.......-|+-- |+.|.++ ..|.|.++. T Consensus 165 ~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~yt~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~-~~~~sd~e~ 239 (506) T protein:vir:94 165 PKPIMAVRYHQIELV----DDNQVSTINYVPETWTADTYTLYNPTPIMGKMQVDTTKPITTFPVVEFKNS-NFRLGDFEN 239 (506) T ss_pred CceEEEEEEEeeeec----cCCceeEEEEEEEEEeCceEEEeccccCccceeccccccCCccceEEecCC-CCCCCchhh Confidence 11111111110000 000000 0001111 1111110000000011124433 2333322 236777777 Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhH--HHHHhhhcc----ChHHHHHHHHHHHHHHhccccceeec-- Q lcl|Aclame:pro 217 AYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDF--TNLASLYGV----SIDELQDKFNEVAGEINRGNDVLMTT-- 288 (449) Q Consensus 217 ~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~--~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~-- 288 (449) +..-+..++.+....+..+-..+...+.+.-...... ..+...... +...........+..+.... .+.+. T Consensus 240 ~~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 318 (506) T protein:vir:94 240 VLPLIDLYDAAQSDTANYMTDLNEAMLIIQGDIDTLFEGSDMMNTIDPNDEDAMAKLAKDKLELIKEMKDAN-MLLLKSG 318 (506) T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCccccccchhccccccccccccccccccchhHHHhhhhhcC-eeeeccc Confidence 7776666666655555443322222222211000000 000000000 00000000111111221111 11111 Q ss_pred -------CCCc--eEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccchh-HHH-H---HHHHHHHHHhhh Q lcl|Aclame:pro 289 -------QGAT--VTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-QKY-F---NARCQSRRVDLS 354 (449) Q Consensus 289 -------~~ed--~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~eD-~~n-y---yd~I~~~Qe~~~ 354 (449) .+-+ |-..+.+..+....++.+.+.|...+++|-.- ...-+| +++++ ++. | ...++.+|..+. T Consensus 319 ~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~--~~~~~~-n~Sg~Aik~~~~~l~~k~~~k~~~~~ 395 (506) T protein:vir:94 319 MTVNGTQTSVDAKYINKTYDVVGSEAYKKRVAGDIHKFSHTPDLT--DENFAS-NSSGVAMQYKVLGTVELASTKRRMFE 395 (506) T ss_pred ccccCccccccceeeeecCCHHHHHHHHHHHHHHHHHHhCccccc--cccccc-cchHHHHHHHHHHHHHHHHHHHHHHH Confidence 1123 34455677899999999999999999999621 222223 34443 332 2 233444444444 Q ss_pred HHHHHHHHHHHHH-h--cCCC---CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccC-H-HHHH---HHh Q lcl|Aclame:pro 355 FEIEDFCDKLIEL-K--IIDA---VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFS-R-EEIR---TAA 423 (449) Q Consensus 355 ~p~~~~l~~l~~~-~--~~~~---~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~-~-~e~r---~~~ 423 (449) ..+.+++..++.. + -+.. ..++++.|+|-...++.|.|++..+.+..++.-......+-++ + +|+. ++- T Consensus 396 ~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl~g~iS~et~~~~lp~v~d~~~E~~ri~~E~ 475 (506) T protein:vir:94 396 RGLYARYQIISDIENSIHGDWTFDPQELTFTFRDNLPADNISQIKALVQAGATLPQKYLYQQLPGVTNPQDIVDMMKEQS 475 (506) T ss_pred HHHHHHHHHHHHHHHhcCCccccccccceEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHH Confidence 4455554433322 1 1111 1357899999999999999998877653332211111122222 2 2321 111 Q ss_pred -----cCCC---CCCCCCCCCCcchhhcccc Q lcl|Aclame:pro 424 -----GYDN---DDEEPLGEEDGDEEDKATD 446 (449) Q Consensus 424 -----~~~~---~~~~~~~~~~~~ee~~~~~ 446 (449) .++. ..+....++.+++.+++.. T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 506 (506) T protein:vir:94 476 ANGDYSFDQNGVISNDGQTNTTATQTDEEVR 506 (506) T ss_pred HHHhhcchhhcCCCcccCccccccccccCCC Confidence 0100 0011111222222222222 No 190 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=97.96 E-value=9.1e-06 Score=48.21 Aligned_cols=395 Identities=10% Similarity=0.065 Sum_probs=173.0 Q ss_pred Cchhh-------HHHHHhhhHHHHHHHHHHHHH-HHHhhcCccc-ccchhccCCcccCCHHHHH-HHHHcCchhHHHHhh Q lcl|Aclame:pro 1 MTDKL-------TLAVNHALNDARMARARMGLM-VPTMGLDNKR-HSAWCEYGFPELVTYENLY-SLYRRGGIAHGAVEK 70 (449) Q Consensus 1 ~~~~~-------~~~v~~~~~~~~~~~~~~~~~-~~~~g~~t~r-~~~~~~~~~~~~~~~~~l~-~~Y~~~~l~r~iVd~ 70 (449) |..=| +..+-..-.++.++..+..+. .+..|+...| +.............+.+|. .|.+++.-...++.+ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iLr~a~~gd~~~~~~L~e~m~e~D~~i~s~l~~ 80 (526) T protein:vir:99 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCcCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 22111 100000001122222233322 1233332212 1122222222222222232 344467777778887 Q ss_pred hHHHHhcCCcEEecCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCc Q lcl|Aclame:pro 71 LVGKCWQTNPEIIEGDD--ADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRG 147 (449) Q Consensus 71 pa~d~~r~~~~i~~~~~--~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~ 147 (449) --.-.+..-|+|..+.+ .++.+....++..+..+ .-|..+...+-.+.+||+|++=+.-+ ++..+ . T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~---~~~~~~i~~~lda~~~G~s~~Eivw~~~~g~~--------~ 149 (526) T protein:vir:99 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDL---EGLEDLLLDALDGIGHGYSCIELEWALQGREW--------M 149 (526) T ss_pred HHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcc---cCHHHHHHHHHHhhhhcceeEEEEEeecCCce--------e Confidence 77777777777765432 22332233333333222 11333444444577899999877553 22111 1 Q ss_pred eeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeecc----CCCCCcchhHHHHHHHHHH Q lcl|Aclame:pro 148 LQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILG----DYSEDAIGFLEPAYNAFVS 223 (449) Q Consensus 148 l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~----~~~~~G~s~l~~~~~~l~~ 223 (449) +..+. |+.+ .....|+. +... +.+. ++...+..+++.+.+.+. .+..+|.++++.||....- T Consensus 150 ~~~l~--~r~~---~~f~~~~~----~~~~-l~~~----~~~~~g~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~f 215 (526) T protein:vir:99 150 PLAFH--HRPQ---SWFQLNPE----DQNE-LRLR----DNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLF 215 (526) T ss_pred EEEee--eecc---cceeeccC----CCcE-EEec----CCCCCceeecCCCeEEEeecCCcCCccccchHHHHHHHHHH Confidence 22222 2211 11111211 1111 1111 122334556666555543 3456789999999886543 Q ss_pred HHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeecccCCh Q lcl|Aclame:pro 224 LEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSVADP 303 (449) Q Consensus 224 ~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~lsgl 303 (449) -.....-++.-+-+...-....++ .....++..+.+.+.+..+.+. ..+++..+.+++.++.+=+|. T Consensus 216 K~~~~~~w~~f~E~yG~P~~igky------------~~~a~~~ek~~L~~av~~i~~d-~~~iiP~~~~ie~~ea~~~~~ 282 (526) T protein:vir:99 216 RHYATSDLAEMLEIYGLPIRLGKY------------PPGTADEEKATLLRAVTGLGHA-AAGIIPETMAIDFQQAAQGSS 282 (526) T ss_pred HHhhHHHHHHHHHHcCCceEEEec------------CCCCCHHHHHHHHHHHHHHhhC-cEEEecCCceeEEeecCCCCH Confidence 222222222222111111111111 0112344445555556665443 457778888999988764443 Q ss_pred ---HHHHHHHHHHHHhhhcCCceeeeccC------ccccc--cchh--HHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhc Q lcl|Aclame:pro 304 ---TATYNVNLQTAAAGVDIPTRILIGNQ------QAERS--STED--QKYFNARCQSRRVDLSFEIED-FCDKLIELKI 369 (449) Q Consensus 304 ---~d~~~~~~~~iaaas~IP~t~L~Gqs------~gg~~--s~eD--~~nyyd~I~~~Qe~~~~p~~~-~l~~l~~~~~ 369 (449) ..+++..-.+||- .++||. .|+.+ +-++ .....+.+.+....+..-+.+ ++..|+...+ T Consensus 283 ~~f~~li~~~d~~Isk-------~iLGqtlTs~~~~g~~gS~a~g~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~ 355 (526) T protein:vir:99 283 EPFLAMMRQSEDAISK-------AVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNR 355 (526) T ss_pred HHHHHHHHHHHHHHHH-------HHhhhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Confidence 3444445555553 234531 12111 2122 344555555555555555643 6666777776 Q ss_pred CCCCC---CceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCC-CC-CCCCCcc---hh Q lcl|Aclame:pro 370 IDAVA---KKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE-EP-LGEEDGD---EE 441 (449) Q Consensus 370 ~~~~~---~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~-~~-~~~~~~~---ee 441 (449) +...+ --.|+|..--+. ++ ++.|++++++++.|. .++.+++++..|++.+.+ ++ +...... .. T Consensus 356 ~~~~~~~~~p~~~~~~~e~e------Dl-~~~a~~~~~L~~~G~--~i~~~~i~e~~Gip~~~~~e~~l~~~~~~~~~~~ 426 (526) T protein:vir:99 356 PGSPDVRRAPRLVFDLREQA------DI-TSMAQSIPALVNVGL--EIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSR 426 (526) T ss_pred CCcCCccccceEEeCCCCcc------cH-HHHHHHHHHHHhCCC--ccCHHHHHHHhCCCCCCCcccccCCCCCCccccc Confidence 64321 224555443222 22 357888999999883 368899999998854332 11 1100000 00 Q ss_pred hcccccCC Q lcl|Aclame:pro 442 DKATDSAA 449 (449) Q Consensus 442 ~~~~~~~a 449 (449) ......++ T Consensus 427 ~~~~~~~~ 434 (526) T protein:vir:99 427 QHGQRVAA 434 (526) T ss_pred cccccccc Confidence 00000000 No 191 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=97.92 E-value=1.1e-05 Score=47.76 Aligned_cols=403 Identities=11% Similarity=-0.008 Sum_probs=161.3 Q ss_pred Cchhh------------HHHHHhhhH-HHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHH Q lcl|Aclame:pro 1 MTDKL------------TLAVNHALN-DARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGA 67 (449) Q Consensus 1 ~~~~~------------~~~v~~~~~-~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~i 67 (449) |-++| .-.+++-.. ..+... -..+..+. +..-. +...........-...+++.| T Consensus 5 ~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~-l~~Yy~g~-------~~i~~-----~~~~~~~~~~~ki~~n~~~~I 71 (499) T protein:vir:10 5 IDKDLLDDVNEPNIEAINYAIRELQNRKKRLDK-LSDYYNGK-------QEIEK-----HEFDNATVEAANVMVNHAKYI 71 (499) T ss_pred hhhhHHhhhhcCCHHHHHHHHHHHHHHHHHHHH-HHHHhccc-------cchhc-----CCcCcCCCCcceeecchHHHH Confidence 22222 111111111 011111 11111110 00000 000001111122245789999 Q ss_pred HhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEecC-CCcccccc--- Q lcl|Aclame:pro 68 VEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPA--- 142 (449) Q Consensus 68 Vd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl--- 142 (449) |+..+.=++-+++++...++.... . +.++.. .++..++.++.+.+..||.|++++.++. |..+..+. T Consensus 72 v~~~~~~l~g~p~~~~~~~~~~~~----~----l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~~~~~ 143 (499) T protein:vir:10 72 TDMNVGFMTGNPVKYVAEKGKNID----D----ILEVFNQIDIHKHDIELEKDLSVFGYGYELLYLKKTDPISVRDELGN 143 (499) T ss_pred HHHHhhhhcccCceeecCChhHHH----H----HHHHHhhcCHhHHHHHHHHHHHhcCceEEEEEecccccccccccccc Confidence 999999999999987654432221 1 222222 2566678888889999999999998863 32221111 Q ss_pred --cccCceeeEEEeccccCChh-------------hhhcccc--------ccccCCce-eEEeeecccC-----CCccce Q lcl|Aclame:pro 143 --TKGRGLQKVSVSWAGSLKVA-------------EWDTGIN--------SKTYGQPK-LWKYTERLPN-----GSSRRV 193 (449) Q Consensus 143 --~~~~~l~~i~v~~~~~i~~~-------------~~~~Dp~--------s~~yg~P~-~y~i~~~~~~-----~~~~~~ 193 (449) .+...-..+.++++.+..+- .+..... ....+.|. .|.......+ ...... T Consensus 144 ~~~~~~~~~~~~~v~p~~~~~v~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~ 223 (499) T protein:vir:10 144 EKLTPNTELKIEVIDPRATVVVCDDTVEHDPLFAVFTQEKKDLEGNTNGYSITVYMPQRIVEYRTKTTMEVSANDPIVYD 223 (499) T ss_pred cccccccceEEEEEcccceEEEecCCCCcceEEEEEEEEEeecCCCceEEEEEEEeCCeEEEEEecCCccccCcceeccc Confidence 01111111111111111110 0000000 00001110 0111000000 000011 Q ss_pred EEcccee---eeccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHH Q lcl|Aclame:pro 194 DIHPDRV---FILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDK 270 (449) Q Consensus 194 ~IH~SRl---i~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 270 (449) .-|.--. +.|.+ ..+|.|.++.+-.-+..++.+....+..+-..+...+.+. +. ........... T Consensus 224 ~~~~~g~vPvv~~~n-~~~~~~d~e~v~~liD~~~~~~S~~~~~~~~~~~~~lv~~--------G~---~~~~~~~~~~~ 291 (499) T protein:vir:10 224 GENLFGAVPIIEFRN-NEERQGDFEQLISLIDAYNLLQTDRISDKEAFVDALLVTF--------GF---GLGDDKDDIQR 291 (499) T ss_pred ccCCCCccceEEecC-CCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeee--------cC---ccccccchhhh Confidence 1232221 22222 3457787887766666666665554443322222222111 10 00000101111 Q ss_pred HHHHHHHHhccccceee--cCCCceEEe--ecccCChHHHHHHHHHHHHhhhcCCceeeeccCccccccch-hHHH-HH- Q lcl|Aclame:pro 271 FNEVAGEINRGNDVLMT--TQGATVTPL--VTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKY-FN- 343 (449) Q Consensus 271 ~~~~~~~~~~~~~~~l~--~~~ed~~~~--~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e-D~~n-yy- 343 (449) +..+. ...+ +.+.+++.+ +.+.+++...++.+.+.|...+++|-. -+++- +|+ .++ -++. |. T Consensus 292 -------~~~~~-~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~-~~~~~-~gn-~Sg~Al~~~~~~ 360 (499) T protein:vir:10 292 -------LKRGA-IEAPPREEGADIEWLTKSFDETQVNLLSQSIENDIHKISYVPNM-NDEKF-MGN-VSGEAMKFKLFG 360 (499) T ss_pred -------hhhcc-eeccCCCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCcccC-Cchhh-ccc-chHHHHHHHHHH Confidence 11111 1122 233345554 456679999999999999999999952 12221 233 344 3332 22 Q ss_pred --HHHHHHHHhhhHHHHHHHHHHHHH-hc-CC--CCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHH--HHHcCCcccc- Q lcl|Aclame:pro 344 --ARCQSRRVDLSFEIEDFCDKLIEL-KI-ID--AVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQT--MLGSGDNPAF- 414 (449) Q Consensus 344 --d~I~~~Qe~~~~p~~~~l~~l~~~-~~-~~--~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~--~~~~g~~~~~- 414 (449) ..++.+|..+..-+.+++..++.. +. +. ...++++.|+|-...++.|.|++..+.+..++. +++. .+-+ T Consensus 361 l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl~g~iS~et~~~~--l~~v~ 438 (499) T protein:vir:10 361 LENLLSIKQRYFFDGLRRRLKLIQTIVNIKGANDDASGCKISLVANIPSNLSDVVNNVKNADGIIPRKYTYSW--LPDVD 438 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHh--CCCCC Confidence 233333333333333333333322 11 21 124789999999999999999998876543322 2221 1222 Q ss_pred CH-HHHHH---H---------hcCCCCCC----CCCCCCCcchhhcccc--cCC Q lcl|Aclame:pro 415 SR-EEIRT---A---------AGYDNDDE----EPLGEEDGDEEDKATD--SAA 449 (449) Q Consensus 415 ~~-~e~r~---~---------~~~~~~~~----~~~~~~~~~ee~~~~~--~~a 449 (449) ++ +|+.. + ..+.+.+. ....+++..+.+.... ++. T Consensus 439 d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (499) T protein:vir:10 439 NPQDVIDEMNQQDAETIKKNQEALRGQDPDRLELEDKQDDSSENDKEAGSNHNQ 492 (499) T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccCCCCCCCcccccc Confidence 22 23321 1 00111111 1111111111111111 111 No 192 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=97.92 E-value=1.1e-05 Score=47.75 Aligned_cols=417 Identities=15% Similarity=0.096 Sum_probs=185.7 Q ss_pred CchhhH-HHHHhh---hHHHHHH-HHH-HHHHHHHhhcCcccccchhccC-CcccCCHHHHHHHHHc---CchhHHHHhh Q lcl|Aclame:pro 1 MTDKLT-LAVNHA---LNDARMA-RAR-MGLMVPTMGLDNKRHSAWCEYG-FPELVTYENLYSLYRR---GGIAHGAVEK 70 (449) Q Consensus 1 ~~~~~~-~~v~~~---~~~~~~~-~~~-~~~~~~~~g~~t~r~~~~~~~~-~~~~~~~~~l~~~Y~~---~~l~r~iVd~ 70 (449) |.++|- ...+-+ ..+.+.. .+. ++-.+..+|+..+.. .+ -+...+-.+|-+-||+ ++.+..+|+. T Consensus 1 ~~~~lfg~~i~~~~~~~~~~s~~~~~~~dg~~~~~~~~~~g~~-----~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~e 75 (537) T protein:vir:10 1 MAQQLFGFSLQRAKKVPKGPSFVQKDSLDGSQPIVGGGYFGYS-----VDFDGTIRNDHELITRYREMVLNPECDSAVDD 75 (537) T ss_pred CccccccceeecccccccCCcccCCCcccccceeecccccccc-----cccccccchHHHHHHHHHHHhhccchhhHHHH Confidence 444332 000000 0000000 000 111111111111100 00 1234455788888886 8889999999 Q ss_pred hHHHHhcC-----CcEEe-cCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEecCCCccccccc Q lcl|Aclame:pro 71 LVGKCWQT-----NPEII-EGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPAT 143 (449) Q Consensus 71 pa~d~~r~-----~~~i~-~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~ 143 (449) ++.||+-. .+.|. ...+. .......|-.+.+.+.. .++.++..+..|.--+.|--++-..+ |.+.+ T Consensus 76 IVneaiv~d~~~~pV~i~Ld~~~~-s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fhKii-d~k~p----- 148 (537) T protein:vir:10 76 VVNETICGNFDDVPISIDLHNLKQ-SEKIKKLIRSEFDEILRLLDFDNRAYEIFRRWYVDGRLFFHKVI-DPKKP----- 148 (537) T ss_pred hhcceeEecCCCceEEEEeccccc-chHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEE-eCCCc----- Confidence 99998632 11111 11111 11111222222222221 14455655665543444433333333 33332 Q ss_pred ccCceeeEEEeccccCChhhhh----------ccccccccCC-ceeEEeeeccc-CCCccceEEccceeeeccC------ Q lcl|Aclame:pro 144 KGRGLQKVSVSWAGSLKVAEWD----------TGINSKTYGQ-PKLWKYTERLP-NGSSRRVDIHPDRVFILGD------ 205 (449) Q Consensus 144 ~~~~l~~i~v~~~~~i~~~~~~----------~Dp~s~~yg~-P~~y~i~~~~~-~~~~~~~~IH~SRli~~~~------ 205 (449) .+||..++-+++..+...... .+-...-+.. -++|..++... +++.++++||.+ .|+|.. T Consensus 149 -k~GI~ELr~lDPr~i~~vR~i~~~~~~~~~~~~~~~~v~~~~~eyf~ynp~g~~~~~~~~vkI~~d-AI~y~hSGl~d~ 226 (537) T protein:vir:10 149 -RQGLVELRYVDPRKIRKVTEYEAKRPEALRTQDLNQQLTQQSASYFLYNPKGLKNSTNQGMKIAPD-SIAYCHSGIQDL 226 (537) T ss_pred -cccceeeeeeCCccceeeEeecccCCccceEEecceeeeecccceeeeccccccccCCCceeccHh-heeeecccceeC Confidence 235555555555544322111 1111111111 12333332211 234557778776 344432 Q ss_pred CCCCcchhHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhhccChHHHHHHHHHHHHHHh Q lcl|Aclame:pro 206 YSEDAIGFLEPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLYGVSIDELQDKFNEVAGEIN 279 (449) Q Consensus 206 ~~~~G~s~l~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 279 (449) ...-..|.|.++ +|.|+-++.+ -.+|+- +...++.+ ++-+|+... .++- ++.++..+. T Consensus 227 n~~~i~syLhkAiKp~NQLkm~EDA-----lVIYRi-----tRAPeRRvFYIDVGnLPk~K---AeqY---lr~iM~k~K 290 (537) T protein:vir:10 227 NKNMVLSHLHKAIKAVNQLRMIEDS-----LVIYRL-----SRAPERRIFYIDVGNLPKNK---AEQY---LREVMGRYR 290 (537) T ss_pred CCCeeeeeehhhhHHHHhhHHHHhh-----HHHHhh-----hccccceEEEEecCCCCchh---HHHH---HHHHHHhcc Confidence 223356777664 3344443332 123321 12222222 233333321 1221 222222111 Q ss_pred c------ccc--------c-ee---------ecCCCceEEeec--ccCChHHHHHHHHHHHHhhhcCCceeeeccCcccc Q lcl|Aclame:pro 280 R------GND--------V-LM---------TTQGATVTPLVT--SVADPTATYNVNLQTAAAGVDIPTRILIGNQQAER 333 (449) Q Consensus 280 ~------~~~--------~-~l---------~~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~ 333 (449) + .++ + ++ -+.+.+++++.. +|+-++|+ ..|...+=-|.++|+++|= +..|.+ T Consensus 291 NklVYDa~TGev~ddrk~msMlEDyWLPRReGgrgTEItTLpGgqnlgem~DV-~YF~kKLy~aLnVP~SRl~-~e~~f~ 368 (537) T protein:vir:10 291 NKLVYDANTGEIKDDKKFMSMLEDFWLPRREGGRGTEISTLPGGQNLGELEDV-KYFQKKLYKALNVPSSRLE-TETTFN 368 (537) T ss_pred ceEEEeccCceecccchhhhhhhhhcccccCCCcccceeeccccCCcChHHHH-HHHHHHHHHHhCCCccccC-CCCccc Confidence 0 000 0 00 023446777644 46667665 6888999999999999984 333332 Q ss_pred --ccch---hHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcCCC------CCCceEEeCCCCCCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 334 --SSTE---DQKYFNARCQSRRVDLSFEIEDFCD-KLIELKIIDA------VAKKAVIWDDLNEQTGTEKLTNAKTMGEI 401 (449) Q Consensus 334 --~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~-~l~~~~~~~~------~~~~~~~f~pL~~~sekE~Aei~~~~A~a 401 (449) .|+| |.-.|...|.++|..+..-..+.|. .|++-+...+ ..++.|+|.-=..-+|-..+|+...+..+ T Consensus 369 ~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~ 448 (537) T protein:vir:10 369 IGRAAEITRDEVKFQKFIARLRKRFSELFVDLLKTQLILKGICSIEEWEEMKEHIQFDFIADNYFTELKEIEIRNERMNE 448 (537) T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHH Confidence 2445 8889999999999877666666665 3555555443 24789999999999999999999998888 Q ss_pred HHHHHHcCC-----------ccccCHHHHHHHh----------cCCCCCC-CC-------CCCCCcchhhcccccCC Q lcl|Aclame:pro 402 NQTMLGSGD-----------NPAFSREEIRTAA----------GYDNDDE-EP-------LGEEDGDEEDKATDSAA 449 (449) Q Consensus 402 ~~~~~~~g~-----------~~~~~~~e~r~~~----------~~~~~~~-~~-------~~~~~~~ee~~~~~~~a 449 (449) ++.+-.-.. +--.|.+|+.+.- -+..+.+ +. ....+.+-++.++|.+| T Consensus 449 l~~~dpyvGky~s~dyi~k~ILr~tDeeI~~~~k~I~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (537) T protein:vir:10 449 VAQMDPYVGKYFSANYIRTKVLKQTESEIKEIDKEIKQEIADGVIMDPQAMQAMEMGIGDEEPVPEGGEEPQTDPNS 525 (537) T ss_pred HHHhhhhhhcccchHHHHHHHhccCHHHHHHHHHHHHHHhhCCCCCCcccccccccCCCCcccCCCCCCCcccCCcc Confidence 776531110 0113444443221 1211111 00 00011111222223322 No 193 >protein:vir:106999 Length: 564 # NCBI annotation: portal vertex protein gp20 # Family: family:all:1036 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195138;genbank:gi:58532915;interpro:IPR010823;uniprot:Q5GQN4;genbank:GeneID:3260496 Probab=97.91 E-value=1.2e-05 Score=47.64 Aligned_cols=412 Identities=14% Similarity=0.096 Sum_probs=181.1 Q ss_pred Cc------------hhhHHHHHhhhHHHHHHHHHHHHHHHHhhc--CcccccchhccCCcccCCHHHHHHHHHc---Cch Q lcl|Aclame:pro 1 MT------------DKLTLAVNHALNDARMARARMGLMVPTMGL--DNKRHSAWCEYGFPELVTYENLYSLYRR---GGI 63 (449) Q Consensus 1 ~~------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~--~t~r~~~~~~~~~~~~~~~~~l~~~Y~~---~~l 63 (449) |. .+-.+ +-..++. ++... .+|+ |+-.+ ..|--...+-.+|-..||+ ++. T Consensus 1 m~~lfgf~i~~~~~~~~~S-~vpp~~~-------~~~~~-i~~g~~g~~v~----~~g~~~~~n~~eLI~~YR~ma~~pE 67 (564) T protein:vir:10 1 MSQLFGFLINEKEGQKGQS-PVPPNDE-------ASVST-VAGGYFGTYVD----TSGGQNSRNEYELIRRYRDMSLHPE 67 (564) T ss_pred CcchhcceeeeeccCCCCC-cccCCcC-------CChhh-hhccccceeee----cccccchhhHHHHHHHHHHHhhccc Confidence 22 22111 1111110 11111 1111 11111 1111123455678777876 788 Q ss_pred hHHHHhhhHHHHhcC-----CcEEecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEecCCCc Q lcl|Aclame:pro 64 AHGAVEKLVGKCWQT-----NPEIIEGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIRDEKD 137 (449) Q Consensus 64 ~r~iVd~pa~d~~r~-----~~~i~~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~ 137 (449) +..+|+.++.||+-. .+++.-...+-.......|-.+.+.+.. .++.++..+..|.--+.|--+.-..| |.+. T Consensus 68 Vd~Av~eIVneaIv~d~~~~pV~vdL~~~~~s~siK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fHkii-d~~~ 146 (564) T protein:vir:10 68 VDSAIDEIVNEFVVNDGDDKPVEVDLQNLEIGSGVKKKIRDEFNRILRMMNFNVNAHEIIRNWYVDGRSHYHKVI-DLDN 146 (564) T ss_pred hhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEe-eCCC Confidence 999999999998532 1222111111111111112222222211 13444544554433333332222233 2222 Q ss_pred ccccccccCceeeEEEeccccCChhh-hhccc------------cccccCC-ceeEEeeecccC------------CCcc Q lcl|Aclame:pro 138 WNLPATKGRGLQKVSVSWAGSLKVAE-WDTGI------------NSKTYGQ-PKLWKYTERLPN------------GSSR 191 (449) Q Consensus 138 ~~~Pl~~~~~l~~i~v~~~~~i~~~~-~~~Dp------------~s~~yg~-P~~y~i~~~~~~------------~~~~ 191 (449) + .+||..|+.+++..+..-. ..+++ ..-+|+. |++|.++++... .+++ T Consensus 147 p------k~GI~eLr~lDPr~i~~vr~i~~~~~~~~~~v~k~~~~~~~y~~~~Eyy~Ynp~~~~g~~~~~~~~~~~~~~~ 220 (564) T protein:vir:10 147 P------KKGILELRYIDSLKIRKVRQKLKDVDPNRKEIEKGTALQYDYGDFIEYYIYNPKGFAGNIPMVTGSMDWSNQE 220 (564) T ss_pred h------hhhhhhhhhhcccceeeeeeeccccccccceeeeeeeeeccccccccceeeccccccCccccccccccccccc Confidence 2 2355555544444333221 11211 1123333 566766644221 1234 Q ss_pred ceEEccceeeeccCC-----CCCcchhHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhh Q lcl|Aclame:pro 192 RVDIHPDRVFILGDY-----SEDAIGFLEPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLY 260 (449) Q Consensus 192 ~~~IH~SRli~~~~~-----~~~G~s~l~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~ 260 (449) +++||.+=+..-..+ ..-=.|+|.++ +|.|+-++.+ -.||+ +....++.+ ++-+|+... T Consensus 221 ~ikI~~daI~y~hSGL~d~~~~~i~gyLhkAIKp~NQLkmlEDA-----lVIYR-----itRAPeRRvFYIDVGnLPk~K 290 (564) T protein:vir:10 221 GIKIASDAIAQSTSGLMDLNKKMTLSFLHKAIKSLNQLRMIEDS-----LVIYR-----LSRAPERRIFYIDVGNLPKVK 290 (564) T ss_pred ceeechhhcceecccceeCCCCceeccchhhhHhHHhhHHHHhh-----HHHHh-----hhccccceEEEEecCCCCchh Confidence 677877744322111 11123556553 3344433332 12232 112222221 223333221 Q ss_pred ccChHHHHHHHHHHHHHHhc------ccc--------c-ee---------ecCCCceEEeec--ccCChHHHHHHHHHHH Q lcl|Aclame:pro 261 GVSIDELQDKFNEVAGEINR------GND--------V-LM---------TTQGATVTPLVT--SVADPTATYNVNLQTA 314 (449) Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~------~~~--------~-~l---------~~~~ed~~~~~~--~lsgl~d~~~~~~~~i 314 (449) .++- ++.++..+.+ .++ + ++ -+.+.|++++.. +|+-++|+ ..|...+ T Consensus 291 ---AeqY---lr~iM~k~KNklVYDa~TGevrddrk~msMlEDyWLPRReGgrgTEItTLpGgqnLgem~DV-~YF~kKL 363 (564) T protein:vir:10 291 ---AEQY---LRDVMSRYRNKLVYDGQTGEIRDDKKHMSMLEDFWLPRREGGRGTEITTLPGGQNLGELKDV-EYFKKKL 363 (564) T ss_pred ---HHHH---HHHHHHhcCceEEEeccCceecccchhhhhHhhhcccccCCCcccceeeccccCCcchHHHH-HHHHHHH Confidence 1221 1222221110 000 0 00 023446777643 57777775 5788899 Q ss_pred HhhhcCCceeeeccCcccc--ccch---hHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcCCC------CCCceEEeCC Q lcl|Aclame:pro 315 AAGVDIPTRILIGNQQAER--SSTE---DQKYFNARCQSRRVDLSFEIEDFCD-KLIELKIIDA------VAKKAVIWDD 382 (449) Q Consensus 315 aaas~IP~t~L~Gqs~gg~--~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~-~l~~~~~~~~------~~~~~~~f~p 382 (449) =-|.++|+++|=.+.+|.+ .|+| |.-.|...|.++|..+..-..+.|. .|++-+...+ ..++.|+|.- T Consensus 364 Y~aLnVP~SRl~~e~~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~ 443 (564) T protein:vir:10 364 YNSLNLPPSRLTDDNKAFNLGKSTEILRDELKFTKFIGRLRKRFAQLFHDILKTQLILKGIITPEDWDDMEEHIQYDFLF 443 (564) T ss_pred HHHhCCCcccccCCCceeecccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeee Confidence 9999999999976533332 3455 8889999999999877666666665 3555555443 2478999999 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCC-----------ccccCHHHHHHHh----------cCCCC-CCCCCCCCC--c Q lcl|Aclame:pro 383 LNEQTGTEKLTNAKTMGEINQTMLGSGD-----------NPAFSREEIRTAA----------GYDND-DEEPLGEED--G 438 (449) Q Consensus 383 L~~~sekE~Aei~~~~A~a~~~~~~~g~-----------~~~~~~~e~r~~~----------~~~~~-~~~~~~~~~--~ 438 (449) =..-+|-..+|+...+..+++.+-.-.. +--.|.+|+.+.- -+..+ ..+.+++.+ . T Consensus 444 Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~P~e~~~~~~~~~~~ 523 (564) T protein:vir:10 444 DNHFNELKEQEMQLQRVNLATQMDPFVGKYFSTEYIRRKILMQTENEFKEIDKQMKSDIESGLAIDPIQVNMLDDMEKQN 523 (564) T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCchhhhcCCCccCCC Confidence 8889999999999998888776521110 0113444443221 11111 111110000 0 Q ss_pred ----------------chhhcccccCC Q lcl|Aclame:pro 439 ----------------DEEDKATDSAA 449 (449) Q Consensus 439 ----------------~ee~~~~~~~a 449 (449) +-+..+.++|+ T Consensus 524 ~~~~p~~~~~~~~~~~~~~~~~~~~a~ 550 (564) T protein:vir:10 524 QAFAPELQAAQDDLAAEREIKKLNSAP 550 (564) T ss_pred CcCCcchhhhccccccccChhhhccCC Confidence 00000111111 No 194 >protein:vir:6896 Length: 523 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861872;genbank:gi:32453663;genbank:GeneID:1494298 Probab=97.85 E-value=1.5e-05 Score=47.06 Aligned_cols=418 Identities=14% Similarity=0.093 Sum_probs=179.5 Q ss_pred CchhhHHHHHhhhHHH---------H-HHHH-HHHHHHHHhhcCcc---cccchhc-cCC--cccCCHHHHHHHHHc--- Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDA---------R-MARA-RMGLMVPTMGLDNK---RHSAWCE-YGF--PELVTYENLYSLYRR--- 60 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~---------~-~~~~-~~~~~~~~~g~~t~---r~~~~~~-~~~--~~~~~~~~l~~~Y~~--- 60 (449) |.+=+.-..+.+-... + +... -++....-+++..+ -.-..++ |+. +...+-.+|-..||+ T Consensus 5 ~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~dDGa~~i~~~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR~ma~ 84 (523) T protein:vir:68 5 ILSLFAPWAKMDERDYKDQEKENLESITSPKLDDGAKEYEVSENEAQQTYNAMFQRMFGSQEPGLKSTRELIDTYRNLMT 84 (523) T ss_pred hhhhhhhhhhhhhhhhhhhhhccCCCccccCCCCcceeeeccccccccccchhhhhhhhccccccchHHHHHHHHHHHhh Confidence 1111111111000000 0 0000 00000000000000 0000111 111 234566788888876 Q ss_pred CchhHHHHhhhHHHHhcCC-----cEEecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEecC Q lcl|Aclame:pro 61 GGIAHGAVEKLVGKCWQTN-----PEIIEGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIRD 134 (449) Q Consensus 61 ~~l~r~iVd~pa~d~~r~~-----~~i~~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~d 134 (449) ++.+..+|+.++.||+-.- +.|.-....-.......|-.+.+.+.. .++.++..+..|.--+.|--++-..+ | T Consensus 85 ~pEvd~Av~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKii-d 163 (523) T protein:vir:68 85 NYEVDNAVSEIVSDAIVYEDDTEVVSINLDNTKFSPNIKSMMLDEFNEVLNHLSFQRKGSDHFRRWYVDSRIFFHKII-D 163 (523) T ss_pred ccchhhHHHHhhcceeeecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHHhheeeeEEEEEEEe-e Confidence 8889999999999985321 111111110011111122222222221 14455655665543444433333333 3 Q ss_pred CCcccccccccCceeeEEEeccccCChhhhhcccccc---ccCC-ceeEEeeeccc--------CCCccceEEccceeee Q lcl|Aclame:pro 135 EKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSK---TYGQ-PKLWKYTERLP--------NGSSRRVDIHPDRVFI 202 (449) Q Consensus 135 ~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~---~yg~-P~~y~i~~~~~--------~~~~~~~~IH~SRli~ 202 (449) .+.+ .+||..++-+++..+.......++... -++. -++|..++... ..++++++||.+= |+ T Consensus 164 ~k~p------k~GI~Elr~lDPr~i~~vr~i~~~~~~g~~vi~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~~dA-I~ 236 (523) T protein:vir:68 164 PKRP------KEGIKELRRLDPRQVQYVREVITTTEAGVKIVKGYKEYFIYDTSHESYACDGRIYEAGTKIKIPKAA-IV 236 (523) T ss_pred CCCc------cccceeeeeeCCcceeEEEeecCCCCcchhhhhhhhhheeeccccccccccccccCCCcceecchhh-ee Confidence 3322 236665555555554322111111100 0111 11222221111 1224567777774 33 Q ss_pred ccC-CC-----CCcchhHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhhccChHHHHHH Q lcl|Aclame:pro 203 LGD-YS-----EDAIGFLEPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLYGVSIDELQDK 270 (449) Q Consensus 203 ~~~-~~-----~~G~s~l~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~ 270 (449) |.. +- .-=.|.|.++ +|.|+-++.+ -.+|+- ....++.+ ++-+|+... .++- T Consensus 237 y~hSGL~d~~~~~i~gyLhkAiKp~NQLkmlEDA-----lVIYRi-----tRAPeRRvFYIDvGnlPk~K---AeqY--- 300 (523) T protein:vir:68 237 YAHSGLVDCCGKNIIGYLHRAIKPANQLKLLEDA-----VVIYRI-----TRAPDRRVWYVDTGNMPSRK---AAEH--- 300 (523) T ss_pred eeeccceeCCCCceeccchhhhHHHHhhHHHHhh-----HHHHhh-----hccccceEEEEecCCCCchh---HHHH--- Confidence 421 11 1123566553 3344433332 122321 11122221 223333221 1211 Q ss_pred HHHHHHHHhc------cccc-------e-e----------ecCCCceEEeec--ccCChHHHHHHHHHHHHhhhcCCcee Q lcl|Aclame:pro 271 FNEVAGEINR------GNDV-------L-M----------TTQGATVTPLVT--SVADPTATYNVNLQTAAAGVDIPTRI 324 (449) Q Consensus 271 ~~~~~~~~~~------~~~~-------~-l----------~~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~IP~t~ 324 (449) ++.++..+++ .++- + + -+.+.|++++.. +|+-++|+ ..|...+=-|.++|+++ T Consensus 301 l~~im~k~kNKlvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV-~YF~kkLy~aLnVP~sR 379 (523) T protein:vir:68 301 MQHVMNTMKNRIAYDATTGKIKNQQHIMSMTEDYWLQRRDGKAVTEVDTLPGADNTGNMEDV-RWFRNALYMALRIPITR 379 (523) T ss_pred HHHHHHhhcceeEEeccCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChHHHH-HHHHHHHHHHhCCccee Confidence 1122211110 0000 0 0 023456777744 56667765 68889999999999999 Q ss_pred eeccCcccc--ccch---hHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcCCC------CCCceEEeCCCCCCCHHHHH Q lcl|Aclame:pro 325 LIGNQQAER--SSTE---DQKYFNARCQSRRVDLSFEIEDFCD-KLIELKIIDA------VAKKAVIWDDLNEQTGTEKL 392 (449) Q Consensus 325 L~Gqs~gg~--~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~-~l~~~~~~~~------~~~~~~~f~pL~~~sekE~A 392 (449) |-+++.|.+ .|+| |.-.|...|.++|..+..-..+.|. .|++-+...+ ..++.|+|.-=..-+|-..+ T Consensus 380 l~~~~~~f~~Gr~~EItRDEikF~KFI~rLR~rFs~lf~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~ 459 (523) T protein:vir:68 380 IPSDQGGIQFDAGTSITRDELSFGKFIRELQHKFEEIFLDPLKTNLILKGIITEDEWNDEINNIKIKFHRDSYFSELKDA 459 (523) T ss_pred ecCCCcceecccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHH Confidence 976543222 3455 8889999999999877665666665 3555555543 24789999998999999999 Q ss_pred HHHHHHHHHHHHHHHcCC-----------ccccCHHHHHHHh-cCCCCCCCCCCCCCc-chhhc Q lcl|Aclame:pro 393 TNAKTMGEINQTMLGSGD-----------NPAFSREEIRTAA-GYDNDDEEPLGEEDG-DEEDK 443 (449) Q Consensus 393 ei~~~~A~a~~~~~~~g~-----------~~~~~~~e~r~~~-~~~~~~~~~~~~~~~-~ee~~ 443 (449) |+...+..+++.+-.-.. +--.|.+|+-+.. .++....++.-..++ ++++= T Consensus 460 Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~p~~e~~~f 523 (523) T protein:vir:68 460 EILERRINMLQMAEPFIGKYISHRTAMKDILQMSDEEIEQEAKQIEEESKEARFQDPDQEQEDF 523 (523) T ss_pred HHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCchhhhcC Confidence 999999888776532110 0012444443221 011111111111111 11111 No 195 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=97.81 E-value=1.7e-05 Score=46.68 Aligned_cols=413 Identities=14% Similarity=0.110 Sum_probs=179.2 Q ss_pred CchhhHHHHHhhh---------HHHHHHH-H-HHHHHHHHhhcCcccccc-hhc-cCC-cccCCHHHHHHHHHc---Cch Q lcl|Aclame:pro 1 MTDKLTLAVNHAL---------NDARMAR-A-RMGLMVPTMGLDNKRHSA-WCE-YGF-PELVTYENLYSLYRR---GGI 63 (449) Q Consensus 1 ~~~~~~~~v~~~~---------~~~~~~~-~-~~~~~~~~~g~~t~r~~~-~~~-~~~-~~~~~~~~l~~~Y~~---~~l 63 (449) |.+=+.-..+..- ++.+.+. + .+|.....+++++.-... +++ ++. +...+-.+|-..||+ ++. T Consensus 3 ~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pE 82 (516) T protein:vir:10 3 FLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLINNPE 82 (516) T ss_pred chHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHhhccc Confidence 1111110000000 0000000 0 001111111111111111 111 111 233455788888876 888 Q ss_pred hHHHHhhhHHHHhcC-----CcEEecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEE-ecCCC Q lcl|Aclame:pro 64 AHGAVEKLVGKCWQT-----NPEIIEGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLH-IRDEK 136 (449) Q Consensus 64 ~r~iVd~pa~d~~r~-----~~~i~~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~-i~d~~ 136 (449) +..+|+.++.||+-. .+++.-...+-.......|-.+.+.+.. .++.++..+..|.--+.| -+++. |-| T Consensus 83 vd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDg--Ri~fhKiid-- 158 (516) T protein:vir:10 83 VERAVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKLDTLFRRWYVDS--RIFFHKIMP-- 158 (516) T ss_pred hhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcc--eEEEEEEec-- Confidence 999999999998632 1112110000001111122222222211 134555555554333334 33332 322 Q ss_pred cccccccccCceeeEEEeccccCChhhhh--cccccc---------ccCCc--eeEEeeecccCCCccceEEccceeeec Q lcl|Aclame:pro 137 DWNLPATKGRGLQKVSVSWAGSLKVAEWD--TGINSK---------TYGQP--KLWKYTERLPNGSSRRVDIHPDRVFIL 203 (449) Q Consensus 137 ~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~--~Dp~s~---------~yg~P--~~y~i~~~~~~~~~~~~~IH~SRli~~ 203 (449) ++.+||..++-+++..+...... .|..+. .++.| ..|.++.... +++++++||.+= |+| T Consensus 159 ------~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~-~~~~~ikI~~dA-I~y 230 (516) T protein:vir:10 159 ------NPKKGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIF-EPNTRIKIPRSA-VVY 230 (516) T ss_pred ------CccccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCcccccccccee-CCCcceeechhh-eee Confidence 22346666555555544332211 111110 00111 1222222111 234467777764 333 Q ss_pred cC------CCCCcchhHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhhccChHHHHHHH Q lcl|Aclame:pro 204 GD------YSEDAIGFLEPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLYGVSIDELQDKF 271 (449) Q Consensus 204 ~~------~~~~G~s~l~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~~ 271 (449) .. ....=.|.|+++ +|.|+-++.++ .+|+- ....++.+ ++-+|+... .++- + T Consensus 231 ~hSGL~d~~~~~i~syLhkAiKp~NQLkm~EDAl-----VIYRi-----tRAPeRRvFYIDvGnlPk~K---AeqY---l 294 (516) T protein:vir:10 231 ASSGLMDCSDRGIIGYLHNAVKPANQLKLLEDAM-----VIYRI-----TRAPERRVFYIDVGNMNNRK---ATEY---V 294 (516) T ss_pred ecccceeCCCCceeeeehhhhHhHHhhHHHHhhH-----HHHhh-----hccccceEEEEecCCCCchh---HHHH---H Confidence 21 112225666654 34444443321 22321 12222221 233333221 1221 1 Q ss_pred HHHHHHHhc------cccc-------e-e----------ecCCCceEEeec--ccCChHHHHHHHHHHHHhhhcCCceee Q lcl|Aclame:pro 272 NEVAGEINR------GNDV-------L-M----------TTQGATVTPLVT--SVADPTATYNVNLQTAAAGVDIPTRIL 325 (449) Q Consensus 272 ~~~~~~~~~------~~~~-------~-l----------~~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~IP~t~L 325 (449) +.++..+.+ .++- + + -+.+.|++++.. +|+-++|+ ..|...+=-|.++|+++| T Consensus 295 ~~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV-~YF~kkLy~aLnVP~sRl 373 (516) T protein:vir:10 295 NGIMQSLKNRVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVTEVSSLPGAQTMGDMDDV-RWFNKKLYEALRIPLSRI 373 (516) T ss_pred HHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHHHH-HHHHHHHHHHhCCCcccc Confidence 112111110 0000 0 0 023456777644 46667665 688899999999999999 Q ss_pred eccCcccc---ccch---hHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcCCC------CCCceEEeCCCCCCCHHHHH Q lcl|Aclame:pro 326 IGNQQAER---SSTE---DQKYFNARCQSRRVDLSFEIEDFCD-KLIELKIIDA------VAKKAVIWDDLNEQTGTEKL 392 (449) Q Consensus 326 ~Gqs~gg~---~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~-~l~~~~~~~~------~~~~~~~f~pL~~~sekE~A 392 (449) =..+++.+ .++| |.-.|...|.++|..+..-..+.|. .|++-+...+ ..++.|+|.-=..-+|-..+ T Consensus 374 ~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~ 453 (516) T protein:vir:10 374 PRDDGGMVIGGQDTAITRDELDFRKFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDI 453 (516) T ss_pred cCCCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHH Confidence 87665432 3455 8889999999999877665666665 3555555443 24789999999999999999 Q ss_pred HHHHHHHHHHHHHHHcCCccccCHHHHHHHh-------------cCCCCCCCCCCCCCcchhhccc Q lcl|Aclame:pro 393 TNAKTMGEINQTMLGSGDNPAFSREEIRTAA-------------GYDNDDEEPLGEEDGDEEDKAT 445 (449) Q Consensus 393 ei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~-------------~~~~~~~~~~~~~~~~ee~~~~ 445 (449) |+...+..+++.+-.-+ .--++.+=+|... .++....++.-..++++ .+. T Consensus 454 Eil~~R~~~l~~~dpyv-Gky~s~~yi~k~ILr~tDeei~~e~k~I~~E~~~~~~~~p~~~--~~f 516 (516) T protein:vir:10 454 ETLRLRVDALSQIEPYV-GKYVSHDYVMKNILQMTEEQIAQEEKQIEQEAGIKRFQNPENE--DDF 516 (516) T ss_pred HHHHHHHHHHHHhhhhh-ccccchHHHHHHHhcCCHhhHHHHHHHHHHhhhCCCCCCCCcc--ccC Confidence 99999988887654211 0122333332211 01111111111111111 111 No 196 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=97.81 E-value=1.7e-05 Score=46.68 Aligned_cols=413 Identities=14% Similarity=0.110 Sum_probs=179.2 Q ss_pred CchhhHHHHHhhh---------HHHHHHH-H-HHHHHHHHhhcCcccccc-hhc-cCC-cccCCHHHHHHHHHc---Cch Q lcl|Aclame:pro 1 MTDKLTLAVNHAL---------NDARMAR-A-RMGLMVPTMGLDNKRHSA-WCE-YGF-PELVTYENLYSLYRR---GGI 63 (449) Q Consensus 1 ~~~~~~~~v~~~~---------~~~~~~~-~-~~~~~~~~~g~~t~r~~~-~~~-~~~-~~~~~~~~l~~~Y~~---~~l 63 (449) |.+=+.-..+..- ++.+.+. + .+|.....+++++.-... +++ ++. +...+-.+|-..||+ ++. T Consensus 3 ~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pE 82 (516) T protein:vir:10 3 FLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLINNPE 82 (516) T ss_pred chHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHhhccc Confidence 1111110000000 0000000 0 001111111111111111 111 111 233455788888876 888 Q ss_pred hHHHHhhhHHHHhcC-----CcEEecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEE-ecCCC Q lcl|Aclame:pro 64 AHGAVEKLVGKCWQT-----NPEIIEGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLH-IRDEK 136 (449) Q Consensus 64 ~r~iVd~pa~d~~r~-----~~~i~~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~-i~d~~ 136 (449) +..+|+.++.||+-. .+++.-...+-.......|-.+.+.+.. .++.++..+..|.--+.| -+++. |-| T Consensus 83 vd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDg--Ri~fhKiid-- 158 (516) T protein:vir:10 83 VERAVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKLDTLFRRWYVDS--RIFFHKIMP-- 158 (516) T ss_pred hhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcc--eEEEEEEec-- Confidence 999999999998632 1112110000001111122222222211 134555555554333334 33332 322 Q ss_pred cccccccccCceeeEEEeccccCChhhhh--cccccc---------ccCCc--eeEEeeecccCCCccceEEccceeeec Q lcl|Aclame:pro 137 DWNLPATKGRGLQKVSVSWAGSLKVAEWD--TGINSK---------TYGQP--KLWKYTERLPNGSSRRVDIHPDRVFIL 203 (449) Q Consensus 137 ~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~--~Dp~s~---------~yg~P--~~y~i~~~~~~~~~~~~~IH~SRli~~ 203 (449) ++.+||..++-+++..+...... .|..+. .++.| ..|.++.... +++++++||.+= |+| T Consensus 159 ------~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~-~~~~~ikI~~dA-I~y 230 (516) T protein:vir:10 159 ------NPKKGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIF-EPNTRIKIPRSA-VVY 230 (516) T ss_pred ------CccccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCcccccccccee-CCCcceeechhh-eee Confidence 22346666555555544332211 111110 00111 1222222111 234467777764 333 Q ss_pred cC------CCCCcchhHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhhccChHHHHHHH Q lcl|Aclame:pro 204 GD------YSEDAIGFLEPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLYGVSIDELQDKF 271 (449) Q Consensus 204 ~~------~~~~G~s~l~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~~ 271 (449) .. ....=.|.|+++ +|.|+-++.++ .+|+- ....++.+ ++-+|+... .++- + T Consensus 231 ~hSGL~d~~~~~i~syLhkAiKp~NQLkm~EDAl-----VIYRi-----tRAPeRRvFYIDvGnlPk~K---AeqY---l 294 (516) T protein:vir:10 231 ASSGLMDCSDRGIIGYLHNAVKPANQLKLLEDAM-----VIYRI-----TRAPERRVFYIDVGNMNNRK---ATEY---V 294 (516) T ss_pred ecccceeCCCCceeeeehhhhHhHHhhHHHHhhH-----HHHhh-----hccccceEEEEecCCCCchh---HHHH---H Confidence 21 112225666654 34444443321 22321 12222221 233333221 1221 1 Q ss_pred HHHHHHHhc------cccc-------e-e----------ecCCCceEEeec--ccCChHHHHHHHHHHHHhhhcCCceee Q lcl|Aclame:pro 272 NEVAGEINR------GNDV-------L-M----------TTQGATVTPLVT--SVADPTATYNVNLQTAAAGVDIPTRIL 325 (449) Q Consensus 272 ~~~~~~~~~------~~~~-------~-l----------~~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~IP~t~L 325 (449) +.++..+.+ .++- + + -+.+.|++++.. +|+-++|+ ..|...+=-|.++|+++| T Consensus 295 ~~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV-~YF~kkLy~aLnVP~sRl 373 (516) T protein:vir:10 295 NGIMQSLKNRVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVTEVSSLPGAQTMGDMDDV-RWFNKKLYEALRIPLSRI 373 (516) T ss_pred HHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHHHH-HHHHHHHHHHhCCCcccc Confidence 112111110 0000 0 0 023456777644 46667665 688899999999999999 Q ss_pred eccCcccc---ccch---hHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcCCC------CCCceEEeCCCCCCCHHHHH Q lcl|Aclame:pro 326 IGNQQAER---SSTE---DQKYFNARCQSRRVDLSFEIEDFCD-KLIELKIIDA------VAKKAVIWDDLNEQTGTEKL 392 (449) Q Consensus 326 ~Gqs~gg~---~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~-~l~~~~~~~~------~~~~~~~f~pL~~~sekE~A 392 (449) =..+++.+ .++| |.-.|...|.++|..+..-..+.|. .|++-+...+ ..++.|+|.-=..-+|-..+ T Consensus 374 ~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~ 453 (516) T protein:vir:10 374 PRDDGGMVIGGQDTAITRDELDFRKFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDI 453 (516) T ss_pred cCCCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHH Confidence 87665432 3455 8889999999999877665666665 3555555443 24789999999999999999 Q ss_pred HHHHHHHHHHHHHHHcCCccccCHHHHHHHh-------------cCCCCCCCCCCCCCcchhhccc Q lcl|Aclame:pro 393 TNAKTMGEINQTMLGSGDNPAFSREEIRTAA-------------GYDNDDEEPLGEEDGDEEDKAT 445 (449) Q Consensus 393 ei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~-------------~~~~~~~~~~~~~~~~ee~~~~ 445 (449) |+...+..+++.+-.-+ .--++.+=+|... .++....++.-..++++ .+. T Consensus 454 Eil~~R~~~l~~~dpyv-Gky~s~~yi~k~ILr~tDeei~~e~k~I~~E~~~~~~~~p~~~--~~f 516 (516) T protein:vir:10 454 ETLRLRVDALSQIEPYV-GKYVSHDYVMKNILQMTEEQIAQEEKQIEQEAGIKRFQNPENE--DDF 516 (516) T ss_pred HHHHHHHHHHHHhhhhh-ccccchHHHHHHHhcCCHhhHHHHHHHHHHhhhCCCCCCCCcc--ccC Confidence 99999988887654211 0122333332211 01111111111111111 111 No 197 >protein:vir:106282 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944108;genbank:gi:38640152;genbank:GeneID:2658030 Probab=97.78 E-value=2e-05 Score=46.36 Aligned_cols=415 Identities=13% Similarity=0.140 Sum_probs=180.1 Q ss_pred CchhhHHHHHhhh--HHHHHHHHHHHHHHHHhhcCcc-------cccchh----c-cCC-cccCCHHHHHHHHHc---Cc Q lcl|Aclame:pro 1 MTDKLTLAVNHAL--NDARMARARMGLMVPTMGLDNK-------RHSAWC----E-YGF-PELVTYENLYSLYRR---GG 62 (449) Q Consensus 1 ~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~g~~t~-------r~~~~~----~-~~~-~~~~~~~~l~~~Y~~---~~ 62 (449) |.+=+.-..+..- ..........+++.+...-|+. ...+++ + ++. +...+-.+|-..||+ ++ T Consensus 5 ~l~lf~f~~k~~e~~~~~~~~~~~~s~~~p~~~dGa~~I~~~~~~~~~~~~~~~~~~~~~~~~~n~~eLI~~YR~ma~~p 84 (521) T protein:vir:10 5 FLKLLQPWMKDDEKRVQSDLSDRIDSFAVPDTADGAIEVDKQIDTTAPKTAIVQSVLGYAPKIQNTKDLINQYRSLSKYH 84 (521) T ss_pred hhHHhhhhhhhhhhHHhhhhccCccccccccCCCCceeeccCCCccccccchhhhhhccccccchHHHHHHHHHHHhhcc Confidence 2111111100000 0000000000111111111110 000110 1 111 122356778888876 78 Q ss_pred hhHHHHhhhHHHHhcCC-----cEEe-cCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEe-cC Q lcl|Aclame:pro 63 IAHGAVEKLVGKCWQTN-----PEII-EGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHI-RD 134 (449) Q Consensus 63 l~r~iVd~pa~d~~r~~-----~~i~-~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i-~d 134 (449) .+..+|+.++.||+-.- +.+. ...+..+ .....|-.+.+.+.. .++.++..+..|. -|=.|-++... -| T Consensus 85 Evd~Av~eIvneaiv~d~~~~pV~i~Ld~~~~s~-~iK~kI~eeF~~Il~ll~F~~~~~~~fR~--WYVDgRi~fHkiid 161 (521) T protein:vir:10 85 EVDNAIDEIINDAIVQEDNRDTVYLDLDKTDWNE-SVKEMVREEFRTILKLLKFEREGKRHFRR--WYVDSRIYFHKMID 161 (521) T ss_pred chhhHHHhhhcceEEecCCCceEEEEecCcccch-HHHHHHHHHHHHHHHHhccchhhhHHHhh--heeeeeEEEEEEee Confidence 89999999999985321 1121 1111111 111122222222211 1445555555543 34333444432 12 Q ss_pred CCcccccccccCceeeEEEeccccCChhh-hhc--cccccccCC-ceeEEeeec------ccCCCccceEEccceeeecc Q lcl|Aclame:pro 135 EKDWNLPATKGRGLQKVSVSWAGSLKVAE-WDT--GINSKTYGQ-PKLWKYTER------LPNGSSRRVDIHPDRVFILG 204 (449) Q Consensus 135 ~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~-~~~--Dp~s~~yg~-P~~y~i~~~------~~~~~~~~~~IH~SRli~~~ 204 (449) .+. +.+||..++-+++..+.... ..+ +..-..+.. -++|..++. ..+.++.+++||.+ .|+|. T Consensus 162 ~~~------pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~~g~~~~~vkI~~d-aI~y~ 234 (521) T protein:vir:10 162 PAR------PKDGIKELRLLDPRNVEYYRVNLKSNENGNDVYKGVKEFFTYGATEDNRYNISGNSNNLVQIPID-AIVYS 234 (521) T ss_pred CCC------ccccceeeeeeCCcceeeeeeecCCCCCcchhhccceeeeeeccCCCceecCCCCCCcceeechh-heeee Confidence 222 22355555555544442211 111 000011111 122222211 11334556788886 34443 Q ss_pred C------CCCCcchhHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhhccChHHHHHHHH Q lcl|Aclame:pro 205 D------YSEDAIGFLEPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLYGVSIDELQDKFN 272 (449) Q Consensus 205 ~------~~~~G~s~l~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~ 272 (449) . ...-..|.|+++ +|.|+-++.+ -.+|+- ....++.+ ++-+|+... .++- ++ T Consensus 235 hSGL~d~~~~~i~syLhkAiKp~NQLkm~EDA-----lVIYRi-----tRAPeRRvFYIDvGnlpk~K---AeqY---l~ 298 (521) T protein:vir:10 235 HSGKVDIDGKTIVGYLHNVIKPANQLKMLEDA-----MVIYRI-----TRAPERRVFYIDVGTMPNKK---ATQH---LN 298 (521) T ss_pred cccceeCCCCceeccchhhhHhHHhhHHHHhh-----HHHHhh-----hccccceEEEEecCCCCchh---HHHH---HH Confidence 2 234456777664 3444444332 123321 12222221 223333221 1221 11 Q ss_pred HHHHHHhc------cccc-------e-e----------ecCCCceEEeec--ccCChHHHHHHHHHHHHhhhcCCceeee Q lcl|Aclame:pro 273 EVAGEINR------GNDV-------L-M----------TTQGATVTPLVT--SVADPTATYNVNLQTAAAGVDIPTRILI 326 (449) Q Consensus 273 ~~~~~~~~------~~~~-------~-l----------~~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~IP~t~L~ 326 (449) .++....+ .++- + + -+.+.+++++.. +|+-++|+ ..|...+=-|.++|+++|= T Consensus 299 ~iM~k~kNklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEI~TLpggqnlgem~DV-~YF~kkLy~aLnVP~sRl~ 377 (521) T protein:vir:10 299 NVMQGLKNRVVYDSSTGKVKNSSNNLAMTEDYWLMRRDGKATTEVSTLPGAQSMGEMDDV-RWFNRKLYESMKIPLSRLP 377 (521) T ss_pred HHHHhcCceEEEeccCceeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHHHH-HHHHHHHHHHhCCCccccC Confidence 11111110 0000 0 0 023456777644 46666665 6888999999999999985 Q ss_pred ccCcccc--ccch---hHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcCCC------CCCceEEeCCCCCCCHHHHHHH Q lcl|Aclame:pro 327 GNQQAER--SSTE---DQKYFNARCQSRRVDLSFEIEDFCD-KLIELKIIDA------VAKKAVIWDDLNEQTGTEKLTN 394 (449) Q Consensus 327 Gqs~gg~--~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~-~l~~~~~~~~------~~~~~~~f~pL~~~sekE~Aei 394 (449) .+.+|.+ .|+| |.-.|...|.++|..+..-..+.|. .|++-+...+ ..++.|+|.-=..-+|-..+|+ T Consensus 378 ~e~~~f~~Gr~~EItRDEikF~KFI~rLR~rFs~~f~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~ei 457 (521) T protein:vir:10 378 QEGAGVTFGAGNDITRDELQFTKYIRGLQQQFEPIFLNPLRTNLMLKGKMSVSEWEEQAENIKVVFSKDSYYEEIKDVEI 457 (521) T ss_pred CCCCceecccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHH Confidence 5533332 2344 8888999999999877665666665 3555555443 2478999999999999999999 Q ss_pred HHHHHHHHHHHHH--cCCcccc------------CHHHHHHHh-cCCCCCCCC-CCCCCcchhhc Q lcl|Aclame:pro 395 AKTMGEINQTMLG--SGDNPAF------------SREEIRTAA-GYDNDDEEP-LGEEDGDEEDK 443 (449) Q Consensus 395 ~~~~A~a~~~~~~--~g~~~~~------------~~~e~r~~~-~~~~~~~~~-~~~~~~~ee~~ 443 (449) ...+..+++.+-- -+. --+ |.+|+.++. .++....++ ..+.++++++= T Consensus 458 l~~R~~~l~~~dp~~yvG-ky~s~dyi~k~ILr~tDeeik~~~k~I~~E~~~~~~~~p~~e~~df 521 (521) T protein:vir:10 458 LERRVNLVQTLASAEVTG-KYLSHEYVMKNILRMSDEDIKTEREKIDGELKDSVYKNPEDPMEEF 521 (521) T ss_pred HHHHHHHHHhhcCccccc-cccchHHHHHHHhcCCHhHHHHHHHHHHHhhhCCCCCCCcchhhcC Confidence 9999888876632 110 122 333332211 011111111 11111111111 No 198 >protein:vir:108049 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595296;genbank:gi:161622602;genbank:GeneID:5783768 Probab=97.75 E-value=2.2e-05 Score=46.08 Aligned_cols=417 Identities=15% Similarity=0.118 Sum_probs=179.3 Q ss_pred CchhhHHHHHhhhHHH-HHHH-HHHHHHHHHhhcCc-----ccccch-----hccC---CcccCCHHHHHHHHHc---Cc Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDA-RMAR-ARMGLMVPTMGLDN-----KRHSAW-----CEYG---FPELVTYENLYSLYRR---GG 62 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~-~~~~-~~~~~~~~~~g~~t-----~r~~~~-----~~~~---~~~~~~~~~l~~~Y~~---~~ 62 (449) |.+=+.-..+.+-... +..- ....++.+...-|+ .-+... ++++ -+...+-.+|-..||+ ++ T Consensus 7 ~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~~dGa~~I~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR~ma~~p 86 (524) T protein:vir:10 7 ILSFLKPWANEDEKEYKQQINNNLESVTAPKLDDGAREIETQEQNIPYNALMQQMFGSNEPEVKNTRELIDTYRNLMNNY 86 (524) T ss_pred HHHHhhhhhcchhhhhhhhhccCCCccccCCCCCCceeeccCcccccchhhhhhhhhcccchhhhHHHHHHHHHHHhhcc Confidence 1111110000000000 0000 00001111101010 000000 0111 1233455678888876 88 Q ss_pred hhHHHHhhhHHHHhcC-----CcEEe-cCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEe-cC Q lcl|Aclame:pro 63 IAHGAVEKLVGKCWQT-----NPEII-EGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHI-RD 134 (449) Q Consensus 63 l~r~iVd~pa~d~~r~-----~~~i~-~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i-~d 134 (449) .+..+|+.++.||+-. .+++. ...+-. ......|-.+.+.+.. .++.++..+..|.--+.| -++... -| T Consensus 87 Evd~Av~eIVneaiv~d~~~~pV~l~Ld~~~~s-~siK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDg--Ri~fHkiid 163 (524) T protein:vir:10 87 EVDNAVQEIVSDAIVYEDDKEVVALNLDGTDFS-QSIKDKILAEFSEVLNLLNFQRKGTDHFQRWYVDS--RIFFHKIIN 163 (524) T ss_pred chhhHHHHhhcceeEecCCCceEEEEecccCcc-hHHHHHHHHHHHHHHHHhccchhhhHHHhhheeec--eEEEEEEee Confidence 8999999999998632 11221 111100 1111122222222211 134555555554333334 344432 12 Q ss_pred CCcccccccccCceeeEEEeccccCChh-hhhccccc--cccCCc-eeEEeeeccc--------CCCccceEEccceeee Q lcl|Aclame:pro 135 EKDWNLPATKGRGLQKVSVSWAGSLKVA-EWDTGINS--KTYGQP-KLWKYTERLP--------NGSSRRVDIHPDRVFI 202 (449) Q Consensus 135 ~~~~~~Pl~~~~~l~~i~v~~~~~i~~~-~~~~Dp~s--~~yg~P-~~y~i~~~~~--------~~~~~~~~IH~SRli~ 202 (449) .+. +.+||..++-+++..+... ...+++.. ..+..- ++|..++... -+++++++||.+=++. T Consensus 164 ~~~------pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~~~~~~~~~~~~~~ikI~~dAIvy 237 (524) T protein:vir:10 164 PKK------MKDGVQELRRLDPRQVQYIREIVTRMEDGVKIVDGYREFFVYDTGHESYCADGRIYSAGTKVKIPRAAVVY 237 (524) T ss_pred CCC------ccccceeeeeeCCccceeeeeecccCcccchhhcchhhheeecCCCcccccCcceecCCcceecchhheee Confidence 222 2235555555555444321 11111111 111111 1222221110 1234567888886554 Q ss_pred ccCCCC-----CcchhHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhhccChHHHHHHH Q lcl|Aclame:pro 203 LGDYSE-----DAIGFLEPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLYGVSIDELQDKF 271 (449) Q Consensus 203 ~~~~~~-----~G~s~l~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~~ 271 (449) -..+-. -=.|.|.++ +|.|+-++.+ -.||+- ....++.+ ++-+|+... .++- + T Consensus 238 ~~SGL~d~~~~~i~syLhkAiKp~NQLkm~EDA-----lVIYRi-----tRAPeRRvFYIDVGnlPk~K---AeqY---l 301 (524) T protein:vir:10 238 AHSGLLDCCGKNIIGYLQRAIKPANQLKLMEDA-----MVIYRI-----TRAPDRRVFYIDTGNMPSRK---AAAQ---M 301 (524) T ss_pred eccCcccCCCCceeccchHhhHHHHhhHHHHhh-----HHHHhh-----hccccceEEEEecCCCCchh---HHHH---H Confidence 332211 123566553 3344443332 122321 11222221 223333221 1211 1 Q ss_pred HHHHHHHhc------ccc--------cee----------ecCCCceEEeec--ccCChHHHHHHHHHHHHhhhcCCceee Q lcl|Aclame:pro 272 NEVAGEINR------GND--------VLM----------TTQGATVTPLVT--SVADPTATYNVNLQTAAAGVDIPTRIL 325 (449) Q Consensus 272 ~~~~~~~~~------~~~--------~~l----------~~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~IP~t~L 325 (449) +.++..+++ .++ +.+ -+.+.|++++.. +|+-++|+ ..|...+=-|.++|+++| T Consensus 302 ~~im~k~kNKlvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV-~YF~kkLy~aLnVP~sRl 380 (524) T protein:vir:10 302 QHIMNTMKNRVVYDASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTMPGATGMSDMDDV-LYFRTALYRALRIPESRI 380 (524) T ss_pred HHHHHhcCceeEEeccCCeeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHHHH-HHHHHHHHHHhCCCchhc Confidence 222211110 000 000 023456777744 46667665 688899999999999999 Q ss_pred eccCcccc---ccch---hHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcCCC------CCCceEEeCCCCCCCHHHHH Q lcl|Aclame:pro 326 IGNQQAER---SSTE---DQKYFNARCQSRRVDLSFEIEDFCD-KLIELKIIDA------VAKKAVIWDDLNEQTGTEKL 392 (449) Q Consensus 326 ~Gqs~gg~---~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~-~l~~~~~~~~------~~~~~~~f~pL~~~sekE~A 392 (449) =.++++++ .++| |.-.|...|.++|..+..-..+.|. .|++-+...+ ..++.|+|.-=..-+|-..+ T Consensus 381 ~~e~~~~f~~gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~ 460 (524) T protein:vir:10 381 PSESNSGVMFDAGTAITRDELKFAKWIRQLQNKFEEIFLDPLKTNLILKKIITEDEWEREINNIKVTFNRDSYFSEMKDA 460 (524) T ss_pred cCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHH Confidence 65544333 3455 8889999999999877666666665 3555555543 24789999999999999999 Q ss_pred HHHHHHHHHHHHHHHcCC-----------ccccCHHHHHHHh-cCCCCCCCCC-CCCCcchhhc Q lcl|Aclame:pro 393 TNAKTMGEINQTMLGSGD-----------NPAFSREEIRTAA-GYDNDDEEPL-GEEDGDEEDK 443 (449) Q Consensus 393 ei~~~~A~a~~~~~~~g~-----------~~~~~~~e~r~~~-~~~~~~~~~~-~~~~~~ee~~ 443 (449) |+...+..+++.+-.-.. +--.|.+|+.++- .++....++. .+.++++++= T Consensus 461 Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~~~~~~~~f 524 (524) T protein:vir:10 461 EIMERRINMLTMAEPFIGKYISHQTAMKDFLQMTDEEINQEAKQIEEESKEARFQNPDEEEEDF 524 (524) T ss_pred HHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCChhhhcC Confidence 999999888776532110 0012444433221 0111111111 1111111111 No 199 >protein:vir:81017 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469501;genbank:gi:157311458;genbank:GeneID:5602316 Probab=97.74 E-value=2.3e-05 Score=45.98 Aligned_cols=415 Identities=16% Similarity=0.140 Sum_probs=189.4 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHH-------HHHhhcCc-------ccccc-h---hccCC---cccCCHHHHHHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLM-------VPTMGLDN-------KRHSA-W---CEYGF---PELVTYENLYSLYR 59 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~g~~t-------~r~~~-~---~~~~~---~~~~~~~~l~~~Y~ 59 (449) |+..|++=..-..-... .....+. .+..--|+ .-+.+ + .++.+ +...+-.+|-..|| T Consensus 1 ~~~~l~~~~~~~~~~~~--~~~~~~~~~~~s~~~P~~~dGa~~i~~~~~~~~~~~gg~~~~~~~~e~~~~~~~eLI~~YR 78 (521) T protein:vir:81 1 MFSRLKMLARWADFDND--KYEEQIKDKAESIAAPKNNDGATEVEINDNLPASAWNSLTQQFYSTDQKISTTKQLVNTYR 78 (521) T ss_pred CcchhhhhHhhcCchhh--hHHhhhccCccccccCCCCCCceEecccCCCcceeecceeeeecccccchhhHHHHHHHHH Confidence 88888754432221111 1111111 11100011 00111 1 11111 12335567888887 Q ss_pred c---CchhHHHHhhhHHHHhcC-----CcEEecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEE Q lcl|Aclame:pro 60 R---GGIAHGAVEKLVGKCWQT-----NPEIIEGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILL 130 (449) Q Consensus 60 ~---~~l~r~iVd~pa~d~~r~-----~~~i~~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i 130 (449) + ++.+..+|+.++.||+-. .+++.-...+-.......|-.+.+.+.. .++.++..+..|.--+.|--++-. T Consensus 79 ~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhk 158 (521) T protein:vir:81 79 GLMNNHEVENAVQNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLNTIQFDRRGQDMFRRWYVDSRIFFHK 158 (521) T ss_pred HHhhccchhhHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEE Confidence 6 788999999999998632 1112110000011111122222222211 144555556555444445444444 Q ss_pred EecCCCcccccccccCceeeEEEeccccCChhhhh---ccccccccCCce-eEEeeeccc-----C---CCccceEEccc Q lcl|Aclame:pro 131 HIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWD---TGINSKTYGQPK-LWKYTERLP-----N---GSSRRVDIHPD 198 (449) Q Consensus 131 ~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~---~Dp~s~~yg~P~-~y~i~~~~~-----~---~~~~~~~IH~S 198 (449) .++ ++ +.+||..++-+++..+.....+ ..+.-..++.-+ +|..++... | +++.+++||.+ T Consensus 159 iid--~~------pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~vkI~~d 230 (521) T protein:vir:81 159 IIG--KN------PKDGIVELRQLDPRNLEYVREIITEDTPEGKIYKATKEYFIYTVGNSSYCAGGQVFSPNSRVKIPRS 230 (521) T ss_pred EEc--CC------ccccceeeeeeCCcceeeeeeecccccCccceecceeeeeeeecCCccccccceeecCCcceeechh Confidence 442 22 2346666666665555432211 011111122222 222222110 0 23456677766 Q ss_pred eeeeccC------CCCCcchhHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhhccChHH Q lcl|Aclame:pro 199 RVFILGD------YSEDAIGFLEPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLYGVSIDE 266 (449) Q Consensus 199 Rli~~~~------~~~~G~s~l~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~ 266 (449) = |+|.. ...-=.|.|+++ +|.|+-++.+ -.+|+ +....++.+ ++-+|+... .++ T Consensus 231 A-I~y~hSGl~d~~~~~i~syLhkAiKp~NQLkm~EDA-----lVIYR-----itRAPeRRvFYIDvGnlpk~K---Aeq 296 (521) T protein:vir:81 231 A-ITYAHSGLMDCDDKYIIGYLHRAVKPANQLKLLEDA-----MVVYR-----ITRAPERRVFFIDTGNMNNRK---AAQ 296 (521) T ss_pred h-eeeeeccceeCCCCeeeecchhhhHhHHhhHHHHhh-----HHHHh-----hhccccceEEEEecCCCCchh---HHH Confidence 3 33321 111123566553 3444443332 12232 112222222 233333321 122 Q ss_pred HHHHHHHHHHHHhc--------cc------cceee----------cCCCceEEeec--ccCChHHHHHHHHHHHHhhhcC Q lcl|Aclame:pro 267 LQDKFNEVAGEINR--------GN------DVLMT----------TQGATVTPLVT--SVADPTATYNVNLQTAAAGVDI 320 (449) Q Consensus 267 ~~~~~~~~~~~~~~--------~~------~~~l~----------~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~I 320 (449) - ++.++..+.+ |. .+.++ +.+.|++++.. +|+-++|+ ..|...+=-|.++ T Consensus 297 Y---l~~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV-~YF~kkLy~aLnV 372 (521) T protein:vir:81 297 H---MNSVAQSFKNRVVYDASTGKLKNQQANLSMTEDYWLQRRDGKAITDVTTLPGASGMSDIDDI-RYFNRKLYEALRV 372 (521) T ss_pred H---HHHHHHhcCceeEeecccccccccccccchhhhhcccccCCCcccceeecccCCCCChHHHH-HHHHHHHHHHhCC Confidence 1 2222222211 00 00000 23457777754 56667775 6888999999999 Q ss_pred CceeeeccCcccc---ccch---hHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcCCCC------CCceEEeCCCCCCC Q lcl|Aclame:pro 321 PTRILIGNQQAER---SSTE---DQKYFNARCQSRRVDLSFEIEDFCD-KLIELKIIDAV------AKKAVIWDDLNEQT 387 (449) Q Consensus 321 P~t~L~Gqs~gg~---~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~-~l~~~~~~~~~------~~~~~~f~pL~~~s 387 (449) |+++|-.++.+++ .++| |.-.|...|.++|..+..-..+.|. .|++-++..+. ..+.|+|.-=..-+ T Consensus 373 P~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ 452 (521) T protein:vir:81 373 PLSRSNLSDANMVIGGDGSEITRDELEFSKFIRTRQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYT 452 (521) T ss_pred ccccccCCCCcceeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchHH Confidence 9999965555443 3455 8889999999999877666666665 35565655432 46899999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-----------ccccCHHHHHHHh-cCCCCCCCCCCCC-Ccchhhc Q lcl|Aclame:pro 388 GTEKLTNAKTMGEINQTMLGSGD-----------NPAFSREEIRTAA-GYDNDDEEPLGEE-DGDEEDK 443 (449) Q Consensus 388 ekE~Aei~~~~A~a~~~~~~~g~-----------~~~~~~~e~r~~~-~~~~~~~~~~~~~-~~~ee~~ 443 (449) |-..+|+...+..+++.+-.-.. +--.|.+|+.++- .++....++.-.. ++++++= T Consensus 453 ElKe~Eil~~R~~~l~~~dpyvGky~s~dyi~k~ILr~tDeei~~~~k~I~~E~~~~~~~~p~~~~~~f 521 (521) T protein:vir:81 453 EVKDAEILERRIGLIERITPYIGKYFSNQTVMRDILKYTDDQMDTEKKQIEEEANDPRFKQTPDEIEDF 521 (521) T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHhhCCCCCCCcccccCC Confidence 99999999999888776532110 0012444443221 0111111111111 1111111 No 200 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=97.68 E-value=2.9e-05 Score=45.47 Aligned_cols=414 Identities=14% Similarity=0.137 Sum_probs=182.9 Q ss_pred CchhhHHHHHhhhH------------HHHHHH-H-HHHHHHHHhhcCcccccc-hhccCC---cccCCHHHHHHHHHc-- Q lcl|Aclame:pro 1 MTDKLTLAVNHALN------------DARMAR-A-RMGLMVPTMGLDNKRHSA-WCEYGF---PELVTYENLYSLYRR-- 60 (449) Q Consensus 1 ~~~~~~~~v~~~~~------------~~~~~~-~-~~~~~~~~~g~~t~r~~~-~~~~~~---~~~~~~~~l~~~Y~~-- 60 (449) -++-|++--.-+.. +.+++. + .+|....-.|.++.-... +.++.. +..-+-.+|-..||+ T Consensus 6 ~~~~l~~~~~~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~y~~~e~~~~~~~eLI~~YR~ma 85 (524) T protein:vir:98 6 FGNVLSFFKNFAREDEIELEQQLKNDTGSVAPPKNNDGAYEIETDLNNQKYAGVFQQFYSGQDPAIQNKEQLINTYRGIM 85 (524) T ss_pred hhhHHHHhhhhhhhhhhhHhhhhcCCcccccCCCCCCCceeecCCCCcceecceeeeeccccccccchHHHHHHHHHHHh Confidence 12222211100000 000000 0 000000011112111110 111110 112245678888876 Q ss_pred -CchhHHHHhhhHHHHhcC-----CcEEecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEec Q lcl|Aclame:pro 61 -GGIAHGAVEKLVGKCWQT-----NPEIIEGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIR 133 (449) Q Consensus 61 -~~l~r~iVd~pa~d~~r~-----~~~i~~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~ 133 (449) ++.+..+|+.++.||+-. .+++.-....-.......|-.+.+.+.. .++.++..+..|.--+.|--++-..++ T Consensus 86 ~~pEvd~Av~eIVneaIv~~~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid 165 (524) T protein:vir:98 86 SYPEVENAVSEIIDDAIVNEQGKDIITMDLAKTNFSKAIQDKIVEEFDNVLNIYDFDNMGARLFRDWYVDSRIYFHKIMH 165 (524) T ss_pred hccchhhHHHhhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceeEEEEEEc Confidence 788999999999998532 1112111000001111122222222211 144555556655444445444444443 Q ss_pred CCCcccccccccCceeeEEEeccccCChhh-hh---ccccccccCCc-eeEEeeeccc----C----CCccceEEcccee Q lcl|Aclame:pro 134 DEKDWNLPATKGRGLQKVSVSWAGSLKVAE-WD---TGINSKTYGQP-KLWKYTERLP----N----GSSRRVDIHPDRV 200 (449) Q Consensus 134 d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~-~~---~Dp~s~~yg~P-~~y~i~~~~~----~----~~~~~~~IH~SRl 200 (449) +.. .+||..++-+++..+..-. .. .|..+..|..- ++|..++... + .++++++||.+=+ T Consensus 166 -~~~-------~kGI~ELr~lDPr~i~~vr~~~~~~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI 237 (524) T protein:vir:98 166 -KDE-------SKGIRELRQLDPRCMELIRESITETLDGGVKVFRGYREFFVYSAPKAGYTYNGQIYQANQKIKIPRSAI 237 (524) T ss_pred -CCC-------CcceeeeeeeCCccceeeeeccccccccchhhccceeeeeeeccCCCccccccceecCCCceeechhhe Confidence 222 1467766666665553321 11 12122222222 2333321111 1 1345678888765 Q ss_pred eeccCCC----CCcchhHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhhccChHHHHHH Q lcl|Aclame:pro 201 FILGDYS----EDAIGFLEPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLYGVSIDELQDK 270 (449) Q Consensus 201 i~~~~~~----~~G~s~l~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~ 270 (449) +.-..+- ..=+|.|+++ +|.|+-++.+ -.+|+ +....++.+ ++-+|+... .++- T Consensus 238 vy~hSGL~d~~~~iisyLhkAiKp~NQLkm~EDA-----lVIYR-----itRAPeRRvFYIDvGnlPk~K---AeqY--- 301 (524) T protein:vir:98 238 VYAHSGLEDCSNNIIGYLHRAVKPANQLRLLEDA-----MVIYR-----ITRAPERRVFYIDVGQMGGNK---ATQY--- 301 (524) T ss_pred eeeccCcccCCCCeeeehhHhhHhHHhhHHHHhh-----HHHHh-----hhccccceEEEEecCCCCchh---HHHH--- Confidence 4432211 1123667654 3334333332 12232 122222222 233333321 1221 Q ss_pred HHHHHHHHhc------ccc-------ceee-----------cCCCceEEeec--ccCChHHHHHHHHHHHHhhhcCCcee Q lcl|Aclame:pro 271 FNEVAGEINR------GND-------VLMT-----------TQGATVTPLVT--SVADPTATYNVNLQTAAAGVDIPTRI 324 (449) Q Consensus 271 ~~~~~~~~~~------~~~-------~~l~-----------~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~IP~t~ 324 (449) ++.++..+.+ .++ .+-+ +.+.|++++.. +|+-++|+ ..|...+=-|.++|+++ T Consensus 302 l~~im~k~kNklvYDa~TGevrddrk~msMlEDyWLpRReGgrgTEItTLpggqnlgem~DV-~YF~kkLy~aLnVP~sR 380 (524) T protein:vir:98 302 VNNIAQGLKNRVVYDARTGTVKNQQNNLSMTEDYWLMRRDGKAITEVSTLPGGQNFSDMDDI-KWFNRKLYEALRVPLSR 380 (524) T ss_pred HHHHHHhcCceeEeeccCceeeccccccchhhhhcccccCCCCccceeeccccCCcChHHHH-HHHHHHHHHHhCCCcee Confidence 2222222210 000 0000 23456777644 46667665 68889999999999999 Q ss_pred ee-ccCc-cccccch---hHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcCCCC------CCceEEeCCCCCCCHHHHH Q lcl|Aclame:pro 325 LI-GNQQ-AERSSTE---DQKYFNARCQSRRVDLSFEIEDFCD-KLIELKIIDAV------AKKAVIWDDLNEQTGTEKL 392 (449) Q Consensus 325 L~-Gqs~-gg~~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~-~l~~~~~~~~~------~~~~~~f~pL~~~sekE~A 392 (449) |= ..+. ....|+| |.-.|...|.++|..+..-..+.|. .|++-++..+. ..+.|+|.-=..-+|-..+ T Consensus 381 l~~~~~~f~~Gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~ 460 (524) T protein:vir:98 381 MPRDDGGMQIGGGGEITRDELKFSKFIRTLQIQFSPVLSDPLKTNLIAKKIITEDEWEENVSKISFVFQQDSYYAEVKDI 460 (524) T ss_pred ccCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchHHHHHHH Confidence 94 3211 1112444 8889999999999877666666665 35565655432 4689999999999999999 Q ss_pred HHHHHHHHHHHHHHHcCCc-----------cccCHHHHHHHhc-CC-----CCCCCCCCCCCcc Q lcl|Aclame:pro 393 TNAKTMGEINQTMLGSGDN-----------PAFSREEIRTAAG-YD-----NDDEEPLGEEDGD 439 (449) Q Consensus 393 ei~~~~A~a~~~~~~~g~~-----------~~~~~~e~r~~~~-~~-----~~~~~~~~~~~~~ 439 (449) |+...+..+++.+-.-+.- --.|.+|+.+... ++ +.-.+|..++++- T Consensus 461 Eil~~R~~~l~~~dpyvGky~s~dyi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~p~~e~~~f 524 (524) T protein:vir:98 461 EILERRLNLMSQVEGVVGKYVSHKYIMKEILRMSDEDIDEQAKLIEEESKEERFKNPEAEEENF 524 (524) T ss_pred HHHHHHHHHHHHhccccccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCcCCccccccC Confidence 9999998888765431100 1134444433210 01 1111111111111 No 201 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=97.66 E-value=3.2e-05 Score=45.23 Aligned_cols=298 Identities=11% Similarity=0.067 Sum_probs=126.5 Q ss_pred cEEEEEEecCCCcccccccccCceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeecc Q lcl|Aclame:pro 125 YAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILG 204 (449) Q Consensus 125 ga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~ 204 (449) -.=++....+| .+ .+..| .|+.+-+...+..++ +-+ ...+... ......+..+.+.+.+.+. T Consensus 1 v~Eivw~~~~g-~~--------~~~~l--~~r~~~~~~~f~~~~---~~~-l~~~~~~---~~~g~~~~~lp~~kfi~~~ 62 (355) T protein:vir:78 1 MFEQVYRIENG-RA--------RLGKL--AWRPPRTISRFDVAP---DGG-LVAIEQW---GVFGKATVRIPVDRLVVFV 62 (355) T ss_pred CeEEEEEeeCC-eE--------EEeee--eecCccceeeeeecc---CCc-eeEEEec---CCCCCCcceeccCCEEEEE Confidence 01111111111 00 11112 233222222222221 111 1111111 0111234566777766653 Q ss_pred ----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHH-hhhccChHHHHHHHHHHHHHHh Q lcl|Aclame:pro 205 ----DYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLA-SLYGVSIDELQDKFNEVAGEIN 279 (449) Q Consensus 205 ----~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~ 279 (449) .+..+|.++++.||....--.....-++.-+-+........+........+.. ........+..+.+..++..+. T Consensus 63 ~~~~~g~p~G~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~ 142 (355) T protein:vir:78 63 NEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFR 142 (355) T ss_pred eCCCCCCccchhhHHHHHHHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHHHHHHHHHHHHhh Confidence 34567999999999876543333333333333322121111111000000000 0000111223334444455555 Q ss_pred cccc-ceeecCCCceEEeeccc--CChHHHHHHHHHHHHhhhcCCceeeeccCcc-cccc-ch-hHHHHHHHHHHHHHhh Q lcl|Aclame:pro 280 RGND-VLMTTQGATVTPLVTSV--ADPTATYNVNLQTAAAGVDIPTRILIGNQQA-ERSS-TE-DQKYFNARCQSRRVDL 353 (449) Q Consensus 280 ~~~~-~~l~~~~ed~~~~~~~l--sgl~d~~~~~~~~iaaas~IP~t~L~Gqs~g-g~~s-~e-D~~nyyd~I~~~Qe~~ 353 (449) .+.+ .+++.++.+++.+++.- +....+++..-.+||-+.--. |.-.+.+.+ |..+ ++ =....-+.+.+....+ T Consensus 143 ~g~~a~~iip~g~~ie~~ea~g~~~~~~~~i~~~d~~Isk~iLGq-tlTs~~~~~gGS~Alg~vh~~v~~~~~~aD~~~i 221 (355) T protein:vir:78 143 AGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAH-FLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHI 221 (355) T ss_pred CCcceeEeecCCceEEEeecCCCcccHHHHHHHHHHHHHHHHhhh-hhccccCCccchhhHHHHHHHHHHHHHHHHHHHH Confidence 5543 45677888888887652 345667777777776443211 111111112 2222 23 2455667777766555 Q ss_pred hHHHHH-HHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccC--HHHHHHHhcCCCCCC Q lcl|Aclame:pro 354 SFEIED-FCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFS--REEIRTAAGYDNDDE 430 (449) Q Consensus 354 ~~p~~~-~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~--~~e~r~~~~~~~~~~ 430 (449) ..-+.+ ++..|+...++....--.|+|...- + ..++.|++++.++++|...... .+.+|+..+++.+.+ T Consensus 222 ~~~ln~~li~~l~~lN~~~~~~~P~~~~~~~~---~-----~~~~~a~~~~~l~~~G~~~~~~~~~~~~~e~~gip~p~~ 293 (355) T protein:vir:78 222 ADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLG---K-----EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAE 293 (355) T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCEEEecCcC---h-----hHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCC Confidence 555654 5666777777654333456674321 1 1234688999999998432111 245889888864432 Q ss_pred CCCCCCCcch------------------hhcccccCC Q lcl|Aclame:pro 431 EPLGEEDGDE------------------EDKATDSAA 449 (449) Q Consensus 431 ~~~~~~~~~e------------------e~~~~~~~a 449 (449) .........+ +..+...+| T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~a 330 (355) T protein:vir:78 294 RDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRA 330 (355) T ss_pred CCcccCCccccccccccccccCCccccccccccCCCC Confidence 1111000000 000001111 No 202 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=97.61 E-value=3.3e-05 Score=45.18 Aligned_cols=402 Identities=14% Similarity=0.124 Sum_probs=180.4 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhc-cC----CcccCCHHHHHHHHHc---CchhHHHHhhhH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCE-YG----FPELVTYENLYSLYRR---GGIAHGAVEKLV 72 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~-~~----~~~~~~~~~l~~~Y~~---~~l~r~iVd~pa 72 (449) +..+..+ |-...+ .+|....-++.++. ...+. ++ ......-++|-.-||+ ++.+..+|+.++ T Consensus 16 ~~~~~~S-~~~p~~-------~DGa~~i~~~~~~~--~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd~Av~eIv 85 (511) T protein:vir:56 16 EKNPVRS-FSAPDN-------VDGAKEIHTNLLAP--QLGHAIIPSDAQSEGTIPVKELIKSYRALAEYHEVDDAIQEIV 85 (511) T ss_pred ccCCccc-ccCCCC-------CCCceEEecccccc--eecceeccccccccCccchHHHHHHHHHHhhccchhhHHHHhh Confidence 2222221 111111 11111111111111 01110 11 1122233688888886 788999999999 Q ss_pred HHHhcC-----CcEEe-cCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEecCCCccccccccc Q lcl|Aclame:pro 73 GKCWQT-----NPEII-EGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKG 145 (449) Q Consensus 73 ~d~~r~-----~~~i~-~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~ 145 (449) .||+-. .+++. ...+-. ......|-.+.+.+.. .++.++..+..|.--+.|--+.-..+ |+ . T Consensus 86 ne~iv~d~~~~pV~l~ld~~~~s-~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fHkii-d~---------k 154 (511) T protein:vir:56 86 DEAIVYENDKEVVWLNLDNTDFS-ENIKAKINEEFDRVVSLLQMRKHGYKWFRKWYVDSRIYFHKIL-DK---------D 154 (511) T ss_pred cceeEecCCCceEEEEecccCcc-hHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEe-cc---------c Confidence 998632 12221 111100 1111122222222211 13455555555433333432222233 32 2 Q ss_pred CceeeEEEeccccCChh-hhhccccc--cccC-CceeEEeeecc---------cCCCccceEEccceee--ecc-----C Q lcl|Aclame:pro 146 RGLQKVSVSWAGSLKVA-EWDTGINS--KTYG-QPKLWKYTERL---------PNGSSRRVDIHPDRVF--ILG-----D 205 (449) Q Consensus 146 ~~l~~i~v~~~~~i~~~-~~~~Dp~s--~~yg-~P~~y~i~~~~---------~~~~~~~~~IH~SRli--~~~-----~ 205 (449) +||..|+.+++..+..- ...+++.. ..+. --++|..++.. .+...++++||.+=+. |+. . T Consensus 155 ~GI~eLr~lDPr~i~~vr~i~~~~~~~~~v~~~~~ey~~Y~~~~~~~~~~~~~~~~~~~~vkI~~daI~y~hSGL~d~~~ 234 (511) T protein:vir:56 155 NNIIELRPLNPMKMELVREIQKETIDGVEVVKGTLEYYVYKQSDYKMPSWMSATNRAQTSFRIPKDAIVFAHSGLMRGCA 234 (511) T ss_pred cceeehhhcCcccchhhhhhhcccccccccccceeeeeEecCCCcccCcccccccccccceeechhheeeecccceeccC Confidence 36666665555554432 11121111 1111 12333333211 0112356778777652 221 2 Q ss_pred CCCCcchhHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhhccChHHHHHHHHHHHHHHh Q lcl|Aclame:pro 206 YSEDAIGFLEPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLYGVSIDELQDKFNEVAGEIN 279 (449) Q Consensus 206 ~~~~G~s~l~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 279 (449) +..-..|.|+++ +|.|+-++.+ -.+|+- ....++.+ ++-+|+... .++- ++.++.... T Consensus 235 ~~g~i~syLhkAiKp~NQLkm~EDA-----lVIYRi-----tRAPeRRvFYIDVGnLPk~K---AeqY---l~~iM~k~k 298 (511) T protein:vir:56 235 DDPYIIGYLDRAIKPANQLKMLEDA-----LVIYRL-----ARAPERRVFYVDVGNLPTQK---AQQY---VNGIMQNVK 298 (511) T ss_pred CCCeeeccchhhhHHHHhhHHHHhh-----HHHHhh-----hccccceEEEEecCCCCchh---HHHH---HHHHHHhcC Confidence 233367788764 3444444332 123321 11222221 233333221 1221 111111111 Q ss_pred c------cccc-------e-e----------ecCCCceEEeec--ccCChHHHHHHHHHHHHhhhcCCceeeecc-Cccc Q lcl|Aclame:pro 280 R------GNDV-------L-M----------TTQGATVTPLVT--SVADPTATYNVNLQTAAAGVDIPTRILIGN-QQAE 332 (449) Q Consensus 280 ~------~~~~-------~-l----------~~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~IP~t~L~Gq-s~gg 332 (449) + .++- + + -+.+.|++++.. +|+-++|+ ..|...+=.|.++|+++|=.. +++| T Consensus 299 NklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV-~YF~kKLy~aLnVP~SRl~~e~q~~~ 377 (511) T protein:vir:56 299 NRVVYDTQTGQVKNTTNAMSMLEDYYLPRREGSKGTEVSTLPGGQSLGDIEDV-LYFNRKLYKAMRIPTSRAASEDQTGG 377 (511) T ss_pred ceEEEeccCceeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHHHH-HHHHHHHHHHhCCCcccccCCCCccc Confidence 0 0000 0 0 023456777644 46666665 688899999999999999854 3333 Q ss_pred cc---cch---hHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcCCC------CCCceEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 333 RS---STE---DQKYFNARCQSRRVDLSFEIEDFCD-KLIELKIIDA------VAKKAVIWDDLNEQTGTEKLTNAKTMG 399 (449) Q Consensus 333 ~~---s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~-~l~~~~~~~~------~~~~~~~f~pL~~~sekE~Aei~~~~A 399 (449) ++ |+| |.-.|...|.++|..+..-..+.|. .|++-+...+ ..++.|+|.-=..-+|-..+|+...+. T Consensus 378 f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl 457 (511) T protein:vir:56 378 INFGQGAEITRDELKFTKFVKRLQTKFETVITDPLKHQLIVNNIITEEEWDANHEKLYVVFNQDSYFEEAKELEILNSRM 457 (511) T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHH Confidence 33 455 8889999999999877666666665 3555555443 247899999999999999999999998 Q ss_pred HHHHHHHHcCCccc------------cCHHHHHHHh-cCCCCCCCCCCCCCcchhhc Q lcl|Aclame:pro 400 EINQTMLGSGDNPA------------FSREEIRTAA-GYDNDDEEPLGEEDGDEEDK 443 (449) Q Consensus 400 ~a~~~~~~~g~~~~------------~~~~e~r~~~-~~~~~~~~~~~~~~~~ee~~ 443 (449) .+++.+-.-. .-- .|.+|+.+.- .++....++.-.. +|++= T Consensus 458 ~~l~~~dpyv-Gky~S~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~--~e~~f 511 (511) T protein:vir:56 458 NAMRDIQDYA-GKYYSHKYIQKNILRLSDDQITAMQSEIDEEETNPRFQQ--DDQGF 511 (511) T ss_pred HHHHHhcchh-ccccchHHHHHHHhccCHHHHHHHHHHHHHhhcCCCCCC--cccCC Confidence 8877653221 011 2333333221 0111111111100 00000 No 203 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=97.58 E-value=4.2e-05 Score=44.58 Aligned_cols=416 Identities=10% Similarity=0.045 Sum_probs=165.1 Q ss_pred CchhhHHH------------HHhhhHHHHHHHHH--HHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHH Q lcl|Aclame:pro 1 MTDKLTLA------------VNHALNDARMARAR--MGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHG 66 (449) Q Consensus 1 ~~~~~~~~------------v~~~~~~~~~~~~~--~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~ 66 (449) ||..|..- +..-....+..+.+ ..+..+.-..-..+++.+...+..+.... .-+.=-...+++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~YY~g~h~Il~r~~~~~~~~~~~~~d~~--~~nnki~~nf~k~ 78 (537) T protein:vir:78 1 MTSPLLNKPIDQLGGLLNTEITTYMASNHIKWAHIGENYYNQENDIEKSRIFYMNDKGQLREDNY--ASNVKISHGFFTE 78 (537) T ss_pred CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhccccccccccccccccc--ccccccccchHHH Confidence 66655311 11111111111100 11111110000111111111111111100 0001123578999 Q ss_pred HHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCc-cccccccc Q lcl|Aclame:pro 67 AVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKD-WNLPATKG 145 (449) Q Consensus 67 iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~-~~~Pl~~~ 145 (449) ||+..+.=++-+++++...++. +.+ ....+++++.......+.+..+..-.||.|+.++.++.... ....+++. T Consensus 79 Ivd~~~~yl~G~Pv~~~~~d~~-~~e----~~~~l~~~~~~~~~~~~~el~~~~s~~G~ay~~~y~de~~~~~~~~i~p~ 153 (537) T protein:vir:78 79 LVDQLAQYLLSNGVEVKVKDED-NTQ----LDEILQEYFDEDFQATIDTLVTNASKKGFEGIFARTTSEGKLKFQTVDGL 153 (537) T ss_pred HHHHHhhhhcccCceeecCcch-hHH----HHHHHHHHhhccHHHHHHHHHHHHhhcCeeEEEeeecCCCceEEEEEccc Confidence 9999999999999998654432 222 22333444334455566677777778999999999863322 12212211 Q ss_pred C---------c-eeeEEEeccccCChhhhhcc-ccccccCCce--eEEee---------------------------ecc Q lcl|Aclame:pro 146 R---------G-LQKVSVSWAGSLKVAEWDTG-INSKTYGQPK--LWKYT---------------------------ERL 185 (449) Q Consensus 146 ~---------~-l~~i~v~~~~~i~~~~~~~D-p~s~~yg~P~--~y~i~---------------------------~~~ 185 (449) . . ...++++............. ..-..++.+. +|.+. ... T Consensus 154 ~~~pv~d~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evyt~~~i~~y~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 233 (537) T protein:vir:78 154 TLIPVFDDYGVLKMIIRWYSEIRYSTKQQSTETIWHADVWNEEAVCYYIQDDEGVSTTYKLDEAYNPNPAPHVLAIEEST 233 (537) T ss_pred eeEEEEcCCCCceeEEEEEeeeeccccccCcceEEEEEEEcCCcEEEEEecCCcccccccccccccccccceeeeccccc Confidence 1 1 11122211000000000000 0000000000 00000 000 Q ss_pred cC----CCccceEEcccee---eeccCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHh Q lcl|Aclame:pro 186 PN----GSSRRVDIHPDRV---FILGDYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLAS 258 (449) Q Consensus 186 ~~----~~~~~~~IH~SRl---i~~~~~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~ 258 (449) .. .......-|.=-. +.|.+ ...|.|.++.+-.-+..++......+..+-..+...|.+. + T Consensus 234 ~~~~~~~~~~~~~~~~~g~iPvv~f~n-n~~~~sd~e~v~~LiDayd~~~S~~an~~~~~~~~ilvi~--------g--- 301 (537) T protein:vir:78 234 DADFEDTDGYQVLGRSYSKFPFQLLYN-NKDGMSDVKRVKSIIDDYDVMNCFLSNNLQDFSEAIYVVK--------G--- 301 (537) T ss_pred cccccccccccccccCCcceeEEEecc-CccCCCchhhhHHHHHHHHHHHHhhhhHHHHhcCceeeee--------c--- Confidence 00 0000001122221 22222 2347788888777777777776666655543332222221 1 Q ss_pred hhccChHHHHHHHHHHHHHHhccccceeec-CCCc--eEEeecccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccc Q lcl|Aclame:pro 259 LYGVSIDELQDKFNEVAGEINRGNDVLMTT-QGAT--VTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSS 335 (449) Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ed--~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s 335 (449) ..+....+... .++ ..+++.++ ++.+ |-+.+.+..+....++...+.|--.+..|-+ ...-+| |+ T Consensus 302 ~~~~~~~~~~~-------~l~-~~~~i~v~~d~~~v~~l~~~~~~~~~e~~ld~L~~~I~~~s~~~~~---~~~~~g-n~ 369 (537) T protein:vir:78 302 FSGDSTDKLRQ-------NIK-AKKMIGVNGDNAGMEIQTVSIPYEARKAKMDIDVENIYRSGMGFNS---TAVGDG-NV 369 (537) T ss_pred CCCccchhHHH-------HHh-hcCceeecCCCCceeEEEecCCHHHHHHHHHHHHHHHHHhcCCCCC---cccccc-CC Confidence 00111111111 111 12222233 3333 5556667778999999999988877766653 333334 44 Q ss_pred ch-hHHH-HHHH---HHHHHHhhhHHHHHHHHHHHHH-hc-C--C-CCCCceEEeCCCCCCCHHHHHHHHHHHHHH--HH Q lcl|Aclame:pro 336 TE-DQKY-FNAR---CQSRRVDLSFEIEDFCDKLIEL-KI-I--D-AVAKKAVIWDDLNEQTGTEKLTNAKTMGEI--NQ 403 (449) Q Consensus 336 ~e-D~~n-yyd~---I~~~Qe~~~~p~~~~l~~l~~~-~~-~--~-~~~~~~~~f~pL~~~sekE~Aei~~~~A~a--~~ 403 (449) +| =++- |... +..++..+.+.+.+++..++.. +. + . ...++.|.|++-...+++|.|++..+..++ .+ T Consensus 370 SGvAlk~~~~~l~~ka~~ke~~f~~~l~~~~~~i~~~~~~~~~~~~d~~~i~i~f~~~~P~n~~e~a~~~~~l~~~giiS 449 (537) T protein:vir:78 370 TNVVIKSRYTLLAMKARKMETSLRKVLRWCADMVVSDIALRGLGEYDSNDICFEIEPHVLANELDIATTRKTEAETEALK 449 (537) T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccceeeEEeccCCCCCHHHHHHHHHHHHhcCcch Confidence 55 3443 2222 2222222333344444333322 11 1 1 234789999999999999999987765432 11 Q ss_pred --HHHHcCCccccC-HHHHH---HHhc-------------------CCCCCCC---C---C-CCCCcchhhcccccCC Q lcl|Aclame:pro 404 --TMLGSGDNPAFS-REEIR---TAAG-------------------YDNDDEE---P---L-GEEDGDEEDKATDSAA 449 (449) Q Consensus 404 --~~~~~g~~~~~~-~~e~r---~~~~-------------------~~~~~~~---~---~-~~~~~~ee~~~~~~~a 449 (449) +++.. .+.++ +++.+ ++.. ..+..++ + . ..+.+|+....+++.- T Consensus 450 ~eT~l~~--~p~vdd~e~ek~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 525 (537) T protein:vir:78 450 IGNIMTV--APRIGDDETLKLIAEELDLDYNELKDALAEQDAQSLDVSPDVQAMLDGLPVNANQPPVDPNQPVADPNV 525 (537) T ss_pred HHHHHHh--CCCCCCHHHHHHHHHHHHhhhhhhhhhhhhhcccccCcCcchhhhcCCCCCCCCCCCCCccCCCCCCCC Confidence 22221 12232 22221 1100 0000000 0 0 0001111111111111 No 204 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=97.48 E-value=5.9e-05 Score=43.77 Aligned_cols=394 Identities=10% Similarity=0.032 Sum_probs=165.9 Q ss_pred Cchhh-------HHHHHhhhHHHHHHHHHHHHHH-HHhhcCccc-ccchhccCCcccCCHHH-HHHHHHcCchhHHHHhh Q lcl|Aclame:pro 1 MTDKL-------TLAVNHALNDARMARARMGLMV-PTMGLDNKR-HSAWCEYGFPELVTYEN-LYSLYRRGGIAHGAVEK 70 (449) Q Consensus 1 ~~~~~-------~~~v~~~~~~~~~~~~~~~~~~-~~~g~~t~r-~~~~~~~~~~~~~~~~~-l~~~Y~~~~l~r~iVd~ 70 (449) |..=| +++....-.+..++..+..+.. +..|+...| ..............+.+ ++.|-.++.-...++.+ T Consensus 1 m~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iL~~a~~gd~~~~~~L~~dm~~~D~hi~s~l~~ 80 (512) T protein:vir:19 1 MGRILDISGQPFDFDDEMQSRSDELAMVMKRTQEHPSSGVTPNRAAQMLRDAERGDLTAQADLAFDMEEKDTHLFSELSK 80 (512) T ss_pred CcceeCCCCCccccccccccccchhcccchhhccccccCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 22111 0000000011112222222221 222322111 11111111111111112 23343455666666666 Q ss_pred hHHHHhcCCcEEecCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCc Q lcl|Aclame:pro 71 LVGKCWQTNPEIIEGDD--ADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRG 147 (449) Q Consensus 71 pa~d~~r~~~~i~~~~~--~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~ 147 (449) --.-.+..-|+|..+.+ +++.+....++..+..+ .-+..+...+-.+.+||+|++=|.-. ++..+ . T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~---~~f~~~~~~lldA~~~G~s~~Ei~w~~~~g~~--------~ 149 (512) T protein:vir:19 81 RRLAIQALEWRIAPARDASAQEKKDADMLNEYLHDA---AWFEDALFDAGDAILKGYSMQEIEWGWLGKMR--------V 149 (512) T ss_pred HHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcC---CCHHHHHHHHHhhhhhcceeeeeEeeeeCCce--------e Confidence 66666666667764432 22222222233333221 11344444444678899999766432 22221 1 Q ss_pred eeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeecc----CCCCCcchhHHHHHHHHHH Q lcl|Aclame:pro 148 LQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILG----DYSEDAIGFLEPAYNAFVS 223 (449) Q Consensus 148 l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~----~~~~~G~s~l~~~~~~l~~ 223 (449) +..|.+..+..+. .|+... . .+.. .++...|..+++-+.+.+. .+..+|.++++.||....- T Consensus 150 ~~~~~~r~~~~f~-----~~~~~~----~---~lr~--~~~~~~G~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~f 215 (512) T protein:vir:19 150 PVALHHRDPALFC-----ANPDNL----N---ELRL--RDASYHGLELQPFGWFMHRAKSRTGYVGTNGLVRTLIWPFIF 215 (512) T ss_pred eeeeeeeccccce-----eccCCC----c---EEEe--cCCCCCceeecCCceEEEeccCCCCCcccccHHHHHHHHHHH Confidence 2222222221111 111100 0 0100 0112224445555444432 3456789999999886543 Q ss_pred HHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceeecCCCceEEeecccCCh Q lcl|Aclame:pro 224 LEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSVADP 303 (449) Q Consensus 224 ~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ed~~~~~~~lsgl 303 (449) -..+..-++.-+-+...-....++ .....++..+.+.+.+..+.+. ..+++.++.+++.+++.=++. T Consensus 216 K~~~~~~w~~f~E~yG~P~~igky------------~~~a~~~ek~~L~~al~~~~~~-a~~iiP~~~~ie~~ea~~~~~ 282 (512) T protein:vir:19 216 KNYSVRDFAEFLEIYGLPMRVGKY------------PTGSTNREKATLMQAVMDIGRR-AGGIIPMGMTLDFQSAADGQS 282 (512) T ss_pred HHHHHHHHHHHHHHcCCCeeEEec------------CCCCCHHHHHHHHHHHHHHhhC-cEEEecCCceEEEeecCCCCH Confidence 333322232222211111111111 0112344455555566665443 456777888899888753333 Q ss_pred ---HHHHHHHHHHHHhhhcCCceeeeccC-c-----cccccch--hHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhcCC Q lcl|Aclame:pro 304 ---TATYNVNLQTAAAGVDIPTRILIGNQ-Q-----AERSSTE--DQKYFNARCQSRRVDLSFEIE-DFCDKLIELKIID 371 (449) Q Consensus 304 ---~d~~~~~~~~iaaas~IP~t~L~Gqs-~-----gg~~s~e--D~~nyyd~I~~~Qe~~~~p~~-~~l~~l~~~~~~~ 371 (449) ..+++..-.+||-+ ++||. + +|..+.+ -.....+.+.+....+..-+. .++..|+...++. T Consensus 283 ~~y~~li~~~d~~Isk~-------iLGqtlTs~~g~~Gs~a~~~vh~ev~~di~~aDa~~i~~tln~~li~~l~~~N~~~ 355 (512) T protein:vir:19 283 DPFMAMIGWAEKAISKA-------ILGGTLTTEAGDKGARSLGEVHDEVRREIRNADVGQLARSINRDLIYPLLALNSDS 355 (512) T ss_pred HHHHHHHHHHHHHHHHH-------HhhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC Confidence 34444455566643 34432 1 1222222 244566667776666666665 3666777777763 Q ss_pred CCC---CceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCCC-CCC----CCcchhhc Q lcl|Aclame:pro 372 AVA---KKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP-LGE----EDGDEEDK 443 (449) Q Consensus 372 ~~~---~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~~-~~~----~~~~ee~~ 443 (449) ..+ --.|+|..--. +-.++.++++.++. .|. .++.+.+++..+++.+.+.. ... ........ T Consensus 356 ~~~~~~~p~~~f~~~e~-------eDl~~~a~~~~~l~-~G~--~i~~~~i~e~~Gip~~~~~e~~~~~~~~~~~~~~~~ 425 (512) T protein:vir:19 356 TIDINRLPGIVFDTSEA-------GDITALSDAIPKLA-AGM--RIPVSWIQEKLHIPQPVGDEAVFTIQPVVPDNGSQK 425 (512) T ss_pred CCCccccceEEecCCCh-------hhHHHHHHHHHHHh-cCC--CCCHHHHHHHhCCCCCCCccccccCCCccccccccc Confidence 211 12445533322 22244566666664 552 46889999999986543211 000 00000000 Q ss_pred ccccCC Q lcl|Aclame:pro 444 ATDSAA 449 (449) Q Consensus 444 ~~~~~a 449 (449) .....| T Consensus 426 ~~~~~~ 431 (512) T protein:vir:19 426 EAALSA 431 (512) T ss_pred cccccc Confidence 000000 No 205 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=97.39 E-value=7.8e-05 Score=43.10 Aligned_cols=403 Identities=10% Similarity=-0.004 Sum_probs=162.4 Q ss_pred CchhhHHHHHh--------hhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhH Q lcl|Aclame:pro 1 MTDKLTLAVNH--------ALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLV 72 (449) Q Consensus 1 ~~~~~~~~v~~--------~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa 72 (449) |-.|-+.-++. .......+..+..+.+-..++-+..... ...-.+. +..-++.|.+ +.-...++++-- T Consensus 1 m~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~iLr~~~--~~~ly~~m~~-D~hi~s~l~~Rk 76 (448) T protein:vir:79 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFD-ELLQGKD--GLLVYHKMLS-DGTVKNALNYIF 76 (448) T ss_pred CCCCCCCCccccCcccccccccchhhhhhhhhhcccccccccccchh-Hhhcccc--chHHHHHHhh-ChHHHHHHHHHH Confidence 55444322110 0111222333334443333333322111 1111111 1233455554 677777888888 Q ss_pred HHHhcCCcEEecCCChhhHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHhccccccEEEEEEec---CCCccccccccc Q lcl|Aclame:pro 73 GKCWQTNPEIIEGDDADDSEDET-SWEKKSKQV---FTNRLWRSFAEADRRRLVGRYAGILLHIR---DEKDWNLPATKG 145 (449) Q Consensus 73 ~d~~r~~~~i~~~~~~~~~~~~~-~~e~~~~~l---~~~~~~~~~~ea~~~~rl~Gga~i~i~i~---d~~~~~~Pl~~~ 145 (449) .-.++.-|+|..+.++.+..... .++..++.. ...--|..+...+-.+.+||+|++=+.-. ||. + .|- T Consensus 77 ~av~~~~w~v~p~~~~~~~~~~ae~v~~~l~~~~~~~~~~~f~~~~~~~lda~~~G~s~~Eivw~~~~~g~-~-~~~--- 151 (448) T protein:vir:79 77 GRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYENAYIYGMAAGEIVLTLGADGK-L-ILD--- 151 (448) T ss_pred HHHhcCCceEecCCCCHHHHHHHHHHHHHhhhhhhhhccCCHHHHHHHHHHhhhhcceeEEEEeeecCCCc-e-ecc--- Confidence 88888888886443332222221 222222110 00011344444455678999999765442 222 1 110 Q ss_pred CceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCC--ccceEEccceeeec---cCCCCCcchhHHHHHHH Q lcl|Aclame:pro 146 RGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGS--SRRVDIHPDRVFIL---GDYSEDAIGFLEPAYNA 220 (449) Q Consensus 146 ~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~--~~~~~IH~SRli~~---~~~~~~G~s~l~~~~~~ 220 (449) .| .++.+-+...+..|+. +.+..........++. ..++.+...+++++ ..+..+|.++++.||.. T Consensus 152 ----~l--~~r~~~~~~~f~~~~d----~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~~g~p~g~gLlr~~~w~ 221 (448) T protein:vir:79 152 ----KI--VPIHPFNIDEVLYDEE----GGPKALKLSGEVKGGSQFVSGLEIPIWKTVVFLHNDDGSFTGQSALRAAVPH 221 (448) T ss_pred ----cc--cccCCccccceeeecC----CceEEeecCCcccccccCCCccccccceEEEEecCccCCcccchhHHHHHHH Confidence 01 1111111111111110 1111111100000000 01112222222222 22356799999999986 Q ss_pred HHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc-ceeecCCCceEEeecc Q lcl|Aclame:pro 221 FVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND-VLMTTQGATVTPLVTS 299 (449) Q Consensus 221 l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ed~~~~~~~ 299 (449) ..--..+..-++.-+-+...-....++.. .....++..+.+.+++..+..+.+ .+++.++.+++.+++. T Consensus 222 ~~fK~~~~~~w~~f~E~yG~P~~vgky~~----------ga~~~~~~~~~l~~av~~i~~g~~a~~iiP~~~~ie~~ea~ 291 (448) T protein:vir:79 222 WLAKRALILLINHGLERFMIGVPTLTIPK----------SVRQGTKQWEAAKEIVKNFVQKPRHGIILPDDWKFDTVDLK 291 (448) T ss_pred HHHHHHHHHHHHHHHHHcCCceEEEecCC----------CCCcCHHHHHHHHHHHHHHhcCCceEEEecCCceEEEEecC Confidence 54333332222222211111111111100 001112334445555555544443 4567778888888776 Q ss_pred cC--ChHHHHHHHHHHHHhhhcCCceeeecc----Cc-ccccc-c-hhH-HHHHHHHHHHHHhhhHHHHH-HHHHHHHHh Q lcl|Aclame:pro 300 VA--DPTATYNVNLQTAAAGVDIPTRILIGN----QQ-AERSS-T-EDQ-KYFNARCQSRRVDLSFEIED-FCDKLIELK 368 (449) Q Consensus 300 ls--gl~d~~~~~~~~iaaas~IP~t~L~Gq----s~-gg~~s-~-eD~-~nyyd~I~~~Qe~~~~p~~~-~l~~l~~~~ 368 (449) -+ ...++++..-.+||-+ ++|| .. ||.++ . ++. ....+.+.+.-..+..-+.+ +|..|+... T Consensus 292 ~~~~~~~~~i~~~d~~Isk~-------iLGqtlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~li~~l~~lN 364 (448) T protein:vir:79 292 SAMPDAIPYLTYHDAGIARA-------LGIDFNTVQLNMGVQAINIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPN 364 (448) T ss_pred CCcccHHHHHHHHHHHHHHH-------HhhhhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 33 2344555555555532 3343 11 22211 1 222 22334444433334344443 455677777 Q ss_pred cCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCC--CCCCCCcchhhcccc Q lcl|Aclame:pro 369 IIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEE--PLGEEDGDEEDKATD 446 (449) Q Consensus 369 ~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~--~~~~~~~~ee~~~~~ 446 (449) ++....-=.|.|... |..|+ ++.|++++++++.+ ....+-+|+..+...+.+. +......+....+.+ T Consensus 365 fg~~~~~P~~~f~~~------e~~Dl-~~~a~~~~~l~~~~---~~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~~ 434 (448) T protein:vir:79 365 WPSATRFPRLTFEME------ERNDF-SAAANLMGMLINAV---KDSEDIPTELKALIDALPSKMRRALGVVDEVREAVR 434 (448) T ss_pred CCCcCCCcEEEecCC------ChHHH-HHHHHHhhhhhccc---hhhHHHHHHhhcCCCCCCCccccccCCCCccccccc Confidence 654322125555322 22232 34678888887664 2223345666555433322 222222233333444 Q ss_pred cCC Q lcl|Aclame:pro 447 SAA 449 (449) Q Consensus 447 ~~a 449 (449) ..| T Consensus 435 ~~~ 437 (448) T protein:vir:79 435 QPA 437 (448) T ss_pred CCc Confidence 444 No 206 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=97.08 E-value=0.00018 Score=41.10 Aligned_cols=398 Identities=13% Similarity=0.052 Sum_probs=164.6 Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCc---------ccCCHHHHHHHHHcC----------ch---h Q lcl|Aclame:pro 7 LAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFP---------ELVTYENLYSLYRRG----------GI---A 64 (449) Q Consensus 7 ~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~---------~~~~~~~l~~~Y~~~----------~l---~ 64 (449) |+-+ +-. .+..++-..+.-++| |...|..+.++|..+ +- . T Consensus 1 ~~~~-----------~~~-------~~~~~~~~~g~~~~p~~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~~~~ 62 (527) T protein:vir:10 1 MGQD-----------KRQ-------YGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQ 62 (527) T ss_pred CCcc-----------ccc-------cCCCcCcCCccccCcccCCHHHHHHHHHHHHHHHHhcCchhheeeecCCcccccc Confidence 1111 100 111112222222333 233456788888774 11 1 Q ss_pred HHHHhhhHHHHhcCCcEEec-CCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEecCCCc----c Q lcl|Aclame:pro 65 HGAVEKLVGKCWQTNPEIIE-GDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIRDEKD----W 138 (449) Q Consensus 65 r~iVd~pa~d~~r~~~~i~~-~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~----~ 138 (449) |.+++.-..-.+=..-+|+. |.+......-...+..++.++.+ .+..++.++.+|+-+-|.+++.+.-+.++. + T Consensus 63 r~~~~ps~~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~ 142 (527) T protein:vir:10 63 RPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIKVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRL 142 (527) T ss_pred ceeeehhhHHhhCCcceeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCc Confidence 33333333333322223322 21211111112234444544444 677889999999999999988887654432 1 Q ss_pred c-ccccc--------c---CceeeEEEe--ccccCChhh-----------hhc-cccccc-cCCceeEEeee---cccC- Q lcl|Aclame:pro 139 N-LPATK--------G---RGLQKVSVS--WAGSLKVAE-----------WDT-GINSKT-YGQPKLWKYTE---RLPN- 187 (449) Q Consensus 139 ~-~Pl~~--------~---~~l~~i~v~--~~~~i~~~~-----------~~~-Dp~s~~-yg~P~~y~i~~---~~~~- 187 (449) + .+.|+ . ..+..++.. |+..-.+.. +.- |-..|- +|. .+|.... ..+. T Consensus 143 ~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~-~~yt~~~w~lg~w~d 221 (527) T protein:vir:10 143 SLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGA-IKYTEELYEPGKWDD 221 (527) T ss_pred eEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcc-eeeeeceeecccccc Confidence 1 12222 1 234444434 332222221 011 222222 222 2333210 0000 Q ss_pred ------------CCccceEEccce-------eeeccC----CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh Q lcl|Aclame:pro 188 ------------GSSRRVDIHPDR-------VFILGD----YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLN 244 (449) Q Consensus 188 ------------~~~~~~~IH~SR-------li~~~~----~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~ 244 (449) -...+..+|+.= +++|++ +..||.|-|+.+..-+..++++. +-.+.+.+.. .+- T Consensus 222 ~~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~-Td~s~is~~s--G~P 298 (527) T protein:vir:10 222 RPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTM-TDEDLIMVFG--GLG 298 (527) T ss_pred ccccccchhhhhhhcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhh-hHHHHHHHHh--CCc Confidence 001123344332 244543 45799999987665444444432 1122221110 000 Q ss_pred hhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccccee-ecCCCceEEeec--ccCChHHHHHHHHHHHHhhhcCC Q lcl|Aclame:pro 245 VNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLM-TTQGATVTPLVT--SVADPTATYNVNLQTAAAGVDIP 321 (449) Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~IP 321 (449) +. -.+.+.-....+ ...-++=+-+.++ ++++-++..+++ .+.++.+.++.+++.|+..+++| T Consensus 299 i~-----~~tg~~~vd~~G----------~~~~~~VgPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~P 363 (527) T protein:vir:10 299 FY-----ATDSAPPRDSRG----------NMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMTKAEEAMQQTKGIP 363 (527) T ss_pred ee-----eecccccccccC----------CcCccccCCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCC Confidence 00 001111000000 0001111222233 455667887776 56678999999999999999999 Q ss_pred ceeeeccCccccccchh-HHH-HHHHHHHHHHh-h-hHHHHHHHH-----HHH--HHhcCCC----CCCceEEeCCCCCC Q lcl|Aclame:pro 322 TRILIGNQQAERSSTED-QKY-FNARCQSRRVD-L-SFEIEDFCD-----KLI--ELKIIDA----VAKKAVIWDDLNEQ 386 (449) Q Consensus 322 ~t~L~Gqs~gg~~s~eD-~~n-yyd~I~~~Qe~-~-~~p~~~~l~-----~l~--~~~~~~~----~~~~~~~f~pL~~~ 386 (449) . +=||.--.+.+.+|. ++- .--.+++-|+. + ..-+++... ..+ +-+++.. +-...+.|.|.... T Consensus 364 a-vA~G~vD~s~~~SG~ALeL~L~PLlar~~rk~L~~~~vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~ 442 (527) T protein:vir:10 364 D-IAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPV 442 (527) T ss_pred e-eeeccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCC Confidence 7 566743333344552 322 23334444442 2 222332211 111 1122221 22568999999777 Q ss_pred CHHHHHHHHHHHHHHHHHHHHcCCccccCH-HHHHHHhcCCCCCCCCCC---------------------------CCCc Q lcl|Aclame:pro 387 TGTEKLTNAKTMGEINQTMLGSGDNPAFSR-EEIRTAAGYDNDDEEPLG---------------------------EEDG 438 (449) Q Consensus 387 sekE~Aei~~~~A~a~~~~~~~g~~~~~~~-~e~r~~~~~~~~~~~~~~---------------------------~~~~ 438 (449) +.++..+ ...+++++|.++.-++ ++|.++.+++.++.+... ..++ T Consensus 443 D~~avie-------~v~tL~~aGi~S~~tAv~~L~~~~g~eD~E~E~~~I~~era~~a~a~a~A~~~~~a~~~~~~g~~~ 515 (527) T protein:vir:10 443 NSEKRFN-------QLLQLWEAGLIPAKKLTEELSKIMGFELTEEDFKQATEDKKTQGIAQAEAADPFGAQMAAEQGIPD 515 (527) T ss_pred CHHHHHH-------HHHHHHHcCchhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCC Confidence 7665544 3445666664433222 233333332222111000 0000 Q ss_pred chhhcccccCC Q lcl|Aclame:pro 439 DEEDKATDSAA 449 (449) Q Consensus 439 ~ee~~~~~~~a 449 (449) ++.+......- T Consensus 516 ~~~d~~~~~~~ 526 (527) T protein:vir:10 516 EEDDQALNGQP 526 (527) T ss_pred CCcccccCCCC Confidence 01111111111 No 207 >protein:vir:6596 Length: 521 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891727;genbank:gi:33620636;genbank:GeneID:1725288 Probab=97.02 E-value=0.00021 Score=40.77 Aligned_cols=417 Identities=15% Similarity=0.112 Sum_probs=188.1 Q ss_pred CchhhHHHHHhhhHHHHHHHHHH-----HHHHHHhhcCcc-c----------ccchhccCCc---ccCCHHHHHHHHHc- Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARM-----GLMVPTMGLDNK-R----------HSAWCEYGFP---ELVTYENLYSLYRR- 60 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~g~~t~-r----------~~~~~~~~~~---~~~~~~~l~~~Y~~- 60 (449) |+..|++=-.-+.-......-.. .++.+...-|+. - ...+.+.++. ...+-.+|-..||+ T Consensus 1 ~~~~l~~~~~~~~~d~~~~~e~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~~~g~~~~~~~~e~~~~~~~eLI~~YR~m 80 (521) T protein:vir:65 1 MFSRLKMLARWADFDNDKYEEQIKDKAESIAAPKNNDGATEVEINDNSPASSWNSLTQQFYSTDQKISTTKQLVNTYRGL 80 (521) T ss_pred CccchhhhhhccCchhhHHHhhhccCCCcccCCCCCCCceeecccCCccccccccceeeeccccchhhhHHHHHHHHHHH Confidence 87777753332211110000000 011011000100 0 0011111111 23355678888876 Q ss_pred --CchhHHHHhhhHHHHhcC-----CcEEecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEe Q lcl|Aclame:pro 61 --GGIAHGAVEKLVGKCWQT-----NPEIIEGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHI 132 (449) Q Consensus 61 --~~l~r~iVd~pa~d~~r~-----~~~i~~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i 132 (449) ++.+..+|+.++.||+-. .+++.-...+-.......|-.+.+.+.. .++.++..+..|.--+.|--++-..+ T Consensus 81 a~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkii 160 (521) T protein:vir:65 81 MNNHEVENAVQNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLNTIQFDRRGQDMFRRWYVDSRIFFHKII 160 (521) T ss_pred hhccchhhHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceeEEEEEE Confidence 788999999999998632 1112110000011111122222222211 14455555655544444544444444 Q ss_pred cCCCcccccccccCceeeEEEeccccCChhhhhc--c-ccccccCCceeEEe-eeccc--------CCCccceEEcccee Q lcl|Aclame:pro 133 RDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDT--G-INSKTYGQPKLWKY-TERLP--------NGSSRRVDIHPDRV 200 (449) Q Consensus 133 ~d~~~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~~--D-p~s~~yg~P~~y~i-~~~~~--------~~~~~~~~IH~SRl 200 (449) + ++ +.+||..++-+++..+.....+. + +.-..++.-+.|++ ++... -+++.+++||.+= T Consensus 161 d--~~------pk~GI~ELr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~vkI~~dA- 231 (521) T protein:vir:65 161 G--KN------PKDGIVELRQLDPRNLEYVREIITEDTPEGKIYKATKEYFIYTVGNSSYCAGGQVFSPNSRVKIPRSA- 231 (521) T ss_pred c--CC------ccccceeeeeeCCcceeeeeeecccccCCcceecceeeeeeeecCCcceeccceeecCCcceeechhh- Confidence 2 22 23466666666655554322111 1 11111222222222 11000 1234567777663 Q ss_pred eeccC-C-----CCCcchhHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhhccChHHHH Q lcl|Aclame:pro 201 FILGD-Y-----SEDAIGFLEPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLYGVSIDELQ 268 (449) Q Consensus 201 i~~~~-~-----~~~G~s~l~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~ 268 (449) |+|.. + ..-=.|.|.++ +|.|+-++.+ -.+|+ +....++.+ ++-+|+... .++- T Consensus 232 I~y~hSGl~d~~~~~i~syLhkAiKp~NQLkm~EDA-----lVIYR-----itRAPeRRvFYIDvGnlPk~K---AeqY- 297 (521) T protein:vir:65 232 ITYAHSGLMDCDDKYIIGYLHRAVKPANQLKLLEDA-----MVVYR-----ITRAPERRVFFIDTGNMNNRK---AAQH- 297 (521) T ss_pred eeeeeccceeCCCCeeeecchhhhHhHHhhHHHHhh-----HHHHh-----hhccccceEEEEecCCCCchh---HHHH- Confidence 33321 1 11123566553 3444443332 12232 112222222 233333321 1222 Q ss_pred HHHHHHHHHHhc--------cc------cceee----------cCCCceEEeec--ccCChHHHHHHHHHHHHhhhcCCc Q lcl|Aclame:pro 269 DKFNEVAGEINR--------GN------DVLMT----------TQGATVTPLVT--SVADPTATYNVNLQTAAAGVDIPT 322 (449) Q Consensus 269 ~~~~~~~~~~~~--------~~------~~~l~----------~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~IP~ 322 (449) ++.++..+.+ |. .+.++ +.+.|++++.. +|+-++|+ ..|...+=-|.++|+ T Consensus 298 --l~~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV-~YF~kkLy~aLnVP~ 374 (521) T protein:vir:65 298 --MNSVAQSFKNRVVYDASTGKLKNQQANLSMTEDYWLQRRDGKAITDVTTLPGASGMSDIDDI-RYFNRKLYEALRVPL 374 (521) T ss_pred --HHHHHHhcCceeEeecccccccccccccchhhhhcccccCCCCccceeecccCCCcChHHHH-HHHHHHHHHHhCCCc Confidence 2222222211 00 00000 23457777754 56667775 688899999999999 Q ss_pred eeeeccCcccc---ccch---hHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcCCCC------CCceEEeCCCCCCCHH Q lcl|Aclame:pro 323 RILIGNQQAER---SSTE---DQKYFNARCQSRRVDLSFEIEDFCD-KLIELKIIDAV------AKKAVIWDDLNEQTGT 389 (449) Q Consensus 323 t~L~Gqs~gg~---~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~-~l~~~~~~~~~------~~~~~~f~pL~~~sek 389 (449) ++|-.++.+++ .++| |.-.|...|.++|..+..-..+.|. .|++-++..+. ..+.|+|.-=..-+|- T Consensus 375 sRl~~e~~~~~~~gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~El 454 (521) T protein:vir:65 375 SRSNLSDANMVIGGDGSEITRDELEFSKFIRTLQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYTEV 454 (521) T ss_pred eeccCCCCcceeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEeeecchHHHH Confidence 99955555443 3455 8889999999999877666666665 35666655432 4689999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHcCC-----------ccccCHHHHHHHh-cCCCCCCCCCC-CCCcchhhc Q lcl|Aclame:pro 390 EKLTNAKTMGEINQTMLGSGD-----------NPAFSREEIRTAA-GYDNDDEEPLG-EEDGDEEDK 443 (449) Q Consensus 390 E~Aei~~~~A~a~~~~~~~g~-----------~~~~~~~e~r~~~-~~~~~~~~~~~-~~~~~ee~~ 443 (449) ..+|+...+..+++.+-.-.. +--.|.+|+.+.- .++....++.- +.++++++= T Consensus 455 Ke~Eil~~R~~~l~~~dpyvGky~S~dyi~k~ILr~tDeei~~~~k~I~~E~~~~~~~~p~~~~~~f 521 (521) T protein:vir:65 455 KDAEILERRIGLIERITPYIGKYFSNQTVMRDILKYTDDQMDTEKKQIEEEANDPRFKQTPDEIEDF 521 (521) T ss_pred HHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHhhhCCCCCCCcccccCC Confidence 999999999888876532110 0012344433221 01111111111 111111111 No 208 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=96.99 E-value=0.00022 Score=40.65 Aligned_cols=412 Identities=9% Similarity=0.056 Sum_probs=165.3 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCC--cccCCHHHHHHHHHcCchhHHHHhhhHHHHhcC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGF--PELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~--~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~ 78 (449) |-++-+ ++.-+.-.++...... +..|-++ ..+.+.-- ...-..+-++.|.+ ..-...++.+--.-.+.. T Consensus 1 ~~~~~~--~~~gl~p~rl~~i~~~---~~~~~~~---~~~~~~~~~Lr~~~~~~ly~~m~~-D~hi~s~l~~Rk~av~~~ 71 (488) T protein:vir:95 1 MADITE--TQESLPPFRMGEVGSL---GLKVKNG---RIYEEPRQALRFPESIKTFQLMMR-DPAVAASVNIIKMFVRKV 71 (488) T ss_pred CCCccc--cCCCCCHHHHHHHHHH---hhccccc---hhhccchhhhcccchHHHHHHHhh-ChHHHHHHHHHHHHHhcC Confidence 655554 3332222222221110 1101111 01111000 00112334555655 666777888777777777 Q ss_pred CcEEecCCChhhHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHhccccccEEEEEEecCCCccccccc-c-cCc-eeeEEE Q lcl|Aclame:pro 79 NPEIIEGDDADDSEDETSWEKKSKQVFT-NR-LWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPAT-K-GRG-LQKVSV 153 (449) Q Consensus 79 ~~~i~~~~~~~~~~~~~~~e~~~~~l~~-~~-~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~-~-~~~-l~~i~v 153 (449) -|+|..+...++..+..+.-..++..+. .. -|..+...+-.+.+||+|++=+.-+.+.....++. . ..| +.--.+ T Consensus 72 ~w~v~p~~~~~~d~~~~~~a~~v~~~l~~~~~~~~~~i~~~lda~~~G~s~~Eivw~~~~~~~~~~~~~~~dg~~~~~~i 151 (488) T protein:vir:95 72 NWRFVPPKGKEQDPKMLERADFFNSLMDDMEHDWADFINSVMSFCTYGFCVNEKVYKKRQGKKGKYQSKFDDGLIGWAKL 151 (488) T ss_pred CceEecCCCCchhHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccceeeeeeeeccccccccccccccCCeeeeeee Confidence 7777644322222111111111222111 11 13333333445778999997665532221111111 1 112 212222 Q ss_pred eccccCChhhhhcc------------ccccccCCceeEEeeecccCCCccceEEccceeeecc----CCCCCcchhHHHH Q lcl|Aclame:pro 154 SWAGSLKVAEWDTG------------INSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILG----DYSEDAIGFLEPA 217 (449) Q Consensus 154 ~~~~~i~~~~~~~D------------p~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~----~~~~~G~s~l~~~ 217 (449) .++.+.+...+..| +....++.|..|... ...+..|.+.|.+.+. .+..+|.++++.| T Consensus 152 ~~Rpq~~~~~f~~d~d~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lP~~kfi~~~~~~~~g~p~g~gLlr~~ 225 (488) T protein:vir:95 152 PIRNQSTLDKWYFDEDFRRVTGVRQNLRNVSHIAGAINLGE------RPLTRKLPRAKFMLFKYDDEYGNPEGRSPLLNA 225 (488) T ss_pred eecCcccccceeeccCCCceeeccccccccccccccccccc------ccccccccccceEEEeecCCCCccchhhHHHHH Confidence 34444333222222 111112222222111 1234556666766553 3456799999999 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHH----hccc-cceeecCCCc Q lcl|Aclame:pro 218 YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEI----NRGN-DVLMTTQGAT 292 (449) Q Consensus 218 ~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~l~~~~ed 292 (449) |....--.....-++.-+-+........+.. ........++..+.+.+.+..+ ..+. ..+++-.+-+ T Consensus 226 ~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~p--------~~~~~~~~~~e~~~l~~a~~~i~~~~~~~~~ag~iiP~g~~ 297 (488) T protein:vir:95 226 YVPWKYKVQIEEYEAVGVSRDLVGMPKIGLP--------PDYLDENAEPEKKAFVQYCKTVVNDMIANDRAGLIWPRYID 297 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHhcccceeEeec--------cCCCCCcccHHHHHHHHHHHHHHHHhhccchhheeeccccc Confidence 9865432222222222111111111111110 0111111122222222222222 1111 1233322211 Q ss_pred ---------eEEeecccCC---hHHHHHHHHHHHHhhhcCCceeeecc------Ccccccc-ch-hHHHHHHHHHHHHHh Q lcl|Aclame:pro 293 ---------VTPLVTSVAD---PTATYNVNLQTAAAGVDIPTRILIGN------QQAERSS-TE-DQKYFNARCQSRRVD 352 (449) Q Consensus 293 ---------~~~~~~~lsg---l~d~~~~~~~~iaaas~IP~t~L~Gq------s~gg~~s-~e-D~~nyyd~I~~~Qe~ 352 (449) ++.++..=++ ...+++..-.+||-+. +|| ..||..+ ++ -.....+.+.+.... T Consensus 298 ~~~k~~~~e~~l~~~~~~~~~~~~~li~~~d~~Isk~i-------LGqtLT~~~~~~Gs~Al~~vh~ev~~~i~~aDa~~ 370 (488) T protein:vir:95 298 PDTKEDIFEFSLVSRQGAKAYDTGSIIDRYSKQIMMAF-------MSDVLAMGQSKYGSFSLADSKTSLLAMSVDILLKQ 370 (488) T ss_pred cccchhhhhhhccccccCCchhHHHHHHHHHHHHHHHH-------hccccccccCcchhhhHHHHHHHHHHHHHHHHHHH Confidence 2223332222 3456777777777543 444 1122222 22 345566666666555 Q ss_pred hhHHHHH-HHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccC--HHHHHHHhcCCCCC Q lcl|Aclame:pro 353 LSFEIED-FCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFS--REEIRTAAGYDNDD 429 (449) Q Consensus 353 ~~~p~~~-~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~--~~e~r~~~~~~~~~ 429 (449) +..-+.+ +|..|+...++....--.|+|...- ..++ ++.|+++++++++|...... .+.+|+..+++.+. T Consensus 371 i~~tln~~li~~l~~~Nfg~~~~~P~~~~~~~e------~~Dl-~~~ae~~~~L~~~G~~i~~~~~~~~i~e~~gip~~~ 443 (488) T protein:vir:95 371 IKNVINRDLVAQTYALNMWDDEEHVQITYDDIE------TPDL-EAIGSYIQKTVAVGALEVDKELSNKLREHIGLPPAD 443 (488) T ss_pred HHHHHHHHHHHHHHHhcCCCCCCccEEEecCcC------hhhH-HHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCC Confidence 5555543 5566777777654333356663322 1222 46688999999998332111 35689988887543 Q ss_pred C-CCCC-CCC---c---c-hhhcccccCC Q lcl|Aclame:pro 430 E-EPLG-EED---G---D-EEDKATDSAA 449 (449) Q Consensus 430 ~-~~~~-~~~---~---~-ee~~~~~~~a 449 (449) + ++.. ... . . ......+.+| T Consensus 444 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (488) T protein:vir:95 444 ESQPVSEKLSPNSQSRSGDGYKTAGEGTA 472 (488) T ss_pred CCccccccCCCCCCCCCCcccCCCcccCC Confidence 2 1110 000 0 0 0000000011 No 209 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=96.99 E-value=0.00022 Score=40.61 Aligned_cols=398 Identities=13% Similarity=0.055 Sum_probs=164.3 Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCc---------ccCCHHHHHHHHHcC----------ch---h Q lcl|Aclame:pro 7 LAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFP---------ELVTYENLYSLYRRG----------GI---A 64 (449) Q Consensus 7 ~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~---------~~~~~~~l~~~Y~~~----------~l---~ 64 (449) |+-+ +-. .+..++-..+.-++| |...|..+.++|..+ +- . T Consensus 1 ~~~~-----------~~~-------~~~~~~~~~g~~~~p~~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~~~~ 62 (527) T protein:vir:10 1 MGQD-----------KRQ-------YGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQ 62 (527) T ss_pred CCcc-----------ccc-------cCCCcCcCCccccCcccCCHHHHHHHHHHHHHHHHhcCchhheeeecCCcccccc Confidence 1111 000 111112222222333 233456788888774 11 1 Q ss_pred HHHHhhhHHHHhcCCcEEec-CCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEecCCCc----c Q lcl|Aclame:pro 65 HGAVEKLVGKCWQTNPEIIE-GDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIRDEKD----W 138 (449) Q Consensus 65 r~iVd~pa~d~~r~~~~i~~-~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~----~ 138 (449) |.+++.-..-.+=..-+|+. |.+......-...+..++.++.+ .+..++.++.+|+-+-|.+++.+.-+.++. + T Consensus 63 r~~~~ps~~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~ 142 (527) T protein:vir:10 63 RPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRL 142 (527) T ss_pred ceeeehhhHHhhCCcceeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCc Confidence 33333333333322223322 21211111112234444444444 677889999999999999988887654432 1 Q ss_pred c-ccccc--------c---CceeeEEEe--ccccCChhh-----------hhc-cccccc-cCCceeEEeee---cccC- Q lcl|Aclame:pro 139 N-LPATK--------G---RGLQKVSVS--WAGSLKVAE-----------WDT-GINSKT-YGQPKLWKYTE---RLPN- 187 (449) Q Consensus 139 ~-~Pl~~--------~---~~l~~i~v~--~~~~i~~~~-----------~~~-Dp~s~~-yg~P~~y~i~~---~~~~- 187 (449) + .+.|+ . ..+..++.. |+..-.+.. +.- |-..|- +|. .+|.... ..+. T Consensus 143 ~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~-~~yt~~~w~lg~w~d 221 (527) T protein:vir:10 143 SLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGA-IKYTEELYEPGKWDD 221 (527) T ss_pred eEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcc-eeeeeceeecccccc Confidence 1 12222 1 234444434 332222221 011 222222 222 2333210 0000 Q ss_pred ------------CCccceEEccce-------eeeccC----CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh Q lcl|Aclame:pro 188 ------------GSSRRVDIHPDR-------VFILGD----YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLN 244 (449) Q Consensus 188 ------------~~~~~~~IH~SR-------li~~~~----~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~ 244 (449) -...+..+|+.= +++|++ +..||.|-|+.+..-+..++++. +-.+.+.+.. .+- T Consensus 222 ~~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~-Td~s~is~~s--G~P 298 (527) T protein:vir:10 222 RPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTM-TDEDLIMVFG--GLG 298 (527) T ss_pred ccccccchhhhhhhcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhh-hHHHHHHHHh--CCc Confidence 001123344332 244543 45799999987665444444432 1122221110 000 Q ss_pred hhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccccee-ecCCCceEEeec--ccCChHHHHHHHHHHHHhhhcCC Q lcl|Aclame:pro 245 VNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLM-TTQGATVTPLVT--SVADPTATYNVNLQTAAAGVDIP 321 (449) Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~IP 321 (449) +. -.+.+.-....+ ...-++=+-+.++ ++++-++..+++ .+.++.+.++.+++.|+..+++| T Consensus 299 i~-----~~tg~~~vd~~G----------~~~~~~VgPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~P 363 (527) T protein:vir:10 299 FY-----ATDSAPPRDSRG----------NMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIP 363 (527) T ss_pred ee-----eecccccccccC----------CcCccccCCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCC Confidence 00 001111000000 0001111222233 455667887776 56678999999999999999999 Q ss_pred ceeeeccCccccccchh-HHH-HHHHHHHHHHh-h-hHHHHHHHH-----HHH--HHhcCCC----CCCceEEeCCCCCC Q lcl|Aclame:pro 322 TRILIGNQQAERSSTED-QKY-FNARCQSRRVD-L-SFEIEDFCD-----KLI--ELKIIDA----VAKKAVIWDDLNEQ 386 (449) Q Consensus 322 ~t~L~Gqs~gg~~s~eD-~~n-yyd~I~~~Qe~-~-~~p~~~~l~-----~l~--~~~~~~~----~~~~~~~f~pL~~~ 386 (449) . +=||.--.+.+.+|. ++- .--.+++-|+. + ..-+++... ..+ +-+++.. +-...+.|.|.... T Consensus 364 a-vA~G~vD~s~~~SG~ALeL~L~PLlar~~rk~L~~~~Vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~ 442 (527) T protein:vir:10 364 D-IAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPV 442 (527) T ss_pred e-eeeccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCC Confidence 7 566743333344552 322 23334444442 2 222332211 111 1122221 22568999999877 Q ss_pred CHHHHHHHHHHHHHHHHHHHHcCCccccCH-HHHHHHhcCCCCCCCCCC---------------------------CCCc Q lcl|Aclame:pro 387 TGTEKLTNAKTMGEINQTMLGSGDNPAFSR-EEIRTAAGYDNDDEEPLG---------------------------EEDG 438 (449) Q Consensus 387 sekE~Aei~~~~A~a~~~~~~~g~~~~~~~-~e~r~~~~~~~~~~~~~~---------------------------~~~~ 438 (449) +.++..+ ...+++++|.++.-++ ++|.++.+++.++.+... ..++ T Consensus 443 D~~avie-------~v~tL~~aGiiS~etAv~~L~~~~g~eD~E~E~~~I~~era~~a~a~a~a~~~~~a~~~~~~g~~~ 515 (527) T protein:vir:10 443 NNEKRFA-------QLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPD 515 (527) T ss_pred CHHHHHH-------HHHHHHHcCchhHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCC Confidence 7665544 3445666664433222 233333332222111000 0000 Q ss_pred chhhcccccCC Q lcl|Aclame:pro 439 DEEDKATDSAA 449 (449) Q Consensus 439 ~ee~~~~~~~a 449 (449) ++.+......- T Consensus 516 ~~~d~~~~~~~ 526 (527) T protein:vir:10 516 EEDDQALNGQP 526 (527) T ss_pred CCcccccCCCC Confidence 01111111111 No 210 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=96.97 E-value=0.00023 Score=40.51 Aligned_cols=412 Identities=13% Similarity=0.083 Sum_probs=176.9 Q ss_pred CchhhHHHHHhhh---------HHHHHHH-H-HHHHHHHHhhcCccccc-chhcc-C-CcccCCHHHHHHHHHc---Cch Q lcl|Aclame:pro 1 MTDKLTLAVNHAL---------NDARMAR-A-RMGLMVPTMGLDNKRHS-AWCEY-G-FPELVTYENLYSLYRR---GGI 63 (449) Q Consensus 1 ~~~~~~~~v~~~~---------~~~~~~~-~-~~~~~~~~~g~~t~r~~-~~~~~-~-~~~~~~~~~l~~~Y~~---~~l 63 (449) |.+=+.--.+..- ++.+.+. + .+|.....+|.++..-. .+++| + .+...+-.+|-.-||+ ++- T Consensus 3 ~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~d~~~~~~~~~~LI~~YR~ma~~pE 82 (516) T protein:vir:10 3 FLDLFKFWDRVDQNEYDERLKQGHESIATPKKDDGATEIEAREGESSYNALMQQFFGIDNNISGTKDLINTYRQLTNNPE 82 (516) T ss_pred chHhcccccchhhHHHHhhhcCCCCcccCCCCccCceeeecCcccccccceeeeeecccCccccHHHHHHHHHHhhhccc Confidence 1111110000000 0000000 0 01111111111111000 11111 1 1234455778888876 788 Q ss_pred hHHHHhhhHHHHhcC-----CcEEecCCChh-hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEecCCC Q lcl|Aclame:pro 64 AHGAVEKLVGKCWQT-----NPEIIEGDDAD-DSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIRDEK 136 (449) Q Consensus 64 ~r~iVd~pa~d~~r~-----~~~i~~~~~~~-~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~ 136 (449) +..+|+.++.||+-. .+++- -++.+ .......|-.+.+.+.. .++.++..+..|.--+.|--++-..+ | T Consensus 83 vd~Av~eIvneaiv~d~~~~pV~l~-l~~~e~s~sik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKii-d-- 158 (516) T protein:vir:10 83 VERAVANIVNEAVVYEKGHKVVSLD-LDDTEFSSSIKDKILEEFDEICRLLDASRKLDTLFRRWYIDSRIFFHKIM-P-- 158 (516) T ss_pred hhHHHHHhhcceeEecCCCceEEEE-ecccccchHHHHHHHHHHHHHHHHhccchhhhHHHHhhhhcceEEEEEEe-c-- Confidence 889999999998632 22221 11110 11111122222222211 13455555555433333432222223 3 Q ss_pred cccccccccCceeeEEEeccccCChhhhh-c-cc-cccc---------cCCc-eeEEeeecccCCCccceEEccce---- Q lcl|Aclame:pro 137 DWNLPATKGRGLQKVSVSWAGSLKVAEWD-T-GI-NSKT---------YGQP-KLWKYTERLPNGSSRRVDIHPDR---- 199 (449) Q Consensus 137 ~~~~Pl~~~~~l~~i~v~~~~~i~~~~~~-~-Dp-~s~~---------yg~P-~~y~i~~~~~~~~~~~~~IH~SR---- 199 (449) ++.+||..++-+++..+...... + |. ...- |... .+|.++.... +++.+++|+.+= T Consensus 159 ------~~k~GI~elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~-~~~~~ikI~~daI~y~ 231 (516) T protein:vir:10 159 ------NPKEGIVELRRLDPRHVEYYREIVTSDVGGTSVVKGYREFFVYTTGNEGYAYNGRLF-EPNTRIKIPRSAIVYA 231 (516) T ss_pred ------CcccceeeeeeeCCcceeeEEeeecccCcchhhhhceeeeeeeecCccceecccccc-CCCCceecchhheeee Confidence 22346666666665555432221 0 10 0000 1100 1222221111 233456666652 Q ss_pred ---eeeccCCCCCcchhHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhhccChHHHHHH Q lcl|Aclame:pro 200 ---VFILGDYSEDAIGFLEPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLYGVSIDELQDK 270 (449) Q Consensus 200 ---li~~~~~~~~G~s~l~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~ 270 (449) |..++++.. .|.|.++ +|.|+-++.+ -.+|+- ....++.+ ++-+|+... .++- T Consensus 232 hSGl~d~~~~~i--~syLhkAiKp~NQLkm~EDA-----lVIYRi-----tRAPeRRvFYIDVGnLPk~K---AeqY--- 293 (516) T protein:vir:10 232 HSGLQDCSDRGI--VGYLHNAVKPANQLKLLEDA-----LVIYRI-----TRAPERRVFYIDVGNMPNRK---ATEY--- 293 (516) T ss_pred ecCcccCCCCce--eceehhhhHhHHhhHHHHhh-----HHHHhh-----hccccceEEEEecCCCCchh---HHHH--- Confidence 222222222 3566553 3344433332 122321 11222221 233333321 1221 Q ss_pred HHHHHHHHhc------cccc-------e-e----------ecCCCceEEeec--ccCChHHHHHHHHHHHHhhhcCCcee Q lcl|Aclame:pro 271 FNEVAGEINR------GNDV-------L-M----------TTQGATVTPLVT--SVADPTATYNVNLQTAAAGVDIPTRI 324 (449) Q Consensus 271 ~~~~~~~~~~------~~~~-------~-l----------~~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~IP~t~ 324 (449) ++.++..+.+ .++- + + -+.+.|++++.. +|+-++|+ ..|...+=-|.++|+++ T Consensus 294 l~~iM~k~KNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV-~YF~kkLy~aLnVP~SR 372 (516) T protein:vir:10 294 VNGIMQSLKNRVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVTEVTSLPGAQTMGEMDDV-RWFNKKLYEALRIPLSR 372 (516) T ss_pred HHHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChHHHH-HHHHHHHHHHhCCCccc Confidence 1122211110 0000 0 0 023456777644 46667665 68889999999999999 Q ss_pred eeccCcccc---ccch---hHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHhcCCC------CCCceEEeCCCCCCCHHHH Q lcl|Aclame:pro 325 LIGNQQAER---SSTE---DQKYFNARCQSRRVDLSFEIEDFCDK-LIELKIIDA------VAKKAVIWDDLNEQTGTEK 391 (449) Q Consensus 325 L~Gqs~gg~---~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~~-l~~~~~~~~------~~~~~~~f~pL~~~sekE~ 391 (449) |=..+++.+ .++| |.-.|...|.++|..+..-..+.|.. |++-+...+ ..++.|+|.-=..-+|-.. T Consensus 373 l~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lF~~~L~~qLilKgIit~eeW~~i~~~I~~~f~~Dn~f~ElKe 452 (516) T protein:vir:10 373 MPRDDGGMVIGGQDMAITRDELDFRKFIVQLQHNFEEIFLDPLKTNLIYKKIILESEWEEQINNIKVNFHQDSYYTELKD 452 (516) T ss_pred ccCCCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhhcceEEeeecchHHHHHH Confidence 987665432 3455 88899999999998776656666653 555555433 2478999999999999999 Q ss_pred HHHHHHHHHHHHHHHHcCCccccCHHHHHHHhc-------------CCCCCCCCCCCCCcchhhccc Q lcl|Aclame:pro 392 LTNAKTMGEINQTMLGSGDNPAFSREEIRTAAG-------------YDNDDEEPLGEEDGDEEDKAT 445 (449) Q Consensus 392 Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~-------------~~~~~~~~~~~~~~~ee~~~~ 445 (449) +|+...+..+++.+-.-+ .--++.+=++...- ++....++.-..+++| .+. T Consensus 453 ~Eil~~Rl~~l~~~dpyv-Gky~s~~yi~k~ILr~tDeei~~~~k~I~~E~~~~~~~~p~~e--~~f 516 (516) T protein:vir:10 453 IETLRQRVDALSQIEPYV-GKYVSHDYVMKNILQMTDEQIAQEEKQIEKEANVKRFQNPENE--DDF 516 (516) T ss_pred HHHHHHHHHHHHHhhhhh-ccccchHHHHHHHhcCCHhHHHHHHHHHHHhhhCCCCCCCCcc--ccC Confidence 999999988887653211 01223333322210 1111111111111111 111 No 211 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=96.94 E-value=0.00025 Score=40.33 Aligned_cols=316 Identities=6% Similarity=-0.059 Sum_probs=143.4 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHH-----HhhcCccccc--ch-hc--cCCcccCCHHHHHHHHHcCchhHHHHhh Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVP-----TMGLDNKRHS--AW-CE--YGFPELVTYENLYSLYRRGGIAHGAVEK 70 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~g~~t~r~~--~~-~~--~~~~~~~~~~~l~~~Y~~~~l~r~iVd~ 70 (449) |++.+......... ++ .-.|..+ ++....--+- .| +. -+|...+++..|..+++.|+....+|.. T Consensus 1 ~~~~~~~~~~~~~~-~~----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~epp~~~~~La~l~~~n~~h~~~i~~ 75 (348) T protein:vir:26 1 MTEQLIHSHTTDGT-ES----KSVYSFDPNPEPVDTNSWMTRYCELFYNDFDDYWEPPISLKGLAEIANANGYHGSLLKA 75 (348) T ss_pred CCccccchhhcccc-CC----ceEEEecCCCeeecCcchHHHHHHHHhcCCCccccCCCCHHHHHHHHhhhhhhhhhHhh Confidence 99887733332221 11 0111111 1000000000 11 11 2345678899999999999888888876 Q ss_pred hHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccCcee Q lcl|Aclame:pro 71 LVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGRGLQ 149 (449) Q Consensus 71 pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~~l~ 149 (449) -.....+ +++ +... .+.. .+++-+.+. .++|-|++.+.-+. |+ +. T Consensus 76 k~N~l~~-~~~------Pn~~--~t~~----------~f~~~~~d~----ll~Gnay~~~~rn~~G~-----------~~ 121 (348) T protein:vir:26 76 RANYVAG-RFM------NGGG--LPMY----------KMNSACWDY----FGLGMSAFVKIRSYLKN-----------VI 121 (348) T ss_pred hhhHHhh-ccc------CCCC--CCHH----------HHHHHHHHH----HhcCCeEEEEEEcCCCc-----------EE Confidence 6655433 221 1000 0000 111112222 35788887775422 22 22 Q ss_pred eEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHH Q lcl|Aclame:pro 150 KVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLE 225 (449) Q Consensus 150 ~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~ 225 (449) .|.++....+.+. .| ..+|++.. .+..+.+.+..|+||... ...|.|-+..+...+..-. T Consensus 122 ~L~~l~~~~v~~~---~d--------~~~~~~~~-----~g~~~~f~~~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~ 185 (348) T protein:vir:26 122 ALEPLPMVHMRKR---KN--------GDFVQLLR-----NNEQKVFKAKDVIFIPQYDPQQQIYGLPDYLGSIQSSLLNR 185 (348) T ss_pred EEEEecCceeEee---ec--------CcEEEEEe-----cCeEEEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHH Confidence 3344333322221 12 12344431 223467888999998642 3468888877776554322 Q ss_pred HHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc---ceeec----CCCceEEeec Q lcl|Aclame:pro 226 KVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND---VLMTT----QGATVTPLVT 298 (449) Q Consensus 226 ~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~----~~ed~~~~~~ 298 (449) .+ ......+|++....=.+- .+. .....++..+++.+.+... ++.+ .+++. +++.++.... T Consensus 186 ~a-~~~~~~~f~NGa~pg~Il-----~~~-----~~~ls~e~~~~lk~~~~~~-~G~~n~~~~~vl~~~g~~~Gi~~~pi 253 (348) T protein:vir:26 186 DA-TLFRRRYYLNGAHMGFIF-----YAT-----DPNLSEADEKALKEKIASS-KGIGNFRSMFVNIPNGKEKGIQLIPV 253 (348) T ss_pred HH-HHHHHHHHhccCCCceEE-----Eec-----CCCCCHHHHHHHHHHHHHh-cCcccccceeEEcCCCCccceeEEEc Confidence 21 122223334332210000 000 1123455566666655543 2222 23332 1233444444 Q ss_pred ccCC----hHHHHHHHHHHHHhhhcCCceeeeccCc---cccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 299 SVAD----PTATYNVNLQTAAAGVDIPTRILIGNQQ---AERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKII 370 (449) Q Consensus 299 ~lsg----l~d~~~~~~~~iaaas~IP~t~L~Gqs~---gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~ 370 (449) +.+. +-++.....+.||++.+||- .|.|..+ ++.++-+ -.+.|+.. .+.|+.+.+..-+-..++ T Consensus 254 s~~~~d~qf~e~k~~t~~dIa~af~VPp-~llGi~~~~~~~~sn~e~~~~~f~~~-------~l~P~~~~ie~~ln~~l~ 325 (348) T protein:vir:26 254 GDIATKDEFERIKNITAQDIFVGHRFPA-GMGGMLPQQGANVPDPLKVSQVYDFY-------EVIPVCKRFMDAVNNDPE 325 (348) T ss_pred cCChhHHHHHHHHHhhHHHHHHHhCCCH-HHccccCCCCCccccHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhC Confidence 4433 34444566778999999997 5667533 3333333 34556532 345655555442222222 Q ss_pred CCCCC--ceEEeCCCCCCCHHHHHHH Q lcl|Aclame:pro 371 DAVAK--KAVIWDDLNEQTGTEKLTN 394 (449) Q Consensus 371 ~~~~~--~~~~f~pL~~~sekE~Aei 394 (449) .+.+ |.|+|+|...-+++ +-+ T Consensus 326 -~~~~~~~~fdl~~~~e~~~~--~a~ 348 (348) T protein:vir:26 326 -IPDNLKLKFNLNPGVESANG--SAV 348 (348) T ss_pred -CCCccEEEEecCcccccchh--hcC Confidence 2344 55556664333322 111 No 212 >protein:vir:103177 Length: 533 # NCBI annotation: gp131 # Family: family:all:1036 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717798;genbank:gi:113200635;genbank:GeneID:4239186 Probab=96.56 E-value=0.00051 Score=38.61 Aligned_cols=418 Identities=14% Similarity=0.102 Sum_probs=180.9 Q ss_pred CchhhHHHHHhhhHHHHHH----HHH-HHHHHHHhhcCcccccchhccCC-cccCCHHHHHHHHHc---CchhHHHHhhh Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMA----RAR-MGLMVPTMGLDNKRHSAWCEYGF-PELVTYENLYSLYRR---GGIAHGAVEKL 71 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~----~~~-~~~~~~~~g~~t~r~~~~~~~~~-~~~~~~~~l~~~Y~~---~~l~r~iVd~p 71 (449) |.+=+-...+..-.+.... -+. ++.....+|+.++ .-.+. +...+-.+|-.-||+ ++.+..+|+.+ T Consensus 1 m~~lfg~~i~~~~~~~~~~s~~~~~~~dg~~~i~~~~~~~-----~~~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eI 75 (533) T protein:vir:10 1 MSQLFGFSLERAKKAPKGPSFVQKDNLDGSQPVSGGGYYG-----YTVDFDGQVRNEYQLISRYREMVLQPECDSAVDDI 75 (533) T ss_pred CccccccccccccccccCCCCCCCCcccccceeecccccc-----eeeecccccchHHHHHHHHHHHhhccchhhHHHHh Confidence 4433322222111100000 000 1111111111100 00011 234456788888886 78899999999 Q ss_pred HHHHhcC-----CcEEecCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEecCCCccccccccc Q lcl|Aclame:pro 72 VGKCWQT-----NPEIIEGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKG 145 (449) Q Consensus 72 a~d~~r~-----~~~i~~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~ 145 (449) +.||+-. .+.+.-....-.......|-.+.+.+.. .++.++..+..|.--+.|--+.-..| |.+. +. T Consensus 76 Vneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fHkii-d~~~------pk 148 (533) T protein:vir:10 76 VNETICGNFDDVPVSVELSNLKVSDKIKKLIREEFGEILRLLDFENRSYEIFRRWYVDGRLFYHKVI-DPDN------PQ 148 (533) T ss_pred hcceeeecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEe-cCCC------cc Confidence 9998532 1111111100111111122222222211 13444544544432233322222223 2222 22 Q ss_pred CceeeEEEeccccCChhhhh----ccc------cccccCCce-eEEeeeccc-CCCccceEEccceeeeccC------CC Q lcl|Aclame:pro 146 RGLQKVSVSWAGSLKVAEWD----TGI------NSKTYGQPK-LWKYTERLP-NGSSRRVDIHPDRVFILGD------YS 207 (449) Q Consensus 146 ~~l~~i~v~~~~~i~~~~~~----~Dp------~s~~yg~P~-~y~i~~~~~-~~~~~~~~IH~SRli~~~~------~~ 207 (449) +||..++-+++..+.+.... .|. ....|+.-. +|..++... .++.++++||.+ .|+|.. .. T Consensus 149 ~GI~ELr~lDPr~i~~vr~i~~~~~~~~~~~~~~~~v~~~~~eyf~Ynp~g~~~~~~~~vkI~~d-AI~y~hSGl~d~~~ 227 (533) T protein:vir:10 149 GGLIELRYIDPRKIRKINETEQKRPEQLRGLPLNQQLSPKSAEYFLYDPKGLKNSTTQGLKIAPD-SICYVHSGIMDLNK 227 (533) T ss_pred ccceeeeeccccceeeeeeeeccCCCccceeecchhhhccceeeeeeccccccccCCCceecchh-heeeeeccceeCCC Confidence 46666555555555432111 111 112233332 333332211 123456777776 334432 11 Q ss_pred CCcchhHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhhccChHHHHHHHHHHHHHHhc- Q lcl|Aclame:pro 208 EDAIGFLEPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLYGVSIDELQDKFNEVAGEINR- 280 (449) Q Consensus 208 ~~G~s~l~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 280 (449) .-=.|.|.++ +|.|+-++.+ -.+|+- ....++.+ ++-+|+... .++- ++.++..+.+ T Consensus 228 ~~i~syLhkAiKp~NQLkm~EDA-----lVIYRi-----tRAPeRRvFYIDVGnLPk~K---AeqY---lr~iM~k~KNk 291 (533) T protein:vir:10 228 NMTLSHLHKAIKAVNQLRMIEDS-----LVIYRL-----SRAPERRIFYIDVGNLPKNK---AEQY---LREVMGRYRNK 291 (533) T ss_pred CceeccchHhHHHHHhhHHHHhh-----HHHHhh-----hccccceEEEEecCCCCchh---HHHH---HHHHHHhccce Confidence 1123566554 3344433332 122321 12222221 233333221 1221 1222221110 Q ss_pred -----ccc--------c-ee---------ecCCCceEEeec--ccCChHHHHHHHHHHHHhhhcCCceeeeccCcccc-- Q lcl|Aclame:pro 281 -----GND--------V-LM---------TTQGATVTPLVT--SVADPTATYNVNLQTAAAGVDIPTRILIGNQQAER-- 333 (449) Q Consensus 281 -----~~~--------~-~l---------~~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~-- 333 (449) .++ + ++ -+.+.+++++.. +|+-++|+ ..|...+=-|.++|+++|= +..|.+ T Consensus 292 lVYDa~TGev~ddrk~msMlEDyWLPRReGgrgTEItTLpGgqnLgem~DV-~YF~kKLY~aLnVP~SRl~-~e~~f~~G 369 (533) T protein:vir:10 292 LVYDANTGEIKDDKKFMSMLEDFWLPRREGGRGTEITTLPGGQNLGELEDV-KYFQKKLYKSLNVPGSRLE-TETTFNVG 369 (533) T ss_pred EEEeccCceecccchhhhhHhhhcccccCCCCccceeeccccCCcChHHHH-HHHHHHHHHHhCCCccccC-CCCccccc Confidence 000 0 00 023456777644 46667665 6888999999999999983 333322 Q ss_pred ccch---hHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcCCC------CCCceEEeCCCCCCCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 334 SSTE---DQKYFNARCQSRRVDLSFEIEDFCD-KLIELKIIDA------VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQ 403 (449) Q Consensus 334 ~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~-~l~~~~~~~~------~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~ 403 (449) .|+| |.-.|...|.++|..+..-..+.|. .|++-+...+ ..++.|+|.-=..-+|-..+|+...+..+++ T Consensus 370 r~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~ 449 (533) T protein:vir:10 370 RAAEITRDEVKFQKFVARLRKRFSELFTDLLKTQLVLKGVISIEEWDQMKEHIQYDYIADNYFAELKEIEIRNERMNQVA 449 (533) T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHH Confidence 2345 8889999999999877666666665 3555555443 2478999999889999999999999888877 Q ss_pred HHHHcCC-----------ccccCHHHHHHHh----------cCCCCCCCC---CCCCCcchhhcccccCC Q lcl|Aclame:pro 404 TMLGSGD-----------NPAFSREEIRTAA----------GYDNDDEEP---LGEEDGDEEDKATDSAA 449 (449) Q Consensus 404 ~~~~~g~-----------~~~~~~~e~r~~~----------~~~~~~~~~---~~~~~~~ee~~~~~~~a 449 (449) .+-.-.. +--.|.+|+.+.- -+..+.++- ....+.+..+..++.+| T Consensus 450 ~~dpyvGky~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 519 (533) T protein:vir:10 450 TMDPFVGKYFSVEYMRRQVLKQTDVEMKEIDKQIESEMESGIIADPAAEMDPAMAAGDPDAGGAPAEEVA 519 (533) T ss_pred HhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCCCcchhhHHhcCCCCCcCCcccccCC Confidence 6521110 0113444443221 111111110 00001111112222222 No 213 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=96.46 E-value=0.0006 Score=38.25 Aligned_cols=315 Identities=11% Similarity=0.006 Sum_probs=141.0 Q ss_pred CchhhHHHHHhhhHHHHHHHH--HHHHHHH-----HhhcCcccccch---hccCCcccCCHHHHHHHHHcCchhHHHHhh Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARA--RMGLMVP-----TMGLDNKRHSAW---CEYGFPELVTYENLYSLYRRGGIAHGAVEK 70 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-----~~g~~t~r~~~~---~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~ 70 (449) |+.|.+- +.+.++...... +...... ++...+-.+... ...+|...+++..|..+++.|.....+|.. T Consensus 1 m~~~~~~--~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~~ 78 (344) T protein:vir:60 1 MSKKKGK--TLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYV 78 (344) T ss_pred CCcccCC--CCCchHHhhcCCcCcEEEEEcCCceeecCCcchhHHHHhhhcCccccCCCCHHHHHHHHHhhhhhccchhh Confidence 9999872 222222211111 1111111 111111122221 122344577888888887777766666655 Q ss_pred hHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCcee Q lcl|Aclame:pro 71 LVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRGLQ 149 (449) Q Consensus 71 pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~l~ 149 (449) -.....+ +++ -..... ..++++ + +.+. .++|-|++.+.-+ .|+ +. T Consensus 79 k~n~l~~-~~~--Pn~~~t----~~~f~~----~--------~~d~----ll~Gnay~~i~rn~~G~-----------~~ 124 (344) T protein:vir:60 79 KRNILAS-TFI--PHPWLS----QQDFSR----F--------VLDF----LVFGNAFLEKRYSTTGK-----------VI 124 (344) T ss_pred hhhHHHh-hcc--CCCCCC----HHHHHH----H--------HHHH----HhcCCeEEEEEECCCCc-----------EE Confidence 4443322 221 000000 001111 1 1111 3578888776542 122 23 Q ss_pred eEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccC----CCCCcchhHHHHHHHHHHHH Q lcl|Aclame:pro 150 KVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD----YSEDAIGFLEPAYNAFVSLE 225 (449) Q Consensus 150 ~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~----~~~~G~s~l~~~~~~l~~~~ 225 (449) .|.++....+.+. .|. + .+|+|. +.+..+.+.+.-|||+.. ....|.|-+..+...+..-. T Consensus 125 ~L~~l~~~~vr~~---~~~---~----~~~~v~-----~~~~~~~~~~~eIiHir~~~~~~~~yGlsp~~~a~~si~l~~ 189 (344) T protein:vir:60 125 RLETSPAKYTRRG---VEE---D----VYWWVP-----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNE 189 (344) T ss_pred EEEEcCcceEEEe---ecC---C----eEEEEc-----cCCeEEEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHH Confidence 3444333222221 111 1 245553 122345677777888864 33569988887776654322 Q ss_pred HHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHh---ccccceeec---CCCceEEeecc Q lcl|Aclame:pro 226 KVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEIN---RGNDVLMTT---QGATVTPLVTS 299 (449) Q Consensus 226 ~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~---~~ed~~~~~~~ 299 (449) .+ .....-+|+|....=.+- .+. .....++..+++.+.+.... .+.++++.. +++.++....+ T Consensus 190 ~a-~~~~~~~f~NG~~pg~il-----~~~-----~~~ls~e~~~~ik~~~~~~~g~~~~r~~~l~~p~g~~~g~~~~pis 258 (344) T protein:vir:60 190 SA-TLFRRKYYENGAHAGYIM-----YVT-----DAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLS 258 (344) T ss_pred HH-HHHHHHHHhccCCCceEE-----Eec-----CcCCCHHHHHHHHHHHHHhcCCCCCcceEEecCCCCccceeEEEcC Confidence 22 222333444432211110 000 11234455555655554432 112223322 12334444444 Q ss_pred cCC----hHHHHHHHHHHHHhhhcCCceeeeccCc---cccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 300 VAD----PTATYNVNLQTAAAGVDIPTRILIGNQQ---AERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIID 371 (449) Q Consensus 300 lsg----l~d~~~~~~~~iaaas~IP~t~L~Gqs~---gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~ 371 (449) .+. +-++-....+.||++.+||-. |+|..+ ++.+.-+ -.+.|+.. .+.|+.+.+..|..+- | T Consensus 259 ~~~~d~qf~e~k~~~~~eIa~af~VPp~-llGi~~~~t~~~~n~e~~~~~f~~~-------~L~Pl~~~~e~ln~~l-g- 328 (344) T protein:vir:60 259 EVATKDDFFNIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVRN-------ELIPLQDRIREINGWL-G- 328 (344) T ss_pred CChhHHHHHHHHHhhHHHHHHHhCCCHH-HhcccCCCCCccccHHHHHHHHHHH-------HHHHHHHHHHHHHHhc-C- Confidence 433 445566788899999999985 667433 3344434 34455432 3456665555443322 2 Q ss_pred CCCCceEEeCCCCCCCH Q lcl|Aclame:pro 372 AVAKKAVIWDDLNEQTG 388 (449) Q Consensus 372 ~~~~~~~~f~pL~~~se 388 (449) .+.|.|.+..|-.-+. T Consensus 329 -~~~i~F~~~~l~~~d~ 344 (344) T protein:vir:60 329 -QEVIRFKNYSLDTDNG 344 (344) T ss_pred -CcccccCccccCCCCC Confidence 1345666655555544 No 214 >protein:vir:7430 Length: 563 # NCBI annotation: gp7 # Family: family:all:6920 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818545;genbank:gi:29566982;genbank:GeneID:1260216 Probab=96.32 E-value=0.00075 Score=37.73 Aligned_cols=395 Identities=11% Similarity=0.061 Sum_probs=164.3 Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhcCcccc-cc-hhccCC-----cccCCHHHHHHHHHcC------------------ Q lcl|Aclame:pro 7 LAVNHALNDARMARARMGLMVPTMGLDNKRH-SA-WCEYGF-----PELVTYENLYSLYRRG------------------ 61 (449) Q Consensus 7 ~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~-~~-~~~~~~-----~~~~~~~~l~~~Y~~~------------------ 61 (449) |+-+|+. .+..++ .. ....+. .|.-.|..|.++|..+ T Consensus 1 m~~~~~q------------------~~p~~~~fp~~~a~wV~~~D~~RlaaY~ly~d~y~n~~~el~~il~G~dr~~~~~ 62 (563) T protein:vir:74 1 MPYNHKQ------------------YDPAKPFLRGGDDNIVDENDKNRVRAYDLYENIYLNSAETLKLVLRGDDSVPILM 62 (563) T ss_pred CCccccc------------------cCCCcccccccccccCCHHHHHHHHHHHHHHHhhcCchhhhhhhcCCCceeeecc Confidence 2222111 000000 00 000000 0222345556666442 Q ss_pred chhHHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccEEEEEEecCCCc--- Q lcl|Aclame:pro 62 GIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHIRDEKD--- 137 (449) Q Consensus 62 ~l~r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~-~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~--- 137 (449) +-++++|++.. --+-.+.+++-.....++......+..++.++.. ++..++..+.+|+-+-|.+++.+.-+..+. T Consensus 63 ps~r~~V~~~~-~~Lg~~~~~~Ve~~~~de~~~~avq~~Lr~~~~~e~l~~~~~~~~r~a~vlGDgvf~l~wDp~K~~g~ 141 (563) T protein:vir:74 63 PSGRKIVEAVH-RFLGVGFDYLVEPDMGDEGIRQSLNAYFRTTFKREAIKAKFTSNKRWGLIRGDAHFYIHADPNKKAGE 141 (563) T ss_pred chHHHHHHHHH-HhcCCCcEEecCccccCcchHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccccccCC Confidence 23789999965 4556677764322221222223466667766665 678899999999999998888776532221 Q ss_pred -cc-cccccc-----------CceeeEEEe--ccccCChh-----------hhhccccccccCCce-----eEEe----- Q lcl|Aclame:pro 138 -WN-LPATKG-----------RGLQKVSVS--WAGSLKVA-----------EWDTGINSKTYGQPK-----LWKY----- 181 (449) Q Consensus 138 -~~-~Pl~~~-----------~~l~~i~v~--~~~~i~~~-----------~~~~Dp~s~~yg~P~-----~y~i----- 181 (449) ++ .++|+. .|+.-++|. |+..-.+. ++|..| -|.-.. .|.. T Consensus 142 R~rv~~vDP~~~fp~~dpd~v~g~~~v~v~~~~~~pdd~~~~~~r~~~~~~~lndeg---~~~~~~~~dae~w~lg~wd~ 218 (563) T protein:vir:74 142 RISVDEVDPRQIFLIEDGSTVVGFHMVDIVQDFRSPDDPSKKLARRRTFRRVRNDEG---MFTGRISSELTHWTLGNWDD 218 (563) T ss_pred CceEeecCCceeeeccCCCCcccceeeecccCCCCCcchhccceeeeeeeeeeCCCC---Cccceeeeccchhccccccc Confidence 11 112211 122212211 11110110 011111 111111 1211 Q ss_pred eeccc-CC-CccceEEccce---------------eeeccC----CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHh Q lcl|Aclame:pro 182 TERLP-NG-SSRRVDIHPDR---------------VFILGD----YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAA 240 (449) Q Consensus 182 ~~~~~-~~-~~~~~~IH~SR---------------li~~~~----~~~~G~s~l~~~~~~l~~~~~~~~~~a~l~~~~~~ 240 (449) .+-.. .. ....-.+|-+| ++||++ +..||.|-|..+..-+..+.++. +..+.+.. . T Consensus 219 r~~~~~~~~~~~~~~~~~~~d~e~~~LP~pi~~iPiv~~~tip~~~s~WG~S~La~ll~~~~eLn~~~-Td~s~i~~--~ 295 (563) T protein:vir:74 219 RGAISDEQARRKEQVRSAQHDEEEEELPEPISQLPLYRWRNKPPQNSSWGTSQLEGMETLAYALNQSL-TDEDATIV--F 295 (563) T ss_pred cCccchhhhcccchhhhhhhhchhhhccccccCccEEEcCCCCCcccccchhhHHHHHHHHHHHhhhh-hHHHHHHH--h Confidence 00000 00 00000112111 234443 45799999887665444433321 11111111 0 Q ss_pred hhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccccceee-cCC---CceEEeec--ccCChHHHHHHHHH-H Q lcl|Aclame:pro 241 RQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMT-TQG---ATVTPLVT--SVADPTATYNVNLQ-T 313 (449) Q Consensus 241 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---ed~~~~~~--~lsgl~d~~~~~~~-~ 313 (449) +.+-+ -.+.+.. ..+. .......++=+-+.++- .++ .-++.++. +|+++..-++.+.. . T Consensus 296 tG~pi--------~vl~~~~--p~d~----~~g~~~~w~vgpG~i~El~~~~~~g~l~~v~g~~~l~~~q~Hm~~l~era 361 (563) T protein:vir:74 296 QGLGM--------YVTNASA--PVDP----NTGELTDWNIGPMQIVEIAGNRNDNYFERVSGVQDVSPFQDHMKWIDEKG 361 (563) T ss_pred cCCCe--------EEecccc--cccc----ccccccccccCCceeEeccCCccccceeeecchhhhHHHHHHHHHHHHHH Confidence 11100 0111100 0000 00011123333333322 222 22666655 45677777887777 6 Q ss_pred HHhhhcCCceeeecc-----Cccccccc---h--hH------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC----- Q lcl|Aclame:pro 314 AAAGVDIPTRILIGN-----QQAERSST---E--DQ------KYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA----- 372 (449) Q Consensus 314 iaaas~IP~t~L~Gq-----s~gg~~s~---e--D~------~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~----- 372 (449) ++-.+++|. +=||. .+.|-+=. + +- ..++......+..+.+.+++++.+|.+.+-+.. T Consensus 362 l~~~s~tPa-vA~G~vD~~~~~SGiALeL~L~PL~a~~~ek~l~l~~~mr~~r~~~~~~lL~~~erl~~~g~~~~~~g~~ 440 (563) T protein:vir:74 362 IAEGSGTPE-VAIGRVDVTSAESGISLELQLKPLLAANEEKELEMIVVMDQFLHDWMTMWLPAYESDFQEQDGSRPFASA 440 (563) T ss_pred HHhhccCcc-eeecccccccccchhhhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccccccc Confidence 677889997 55673 22222200 1 22 224555555566666777777777777654331 Q ss_pred --CC--CceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCH-HHHHHHhcCCCCCCCCC--CCCCcchhh--- Q lcl|Aclame:pro 373 --VA--KKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSR-EEIRTAAGYDNDDEEPL--GEEDGDEED--- 442 (449) Q Consensus 373 --~~--~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~-~e~r~~~~~~~~~~~~~--~~~~~~ee~--- 442 (449) |. .+++.|.|....+..+.- +-...++++|.++.-++ ++|+++ +++-++-+.. ..+..+-.+ T Consensus 441 ~~~~~~~v~ivf~p~~P~d~~~vv-------~~~~tl~~aGiiSretAv~~L~~~-g~~~pdae~e~~~ie~~~i~~~~~ 512 (563) T protein:vir:74 441 DLLNECSVVCIFADPMPVNKTQVT-------QDTLLLQQAHLILRKMAVAKLRSI-GWEYPEVDDQGNALTDDDIADMLL 512 (563) T ss_pred ccCCceEEEEEeCCCCCccHHHHH-------HHHHHHHHcCchhHHHHHHHHHhC-CCCCCcHHHHHhhcCHHHHHHHHH Confidence 22 256789999887755432 33446677774433322 233333 4333321111 111111011 Q ss_pred cccccCC Q lcl|Aclame:pro 443 KATDSAA 449 (449) Q Consensus 443 ~~~~~~a 449 (449) +.++..| T Consensus 513 a~a~ad~ 519 (563) T protein:vir:74 513 AEAEADA 519 (563) T ss_pred HHhhccC Confidence 1111111 No 215 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=96.10 E-value=0.001 Score=37.00 Aligned_cols=319 Identities=8% Similarity=-0.030 Sum_probs=139.3 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHH--HHhhcCcccccch---hccCCcccCCHHHHHHHHHcCchhHHHHhhhHHHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMV--PTMGLDNKRHSAW---CEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKC 75 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~g~~t~r~~~~---~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~ 75 (449) |.-+.... ++....++..+ .-.|.- +.....+.--..| ..-+|...+++.-|..+++.|+....++..-.... T Consensus 1 ~~~~~~~~-~~~~~~~~~~~-~~~f~~~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~l~~~~~~h~~~i~~k~n~l 78 (345) T protein:vir:37 1 MKTNVKTD-NKKGIVIAPIN-DRTFSLNEISASPALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHSRANMV 78 (345) T ss_pred CCCCcccc-chhhcccCcce-eEEeecCCcccccchhhhhhhhcCCccccCCCCCHHHHHHHhhcccccccceeeechHH Confidence 66555422 22111111000 011111 1111111100111 11145567888888888888888777775443322 Q ss_pred hcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEec Q lcl|Aclame:pro 76 WQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSW 155 (449) Q Consensus 76 ~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~ 155 (449) .+ +++ +... .+.. .+++-+.+. .++|.|++.+.-+. .. .+..|.++. T Consensus 79 ~~-~~~------Pn~~--lt~~----------~f~~~~~d~----ll~Gnay~~~~rn~-~G---------~~~~L~pl~ 125 (345) T protein:vir:37 79 SS-LYE------GGKA--LSRM----------DMRALCLNL----IQFGDVGLLKVRNG-FG---------QVVRLVPLS 125 (345) T ss_pred Hh-hcc------CCCC--CCHH----------HHHHHHHHH----HhcCCeEEEEEEcC-CC---------cEEEEEEEc Confidence 22 221 1000 0000 122222222 36788887775432 11 123333433 Q ss_pred cccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccC----CCCCcchhHHHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 156 AGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD----YSEDAIGFLEPAYNAFVSLEKVEGGS 231 (449) Q Consensus 156 ~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~----~~~~G~s~l~~~~~~l~~~~~~~~~~ 231 (449) ...+.+ ..|. ..|+....|.+ ...+..+.+.+.-|||+.+ ....|.|-+..+...+..-..+.. . T Consensus 126 ~~~vr~---~~d~--~~~~~~~~~~~-----~~~g~~~~~~~~dVihir~~~~~~~~~Gls~~~~a~~si~l~~~a~~-~ 194 (345) T protein:vir:37 126 SLYLRV---RKDG--GYSYLMKKSLY-----DTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATV-F 194 (345) T ss_pred CceeEE---EEeC--CeeEEEEEeEe-----cCCceEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHH-H Confidence 322221 1221 22333333332 1223345677777888754 234688888877766543222221 1 Q ss_pred HHHHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcc---ccceeec---CCCceEEeecccCC-- Q lcl|Aclame:pro 232 GESFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRG---NDVLMTT---QGATVTPLVTSVAD-- 302 (449) Q Consensus 232 a~l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~---~~ed~~~~~~~lsg-- 302 (449) ...+|+|.... ..+. +. .....++..+++.+.+...... -++++.. +++.++....+.+. T Consensus 195 ~~~~f~NG~~p~~Il~------~~-----d~~l~~e~~~~lk~~~~~~~g~~n~~~~~i~~p~g~~~G~~~~pls~~~~d 263 (345) T protein:vir:37 195 RRRYFSNGAHMGFILY------ST-----DPDLTEEMEEEIARKISESKGVGNFRSMFVNIANGHPDGLKVIPIGDTGTK 263 (345) T ss_pred HHHHHhccCCcceEEE------ec-----CCCCCHHHHHHHHHHHHHhcCcccccceEEEcCCCcccceEEEEccCChhH Confidence 22233332211 1111 00 1123345555565555543211 1223332 12334443333332 Q ss_pred --hHHHHHHHHHHHHhhhcCCceeeeccCc---cccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCc Q lcl|Aclame:pro 303 --PTATYNVNLQTAAAGVDIPTRILIGNQQ---AERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKK 376 (449) Q Consensus 303 --l~d~~~~~~~~iaaas~IP~t~L~Gqs~---gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~ 376 (449) +-++.....+.||++.+||-. |+|..+ ++.+.-| -.+.|+. +.+.|+.+.+...+-. +...+.+. T Consensus 264 ~qf~e~k~~~~~dIa~a~~VPp~-llGi~~~~~~~~~~~e~~~~~f~~-------~~l~P~~~~ie~~ln~-~~~~~~~~ 334 (345) T protein:vir:37 264 DEFANIKNISAQDVLTAHRFPAG-LSGIIPTNTGGLGDPLKYREVYHY-------DEVMPLQEIIAETINQ-DPEIKNLL 334 (345) T ss_pred HHHHHHHHHhHHHHHHHhCCCHH-HhCccCCCCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHhhh-hccCCCcc Confidence 344555678899999999975 667544 3333333 3345542 2346666655554432 22345677 Q ss_pred eEEeCC--CCC Q lcl|Aclame:pro 377 AVIWDD--LNE 385 (449) Q Consensus 377 ~~~f~p--L~~ 385 (449) .+.|++ |.+ T Consensus 335 ~i~F~~~~L~~ 345 (345) T protein:vir:37 335 KIKFREQNFAK 345 (345) T ss_pred eEEecchhhcC Confidence 788864 333 No 216 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=95.87 E-value=0.0013 Score=36.34 Aligned_cols=318 Identities=12% Similarity=0.001 Sum_probs=142.5 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhh--cCccc---ccch---hccCCcccCCHHHHHHHHHcCchhHHHHhhhH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMG--LDNKR---HSAW---CEYGFPELVTYENLYSLYRRGGIAHGAVEKLV 72 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g--~~t~r---~~~~---~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa 72 (449) |+.|-..-......+......+......+.- .-+.+ +... ...+|...+++..|..+++.|.....+|..-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~~k~ 80 (344) T protein:vir:20 1 MSKKKGKTPQPAAKTMTASGPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) T ss_pred CCcccCCCCcchhhhhhccCCceEEEEcCCceEecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhhhhCccceehh Confidence 9888653211111111111111111111100 01112 1111 22245567888888888888887766666544 Q ss_pred HHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEE Q lcl|Aclame:pro 73 GKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVS 152 (449) Q Consensus 73 ~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~ 152 (449) ....+ +++ ....-. ..++++ + +.+. .++|-|++.+.-+ +.. .+..|. T Consensus 81 n~l~~-~~~--Pn~~lt----~~~f~~----~--------~~d~----ll~Gnay~~i~rn-~~G---------~~~~L~ 127 (344) T protein:vir:20 81 NILAS-TFI--PHPWLS----QQDFSR----F--------VLDF----LVFGNAFLEKRYS-TTG---------KVIRLE 127 (344) T ss_pred hhHHH-hcc--CCCCCC----HHHHHH----H--------HHHH----HhcCCeEEEEEEC-CCC---------cEEEEE Confidence 43222 111 000000 011111 1 1111 3578888876542 111 234444 Q ss_pred EeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccC----CCCCcchhHHHHHHHHHHHHHHh Q lcl|Aclame:pro 153 VSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD----YSEDAIGFLEPAYNAFVSLEKVE 228 (449) Q Consensus 153 v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~----~~~~G~s~l~~~~~~l~~~~~~~ 228 (449) ++....+... .|. + .+|++. ..+..+.+.+..|+|+.. ....|.|-+..+...+..-..+ T Consensus 128 pl~~~~vr~~---~~~---~----~~~~~~-----~~~~~~~~~~~eIiHir~~~~~~~~yGls~~~~a~~si~l~~~a- 191 (344) T protein:vir:20 128 TSPAKYTRRG---VEE---D----VYWWVP-----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESA- 191 (344) T ss_pred EcCCceeEee---ecC---C----EEEEEc-----cCCeEEEEcCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHH- Confidence 4443333221 111 1 245553 122345677788888864 3356888887776655432222 Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcc-c-cceeec----CCCceEEeecccCC Q lcl|Aclame:pro 229 GGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRG-N-DVLMTT----QGATVTPLVTSVAD 302 (449) Q Consensus 229 ~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~----~~ed~~~~~~~lsg 302 (449) .....-+|+|....=.+- .+. .....++..+++.+.+...... . ..+++. +++.++....+.+. T Consensus 192 ~~~~~~~f~NGa~p~~Il-----~~~-----d~~l~~e~~~~ik~~~~~~~g~~n~r~l~l~~p~g~~~gi~~~pis~~~ 261 (344) T protein:vir:20 192 TLFRRKYYENGAHAGYIM-----YVT-----DAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVA 261 (344) T ss_pred HHHHHHHHhccCCCceEE-----Eec-----CcCCCHHHHHHHHHHHHHhcCCCCccceEEecCCCCccceeEEEcCCCh Confidence 222223344332211110 000 1123445555565555443211 1 123332 12335554444433 Q ss_pred ----hHHHHHHHHHHHHhhhcCCceeeeccCc---cccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC Q lcl|Aclame:pro 303 ----PTATYNVNLQTAAAGVDIPTRILIGNQQ---AERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVA 374 (449) Q Consensus 303 ----l~d~~~~~~~~iaaas~IP~t~L~Gqs~---gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~ 374 (449) +-++-....+.||++.+||-. |+|..+ ++.+.-+ -.+.|+.. .+.|+.+.+..+..+ +| .. T Consensus 262 ~d~qf~e~k~~s~~eIa~af~VPp~-llGi~~~~t~~~~n~e~~~~~f~~~-------~l~P~~~~~e~in~~-lg--~~ 330 (344) T protein:vir:20 262 TKDDFFNIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVRN-------ELIPLQDRIREINGW-LG--QE 330 (344) T ss_pred hHHHHHHHHHhhHHHHHHHhCCCHH-HhccCCCCCCccccHHHHHHHHHHH-------HHHHHHHHHHHHHHh-cC--Cc Confidence 345566678899999999985 557533 3334334 34455432 245555555443322 22 23 Q ss_pred CceEEeCCCCCCCH Q lcl|Aclame:pro 375 KKAVIWDDLNEQTG 388 (449) Q Consensus 375 ~~~~~f~pL~~~se 388 (449) .|.|.++.|-.-+| T Consensus 331 ~i~F~~~~l~~~d~ 344 (344) T protein:vir:20 331 VIRFKNYSLDTDND 344 (344) T ss_pred ccccCccccccCCC Confidence 57777777766666 No 217 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=95.74 E-value=0.0015 Score=36.00 Aligned_cols=320 Identities=9% Similarity=-0.004 Sum_probs=135.2 Q ss_pred CchhhHHHHHhhhHHHHHHH-HHHHHHHHHhhcCcccccch-hc--cCCcccCCHHHHHHHHHcCchhHHHHhhhHHHHh Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMAR-ARMGLMVPTMGLDNKRHSAW-CE--YGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCW 76 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~g~~t~r~~~~-~~--~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~ 76 (449) |.-.-. +-+.+....+-.+ ....|--+...-.+.-.-.+ .. -+|...+++..|..+++.|+....++..-...-+ T Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~~~~~~~~h~~~i~~k~n~l~ 79 (345) T protein:vir:37 1 MKTNVK-TDNKKGIVIAPINDRTFSLSEITASPALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHSRANMVS 79 (345) T ss_pred CCcccc-ccchhhhcCCCceEEEeecCCcccchhhcccceeeecCCccccCCCCHHHHHHHhhcchhhcchhhhhhhHHh Confidence 433211 1111110000000 00000000000000000001 11 1456788888999999988888887765555333 Q ss_pred cCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEEEecc Q lcl|Aclame:pro 77 QTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWA 156 (449) Q Consensus 77 r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~ 156 (449) . +++ +... .+.. .+++.+.+. .++|-|++.+.-+. .. .+..|.++.. T Consensus 80 ~-~~~------Pn~~--~t~~----------~f~~~v~d~----ll~Gnay~~i~rn~-~G---------~~~~L~pl~~ 126 (345) T protein:vir:37 80 A-TYE------GGKA--LSKM----------EMRALCLNL----IQFGDVGLLKVRNG-FG---------QVVRLVPLSS 126 (345) T ss_pred h-ccC------CCCC--CCHH----------HHHHHHHHH----HhcCCeEEEEEECC-CC---------CEEEEEEecC Confidence 2 221 1000 0000 121222222 36788888776532 11 1333434332 Q ss_pred ccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 157 GSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSG 232 (449) Q Consensus 157 ~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~~~~~~a 232 (449) ..+.. ..|.. .+|++........+..+...++-|+||... ...|.|-+..+...+..-..+ .... T Consensus 127 ~~vr~---~~d~~-------~~~~~~~~~~~~~g~~~~~~~~eViHir~~~~~~~~~Gl~~~~~a~~si~l~~~a-~~~~ 195 (345) T protein:vir:37 127 LYLRV---HKDGG-------YSYLMKKSLYDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDA-TVFR 195 (345) T ss_pred ceeEE---eecCC-------eeEEEeeeeeccCceEEEEccccEEEEcCCCCCCCcccchHHHHHHHHHHHHHHH-HHHH Confidence 22221 11111 111121111111223456677888888642 345888777766554322221 1122 Q ss_pred HHHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcc---ccceeecC---CCceEEeecccCC--- Q lcl|Aclame:pro 233 ESFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRG---NDVLMTTQ---GATVTPLVTSVAD--- 302 (449) Q Consensus 233 ~l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~---~ed~~~~~~~lsg--- 302 (449) .-+|+|.... ..+. ++ .....++..+++.+.+.....+ .++++... ++.++....+.+. T Consensus 196 ~~~f~NGa~~~~Il~------~t-----~~~l~~e~~~~lk~~~~~~~g~~n~~~~~i~~~~g~~~G~~~~pl~~~~~d~ 264 (345) T protein:vir:37 196 RRYFSNGAHMGFILY------ST-----DPDLTEEMEEEIARKISESKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGTKD 264 (345) T ss_pred HHHHhccCCcceEEE------eC-----CCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceeEEEccCChhHH Confidence 2233333211 1010 00 1123345556665555543322 12233322 2334444444333 Q ss_pred -hHHHHHHHHHHHHhhhcCCceeeeccCc---cccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCce Q lcl|Aclame:pro 303 -PTATYNVNLQTAAAGVDIPTRILIGNQQ---AERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKA 377 (449) Q Consensus 303 -l~d~~~~~~~~iaaas~IP~t~L~Gqs~---gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~ 377 (449) .-++.....+.||++.+||- .|.|..+ |+.++.| -.+.|+. ..+.|+.+.+...+-. ....+.+.. T Consensus 265 qf~e~k~~~~~dI~~a~~VPp-~liGi~~~~t~~~s~~e~~~~~f~~-------~~l~P~~~~ie~~ln~-~~e~~~~~~ 335 (345) T protein:vir:37 265 EFANIKNISAQDVLTAHRFPA-GLSGIIPTNTGGLGDPLKYREVYHY-------DEVMPLQEIIAETINQ-DPEIKNLLK 335 (345) T ss_pred HHHHHHHHhHHHHHHHhCCCH-HHhccccCCCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHhhh-hhccCCcce Confidence 34555667889999999996 5557533 3444444 3455553 2345555555544432 223445677 Q ss_pred EEeCC--CCC Q lcl|Aclame:pro 378 VIWDD--LNE 385 (449) Q Consensus 378 ~~f~p--L~~ 385 (449) +.|++ |.. T Consensus 336 i~F~~~~l~k 345 (345) T protein:vir:37 336 IKFREQNFAK 345 (345) T ss_pred EEECchhhcC Confidence 77764 333 No 218 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=95.35 E-value=0.0022 Score=35.12 Aligned_cols=319 Identities=13% Similarity=0.036 Sum_probs=140.3 Q ss_pred CchhhH-HHHHh-hhHH---HHHHHHHHHHHHHHhh--cCccccc------chhccCCcccCCHHHHHHHHHcCchhHHH Q lcl|Aclame:pro 1 MTDKLT-LAVNH-ALND---ARMARARMGLMVPTMG--LDNKRHS------AWCEYGFPELVTYENLYSLYRRGGIAHGA 67 (449) Q Consensus 1 ~~~~~~-~~v~~-~~~~---~~~~~~~~~~~~~~~g--~~t~r~~------~~~~~~~~~~~~~~~l~~~Y~~~~l~r~i 67 (449) |+.|=+ -...+ +... ...+..+...+..+.- .-+.++- .+..-+|...+++..|..+++.+.....+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~~~~~h~~~ 80 (351) T protein:vir:78 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 80 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhccCceecCCCCHHHHHHHHhhhHhhhhh Confidence 875422 11111 1000 0000011111000000 0011110 11122345578888899999998888888 Q ss_pred HhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCc Q lcl|Aclame:pro 68 VEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRG 147 (449) Q Consensus 68 Vd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~ 147 (449) |..-+.+-++ +++- ... .+.. .+++-+.+. .+||.|++.+.-+. .. . T Consensus 81 l~~k~n~l~~-~~~P--n~~------~t~~----------~f~~~~~d~----ll~Gnay~~~~rn~-~G---------~ 127 (351) T protein:vir:78 81 LFFKANVLAS-TFRP--HRW------LSRH----------AFERWALDF----LTFGNGYLERRRNM-VG---------G 127 (351) T ss_pred hhhhhhHHhh-cccC--CCC------CCHH----------HHHHHHHHH----HhcCCeEEEEEECC-CC---------C Confidence 8766554433 2210 000 0000 111112222 36788887776532 11 1 Q ss_pred eeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccC----CCCCcchhHHHHHHHHHH Q lcl|Aclame:pro 148 LQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD----YSEDAIGFLEPAYNAFVS 223 (449) Q Consensus 148 l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~----~~~~G~s~l~~~~~~l~~ 223 (449) +..|.++....+.+. .+.. .+|++. +.+..+.+.+..||||.+ ....|.|.+..+...+.. T Consensus 128 ~~~L~pl~~~~v~~~---~~~~-------~~~~~~-----~~~~~~~~~~~eVihir~~~~~~~~yGl~~~~~a~~si~l 192 (351) T protein:vir:78 128 TLRLEPALAKYVRRK---ADFS-------GFVYVN-----GWQERHEFAPDSVFQLVRPDINQEVYGLPEYLSSLHSAWL 192 (351) T ss_pred EEEEEEecCcceEEe---eeCC-------eEEEEe-----cCCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHH Confidence 233444433322221 1110 133332 122345677777888854 345688888887776543 Q ss_pred HHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc---cce-eecC---CCceEEe Q lcl|Aclame:pro 224 LEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN---DVL-MTTQ---GATVTPL 296 (449) Q Consensus 224 ~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-l~~~---~ed~~~~ 296 (449) -..+. ....-+|+|....=.+- .+. .....++..+++.+.+... +|. +.+ ++.. ++.++.. T Consensus 193 ~~~a~-~~~~~~f~NGa~pggIl-----~~~-----~~~ls~e~~~~lr~~~~~~-~G~~N~~~~~v~~~~g~~~g~k~~ 260 (351) T protein:vir:78 193 NESST-LFRRKYYENGSHAGFIL-----YMT-----DAAQKQDDVDNMRDALKNA-KGPGNFRNVFMYAPGGKKDGIQLI 260 (351) T ss_pred HHHHH-HHHHHHHhccCCCceEE-----Eec-----CCCCCHHHHHHHHHHHHHh-cCcccccceeeecCCCCccceeEE Confidence 32222 22223344432211000 000 1123455556665555443 222 223 3322 3444554 Q ss_pred ecccCC----hHHHHHHHHHHHHhhhcCCceeeeccCc---cccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh Q lcl|Aclame:pro 297 VTSVAD----PTATYNVNLQTAAAGVDIPTRILIGNQQ---AERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELK 368 (449) Q Consensus 297 ~~~lsg----l~d~~~~~~~~iaaas~IP~t~L~Gqs~---gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~ 368 (449) ..+.+. +-++.....+.||++.+||- .|.|..+ ++.++.+ -.+.||. +.+.|+.+.+..+..+ T Consensus 261 pls~~~~d~qf~e~k~~~~~eIa~a~~VPp-~llGi~~~~t~~~sn~e~~~~~f~~-------~~l~P~~~~iee~n~~- 331 (351) T protein:vir:78 261 PVSEVAAKDEFFNIKNVTRDDLLAAHRVPP-QLLGIVPSNSGGFGTPDTAARVFGR-------NEIRPLQARFAELNDW- 331 (351) T ss_pred EcCCChhHHHHHHHHHHhHHHHHHHhCCCH-HHhcccCCCCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHHhh- Confidence 444433 44555667778999999997 5557644 3333334 2344442 2344555555443322 Q ss_pred cCCCCCCceEEeCCCCCCCHHHHH Q lcl|Aclame:pro 369 IIDAVAKKAVIWDDLNEQTGTEKL 392 (449) Q Consensus 369 ~~~~~~~~~~~f~pL~~~sekE~A 392 (449) ++ .+ .|+|++---+...++| T Consensus 332 l~---~~-~~~F~~~~Llr~d~ka 351 (351) T protein:vir:78 332 LG---DE-VVRFDDYEIPPAPVAA 351 (351) T ss_pred cC---cc-ceecChhhhccccccC Confidence 11 22 3667665555555555 No 219 >protein:vir:104892 Length: 558 # NCBI annotation: T4-like capsid assembly protein # Family: family:all:1036 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214363;genbank:gi:61806003;genbank:GeneID:3294412 Probab=95.31 E-value=0.0023 Score=35.04 Aligned_cols=415 Identities=15% Similarity=0.119 Sum_probs=178.5 Q ss_pred CchhhHHHHHh----hhHHHHHH-HHHH-HHHHHHhhcCcccccchhccCC-cccCCHHHHHHHHHc---CchhHHHHhh Q lcl|Aclame:pro 1 MTDKLTLAVNH----ALNDARMA-RARM-GLMVPTMGLDNKRHSAWCEYGF-PELVTYENLYSLYRR---GGIAHGAVEK 70 (449) Q Consensus 1 ~~~~~~~~v~~----~~~~~~~~-~~~~-~~~~~~~g~~t~r~~~~~~~~~-~~~~~~~~l~~~Y~~---~~l~r~iVd~ 70 (449) |.+=.--.... ..+..+.+ -+.+ +..+..+|+-.. .-++. +...+-.+|-..||+ ++.+..+|+. T Consensus 1 m~~lfgf~~~~~~~~~~~~~s~~~p~~ddg~~~~~~~g~~~-----~~~~~~~~~~~~~eLI~~YR~ma~~pEvd~Av~e 75 (558) T protein:vir:10 1 MAKLFGFSIEETQKKSTSIISPVPKNNEDGVDNFISSGFYG-----QYVDIEGAYRSEYDLIRRYREMALHPEADGAIED 75 (558) T ss_pred CcchhcchhhhhhhhccCCccccCCCccccccceeccceee-----eeecccchhhhHHHHHHHHHHHhhccchhhHHHH Confidence 32211111100 00000000 0001 111111111100 01111 234455778888876 7889999999 Q ss_pred hHHHHhcC-----CcEEe-cCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccEEEEEEecCCCccccccc Q lcl|Aclame:pro 71 LVGKCWQT-----NPEII-EGDDADDSEDETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPAT 143 (449) Q Consensus 71 pa~d~~r~-----~~~i~-~~~~~~~~~~~~~~e~~~~~l~~-~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~ 143 (449) ++.||+-. .+.|. ...+.. ......|-.+.+.+.. .++.++..+..|.--+.|--++-..+ |.+.+ T Consensus 76 IVneaiv~d~~~~pV~i~Ld~~~~s-~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRiyfHKii-d~k~p----- 148 (558) T protein:vir:10 76 VVNEAIVSDLYDSPVEVELSNLNAS-NTLKKKIREEFRYIKEMMDFDKKSHEIFRNWYVDGRVFYLKVI-DTKNP----- 148 (558) T ss_pred hhcceeEecCCCceEEEEecccCcc-hHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEE-eCCCc----- Confidence 99998632 11121 111111 1112222222222221 14456666666544444433333333 33332 Q ss_pred ccCceeeEEEeccccCChhh-h------------hccccccccCCc---eeEEeeeccc-----C---CCccceEEccce Q lcl|Aclame:pro 144 KGRGLQKVSVSWAGSLKVAE-W------------DTGINSKTYGQP---KLWKYTERLP-----N---GSSRRVDIHPDR 199 (449) Q Consensus 144 ~~~~l~~i~v~~~~~i~~~~-~------------~~Dp~s~~yg~P---~~y~i~~~~~-----~---~~~~~~~IH~SR 199 (449) .+||..++-+++..+..-. . .++-.. -.+.| ++|..++... + +.+.+++||.+= T Consensus 149 -k~GI~ELr~lDPr~i~~Vr~i~~~~~~~~~~~~~~~~~~-~~~~~~~~eyy~Y~~~~~~~~~~~~~~~~~~~vkI~~dA 226 (558) T protein:vir:10 149 -QEGIQDLRYIDPLKIKFIRQEKRKPGNQDPAIRVRSEQD-VVPNPEFEEFYIYTPKVQHPTGMVGQMGGKNSIKIAKDS 226 (558) T ss_pred -cccceeeeeeCcccceeeeeeccccccccceeeeecccc-eeeccceeEeeeecCCcccccccceeecCCCceeechhh Confidence 2355555554444442211 1 111111 01111 2332322110 0 123346666652 Q ss_pred -------eeeccCCCCCcchhHHHH---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhh---hHHHHHhhhccChHH Q lcl|Aclame:pro 200 -------VFILGDYSEDAIGFLEPA---YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEI---DFTNLASLYGVSIDE 266 (449) Q Consensus 200 -------li~~~~~~~~G~s~l~~~---~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~ 266 (449) |...+++.. .|.|.++ +|.|+-++.+ -.||+- ....++.+ ++-+|+... .++ T Consensus 227 I~y~hSGL~d~~~~~i--~syLhkAIKp~NQLkmlEDA-----lVIYRi-----tRAPERRvFYIDVGnLPk~K---Aeq 291 (558) T protein:vir:10 227 ITMCTSGLVDRNKNRV--LSYLHKAIKALNQLRMIEDS-----LVIYRL-----SRAPERRIFYIDVGNLPKVK---AEQ 291 (558) T ss_pred eeeecccceecCCCee--eecchHhhHhHHhhHHHHhh-----HHHHhh-----hccccceEEEEecCCCCchh---HHH Confidence 222222222 2556553 3444443332 122321 12222221 233333321 122 Q ss_pred HHHHHHHHHHHHhc------ccc--------c-ee---------ecCCCceEEeec--ccCChHHHHHHHHHHHHhhhcC Q lcl|Aclame:pro 267 LQDKFNEVAGEINR------GND--------V-LM---------TTQGATVTPLVT--SVADPTATYNVNLQTAAAGVDI 320 (449) Q Consensus 267 ~~~~~~~~~~~~~~------~~~--------~-~l---------~~~~ed~~~~~~--~lsgl~d~~~~~~~~iaaas~I 320 (449) - ++.++..+.+ .++ + ++ -+.+.+++++.. +|+-++|+ ..|...+=-|.++ T Consensus 292 Y---lr~iM~k~KNklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnLgem~DV-~YF~kKLy~aLnV 367 (558) T protein:vir:10 292 Y---LKEVMSRYRNKLVYDANTGEVRDDRKFMSMMEDFWLPRREGGRGTEITTLPGGQNLGELSDV-DYFQKKLYRALGV 367 (558) T ss_pred H---HHHHHHhccceEEEeccCceecccchhhhhHhhhcccccCCCCccceeeccccCCcchHHHH-HHHHHHHHHHhCC Confidence 1 1222221110 000 0 00 023446777643 57777775 6788999999999 Q ss_pred CceeeeccCcccc--ccch---hHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhcCCC------CCCceEEeCCCCCCCH Q lcl|Aclame:pro 321 PTRILIGNQQAER--SSTE---DQKYFNARCQSRRVDLSFEIEDFCD-KLIELKIIDA------VAKKAVIWDDLNEQTG 388 (449) Q Consensus 321 P~t~L~Gqs~gg~--~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~-~l~~~~~~~~------~~~~~~~f~pL~~~se 388 (449) |+++|=.+ .|.+ .|+| |.-.|...|.++|..+..-..+.|. .|++-+...+ ..++.|+|.-=..-+| T Consensus 368 P~SRl~~e-~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~E 446 (558) T protein:vir:10 368 PESRIAAE-GGFNLGRSSEILRDELKFAKFVGRLRKRFAAMFNDMLKTQLVLKNIVTPEDWKTMEDHIQYDFLYDNQFAE 446 (558) T ss_pred CccccCCC-CcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHH Confidence 99998443 3322 2445 8888999999999877665666665 3555555443 2478999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-----------ccccCHHHHHHH----------hcCCCCC-CCCC-----CC------ Q lcl|Aclame:pro 389 TEKLTNAKTMGEINQTMLGSGD-----------NPAFSREEIRTA----------AGYDNDD-EEPL-----GE------ 435 (449) Q Consensus 389 kE~Aei~~~~A~a~~~~~~~g~-----------~~~~~~~e~r~~----------~~~~~~~-~~~~-----~~------ 435 (449) -..+|+...+..+++.+-.-.. +--.|.+|+.+. .-+..++ .+++ +. T Consensus 447 lKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeeI~~~~kqI~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~ 526 (558) T protein:vir:10 447 LKESELMEGRLGMLATIEPYIGKYYSTEYVRKRVLRQTDMEIEEIDTQIEDEIQKGIIPDPSQIDPITGEPLPQEGDPAM 526 (558) T ss_pred HHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCCccccChhhccccCccCCchh Confidence 9999999999888776532110 011344444322 1122121 1111 00 Q ss_pred -------CCcchhh--cccccCC Q lcl|Aclame:pro 436 -------EDGDEED--KATDSAA 449 (449) Q Consensus 436 -------~~~~ee~--~~~~~~a 449 (449) ++++-+. .++++++ T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~ 549 (558) T protein:vir:10 527 EGMGEQPVDPDLEAQAQAVDAQY 549 (558) T ss_pred ccCCCCCcccccccchhhhhhhh Confidence 0001111 1111111 No 220 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=95.28 E-value=0.0024 Score=34.96 Aligned_cols=398 Identities=8% Similarity=-0.013 Sum_probs=145.6 Q ss_pred CchhhHHHHHh--------hhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHcCchhHHHHhhhH Q lcl|Aclame:pro 1 MTDKLTLAVNH--------ALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLV 72 (449) Q Consensus 1 ~~~~~~~~v~~--------~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa 72 (449) |..|-+.--+. ....+..+..+..+.+-..++-+... .....-.+. ...-++.|-+ +.-...++.+-- T Consensus 1 m~kk~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~iLr~~~--~~~ly~~m~~-D~hi~s~l~~Rk 76 (448) T protein:vir:77 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDRE-FDELLQGKD--GLLVYHKMLS-DGTVKNALNYIF 76 (448) T ss_pred CCCCCCCCcccCCcccccchhhhhhhccchhhhcccccccccccc-hhHhhcccc--chHHHHHHhh-ChHHHHHHHHHH Confidence 65443311000 00111111222222222222122111 111111111 1233444544 566677777777 Q ss_pred HHHhcCCcEEecCCChhhHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHhccccccEEEEEEec---CCCccccccccc Q lcl|Aclame:pro 73 GKCWQTNPEIIEGDDADDSEDE-TSWEKKSKQV---FTNRLWRSFAEADRRRLVGRYAGILLHIR---DEKDWNLPATKG 145 (449) Q Consensus 73 ~d~~r~~~~i~~~~~~~~~~~~-~~~e~~~~~l---~~~~~~~~~~ea~~~~rl~Gga~i~i~i~---d~~~~~~Pl~~~ 145 (449) .-.++.-|+|..+.+..+.... ..++..+... +..--|..+...+-.+.+||+|++=+.-+ ||. + .|-. T Consensus 77 ~av~~~~w~v~p~~~~~~d~~~ae~v~~~l~~~~~~~~~~~f~~~i~~~lda~~~G~s~~Eivw~~~~dg~-~-~~~~-- 152 (448) T protein:vir:77 77 GRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYENAYIYGMAAGEIVLTLGADGK-L-ILDK-- 152 (448) T ss_pred HHHhcCCceEecCCCCHHHHHHHHHHHHHhhchhhhhccCCHHHHHHHHHHhhhhcceeEEEEEeecCCCc-e-eecc-- Confidence 7777677777543332222222 1222222110 00001333444445678899999755432 222 1 1111 Q ss_pred CceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCC--------ccceEEccceeeeccCCCCCcchhHHHH Q lcl|Aclame:pro 146 RGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGS--------SRRVDIHPDRVFILGDYSEDAIGFLEPA 217 (449) Q Consensus 146 ~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~--------~~~~~IH~SRli~~~~~~~~G~s~l~~~ 217 (449) | .++.+-++..+..|+. +............++. ..++-||+.+ - ..+..+|.++++.| T Consensus 153 -----l--~~r~~~~~~~f~~~~~----~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~-~--~~g~p~g~gLlr~~ 218 (448) T protein:vir:77 153 -----I--VPIHPFNIDEVLYDEE----GGPKALKLSGEVKGGSQFVNGLEIPIWKTVVFLH-N--DDGSFTGQSALRAA 218 (448) T ss_pred -----c--cccCCCccceeeeecC----CceEEEecCCcccccccCCCccccccceEEEEec-C--CcCCcccchHHHHH Confidence 0 0111111111111110 0011100000000000 0112244332 1 22456799999999 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc-ceeecCCCceEEe Q lcl|Aclame:pro 218 YNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND-VLMTTQGATVTPL 296 (449) Q Consensus 218 ~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ed~~~~ 296 (449) |....--.....-++.-+-+...-...-++. ......++..+.+.+++..+..+.+ .+++.++.+++.+ T Consensus 219 ~w~~~fK~~~~~~w~~f~E~yG~P~~vgky~----------~ga~~~~~~~~~l~~av~~i~~g~~a~~iiP~g~~ie~~ 288 (448) T protein:vir:77 219 VPHWLAKRALILLINHGLERFMIGVPTLTIP----------KSVRQGTKQWEAAKEIVKNFVQKPRHGIILPDDWKFDTV 288 (448) T ss_pred HHHHHHHHhhHHHHHHHHHHcCCceeEEecC----------CCCCCCHHHHHHHHHHHHHHhcCCceEEEecCCceEEEE Confidence 9865432222222222111111100000100 0001122344445555555544433 4667778888888 Q ss_pred ecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccc-c-hhH-HHHHHHHHHHHHhhhHHHHH-HHHHHHHHhcC Q lcl|Aclame:pro 297 VTSVA--DPTATYNVNLQTAAAGVDIPTRILIGNQQAERSS-T-EDQ-KYFNARCQSRRVDLSFEIED-FCDKLIELKII 370 (449) Q Consensus 297 ~~~ls--gl~d~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s-~-eD~-~nyyd~I~~~Qe~~~~p~~~-~l~~l~~~~~~ 370 (449) ++.-+ ...++++..-.+||-+.--. | |.-++.||.++ . ++. ....+.+.+.-..+..-+.+ ++..|+...++ T Consensus 289 ea~~~~~~~~~~i~~~d~~Isk~iLGq-t-lTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~Li~~l~~lNfg 366 (448) T protein:vir:77 289 DLKSAMPDAIPYLTYHDAGIARALGID-F-NTVQLNMGVQAVNIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWP 366 (448) T ss_pred ecCCCccCHHHHHHHHHHHHHHHHhcc-c-cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 77532 24455555555666432111 1 11011122211 1 222 22334444433333343443 44556677766 Q ss_pred CCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHHHHHhcCCCCCCC-------------CCCCCC Q lcl|Aclame:pro 371 DAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEE-------------PLGEED 437 (449) Q Consensus 371 ~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~r~~~~~~~~~~~-------------~~~~~~ 437 (449) ....--.|.|.-.-..+-+ +.|+.+.++++. +|+..++....++ ...+++ T Consensus 367 ~~~~~P~~~f~~~e~eDl~-------~~a~~~~~l~~~----------~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 429 (448) T protein:vir:77 367 GATRFPRLTFEMEERNDFS-------AAANLMGMLINA----------VKDSEDIPTELKALIDALPSKMRRALGVVDEV 429 (448) T ss_pred CCCCCCEEEecCCChhhHH-------HHHHHhHHHHHH----------HHHHhcCCccCCcCCCCCchhcccccCCCCCC Confidence 4322225566433222222 345555555432 3343333221110 111111 Q ss_pred cchhhcccccCC Q lcl|Aclame:pro 438 GDEEDKATDSAA 449 (449) Q Consensus 438 ~~ee~~~~~~~a 449 (449) .++....+++-+ T Consensus 430 ~~~~~~~~~~~~ 441 (448) T protein:vir:77 430 REAVRQPADSRY 441 (448) T ss_pred CchhhcchhhHH Confidence 222222222323 No 221 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=95.23 E-value=0.0025 Score=34.86 Aligned_cols=239 Identities=10% Similarity=-0.020 Sum_probs=102.8 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCC-cccCCHHHHHHHHHcCchhHHHHhhhHHHHhcCC Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGF-PELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTN 79 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~-~~~~~~~~l~~~Y~~~~l~r~iVd~pa~d~~r~~ 79 (449) ++.|.+. +..... . .....+.... ..-.+. ...++.+ -+.+++-+..+|++.+++.-+-. T Consensus 3 lF~~~~~--r~~~~~-~--~~~~~~~~~~----------~~~~~~~~~~v~~~----~al~~~~v~~~i~~ia~~iA~lp 63 (251) T protein:vir:46 3 IFYKNEK--RDLQYN-E--DDLQMMVQTL----------PSFQGTKLRQYKDI----EAIRHSDIFTAVMMIASDLARMP 63 (251) T ss_pred ccccccc--cccCCC-c--cchhhhhhhh----------ccccCcCcceechh----hhhccHHHHHHHHHHHHhHhhCc Confidence 2222210 000000 0 0000000000 000000 0112222 23456677889999999999988 Q ss_pred cEEecCCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc-cccccEEEEEEecCCCcccccccccCceeeEEEeccc Q lcl|Aclame:pro 80 PEIIEGDDADDSEDETSWEKKSK-QVFTNRLWRSFAEADRRR-LVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAG 157 (449) Q Consensus 80 ~~i~~~~~~~~~~~~~~~e~~~~-~l~~~~~~~~~~ea~~~~-rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~v~~~~ 157 (449) +++....+.... ..+...+. +-....-+..+.+++.+. .++|-|++++.- ++.. .+..|.|+... T Consensus 64 ~~~~~~~~~~~~---~~~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r-~~~G---------~~~~L~~i~~~ 130 (251) T protein:vir:46 64 IRVTVNGQINYS---DRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITR-DKTG---------EPMNLTFRKTS 130 (251) T ss_pred eEEeeCcccccc---chHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEE-CCCC---------cEEEEEEECCc Confidence 888654332211 11111121 111111122344444444 456777666643 3221 24455565555 Q ss_pred cCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC---CCcchhHHHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 158 SLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEKVEGGSGES 234 (449) Q Consensus 158 ~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~---~~G~s~l~~~~~~l~~~~~~~~~~a~l 234 (449) .+++.. | +.|.+.++.. .......+....+.++.||||...+ ..|.|.++.+.+.|.....+.... .- T Consensus 131 ~v~v~~---~----~~g~~~~~~~-~~~~~~~g~~~~~~~~diiH~r~~~~dg~~G~spi~~~~~~i~~~~~~~~~~-~~ 201 (251) T protein:vir:46 131 EIELKS---D----ARGRLYYFHQ-RIDSNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFL-NN 201 (251) T ss_pred eEEEEE---C----CCCcEEEEEE-EeccCCcceeEEECCccEEEecCcCCCCeeecCHHHHHHHHHHHHHHHHHHH-HH Confidence 554422 1 1245544332 2222222334678899999997643 368999999888775544443332 23 Q ss_pred HHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc---cceeecCCC Q lcl|Aclame:pro 235 FLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN---DVLMTTQGA 291 (449) Q Consensus 235 ~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~e 291 (449) ++++..+. ..+++. +.+ ..++..+++.+......++. +.+.++.++ T Consensus 202 ~f~ng~~p~gil~~~---------~~l--~~~e~~~~~~~~~~~~~~g~~n~g~~~~gm~~ 251 (251) T protein:vir:46 202 FLRNGTHAGGILKMK---------GVL--DNKKARDRAREEFPKVLVELNKLGKLSYSMNQ 251 (251) T ss_pred HHHccCCCcEEEEeC---------CCC--CCHHHHHHHHHHHHHHhcCcccccccccccCC Confidence 33433221 111111 100 12344455555555444443 223344443 No 222 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=95.21 E-value=0.0025 Score=34.82 Aligned_cols=326 Identities=12% Similarity=0.013 Sum_probs=138.4 Q ss_pred CchhhHHHHHhhhHHHHHHH-HHHHHHHH-----HhhcCccccc---chhccCCcccCCHHHHHHHHHcCchhHHHHhhh Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMAR-ARMGLMVP-----TMGLDNKRHS---AWCEYGFPELVTYENLYSLYRRGGIAHGAVEKL 71 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~-~~~~~~~~-----~~g~~t~r~~---~~~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~p 71 (449) =.-+...+..++........ .+...+.+ ++....--+. .+..-+|...+++.-|..+|+.+.....++..- T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~p~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~la~~~~~~~~h~~~~~~~ 92 (368) T protein:vir:79 13 ASAHVRTANTDAPTEHHTDRAAQAEVFSFGDPVEVLDRRELLDYVECMRMGQWYEPPMPWDGLARSFRAAAHHSSAVYVK 92 (368) T ss_pred cCcccccccccCcchhhccccCceEEEEcCCceeecchhhHHHHHHHHhccchhccCcCHHHHHHHHhhccccchhhhhh Confidence 11111101111000000000 00000000 0000000000 011113445677777777888776554443321 Q ss_pred HHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCceee Q lcl|Aclame:pro 72 VGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRGLQK 150 (449) Q Consensus 72 a~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~l~~ 150 (449) .. +.+-.++ +... .+.. .++.-+.+. .++|-|++.+.-+ .|+ +.. T Consensus 93 ~n-~l~l~~~------Pn~~--~t~~----------~f~~l~~d~----ll~Gnay~~~~r~~~G~-----------~~~ 138 (368) T protein:vir:79 93 RN-ILVSTFI------PHPL--LSRA----------TFERLVLDW----QVFGNAYLERRENVLGG-----------TIR 138 (368) T ss_pred cc-hhhhhcC------CCcC--CCHH----------HHHHHHHHH----hhcCCeEEEEEEcCCCC-----------EEE Confidence 11 1111110 1000 0000 111111121 4688888877653 222 223 Q ss_pred EEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHH Q lcl|Aclame:pro 151 VSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEK 226 (449) Q Consensus 151 i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~ 226 (449) |.++....+... .|. + .+|++. +.+..+.+.+.-|+|+... ...|.|-++.+...+..-.. T Consensus 139 L~~l~~~~v~~~---~~~-----~--~~~~~~-----~~~~~~~~~~~dIihir~~~~~~~~yGlsp~~~a~~si~l~~a 203 (368) T protein:vir:79 139 LDTPLAKYVRRG---LDL-----N--TYFFVQ-----NWQQPYTFAAGSVFHLQEPDINQEVYGLPEYLSALNATWLNES 203 (368) T ss_pred EEEeCcccceee---ccC-----C--EEEEEe-----cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHH Confidence 334333322211 111 1 233332 1233567788888888643 35699988888776654333 Q ss_pred HhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcc--cc-ceeec---CCCceEEeeccc Q lcl|Aclame:pro 227 VEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRG--ND-VLMTT---QGATVTPLVTSV 300 (449) Q Consensus 227 ~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~l~~---~~ed~~~~~~~l 300 (449) +.. ...-+|+|....=.+- .+. .....++..+++.+.+...... .+ .+++. +++.++.+..+. T Consensus 204 a~~-~~~~~~~NGa~~~gil-----~~~-----~~~l~~e~~~~lk~~~~~~~G~~N~g~~~vl~~~g~~~g~~~~pls~ 272 (368) T protein:vir:79 204 ATL-FRRRYYKNGSHAGFIL-----YMT-----DAAQKQEDVDTLREAMKSAKGPGNFRNLFMYAPNGKKDGIQLLPVSE 272 (368) T ss_pred HHH-HHHHHHhccCCCceEE-----EeC-----CCCCCHHHHHHHHHHHHHhcCCcccCceeEecCCCCccceeEEEcCC Confidence 222 2233344433221110 000 1123455566666655543211 12 23332 233344444444 Q ss_pred CC----hHHHHHHHHHHHHhhhcCCceeeeccCc---cccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 301 AD----PTATYNVNLQTAAAGVDIPTRILIGNQQ---AERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA 372 (449) Q Consensus 301 sg----l~d~~~~~~~~iaaas~IP~t~L~Gqs~---gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~ 372 (449) +. +-++.....++||++.+||- .|+|..+ ++.+.-+ -.+.||.. .+.|+.+.+..+..+ ++ T Consensus 273 ~~~d~qf~e~k~~~~~eIa~af~VPp-~llGi~~~~t~~~sn~e~~~~~f~~~-------~l~Pl~~~ie~ln~~-l~-- 341 (368) T protein:vir:79 273 VAAKDEFWNIKNVTRDDQLAAHRVPP-QLMGIIPNNTGGFGDVEKAAMVFARN-------EVKPLQDRLLAINDW-IG-- 341 (368) T ss_pred CHHHHHHHHHHHHhHHHHHHHhCCCH-HHccccCCCCCccccHHHHHHHHHHH-------HHHHHHHHHHHHHhc-cC-- Confidence 33 34556677889999999996 6667544 3333333 34555432 345565555443221 22 Q ss_pred CCCceEEeCC--CCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 373 VAKKAVIWDD--LNEQTGTEKLTNAKTMG 399 (449) Q Consensus 373 ~~~~~~~f~p--L~~~sekE~Aei~~~~A 399 (449) ...++|++ |...+.+.+|+-..+-| T Consensus 342 --~e~~rF~~~~l~~~D~~a~a~~~~rsa 368 (368) T protein:vir:79 342 --DEVVRFAPYALGGHDQPAAAPGGQRSA 368 (368) T ss_pred --cceeeechhHhhcccccccCCcccccC Confidence 12355665 77777777777665555 No 223 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=95.17 E-value=0.0026 Score=34.74 Aligned_cols=320 Identities=13% Similarity=0.039 Sum_probs=140.2 Q ss_pred CchhhH-HHHHh-hhHH---HHHHHHHHHHHHHHhh--cCccccc------chhccCCcccCCHHHHHHHHHcCchhHHH Q lcl|Aclame:pro 1 MTDKLT-LAVNH-ALND---ARMARARMGLMVPTMG--LDNKRHS------AWCEYGFPELVTYENLYSLYRRGGIAHGA 67 (449) Q Consensus 1 ~~~~~~-~~v~~-~~~~---~~~~~~~~~~~~~~~g--~~t~r~~------~~~~~~~~~~~~~~~l~~~Y~~~~l~r~i 67 (449) |+.|=+ -...+ +... ...+..+...+..+.- .-+.++- .+..-+|...+++..|..+++.|+....+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~~~~~h~~~ 80 (351) T protein:vir:79 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 80 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHhhhhh Confidence 875422 11111 1000 0000011111000000 0011110 11122345578888899999999888888 Q ss_pred HhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCc Q lcl|Aclame:pro 68 VEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRG 147 (449) Q Consensus 68 Vd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~ 147 (449) |..-+.+-++ +++- . +. .+.. .+++-+.+. .++|.|++.+.-+. .. . T Consensus 81 l~~k~n~l~~-~~~P---n-p~----~t~~----------~f~~~v~d~----ll~Gnay~~~~r~~-~G---------~ 127 (351) T protein:vir:79 81 LFFKANVLAS-TFRP---H-RW----LSRH----------AFERWALDF----LTFGNGYLERRRNM-VG---------G 127 (351) T ss_pred hhhhhhHHhh-cccC---C-CC----CCHH----------HHHHHHHHH----HhcCCeEEEEEECC-CC---------C Confidence 8766554433 2210 0 00 0000 111112222 36788887776532 11 1 Q ss_pred eeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHH Q lcl|Aclame:pro 148 LQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVS 223 (449) Q Consensus 148 l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~ 223 (449) +..|.++....+.+. .|. + .+|++. +.+..+.+.+..|||+... ...|.|-+..+...+.. T Consensus 128 ~~~L~~l~~~~v~~~---~~~---~----~~~~~~-----~~g~~~~~~~~eIihir~~~~~~~~yGl~~~~~a~~si~l 192 (351) T protein:vir:79 128 TLRLEPALAKYVRRK---ADF---S----GFVYVN-----GWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWL 192 (351) T ss_pred EEEEEEeCCcceeee---ecC---C----eEEEEe-----cCceEEEEcCccEEEeCCCCCCCCcccccHHHHHHHHHHH Confidence 334444433333321 111 1 133332 1223455677888888543 35688888887776643 Q ss_pred HHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhc--c-ccceeecC---CCceEEee Q lcl|Aclame:pro 224 LEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINR--G-NDVLMTTQ---GATVTPLV 297 (449) Q Consensus 224 ~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~---~ed~~~~~ 297 (449) -..+. ....-+|+|....=.+- .+. .....++..+++.+.+..... + -+.+++.. ++.++... T Consensus 193 ~~~a~-~~~~~~f~NGa~pg~il-----~~~-----~~~ls~e~~~~lk~~~~~~~G~~N~~~~~v~~~~g~~~gi~~~p 261 (351) T protein:vir:79 193 NESST-LFRRKYYENGSHAGFIL-----YMT-----DAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIP 261 (351) T ss_pred HHHHH-HHHHHHHhccCCCceEE-----Eec-----CCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEE Confidence 22222 22223344432211110 000 012234555555555544321 1 12233322 33455554 Q ss_pred cccCC----hHHHHHHHHHHHHhhhcCCceeeeccCc---cccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc Q lcl|Aclame:pro 298 TSVAD----PTATYNVNLQTAAAGVDIPTRILIGNQQ---AERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKI 369 (449) Q Consensus 298 ~~lsg----l~d~~~~~~~~iaaas~IP~t~L~Gqs~---gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~ 369 (449) .+.+. +-++-....+.||++.++|- .|+|..+ ++.+.-| -.+.||.. .+.|+.+.+..+-.+ + T Consensus 262 l~~~~~d~ef~e~k~~s~~eI~~a~~VPp-~llGi~~~~t~~~~n~e~~~~~f~~~-------~l~Pl~~~ie~ln~~-l 332 (351) T protein:vir:79 262 VSEVAAKDEFFNIKNVTRDDLLAAHRVPP-QLLGIVPSNSGGFGTPDTAARVFGRN-------EIRPLQARFAELNDW-L 332 (351) T ss_pred cCCChhHHHHHHHHHHhHHHHHHHhCCCH-HHhcccCCCCCCcccHHHHHHHHHHH-------HHHHHHHHHHHHHhh-c Confidence 44443 44566667889999999996 5558644 3333334 34455532 234444444433221 1 Q ss_pred CCCCCCceEEeCCCCCCCHHHHH Q lcl|Aclame:pro 370 IDAVAKKAVIWDDLNEQTGTEKL 392 (449) Q Consensus 370 ~~~~~~~~~~f~pL~~~sekE~A 392 (449) + .+ -++|++---+....+| T Consensus 333 g---~~-~~~F~~~~llr~d~~a 351 (351) T protein:vir:79 333 G---DE-VVTFDDYEIPPAPVAA 351 (351) T ss_pred C---cc-eeeeChhhhccccccC Confidence 1 22 3577775555444444 No 224 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=94.68 E-value=0.0038 Score=33.87 Aligned_cols=200 Identities=12% Similarity=0.087 Sum_probs=96.7 Q ss_pred EEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCCC----CCcchhHHHHHHHHHHHHH Q lcl|Aclame:pro 151 VSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS----EDAIGFLEPAYNAFVSLEK 226 (449) Q Consensus 151 i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~~----~~G~s~l~~~~~~l~~~~~ 226 (449) +++ ..| |. -.|.+........+..+.++++.|+||.+.. +.|.|-++.+...+... . T Consensus 1 ~r~-----------~~d------g~-~~y~~~~~~~~~~g~~~~~~~~eilH~r~~~~~~~~~Glspi~~a~~~i~~~-~ 61 (219) T protein:vir:98 1 MRV-----------CKD------GN-YKYLMKKSLYDTKSEIYEYNKNDVIFIKLYDPMQQVYGSPDYVGGITSALLN-S 61 (219) T ss_pred Cce-----------eec------Ce-EEEEEecceecCCceeEEeccccEEEecCCCCCCCcceecHHHHHHHHHHHH-H Confidence 111 111 11 1222222222223445778999999997533 45998887776555332 2 Q ss_pred HhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhh-hccChHHHHHHHHHHHHHHhccc--cceeec------CCCceEEee Q lcl|Aclame:pro 227 VEGGSGESFLKNAARQLNVNFEKEIDFTNLASL-YGVSIDELQDKFNEVAGEINRGN--DVLMTT------QGATVTPLV 297 (449) Q Consensus 227 ~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~------~~ed~~~~~ 297 (449) +.......++++....=.+ ... .....++..+++.+.+.....+. ..+++. ++-+|+.++ T Consensus 62 aa~~~~~~~f~Ng~~p~gi-----------l~~~~~~l~~e~~~~~~~~~~~~~g~~n~~~~~l~~~gg~~~G~~~~~~~ 130 (219) T protein:vir:98 62 DATIFRRRYYSNGAHMGFI-----------LYSTDPDMTEEMEDEIAERIRDSKGVGNFRSMFVNIAGGHPDGLKVIPIG 130 (219) T ss_pred HHHHHHHHHHhcCCCCceE-----------EEeCCCCCCHHHHHHHHHHHHHhcCcccccceeEecCCCCccceeEEEcc Confidence 2222333344443222111 101 11233455555555544422111 123332 123566666 Q ss_pred cccC--ChHHHHHHHHHHHHhhhcCCceeeeccC---ccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 298 TSVA--DPTATYNVNLQTAAAGVDIPTRILIGNQ---QAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIID 371 (449) Q Consensus 298 ~~ls--gl~d~~~~~~~~iaaas~IP~t~L~Gqs---~gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~ 371 (449) .+.. .+-+......+.||.+-++|-.+| |.. +++.++.| -.+.|| +..+.|.++.++.-+-..+ . T Consensus 131 ~~~~d~qfle~rk~~~~eIa~~fgVPp~~l-G~~~~~~~~~sn~eq~~~~f~-------~~tL~P~~~~ie~~ln~~~-~ 201 (219) T protein:vir:98 131 DTGQKDEFANIKNISAQDVLTSHRFPPGLS-GIIPVNTAGLGDPLKIREAYQ-------ADEVLPLQEIIAESINSDY-E 201 (219) T ss_pred CCHHHHHHHHHHHhhHHHHHHHhCCCHHHc-ccccCCCCCccCHHHHHHHHH-------HHHHHHHHHHHHHHhhhhh-c Confidence 5543 345556667889999999998754 643 33333333 234454 2345777766665553322 3 Q ss_pred CCCCceEEeCCCCCCCHHH Q lcl|Aclame:pro 372 AVAKKAVIWDDLNEQTGTE 390 (449) Q Consensus 372 ~~~~~~~~f~pL~~~sekE 390 (449) .|.+..++|.-- .++++. T Consensus 202 ~~~~~~~~F~~~-~~~d~~ 219 (219) T protein:vir:98 202 IKSALKVNFKQP-EKRDKN 219 (219) T ss_pred CCCccEEeecCc-ccccCC Confidence 466777888632 222232 No 225 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=94.33 E-value=0.0047 Score=33.34 Aligned_cols=311 Identities=10% Similarity=-0.000 Sum_probs=130.3 Q ss_pred CchhhHHH------HHhhhHHHHHH--HHHHHHHHHHhhc--Ccccc---cc---hhccCCcccCCHHHHHHHHHcCchh Q lcl|Aclame:pro 1 MTDKLTLA------VNHALNDARMA--RARMGLMVPTMGL--DNKRH---SA---WCEYGFPELVTYENLYSLYRRGGIA 64 (449) Q Consensus 1 ~~~~~~~~------v~~~~~~~~~~--~~~~~~~~~~~g~--~t~r~---~~---~~~~~~~~~~~~~~l~~~Y~~~~l~ 64 (449) |+.|=+-. ++.+....+.. ..+...+..+.-. -+.++ -. ++.-+|...+++.-|..+++.|... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~y~~~~~~~~~~~pp~~~~~la~~~~~~~~h 80 (350) T protein:vir:11 1 MSKRRSHRRQQPVTVQSAQEGEFIPRQGGRAEAFTFGDPMPVLDGRGILDYLECWPNGRWYEPPLSMEGLAKSVGSSVYL 80 (350) T ss_pred CCccccCCCcCccccCCcchhhhccccccceEEEEeCCceeecCcchhhHHHHHhhcCccccCCCCHHHHHHHHhhhhhh Confidence 87764311 11111100100 0011110000000 01111 11 1222344567777777777777776 Q ss_pred HHHHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCccccccc Q lcl|Aclame:pro 65 HGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPAT 143 (449) Q Consensus 65 r~iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~ 143 (449) ..++..-.....+ +++ +... .+.. .+++-+.+. .++|-|++.+.-+ .|+ T Consensus 81 ~~~l~~k~n~l~~-~~~------Pn~~--~t~~----------~f~~~v~d~----ll~Gnay~~~~rn~~G~------- 130 (350) T protein:vir:11 81 QSGLKFKRNMLAK-TFI------PHRL--LSRA----------TFEQFSLDW----LTFGSAYLEQPRSRLGT------- 130 (350) T ss_pred ccchhhhhhhhhh-ccc------CCCC--CCHH----------HHHHHHHHH----HhcCCeEEEEEEcCCCC------- Confidence 6666544433222 111 1000 0000 111112121 3688888877642 122 Q ss_pred ccCceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHH Q lcl|Aclame:pro 144 KGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYN 219 (449) Q Consensus 144 ~~~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~ 219 (449) +..|.++....+... .|. + .+|++.. .+..+.+.+..||||... ...|.|-+..+.. T Consensus 131 ----~~~L~~l~~~~vr~~---~~~---~----~~~~~~~-----~~~~~~~~~~eVihir~~~~~~~~yGls~~~~a~~ 191 (350) T protein:vir:11 131 ----RMPLQAPLAKYMRRG---TDL---E----TFYQVRS-----WKDEHEFEKGSVIQLREADINQEIYGVPEWFCALQ 191 (350) T ss_pred ----EEEEEEeCCceeEee---ecC---C----eEEEEee-----CCeEEEECcccEEEeCCCCCCCCcccccHHHHHHH Confidence 233444333332221 111 1 2455541 233467788889988643 3568888888777 Q ss_pred HHHHHHHHhhHHHHHHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc---cc-eeecC---CC Q lcl|Aclame:pro 220 AFVSLEKVEGGSGESFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN---DV-LMTTQ---GA 291 (449) Q Consensus 220 ~l~~~~~~~~~~a~l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~l~~~---~e 291 (449) .+..-..+.. ...-+|+|.... ..+. +. .....++..+++.+.+...+ |. +. ++... ++ T Consensus 192 si~l~~~a~~-~~~~~f~NGa~~~gil~------~~-----~~~ls~e~~~~l~~~~~~~~-G~~N~~~~~v~~~~g~~~ 258 (350) T protein:vir:11 192 SALLNESATL-FRRKYYNNGSHAGFILY------MT-----DAAQNEEDIDALRTALKTAK-GPGNFRNLFVYAPNGKKE 258 (350) T ss_pred HHHHHHHHHH-HHHHHHhccCCCceEEE------ec-----CCCCCHHHHHHHHHHHHHhc-CccccCceeeecCCCCcc Confidence 6643332221 222233433211 1111 00 11234555666666555432 22 22 33322 23 Q ss_pred ceEEeecccC----ChHHHHHHHHHHHHhhhcCCceeeeccCc---cccccchh-HHHHH-HHHHHHHHhhhHHHHHHHH Q lcl|Aclame:pro 292 TVTPLVTSVA----DPTATYNVNLQTAAAGVDIPTRILIGNQQ---AERSSTED-QKYFN-ARCQSRRVDLSFEIEDFCD 362 (449) Q Consensus 292 d~~~~~~~ls----gl~d~~~~~~~~iaaas~IP~t~L~Gqs~---gg~~s~eD-~~nyy-d~I~~~Qe~~~~p~~~~l~ 362 (449) .++....+.+ ..-++-....++||++.+||-. |+|..+ ++.++-+. .+.|| +.| .|+.+.+. T Consensus 259 g~~~~pl~~~~~d~qf~e~k~~~~~eIa~a~~VPp~-llGi~~~~t~~~sn~e~~~~~f~~~~L--------~P~~~~ie 329 (350) T protein:vir:11 259 GIQLIPVSEVAAKDEFGSIKNISRDDQLAGLRVYPQ-LMGVVPQNAGGFGSISDAAAVWASLEL--------APMQTRLQ 329 (350) T ss_pred ceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHH-HhcccCCCCCCcCCHHHHHHHHHHHHH--------HHHHHHHH Confidence 3444333333 2455666778899999999964 667433 33444342 34444 344 44444444 Q ss_pred HHHHHhcCCCCCCc-eEEeCCC Q lcl|Aclame:pro 363 KLIELKIIDAVAKK-AVIWDDL 383 (449) Q Consensus 363 ~l~~~~~~~~~~~~-~~~f~pL 383 (449) .+..+ ++.....| .|.-..| T Consensus 330 ~ln~~-l~~~~~~F~~~~~~~l 350 (350) T protein:vir:11 330 QVNEM-IGEEVVRFAQFDAPGL 350 (350) T ss_pred HHHhh-cCccccccCcccccCC Confidence 43322 11110011 1223333 No 226 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=94.14 E-value=0.0053 Score=33.08 Aligned_cols=317 Identities=13% Similarity=0.054 Sum_probs=139.1 Q ss_pred CchhhHHHHHhhhHHHHH---HHH---HH-HHHHHH-hhcCcccccc-h-----hccCCcccCCHHHHHHHHHcCchhHH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARM---ARA---RM-GLMVPT-MGLDNKRHSA-W-----CEYGFPELVTYENLYSLYRRGGIAHG 66 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~---~~~---~~-~~~~~~-~g~~t~r~~~-~-----~~~~~~~~~~~~~l~~~Y~~~~l~r~ 66 (449) |+.|=+ .++.....+-. ... +. .|..+. ...-+.++-. + ..-+|...+++..|..+++.|..... T Consensus 26 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~fg~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~La~~~~~~~~h~s 104 (376) T protein:vir:10 26 MSKRRS-RAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSS 104 (376) T ss_pred chhccC-CCcccchhhhhHhhhccCcceeEEEEcCCceeccCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHHhhh Confidence 666532 22222211110 000 10 011000 0001111111 1 11233457788888888888888888 Q ss_pred HHhhhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCccccccccc Q lcl|Aclame:pro 67 AVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKG 145 (449) Q Consensus 67 iVd~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~ 145 (449) +|..-+.+.++ +++ .... .+.. .+++-+.+. .++|.|++.+.-+ +|+ T Consensus 105 ~l~~k~n~l~~-~~~--Pnp~------lT~~----------~f~~~v~d~----ll~Gnay~~~~rn~~G~--------- 152 (376) T protein:vir:10 105 ALFFKANVLAS-TFR--PHRW------LSRH----------AFERWALDF----LTFGNGYLERRRNMVGG--------- 152 (376) T ss_pred hHHHHhHHHHh-ccC--CCCC------CCHH----------HHHHHHHHH----HhcCCeEEEEEECCCCC--------- Confidence 88776665444 221 0000 0000 111112222 3678888776543 221 Q ss_pred CceeeEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccC----CCCCcchhHHHHHHHH Q lcl|Aclame:pro 146 RGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD----YSEDAIGFLEPAYNAF 221 (449) Q Consensus 146 ~~l~~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~----~~~~G~s~l~~~~~~l 221 (449) +..|.++....+.+. .|+. .+|++. +.+..+.+-++-||||.. ....|.|-+..+...+ T Consensus 153 --~~~L~pl~~~~vr~~---~d~~-------~~~~~~-----~~~~~~~~~~~eViHir~~~~~~~~yGls~~~~a~~si 215 (376) T protein:vir:10 153 --TLRLEPALAKYVRRK---ADFN-------GFVYVN-----GWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSA 215 (376) T ss_pred --EEEEEEeCCcceEEE---eeCC-------eEEEEE-----cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHH Confidence 334444443333221 1211 233332 122334566777888854 3456888888777655 Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhccc---c-ceeecC---CCceE Q lcl|Aclame:pro 222 VSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGN---D-VLMTTQ---GATVT 294 (449) Q Consensus 222 ~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~l~~~---~ed~~ 294 (449) ..-..+ ......+|+|....=.+- .+. +....++..+++.+.+... +|. + .+++.. ++.++ T Consensus 216 ~l~~aa-~~f~~~~f~NGa~pggIl-----~~~-----d~~l~~e~~~~lr~~~~~~-~G~~N~~~~~vl~~~g~~~Gi~ 283 (376) T protein:vir:10 216 WLNESS-TLFRRKYYENGSHAGFIL-----YMT-----DAAQKQDDVDNMRDALKNA-KGPGNFRNVFMYAPGGKKDGIQ 283 (376) T ss_pred HHHHHH-HHHHHHHHhccCCCceEE-----Eec-----CCCCCHHHHHHHHHHHHHh-cCccccCceeEecCCCCccceE Confidence 432222 122223344432210000 000 1123455556665555543 222 2 233322 23344 Q ss_pred EeecccC----ChHHHHHHHHHHHHhhhcCCceeeeccCcc---ccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHH Q lcl|Aclame:pro 295 PLVTSVA----DPTATYNVNLQTAAAGVDIPTRILIGNQQA---ERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIE 366 (449) Q Consensus 295 ~~~~~ls----gl~d~~~~~~~~iaaas~IP~t~L~Gqs~g---g~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~ 366 (449) ....+.+ .+-++.....+.||++.+||- .|.|..+. +.++.| -.+.||.. .+.|+.+.+..+.. T Consensus 284 ~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp-~llGi~~~~t~~~sn~eq~~~~f~~~-------~L~Pl~~~ieeln~ 355 (376) T protein:vir:10 284 LIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPP-QLLGIVPSNSGGFGTPDTAARVFGRN-------EIRPLQARFAELND 355 (376) T ss_pred EEEccCCHHHHHHHHHHHHhHHHHHHHhCCCH-HHhcccCCCCCCcccHHHHHHHHHHH-------HHHHHHHHHHHHHh Confidence 4434333 245555667889999999996 67786543 334434 34455432 24455544444332 Q ss_pred HhcCCCCCCceEEeCCCCCCCHHHHH Q lcl|Aclame:pro 367 LKIIDAVAKKAVIWDDLNEQTGTEKL 392 (449) Q Consensus 367 ~~~~~~~~~~~~~f~pL~~~sekE~A 392 (449) + ++ .+ -|+|++---+.-.++| T Consensus 356 ~-L~---~~-~~~F~~~~Llr~d~ka 376 (376) T protein:vir:10 356 W-LG---EE-VVRFDDYEIPPAPVAA 376 (376) T ss_pred h-cc---cc-ccccChhHhhcccccC Confidence 2 11 12 2566654444444444 No 227 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=93.92 E-value=0.0059 Score=32.79 Aligned_cols=312 Identities=12% Similarity=0.040 Sum_probs=139.3 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHH-HHH--H--HhhcCcccccch---hccCCcccCCHHHHHHHHHcCchhHHHHhhhH Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMG-LMV--P--TMGLDNKRHSAW---CEYGFPELVTYENLYSLYRRGGIAHGAVEKLV 72 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~-~~~--~--~~g~~t~r~~~~---~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~pa 72 (449) |+.|-+ ....+..... .++.. |.. + ++...+--+... ..-+|...+++.-|..+++.|+....+|..-+ T Consensus 1 m~~~~~-~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~a~~~h~s~i~~k~ 77 (340) T protein:vir:98 1 MSKRKP-RKAVAMTASA--PQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKR 77 (340) T ss_pred CCCCCC-CccccccccC--ccceeEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHHhccccchhhhhhh Confidence 886543 1111111111 01111 110 0 111111111111 11134567888889899888887777776655 Q ss_pred HHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCceeeEE Q lcl|Aclame:pro 73 GKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVS 152 (449) Q Consensus 73 ~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~~i~ 152 (449) .+..+ +++ ....-. ..++ ++-+.+. .++|-|++.+.-+ +.. .+..|. T Consensus 78 n~l~~-~~~--Pn~~lt----~~~f------------~~~~~d~----ll~Gnay~~~~rn-~~G---------~~~~L~ 124 (340) T protein:vir:98 78 NVLAS-TYI--PHPLLS----RQDF------------SRFALDY----LVFGNAFLEQRHS-VTG---------QLIKLL 124 (340) T ss_pred hHHhh-ccC--CCCCCC----HHHH------------HHHHHHH----HhcCCeEEEEEEC-CCC---------cEEEEE Confidence 54433 221 000000 0111 1112121 3678888777542 211 133344 Q ss_pred EeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccC----CCCCcchhHHHHHHHHHHHHHHh Q lcl|Aclame:pro 153 VSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGD----YSEDAIGFLEPAYNAFVSLEKVE 228 (449) Q Consensus 153 v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~----~~~~G~s~l~~~~~~l~~~~~~~ 228 (449) ++....+... .|. + .+|++.. .+..+.+++.-|+||.+ ....|.|.+..+...+..-.. . T Consensus 125 pl~~~~vr~~---~~~---~----~~~~~~~-----~~~~~~~~~~eViHir~~~~~~~~~Gls~~~~a~~si~l~~a-a 188 (340) T protein:vir:98 125 TSPAKYTRRG---VDD---S----VFWFVEN-----FTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNES-A 188 (340) T ss_pred EeCCceEEEc---ccC---c----EEEEEec-----CCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHH-H Confidence 4433332221 111 1 3566642 22345788888999864 235688888777665533222 1 Q ss_pred hHHHHHHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcccc---cee-ecC---CCceEEeeccc Q lcl|Aclame:pro 229 GGSGESFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND---VLM-TTQ---GATVTPLVTSV 300 (449) Q Consensus 229 ~~~a~l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l-~~~---~ed~~~~~~~l 300 (449) .....-+|+|.... ..+.+ . .....++..+++.+.+... +|.+ .++ ... ++.++....+. T Consensus 189 ~~~~~~~f~NGa~pg~il~~------~-----~~~ls~e~~~~lk~~~~~~-~G~~n~~~~~vl~~~g~~~g~~~~pls~ 256 (340) T protein:vir:98 189 TLFRRKYYQNGAHAGYIMYV------T-----DPAQSATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSE 256 (340) T ss_pred HHHHHHHHhccCCCceEEEe------c-----CCCCCHHHHHHHHHHHHHh-cCccccCceeEecCCCCccceEEEEcCC Confidence 22222334443211 11110 0 1123455556666555543 3322 233 322 23344444433 Q ss_pred C----ChHHHHHHHHHHHHhhhcCCceeeeccCc---cccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 301 A----DPTATYNVNLQTAAAGVDIPTRILIGNQQ---AERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA 372 (449) Q Consensus 301 s----gl~d~~~~~~~~iaaas~IP~t~L~Gqs~---gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~ 372 (449) + .+-++-....+.||++.+||-. |.|-.+ ++.+.-+ -.+.|+.. .+.|+.+.+..+..+ ++. T Consensus 257 ~~~d~qf~e~k~~~~~eIa~a~~VPp~-llGi~~~~t~~~sn~e~~~~~f~~~-------~l~Pl~~~iee~n~~-L~~- 326 (340) T protein:vir:98 257 VATKDDFFNIKKASAADLMDAHRVPFQ-LMGGKPENIGSLGDVEKVAKVFVRN-------ELSPLQDRFREVNDW-LGM- 326 (340) T ss_pred ChhHHHHHHHHHhhHHHHHHHhCCCHH-HhcccCCCCCccccHHHHHHHHHHH-------HHHHHHHHHHHHHhc-ccc- Confidence 3 2456777788899999999975 667533 3334434 34455433 355666655543322 111 Q ss_pred CCCceEEeCCCCCCCHH Q lcl|Aclame:pro 373 VAKKAVIWDDLNEQTGT 389 (449) Q Consensus 373 ~~~~~~~f~pL~~~sek 389 (449) + -|+|++-.-++.. T Consensus 327 --e-~~rF~~~~l~~~d 340 (340) T protein:vir:98 327 --E-VIRFKEYTLDNPE 340 (340) T ss_pred --c-ccccCccccccCC Confidence 1 1456544433333 No 228 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=93.27 E-value=0.0082 Score=32.03 Aligned_cols=318 Identities=10% Similarity=0.035 Sum_probs=134.7 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHH-HH--HH--HhhcCcccccchh--cc--CCcccCCHHHHHHHHHcCchhHHHHhhh Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMG-LM--VP--TMGLDNKRHSAWC--EY--GFPELVTYENLYSLYRRGGIAHGAVEKL 71 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~-~~--~~--~~g~~t~r~~~~~--~~--~~~~~~~~~~l~~~Y~~~~l~r~iVd~p 71 (449) |+.|.+-......+... ..+.+ |. .+ ++....--+..++ .. +|...+++..|..+++.++....++..- T Consensus 1 m~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~~~~~h~~~i~~k 78 (346) T protein:vir:10 1 MKKQLRKNLTQNDRLQP--QAQTEIFSFGDPIPVLDRADILNYLECSAMYEKWYNPPMSFDGLAKSLRSSTHHESAIITK 78 (346) T ss_pred CCcccCCCCCccccccc--ccCeEEEecCCcceecCchhHHHHHHHhhcCCceEecCCCHHHHHHHHHhhhhcchhhhhh Confidence 99887521111110000 00111 11 00 1111111111111 11 2345667777888887777655555443 Q ss_pred HHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC-CCcccccccccCceee Q lcl|Aclame:pro 72 VGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPATKGRGLQK 150 (449) Q Consensus 72 a~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d-~~~~~~Pl~~~~~l~~ 150 (449) .....+ .++.-... .+. ..+++.+.+. -++|.|++.+.-+. |+ +.. T Consensus 79 ~n~l~~-l~~~Pn~~-------~t~----------~~f~~~~~d~----ll~Gnay~~i~r~~~G~-----------~~~ 125 (346) T protein:vir:10 79 ANILLS-TCEVDSRY-------LSR----------RDLSSFVKDY----LVFGNAYFEVVRNRLGQ-----------VQR 125 (346) T ss_pred hhhHHH-HHhCCCCC-------CCH----------HHHHHHHHHH----HhcCCeEEEEEEcCCCc-----------EEE Confidence 332211 00000000 000 0122222221 36888887775421 22 233 Q ss_pred EEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHHH Q lcl|Aclame:pro 151 VSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEK 226 (449) Q Consensus 151 i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~~ 226 (449) |.++....+.+.. +.| .| .|.+.. ..+..+.+-++.|||+... ...|.|.+..+...+..-.. T Consensus 126 L~pl~~~~v~~~~-~~~----~~----~~~~~~----~~g~~~~~~~~dIih~r~~~~~~~~~G~~~~~~a~~si~l~~~ 192 (346) T protein:vir:10 126 IESPLAKYVRKGL-EAG----QF----YYVPQR----FDHQEHEFAKGSIYHLLEPDINQDIYGLPQYLSALQSAWLNES 192 (346) T ss_pred EEEecCCceEEEE-cCC----eE----EEEEEc----cCCeEEEEecccEEEecCCCCCCCeeeccHHHHHHHHHHHHHH Confidence 4444444333211 111 11 122211 1123456677778888643 34688888777766544333 Q ss_pred HhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcc--ccc-eeecC---CCceEEeeccc Q lcl|Aclame:pro 227 VEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRG--NDV-LMTTQ---GATVTPLVTSV 300 (449) Q Consensus 227 ~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~~~---~ed~~~~~~~l 300 (449) +... ..-+|++....=.+- .+. .....++..+++.+.+...... .+. +++.. .+.++....+. T Consensus 193 a~~~-~~~~~~NG~~~~~il-----~~~-----d~~l~~e~~~~i~~~~~~~~g~~n~~~~~vl~~~~~~~gi~~~pis~ 261 (346) T protein:vir:10 193 ATLF-RRKYFLNGAHAGFVF-----YMS-----DASQKQEDVENIRQQLKQSKGVGNFKNLFVHAPNGKKDGIQIIPIAD 261 (346) T ss_pred HHHH-HHHHHhccCCCceEE-----EeC-----CCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceeEEecCC Confidence 2222 222334332211110 010 1123455555565555443211 122 33322 23344444444 Q ss_pred CC----hHHHHHHHHHHHHhhhcCCceeeeccCc---cccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 301 AD----PTATYNVNLQTAAAGVDIPTRILIGNQQ---AERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA 372 (449) Q Consensus 301 sg----l~d~~~~~~~~iaaas~IP~t~L~Gqs~---gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~ 372 (449) +. +-++.....++||++.+||-. |.|..+ ++.++.+ -.+.|+. +.+.|+.+.+..+... ++ T Consensus 262 ~~~d~qf~e~k~~~~~~I~~af~VPp~-llG~~~~~~~~~s~~e~~~~~f~~-------~~l~P~~~~iee~n~~-L~-- 330 (346) T protein:vir:10 262 VSAKDEFFNIKNVSRDDVLAAHRVPPQ-LMGIIPNNTGGFGNVADAAEVFFI-------TEIEPLQERLKEFNQW-LG-- 330 (346) T ss_pred ChhHHHHHHHHHHhHHHHHHHhCCCHH-HhcccCCCCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHHhh-cc-- Confidence 33 334456678899999999986 557543 3444444 3455553 2345555555443322 11 Q ss_pred CCCceEEeCCCCCCCHHH Q lcl|Aclame:pro 373 VAKKAVIWDDLNEQTGTE 390 (449) Q Consensus 373 ~~~~~~~f~pL~~~sekE 390 (449) .+ .|+|+|=--+..+| T Consensus 331 -~e-~i~F~~~~ll~~~~ 346 (346) T protein:vir:10 331 -QE-VIKFKPSKLLQRTQ 346 (346) T ss_pred -cc-eeeechhhhcccCC Confidence 12 35666544444444 No 229 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=91.10 E-value=0.017 Score=30.22 Aligned_cols=314 Identities=13% Similarity=0.026 Sum_probs=136.6 Q ss_pred CchhhHHHHHhhhHHHHHHHH---HHHHHHHHhh--cCccc---ccch---hccCCcccCCHHHHHHHHHcCchhHHHHh Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARA---RMGLMVPTMG--LDNKR---HSAW---CEYGFPELVTYENLYSLYRRGGIAHGAVE 69 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~g--~~t~r---~~~~---~~~~~~~~~~~~~l~~~Y~~~~l~r~iVd 69 (449) |+.|-+. +.+.+ ...... +...+..+.- .-+.+ +... ...+|...+++.-|..+++.|.....+|. T Consensus 1 ~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~s~i~ 77 (344) T protein:vir:56 1 MSKKKGK--TPQPA-AKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIY 77 (344) T ss_pred CCCCCCC--CCchh-hHHhhcCCCceEEEEcCCceeecCcchhhhHHHhhhcCccccCCCCHHHHHHHHhhhhhhCccce Confidence 9988762 21111 111111 1111111000 00111 1111 22345567888888888888877766666 Q ss_pred hhHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcccccccccCcee Q lcl|Aclame:pro 70 KLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQ 149 (449) Q Consensus 70 ~pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~~~Pl~~~~~l~ 149 (449) .-+....+ +++ +..---..++++ + +.+. .++|-|++.+.-+ +.. .+. T Consensus 78 ~k~n~l~~-~~~------Pnp~~t~~~f~~----~--------~~d~----ll~Gnay~~~~rn-~~G---------~~~ 124 (344) T protein:vir:56 78 VKRNILAS-TFI------PHPWLSQQDFSR----F--------VLDF----LVFGNAFLEKRYS-TTG---------KVI 124 (344) T ss_pred ehhhhHHh-hcC------CCCCCCHHHHHH----H--------HHHH----HhcCCeEEEEEEC-CCC---------cEE Confidence 55443322 211 100000011111 1 1111 3578888877542 111 233 Q ss_pred eEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHH Q lcl|Aclame:pro 150 KVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLE 225 (449) Q Consensus 150 ~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~ 225 (449) .|.++....+... .|. + .+|++.. .+..+.+.+..|||+.+. ...|.|-+..+.+.+..-. T Consensus 125 ~L~pl~~~~v~~~---~~~---~----~~~~~~~-----~g~~~~~~~~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~ 189 (344) T protein:vir:56 125 RLETSPAKYTRRG---VEE---D----VYWWVPS-----FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNE 189 (344) T ss_pred EEEEeCCceeEEe---ecC---C----EEEEEec-----CCeEEEEcCccEEEECCCCCCCCcccccHHHHHHHHHHHHH Confidence 4444433333221 111 1 2455531 233456788889988643 3568888887776654322 Q ss_pred HHhhHHHHHHHHHHhhh-hhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHh-ccc-cceeec----CCCceEEeec Q lcl|Aclame:pro 226 KVEGGSGESFLKNAARQ-LNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEIN-RGN-DVLMTT----QGATVTPLVT 298 (449) Q Consensus 226 ~~~~~~a~l~~~~~~~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~l~~----~~ed~~~~~~ 298 (449) .+ .....-+|+|.... ..+.+ . .....++..+++.+.+.... .+. ..+++. +++.++.... T Consensus 190 ~a-~~~~~~~f~NGa~pg~Il~~------~-----d~~ls~e~~~~lk~~~~~~~g~~~~r~l~l~~p~g~~~G~~~~pi 257 (344) T protein:vir:56 190 SA-TLFRRKYYENGAHAGYIMYV------T-----DAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPL 257 (344) T ss_pred HH-HHHHHHHHhccCCCceEEEe------c-----CCCCCHHHHHHHHHHHHHhcCCCCccceEEecCCCCccceeEEEc Confidence 22 22223334432221 11111 0 11233455555555554332 111 223332 2333444444 Q ss_pred ccCC----hHHHHHHHHHHHHhhhcCCceeeeccCc---cccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 299 SVAD----PTATYNVNLQTAAAGVDIPTRILIGNQQ---AERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKII 370 (449) Q Consensus 299 ~lsg----l~d~~~~~~~~iaaas~IP~t~L~Gqs~---gg~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~ 370 (449) +.+. +-++-....+.||++.+||-. |.|..+ ++.+.-+ -.+.|+.. .+.|+.+.+..+..+... T Consensus 258 s~~~~d~qf~e~k~~s~~eIa~afrVPp~-llGi~~~~t~~~~n~eq~~~~f~~~-------tL~Pl~~~ie~~n~~l~~ 329 (344) T protein:vir:56 258 SEVATKDDFFNIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVRN-------ELIPLQDRIREINGWIGQ 329 (344) T ss_pred CCChHHHHHHHHHHhhHHHHHHHhCCCHH-HhccCCCCCCccccHHHHHHHHHHH-------HHHHHHHHHHHHHhhhcc Confidence 4333 456667778899999999985 667533 3333334 34444432 335555554443332211 Q ss_pred CCCCCceEEeCCCCCCCHHHHH Q lcl|Aclame:pro 371 DAVAKKAVIWDDLNEQTGTEKL 392 (449) Q Consensus 371 ~~~~~~~~~f~pL~~~sekE~A 392 (449) + .+.|++---..+. | T Consensus 330 ~-----~~~F~~y~l~~~~--~ 344 (344) T protein:vir:56 330 E-----VIRFKNYSLDTDN--G 344 (344) T ss_pred c-----cccCCCccccccC--C Confidence 1 1234333222211 1 No 230 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=83.35 E-value=0.069 Score=26.94 Aligned_cols=306 Identities=9% Similarity=-0.011 Sum_probs=136.7 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHH--HHhhcCccc---cc---chh--ccCCcccCCHHHHHHHHHcCchhHHHHhh Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMV--PTMGLDNKR---HS---AWC--EYGFPELVTYENLYSLYRRGGIAHGAVEK 70 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~g~~t~r---~~---~~~--~~~~~~~~~~~~l~~~Y~~~~l~r~iVd~ 70 (449) |+.+..- +.+..+.. ....|+- +..=+ +.+ +- .+. .-+|...++...|..+++.++-...++.. T Consensus 1 m~~~~~~--~~~~~~~~---~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~pP~~~~~La~l~~~~~~h~~~L~~ 74 (337) T protein:vir:78 1 MTKRQQQ--PAQAAASS---PRPSVVFSMPEAID-PTAWMTDYTGVFYNPYGEYYQPPIDRKGLAKVARANAHHGAILMA 74 (337) T ss_pred CCCcccC--cccccccC---ceeEEEecCccccc-CcchhHhhhhhhhccCcceecCCCCHHHHHHHhhcchhhhhHHHh Confidence 8876652 11111000 0111211 00000 111 11 111 11345678888899999998887777775 Q ss_pred hHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEec-CCCcccccccccCcee Q lcl|Aclame:pro 71 LVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKGRGLQ 149 (449) Q Consensus 71 pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~-d~~~~~~Pl~~~~~l~ 149 (449) -+.. +..++. +. ...+++ + +.+. .++|-|++.+.-+ .|+ +. T Consensus 75 k~N~-~~~~f~-~~---------~~~~~~----~--------~~d~----ll~GNay~~~~rn~~G~-----------~~ 116 (337) T protein:vir:78 75 RRNM-VAGRFT-NQ---------RATITA----F--------VHNY----LQFGDGGLLKLRNSFGQ-----------VV 116 (337) T ss_pred hhcc-ccccCc-Cc---------HHHHHH----H--------HHHH----HhhCCeEEEEEECCCCc-----------EE Confidence 5542 222331 11 001111 1 1111 3578888777542 222 23 Q ss_pred eEEEeccccCChhhhhccccccccCCceeEEeeecccCCCccceEEccceeeeccCC----CCCcchhHHHHHHHHHHHH Q lcl|Aclame:pro 150 KVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLE 225 (449) Q Consensus 150 ~i~v~~~~~i~~~~~~~Dp~s~~yg~P~~y~i~~~~~~~~~~~~~IH~SRli~~~~~----~~~G~s~l~~~~~~l~~~~ 225 (449) .|.++....+... .| | .+|.+.. .+..+.+-+..|+|+.+. ...|.|-+..+...+..-. T Consensus 117 ~L~pl~~~~v~~~---~d------~--~~~~~~~-----~~~~~~~~~~eIiHik~~~~~~~~~Gls~~~~a~~si~l~~ 180 (337) T protein:vir:78 117 GLHPLSSVYLRRR---ED------G--CFVYLQQ-----GKPNLIYRPDDVIWLAQYDPEQQVYGMPDYLGGLQSALLNQ 180 (337) T ss_pred EEEEeCCceeEee---eC------C--eEEEEEc-----CCceEEECCccEEEECCCCCCCCcccccHHHHHHHHHHHHH Confidence 3334332222211 12 1 1233321 123455667778887643 3458888877766654322 Q ss_pred HHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhh-ccChHHHHHHHHHHHHHHhc--cccce-eec---CCCceEEeec Q lcl|Aclame:pro 226 KVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLY-GVSIDELQDKFNEVAGEINR--GNDVL-MTT---QGATVTPLVT 298 (449) Q Consensus 226 ~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~-l~~---~~ed~~~~~~ 298 (449) .+. ....-+|+|....= .+.... ....++..+++.+.+..... +.+.+ +.. +++.++.... T Consensus 181 aa~-~~~~~~f~NGa~p~-----------~il~~~~~~l~~e~~~~lk~~~~~~~G~~n~~~~~v~~~~g~~~Gi~~~pi 248 (337) T protein:vir:78 181 DAT-LFRRRYFLNGAHMG-----------FIFYATDPNMDDDTEEEMKEMIANSKGVGNFRSMFVNIPDGKPDGIKLIPV 248 (337) T ss_pred HHH-HHHHHHHhccCCCc-----------eeEEcCCCCCCHHHHHHHHHHHHHhcCcccccceEEEcCCCCccceeEEEc Confidence 222 12222344432211 111111 12345555666655554321 11223 332 2333444444 Q ss_pred ccCC----hHHHHHHHHHHHHhhhcCCceeeeccCcc----ccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc Q lcl|Aclame:pro 299 SVAD----PTATYNVNLQTAAAGVDIPTRILIGNQQA----ERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKI 369 (449) Q Consensus 299 ~lsg----l~d~~~~~~~~iaaas~IP~t~L~Gqs~g----g~~s~e-D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~ 369 (449) +.+. +-++-....+.||++.+||- .|.|..+. |.++-| -.+.|+. +.+.|+.+.+...+-..+ T Consensus 249 s~~~~d~qfle~k~~s~~eIa~a~~VPp-~llGi~~~~~~~~~~n~e~~~~~f~~-------~~L~P~~~~ie~~~n~~l 320 (337) T protein:vir:78 249 GDIATKDEFAAIKGITAQDVLTAHRYPP-ALAGIIPTNGGGGLGDPEKYDATYAR-------NEVLPLCELVQDAINSAG 320 (337) T ss_pred CCChhHHHHHHHHHHhHHHHHHHhCCCH-HHcccccCCCcCccccHHHHHHHHHH-------HHHHHHHHHHHHHHhhhc Confidence 4333 34555567789999999997 45565433 333223 3344543 345666666665554433 Q ss_pred CCCCCCceEEeCCCCCC Q lcl|Aclame:pro 370 IDAVAKKAVIWDDLNEQ 386 (449) Q Consensus 370 ~~~~~~~~~~f~pL~~~ 386 (449) .++..-+.|+|++=-.+ T Consensus 321 l~~~~~~~f~~~~~~~~ 337 (337) T protein:vir:78 321 LPRALWVTFRETIGAAV 337 (337) T ss_pred CChhhceeccccccccC Confidence 32222245555544444 No 231 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=76.94 E-value=0.13 Score=25.44 Aligned_cols=406 Identities=11% Similarity=0.011 Sum_probs=145.7 Q ss_pred Cchh-hHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcc--cCCHHHHHHHHH----cCchhHHHHhhhHH Q lcl|Aclame:pro 1 MTDK-LTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPE--LVTYENLYSLYR----RGGIAHGAVEKLVG 73 (449) Q Consensus 1 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~--~~~~~~l~~~Y~----~~~l~r~iVd~pa~ 73 (449) |++| -.+ |+............-.++--..++... =+.+...+.|+ .-+...+ ..|. -..+.+++|+..+- T Consensus 1 m~~~~~~~-v~~~h~~y~a~~~~W~~ird~~~G~~~-~r~~g~~YLPk~~~E~~~~Y-~~rl~rA~~~n~~~~tl~~l~G 77 (513) T protein:vir:97 1 MADKDPKS-PATTSGAYDQMLPRWHVIETLLGGTEA-MREAGETYLPRHQEETDKGY-QERLASAVLLNMVEQTLDTLSG 77 (513) T ss_pred CCCCCCCC-CCcCCHHHHHHHHHHHHHHHHhcChHH-HHhhcccCCCCCCCCCHHHH-HHHHhcccCCChHHHHHHHHhh Confidence 8888 342 444333333333333343333332211 12222333332 2222222 2222 24577889999999 Q ss_pred HHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecCCCcc--ccccccc----Cc Q lcl|Aclame:pro 74 KCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDW--NLPATKG----RG 147 (449) Q Consensus 74 d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~--~~Pl~~~----~~ 147 (449) -.+|+.+++.....+ . ...-+......- =..+..-+..+++....||.+++++....-... ..|+..- .+ T Consensus 78 ~vf~k~p~~~~~~p~-~--~~~~l~~d~D~~-G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~~~~T~Ade~~~~ 153 (513) T protein:vir:97 78 KPFSEPIKLNEDVPK-A--IEETILPDVDLQ-GNNLDVFARQWFREGMAKALCHVLIDMPRPAPREDGQPRTLADDRREG 153 (513) T ss_pred hhhhcCcccCcCchH-H--HHHHHhhccCCC-CCCHHHHHHHHHHHHHhcCeEEEEEecCCCCCccchhHHhHHHHHhhc Confidence 999999876422211 1 111111111000 012444455556666678999999876311110 1111110 01 Q ss_pred e-eeEEEeccccC--------------Ch---hh--hhcccccccc------CCceeEEeeecccCCC--ccceEEccce Q lcl|Aclame:pro 148 L-QKVSVSWAGSL--------------KV---AE--WDTGINSKTY------GQPKLWKYTERLPNGS--SRRVDIHPDR 199 (449) Q Consensus 148 l-~~i~v~~~~~i--------------~~---~~--~~~Dp~s~~y------g~P~~y~i~~~~~~~~--~~~~~IH~SR 199 (449) + -+|..+.+.+| +- .+ ...|...... ..|-.|+|-....++. ...+.+|.+. T Consensus 154 ~rPy~~~~~~e~IinW~~~~v~G~~~L~~v~l~E~~~~~Dgf~~~~~~q~rvL~~g~~~v~r~~~~~~~~~~e~~~~~~g 233 (513) T protein:vir:97 154 LRPYWVMIKPECLLFARSEVINGVEVLQHVRIIEHYMEQDGFAEVCKRRIRVLEPGLVQLWEPVKKSNAQKEEWALADEW 233 (513) T ss_pred cCceEEEecHhhhcCcceeccCcceeeeeEEEEEEEeecCCCcceEEEEEEEEeCceEEEEEeecCCCccccceEEecCC Confidence 1 11111111110 00 00 0112211110 0122233321111111 1112333322 Q ss_pred -----eeecc------CCCCCcc-hhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhhccChHHH Q lcl|Aclame:pro 200 -----VFILG------DYSEDAI-GFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDEL 267 (449) Q Consensus 200 -----li~~~------~~~~~G~-s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 267 (449) .|.|. .....|. |++..++=.+..|.... .--++++..+..++.+. .+.. ...+ T Consensus 234 ~~~l~~IP~v~~~~~~~~~~~~~pPLl~LA~ln~~hy~~~S-d~~~il~~~~~P~l~~~--------G~~~---~~~~-- 299 (513) T protein:vir:97 234 ATGLNYVPLVTFYADRQGFMMGKPPLLDLAHLNVAHWQSAS-DQRHILTVSRFPILACS--------GASG---EDSD-- 299 (513) T ss_pred CCcCCceeEEEEecCCCCCCCCccchHHHHHHHHHHHhhhh-hHHHHHHhcccceeeee--------cCCc---CCCC-- Confidence 12221 1112233 34444444444433221 11122222222222221 0000 0000 Q ss_pred HHHHHHHHHHHhccccceeec--CCCceEEeecccCChHH---HHHHHHHHHHhhhcCCceeeeccCccccccch---hH Q lcl|Aclame:pro 268 QDKFNEVAGEINRGNDVLMTT--QGATVTPLVTSVADPTA---TYNVNLQTAAAGVDIPTRILIGNQQAERSSTE---DQ 339 (449) Q Consensus 268 ~~~~~~~~~~~~~~~~~~l~~--~~ed~~~~~~~lsgl~d---~~~~~~~~iaaas~IP~t~L~Gqs~gg~~s~e---D~ 339 (449) .+.-|-+.++.. ++.++..++.+-+++.. -+....+++..+.- +|+..+++.-++++ |. T Consensus 300 ---------~i~iG~~~~~~lpe~~~~~~yie~~g~~i~~~~~~l~~le~qm~~~Ga----~ll~~~~~~~Ta~a~~~~~ 366 (513) T protein:vir:97 300 ---------PVVVGPNKVLYNPDPAGRFYYVEHTGQAIAAGRTDLKDLEEQMAGYGA----EFLKRKTGGQTATARALDS 366 (513) T ss_pred ---------ceEeeccccccCCCCCCcceeeccCchhHHHHHHHHHHHHHHHHHHHH----HhhccCCccccHHHHHHHH Confidence 011133333332 24567777777667643 44444455543332 23333444333333 34 Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCHHHH Q lcl|Aclame:pro 340 KYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEI 419 (449) Q Consensus 340 ~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~~~~~~~~e~ 419 (449) ..=+..++++..++-..+...+..+..+ .+..+++..|+.++=+.....+.+++ ++...++++| .|+.+.+ T Consensus 367 ~~~~S~L~~~a~~le~al~~~l~~~a~w-lg~~~~~~~v~in~dF~~~~~~~~~~-----~al~~a~~~G---~is~~t~ 437 (513) T protein:vir:97 367 AEATSDLSAMTGLFEDALAQALDITADW-LRLGPNGGTVELVKDYDLEEMDAPGL-----QALQVAREKR---DISRKTY 437 (513) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCccEEEeccccCcccCCHHHH-----HHHHHHHhCC---CCCHHHH Confidence 4445555555555444444444433333 23335567777777555443322222 3333444454 3333222 Q ss_pred ----HHHhcCCCCCC----------------------------CCCCCCCcch--hhcccccCC Q lcl|Aclame:pro 420 ----RTAAGYDNDDE----------------------------EPLGEEDGDE--EDKATDSAA 449 (449) Q Consensus 420 ----r~~~~~~~~~~----------------------------~~~~~~~~~e--e~~~~~~~a 449 (449) |...-+.+..+ .+.+..+.++ ++.-++.+- T Consensus 438 ~~~L~r~gvl~~d~d~~~~~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (513) T protein:vir:97 438 LNGLRLRGVLPEDFDEDEDWEELMEEISEAMGRAGLDLDPAQKNPPEGGEGEGEGEGEGGEGGE 501 (513) T ss_pred HHHHHhccCCCccCCHHHHHHHHHHhhhhccCCCCccccccCCCCCCCCCCCCCCCCCCCCCCC Confidence 22111111100 0000000000 000001000 No 232 >protein:vir:101418 Length: 569 # NCBI annotation: Prt # Family: family:all:9458 # MgeID: mge:1512 # MgeName: P1 # Cross-refs: genbank:acc:YP_006480;genbank:gi:46401636;genbank:GeneID:2777482 Probab=74.58 E-value=0.16 Score=25.00 Aligned_cols=422 Identities=12% Similarity=0.074 Sum_probs=170.0 Q ss_pred Cchh-hHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccCCHHHHHHHHHc---CchhHHHHhhhHHHHh Q lcl|Aclame:pro 1 MTDK-LTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRR---GGIAHGAVEKLVGKCW 76 (449) Q Consensus 1 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~~~~~l~~~Y~~---~~l~r~iVd~pa~d~~ 76 (449) |+-. +-+.--.--...+++...+.++-+..-.+.. .-.| .+.+|++.+|.. .+.+.....+-+.-++ T Consensus 45 ~~g~p~~~~~~~~~~~~~~t~~~D~~~~g~~~~~~~-------~~~p--r~R~qiY~~~eeM~~~p~Ia~AlniHVtaAL 115 (569) T protein:vir:10 45 RAGAPVQLSGFLGGKPGDSGMAGDGLVDGSRFIFDE-------VQLP--EDRLQRYPLLEEMAVYSTIATALNIHITHAL 115 (569) T ss_pred ecCcchhhhhhhccCccccchhhhhHHHHHHHHhhh-------ccCc--hhHHHHHHHHHHHhcCchhhhhhhhhhheee Confidence 2221 0000000112223333444444332222211 1112 456666665543 3333333333222221 Q ss_pred ------cCCcEEecC--CChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccccEEEEEEecCCCcc--------c Q lcl|Aclame:pro 77 ------QTNPEIIEG--DDADDSEDETSWEKKSKQ-VFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDW--------N 139 (449) Q Consensus 77 ------r~~~~i~~~--~~~~~~~~~~~~e~~~~~-l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d~~~~--------~ 139 (449) =.-+.|+-. .+..+.+...++.+++.. +.. -+.+.+-...+|.-.||.|+.=|..+.++.. + T Consensus 116 ggde~TGd~vfI~p~~~~~~a~~daakai~~el~~dl~~-~iNr~~~~lA~~~~aFGdsYaRiY~~~~~GV~dl~~s~yt 194 (569) T protein:vir:10 116 SFDKKTGQTFSIVPVHNGNDSDYDAAQALCGELMNDIGR-TINKEVAGWAFIMSVFGVAYVRPYAKEGIGITSFECSYYT 194 (569) T ss_pred cccccccceEEEEeecCCCCCcchHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHhhhhhheeeeccCCceeEEEEecccc Confidence 111223111 111122222244444433 221 2344455556677788999988888655432 2 Q ss_pred -----ccccccCceeeEEEeccccCChhhhhccccc-cccCCceeEEeeecccCCCccceEEcccee---eeccC---C- Q lcl|Aclame:pro 140 -----LPATKGRGLQKVSVSWAGSLKVAEWDTGINS-KTYGQPKLWKYTERLPNGSSRRVDIHPDRV---FILGD---Y- 206 (449) Q Consensus 140 -----~Pl~~~~~l~~i~v~~~~~i~~~~~~~Dp~s-~~yg~P~~y~i~~~~~~~~~~~~~IH~SRl---i~~~~---~- 206 (449) +|...+.....+........+-..--.+|-+ -.+-.|..=.+. +-..||.=.. +.-.. . T Consensus 195 ~PsfIqpFE~g~~tvGF~~~~~~~~~~ti~~l~p~qm~rmKmPrm~~i~--------q~~~v~~g~~~~~L~~d~~~~~P 266 (569) T protein:vir:10 195 LPSFIKEFEVSGNLAGFSGDYLKDASGKMVFADPWAIIPMKIPYWRPKS--------NLMPVHTGHKAYSLLDNPEERTP 266 (569) T ss_pred cccccchhhhcCceEEeecccCCccccceeeechhhhhhhcccceeecc--------ccchhhhhhhheeeccccccccc Confidence 2344333333333222111100000001000 112223211110 0011221111 11110 0 Q ss_pred ---CCCcchhHHHHHHHHHHHHHHhhHHH-HHHHHH---HhhhhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHH-HH Q lcl|Aclame:pro 207 ---SEDAIGFLEPAYNAFVSLEKVEGGSG-ESFLKN---AARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAG-EI 278 (449) Q Consensus 207 ---~~~G~s~l~~~~~~l~~~~~~~~~~a-~l~~~~---~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~ 278 (449) .--|-|+|+.+|+-..++..+..+.- +-+... ..-+++++-.....-.+... ......++-...+. +. T Consensus 267 i~psn~GgSFL~~ae~pf~~l~~Al~sL~~qri~dSv~~~~Itlnm~gM~p~qr~~y~r----~lt~~LKr~~d~ie~a~ 342 (569) T protein:vir:10 267 IETQNYGTSLLEYAYEPYMNLRSAIRSLKATRFNASKIDRIIGLAMNSLDPVKAADYSR----TITQTLKRAADLMERRA 342 (569) T ss_pred ccchhhhhHHHHHHHhHHHHHHHHHHhccchhhHHHHHhHHhhccccCCCHHHHhHHHH----HHHHHHHHHHHHHHHHh Confidence 12388999999998887777766521 111110 01112222111110001000 11122222222222 22 Q ss_pred hccccc------ee--ecCCC-----ceEEeecccCChHHHHHHHHHHHHhhhcCCceeeec---cCccccccchhHHHH Q lcl|Aclame:pro 279 NRGNDV------LM--TTQGA-----TVTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIG---NQQAERSSTEDQKYF 342 (449) Q Consensus 279 ~~~~~~------~l--~~~~e-----d~~~~~~~lsgl~d~~~~~~~~iaaas~IP~t~L~G---qs~gg~~s~eD~~ny 342 (449) ..+..+ ++ .+++- |..+...+..|++|++ ....++||+.||-.|. +| +=+||+.-+|=. T Consensus 343 ~gg~~~~~~~~H~LPv~gekq~~~tvDt~~~~A~~~gIEdvM-~~~R~LagaLGlD~SM-lGwAD~LsGGLGeGG~f--- 417 (569) T protein:vir:10 343 RGANNMPTVTNTLLPIMGDGKGQMTIDTQTIQADINGIEDIL-TYMRQLAAALGLDYTL-LGWADQMSGGLGEGGFL--- 417 (569) T ss_pred ccCccccccceeeeeeecCccccccccccccccCcccHHHHH-HHHHHHHhhhccchhH-hhHHHHhcccccccHHH--- Confidence 222211 11 12211 3445555667888876 5567899999999864 46 345777665543 Q ss_pred HHHHHHHHH-hhhH-HHHHHHHHHHHH----hcCC--CCC--CceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC-- Q lcl|Aclame:pro 343 NARCQSRRV-DLSF-EIEDFCDKLIEL----KIID--AVA--KKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGD-- 410 (449) Q Consensus 343 yd~I~~~Qe-~~~~-p~~~~l~~l~~~----~~~~--~~~--~~~~~f~pL~~~sekE~Aei~~~~A~a~~~~~~~g~-- 410 (449) .-.+.+.|. ..+| .+.+++.+++-. +.++ +|. -|.|+|++-..-=+.|..+....++.++.+.+|.-. T Consensus 418 rtSaQaa~RS~~iRqa~~e~in~iidiH~~fKYgevf~~~drP~~V~F~s~~tAl~~E~~~n~~~raN~a~i~~Q~la~l 497 (569) T protein:vir:10 418 RTAIQAAMRASWIQQGVEEFIQRAIDIHLAFKYGKVYPEGDRPYKIEFHSVNTALQQEHNDNRDSQANYATIVTQILDAV 497 (569) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccCCCCcceEEEeccchHHHHHHHHhHHHHHHHHHHHHHHHHHHh Confidence 344555554 3444 366777766533 3333 233 399999999988888888888888888777665421 Q ss_pred --cccc--CHHHHH----HHhcCCCCCCC----CCCCCCcchh---hcccccCC Q lcl|Aclame:pro 411 --NPAF--SREEIR----TAAGYDNDDEE----PLGEEDGDEE---DKATDSAA 449 (449) Q Consensus 411 --~~~~--~~~e~r----~~~~~~~~~~~----~~~~~~~~ee---~~~~~~~a 449 (449) .+++ +.+-.| +..+++..-.+ ....-..||+ +.-..+.- T Consensus 498 ~e~n~Lg~de~~m~y~l~d~~~~De~~~e~l~ae~~akp~DEe~~~~~~~~~~~ 551 (569) T protein:vir:10 498 SNNSVLANSDAFKRYLFSDVLEIDEKISEALVNELKAKSEDDDHLMDSIIKTPP 551 (569) T ss_pred hhcccccccHHHHHHHHHHHhhcchhHHHHHHhhcCCCcchhHHHHHHHhcCCh Confidence 0111 222222 22222221100 0000011111 00000000 No 233 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=22.02 E-value=2.5 Score=18.39 Aligned_cols=396 Identities=14% Similarity=0.060 Sum_probs=140.1 Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHHHHHHhhcCcccccchhccCCcccC----CH--HHHHHHHHc----CchhHHHHhh Q lcl|Aclame:pro 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELV----TY--ENLYSLYRR----GGIAHGAVEK 70 (449) Q Consensus 1 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~t~r~~~~~~~~~~~~~----~~--~~l~~~Y~~----~~l~r~iVd~ 70 (449) |.+ |............+-.++--..+ |+..=+.....+.|+.- +. .+.++.|.. -.+.+++|+. T Consensus 1 m~~-----V~~~hp~y~~~~~~W~~ird~~~-G~~~~r~~g~~YLP~~~~e~~~~e~~~~Y~~rl~rA~~~n~~~~t~~~ 74 (501) T protein:vir:95 1 MPN-----VSFIRPELGKLLPLYYLIRDAIA-GEPTVKGARTTYLPMPNAEDQSKENKARYEAYLKRAVFYNVARRTLFG 74 (501) T ss_pred CCC-----CCCCCHHHHHHHHHHHHHHHHhc-ChHHHHhcccccCcCCCCCCCcccchHHHHHHhhccccCchHHHHHHH Confidence 664 22222222222223333333323 22111122223333211 10 123333433 3567888888 Q ss_pred hHHHHhcCCcEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccEEEEEEecC--CCc-cc-------- Q lcl|Aclame:pro 71 LVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRD--EKD-WN-------- 139 (449) Q Consensus 71 pa~d~~r~~~~i~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~ea~~~~rl~Gga~i~i~i~d--~~~-~~-------- 139 (449) ..--.+|+.+++.. ++ ....+......-. .++.+-+..++.....||.+++++.... +.. .+ T Consensus 75 l~G~vf~k~p~~~~---p~---~l~~l~~d~D~~G-~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~t~a~~~~~~ 147 (501) T protein:vir:95 75 LVGQVFMRDPVVKV---PA---LLNPLVANATGSG-INLTQLAKRAVSLNLAYSRAGLLVDYPTTEAEGGASIADLEAGR 147 (501) T ss_pred HhhhhhcCCcceeC---cH---HHHHHHhccCCCC-CCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccccHHHHHhcc Confidence 88889999988721 11 1111111111000 1344556666666778999999997631 110 01 Q ss_pred -ccc-------cc-------cCc---eeeEEEeccccCChhhhhccccccccCC--ceeEEeeecccCC----------- Q lcl|Aclame:pro 140 -LPA-------TK-------GRG---LQKVSVSWAGSLKVAEWDTGINSKTYGQ--PKLWKYTERLPNG----------- 188 (449) Q Consensus 140 -~Pl-------~~-------~~~---l~~i~v~~~~~i~~~~~~~Dp~s~~yg~--P~~y~i~~~~~~~----------- 188 (449) .|. +. ..| |..+....+.. ..| ..|+. -+.|++.....+| T Consensus 148 ~rPy~~~~~~~~IinW~~~~v~g~~~l~~v~l~E~~~------~~d---~~f~~~~~~q~RvL~~~~~g~~~~~v~r~~~ 218 (501) T protein:vir:95 148 IRPTLYVYSPTEIINWRTTDRGAEEVLSLVVLFETWC------AAD---DGFEMKTSGQFRVLRLDEEGYYVHEIWREPQ 218 (501) T ss_pred CCcEEEEecHhhhcCcceeccCCceeeeEEEEEEEEe------ecC---CCcccceeEEEEEEeeCCCceEEEEEEEecC Confidence 121 00 011 11111111110 011 11221 1223222110000 Q ss_pred -------------Ccc--ceEE-----ccceeeecc----CC--CCCcc-hhHHHHHHHHHHHHHHhhHHHHHHHHHHhh Q lcl|Aclame:pro 189 -------------SSR--RVDI-----HPDRVFILG----DY--SEDAI-GFLEPAYNAFVSLEKVEGGSGESFLKNAAR 241 (449) Q Consensus 189 -------------~~~--~~~I-----H~SRli~~~----~~--~~~G~-s~l~~~~~~l~~~~~~~~~~a~l~~~~~~~ 241 (449) ... .... |.--.|.|. .+ ...|. |++..++=.+..|..... .-++++..+.- T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~lA~lni~hy~~ssd-~~~~l~~~~~P 297 (501) T protein:vir:95 219 PTKADGSKIPKGNYQQYVVYKPTDAQGKRLTEIPFMFIGSENNDSNPDNPNFYDLASLNMAHYRNSAD-YEESCYIVGQP 297 (501) T ss_pred CcccCcceecCCcccccceeeeeccCCCcCCeeeEEEEecCCCCCCCCccchHHHHHHHHHHHhhhhH-HHHHHHHcccc Confidence 000 0011 111122221 11 12222 344444434444333211 11222222222 Q ss_pred hhhhhhhhhhhHHHHHhhhccChHHHHHHHHHHHHHHhcc-ccceeecCCCceEEeecccCCh-HHHHHHHHHHHHhhhc Q lcl|Aclame:pro 242 QLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRG-NDVLMTTQGATVTPLVTSVADP-TATYNVNLQTAAAGVD 319 (449) Q Consensus 242 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ed~~~~~~~lsgl-~d~~~~~~~~iaaas~ 319 (449) ++.+. .+.+ +....... .-+.-| .+.+.+.++.++..++.+-+++ ...++...+++..+-- T Consensus 298 ~l~i~-----G~~~----------~~~~~~~~--~~i~~G~~~~~~lP~~~~~~~ie~~~~~i~~~~l~~l~~~m~~~Ga 360 (501) T protein:vir:95 298 TPVLI-----GLTE----------EWVTNVLK--GSVNFGSRGGIPLPVGADAKLLQASENTMLKEAMDTKERQMVALGA 360 (501) T ss_pred eeeee-----CCcc----------cccccCCC--CceeecccccccCCCCCceeEEecChhhHHHHHHHHHHHHHHHHHH Confidence 22221 0000 00000000 000012 1223445566777777665555 4445555555543321 Q ss_pred CCceeeeccCccccccch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHH Q lcl|Aclame:pro 320 IPTRILIGNQQAERSSTE---DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAK 396 (449) Q Consensus 320 IP~t~L~Gqs~gg~~s~e---D~~nyyd~I~~~Qe~~~~p~~~~l~~l~~~~~~~~~~~~~~~f~pL~~~sekE~Aei~~ 396 (449) +|+-+.++..++++ |...=+..++.+-.++-..+...|..+..+ .|..+++..|+.++-+....-+.++ T Consensus 361 ----~ll~~~~~~~Ta~~~~~~~~~~~S~L~~~a~~le~al~~~l~~~a~w-~g~~~~~~~v~i~~df~~~~~~~~~--- 432 (501) T protein:vir:95 361 ----KLVEQKEVQRTATEAELEAASEGSTLSSATKNVSAAFEWALKWAARW-VGQADSGVKFELNTDFDIARMTPDE--- 432 (501) T ss_pred ----hhccCCccchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCceEEEEecccccccCCHHH--- Confidence 22323333333333 322223344444334433333333333333 3333566778777776554333333 Q ss_pred HHHHHHHHHHHcCCccccCHHHHHHHh---cCCCCCCCCCCCCCcch--hhcccccCC Q lcl|Aclame:pro 397 TMGEINQTMLGSGDNPAFSREEIRTAA---GYDNDDEEPLGEEDGDE--EDKATDSAA 449 (449) Q Consensus 397 ~~A~a~~~~~~~g~~~~~~~~e~r~~~---~~~~~~~~~~~~~~~~e--e~~~~~~~a 449 (449) +++...++++| .|+.+.+++.. ++..++.....++..++ +....+..| T Consensus 433 --~~al~~~~~~G---~is~~t~~~~L~~~~v~~~~~~~e~e~i~~~~~~~~~~~~~~ 485 (501) T protein:vir:95 433 --RRSLVEEWQKG---AITFEEMRTGLRKAGVATEDDSKAKEKIAKDTAEAMALATPA 485 (501) T ss_pred --HHHHHHHHhCC---CCcHHHHHHHHHhCCCCChhHHHHHHHHHhhhcCcccccccC Confidence 45566666776 55555544332 11111100000000000 000001111 Done!