Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : P1 | Genbank acc : NC_005856 | Aclame index mge :1512

Category to which the Query Phage was assigned :

The queried phage was recognized as a Myoviridae
but could not be further assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 110

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	56	lcl\|Aclame:protein:vir:101327\|NCBI_annot:gp23\|genbank:acc:YP_006526;genbank:gi:46401680;genbank:Gene	HHsearch (proba=100.00%)
Portal	10	lcl\|Aclame:protein:vir:101418\|NCBI_annot:Prt\|genbank:acc:YP_006480;genbank:gi:46401636;genbank:GeneI	HHsearch (proba=100.00%)
TermL	106	lcl\|Aclame:protein:vir:101370\|NCBI_annot:PacB\|genbank:acc:YP_006576;genbank:gi:46401730;genbank:Gene	Blast (e-value=0)
MTP	39	lcl\|Aclame:protein:vir:101415\|NCBI_annot:Tub\|genbank:acc:YP_006509;genbank:gi:46401663;genbank:GeneI	Blast (e-value=1e-118)
Sheath	55	lcl\|Aclame:protein:vir:101326\|NCBI_annot:gp22\|genbank:acc:YP_006525;genbank:gi:46401679;genbank:Gene	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	11	lcl\|Aclame:protein:vir:101321\|NCBI_annot:Pro\|genbank:acc:YP_006481;genbank:gi:46401637;genbank:GeneI	HHsearch (proba=80.35%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104549 protein:vir:103181 protein:vir:104915	P-SSM4 Syn9 P-SSM2	16 % 16 % 15 %
Portal	protein:vir:101418 protein:vir:5839 protein:vir:81017	P1 RM 378 Phi1	100 % 18 % 14 %
TermL	protein:vir:101370 protein:vir:7319 protein:vir:106508	P1 epsilon15 phiAsp2	100 % 21 % 20 %
MTP	protein:vir:101415 protein:vir:80985 protein:vir:6595	P1 Phi1 RB49	100 % 22 % 22 %
Sheath	protein:vir:101326 protein:vir:78206 protein:vir:103993	P1 phiE12-2 phi52237	100 % 16 % 16 %
Tc1	protein:vir:488 protein:vir:4461 protein:vir:96978	P27 ST64B 42e	18 % 22 % 14 %