Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 56 lcl|Aclame:protein:vir:101327|NCBI_annot:gp23|genbank:acc:YP_006526;genbank:gi:46401680;genbank:Gene HHsearch (proba=100.00%)
Portal 10 lcl|Aclame:protein:vir:101418|NCBI_annot:Prt|genbank:acc:YP_006480;genbank:gi:46401636;genbank:GeneI HHsearch (proba=100.00%)
TermL 106 lcl|Aclame:protein:vir:101370|NCBI_annot:PacB|genbank:acc:YP_006576;genbank:gi:46401730;genbank:Gene Blast (e-value=0)
MTP 39 lcl|Aclame:protein:vir:101415|NCBI_annot:Tub|genbank:acc:YP_006509;genbank:gi:46401663;genbank:GeneI Blast (e-value=1e-118)
Sheath 55 lcl|Aclame:protein:vir:101326|NCBI_annot:gp22|genbank:acc:YP_006525;genbank:gi:46401679;genbank:Gene HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 11 lcl|Aclame:protein:vir:101321|NCBI_annot:Pro|genbank:acc:YP_006481;genbank:gi:46401637;genbank:GeneI HHsearch (proba=80.35%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.





Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:104549
protein:vir:103181
protein:vir:104915
P-SSM4
Syn9
P-SSM2
16 %
16 %
15 %
Portal protein:vir:101418
protein:vir:5839
protein:vir:81017
P1
RM 378
Phi1
100 %
18 %
14 %
TermL protein:vir:101370
protein:vir:7319
protein:vir:106508
P1
epsilon15
phiAsp2
100 %
21 %
20 %
MTP protein:vir:101415
protein:vir:80985
protein:vir:6595
P1
Phi1
RB49
100 %
22 %
22 %
Sheath protein:vir:101326
protein:vir:78206
protein:vir:103993
P1
phiE12-2
phi52237
100 %
16 %
16 %
Tc1 protein:vir:488
protein:vir:4461
protein:vir:96978
P27
ST64B
42e
18 %
22 %
14 %