Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi52237 | Genbank acc : NC_007145 | Aclame index mge :1665

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 9) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 47

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	2	lcl\|Aclame:protein:vir:104011\|NCBI_annot:P2	HHsearch (proba=100.00%)
Portal	5	lcl\|Aclame:protein:vir:103971\|NCBI_annot:pbsx	HHsearch (proba=100.00%)
TermL	4	lcl\|Aclame:protein:vir:103970\|NCBI_annot:phage	Blast (e-value=0)
MTP	29	lcl\|Aclame:protein:vir:103992\|NCBI_annot:phage	Blast (e-value=2e-98)
Sheath	30	lcl\|Aclame:protein:vir:103993\|NCBI_annot:phage	HHsearch (proba=100.00%)
Ad1	47	lcl\|Aclame:protein:vir:104009\|NCBI_annot:phage	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	39	lcl\|Aclame:protein:vir:104002\|NCBI_annot:phage	HHsearch (proba=100.00%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Ad1	8	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79171 protein:vir:1153 protein:vir:79157	phiE202 phi CTX RSA1	99 % 65 % 63 %
Portal	protein:vir:79207 protein:vir:79150 protein:vir:1150	phiE202 RSA1 phi CTX	99 % 63 % 57 %
TermL	protein:vir:79177 protein:vir:1151 protein:vir:79128	phiE202 phi CTX RSA1	99 % 64 % 64 %
MTP	protein:vir:79203 protein:vir:79133 protein:vir:1173	phiE202 RSA1 phi CTX	100 % 53 % 53 %
Sheath	protein:vir:79181 protein:vir:79141 protein:vir:1172	phiE202 RSA1 phi CTX	99 % 65 % 64 %
Ad1	protein:vir:79188 protein:vir:79124 protein:vir:1155	phiE202 RSA1 phi CTX	99 % 55 % 46 %
Ne1	protein:vir:79179 protein:vir:1164 protein:vir:79115	phiE202 phi CTX RSA1	100 % 47 % 42 %