BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:95181|NCBI_annot:Putative tail protein|genbank:acc:NP_944848;genbank:gi:38707688;genbank:GeneID:26588 87 (294 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|2833|lcl|protein:vir:105771 Length: 245 # NCBI annotation: gp... 58 1e-10 gi|839|lcl|protein:vir:93600 Length: 281 # NCBI annotation: puta... 55 8e-10 gi|15619|lcl|protein:vir:196 Length: 234 # NCBI annotation: majo... 50 2e-08 gi|6623|lcl|protein:vir:95971 Length: 301 # NCBI annotation: ORF... 24 2.2 gi|12836|lcl|protein:vir:80349 Length: 198 # NCBI annotation: gp... 23 5.2 gi|13942|lcl|protein:vir:1439 Length: 152 # NCBI annotation: put... 22 6.9 gi|8571|lcl|protein:vir:100083 Length: 152 # NCBI annotation: gp... 22 7.9 gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: te... 22 7.9 >gi|2833|lcl|protein:vir:105771 Length: 245 # NCBI annotation: gp16 # Family: family:all:628 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224154;genbank:gi:62362229;genbank:GeneID :3342524 Length = 245 Score = 57.8 bits (138), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 5/74 (6%) Query: 127 ITQQPTNQTVNEGGTLTLSVIAT----NATGYQWKKGGEDITSA-TSATYTKQSVAPSDA 181 IT QP +T+ G TLTL+V AT ++ YQWKK G +++S T+ATYTK S D+ Sbjct: 159 ITTQPQGKTLTAGDTLTLTVAATVSDSSSLTYQWKKDGINVSSGGTTATYTKSSATTGDS 218 Query: 182 GSYTCVVSGEAGTS 195 GSYTC +S S Sbjct: 219 GSYTCQISSSTAAS 232 Score = 52.4 bits (124), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 5/74 (6%) Query: 205 VNALPVITQQPSGQTVNEGGSINLEVTAT----GATGYQWKKGEEDILDA-TTATYTKEG 259 V + IT QP G+T+ G ++ L V AT + YQWKK ++ TTATYTK Sbjct: 153 VGTVITITTQPQGKTLTAGDTLTLTVAATVSDSSSLTYQWKKDGINVSSGGTTATYTKSS 212 Query: 260 ATAADAGSYTCVVT 273 AT D+GSYTC ++ Sbjct: 213 ATTGDSGSYTCQIS 226 >gi|839|lcl|protein:vir:93600 Length: 281 # NCBI annotation: putative major tail subunit # Family: family:all:628 # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449301;genbank:gi:157166049;goa:Q6H9U0 ;interpro:IPR007110;interpro:IPR013098;uniprot:Q6H9U0;ge nbank:GeneID:5580422 Length = 281 Score = 55.5 bits (132), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 5/77 (6%) Query: 135 TVNEGGTLTLSVIATNAT---GYQWKKGGEDITSATSATYTKQSVAPSDAGSYTCVV--S 189 TVN G LT+SV T + WKK G+ + T+ T++K + D G+YTC V S Sbjct: 201 TVNTGALLTMSVSVNGGTPPYKHAWKKDGQPVEGQTTDTFSKANTQSGDKGAYTCEVTDS 260 Query: 190 GEAGTSVTSDAATVTVN 206 E S+TSDA TVTVN Sbjct: 261 AEQPQSITSDACTVTVN 277 Score = 49.3 bits (116), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 6/79 (7%) Query: 219 TVNEGGSINLEVTATGAT---GYQWKKGEEDILDATTATYTKEGATAADAGSYTCVVTGA 275 TVN G + + V+ G T + WKK + + TT T++K + D G+YTC VT + Sbjct: 201 TVNTGALLTMSVSVNGGTPPYKHAWKKDGQPVEGQTTDTFSKANTQSGDKGAYTCEVTDS 260 Query: 276 G---GSVTSNAATVTVNPA 291 S+TS+A TVTVN A Sbjct: 261 AEQPQSITSDACTVTVNGA 279 >gi|15619|lcl|protein:vir:196 Length: 234 # NCBI annotation: major tail subunit # Family: family:all:628 # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037706;genbank:gi:9634159;genbank:GeneID: 1262542 Length = 234 Score = 50.4 bits (119), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 6/90 (6%) Query: 206 NALPVITQQPSGQTVNEGGSINLEVTATGAT---GYQWKKGEEDILDATTATYTKEGATA 262 + L + T PS +V G +I++ V A G Y WKK + T+ T+ K A + Sbjct: 145 SVLKLTTDLPSSLSVAVGAAISMAVVAAGGKPPYAYTWKKAGSTVSGQTSDTFNKATAVS 204 Query: 263 ADAGSYTCVVTGAGG---SVTSNAATVTVN 289 DAG YTCVVT + +VTS A T+T++ Sbjct: 205 GDAGDYTCVVTDSSSPVKTVTSAACTLTIS 234 Score = 48.5 bits (114), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 5/84 (5%) Query: 128 TQQPTNQTVNEGGTLTLSVIATNAT---GYQWKKGGEDITSATSATYTKQSVAPSDAGSY 184 T P++ +V G ++++V+A Y WKK G ++ TS T+ K + DAG Y Sbjct: 151 TDLPSSLSVAVGAAISMAVVAAGGKPPYAYTWKKAGSTVSGQTSDTFNKATAVSGDAGDY 210 Query: 185 TCVVSGEAG--TSVTSDAATVTVN 206 TCVV+ + +VTS A T+T++ Sbjct: 211 TCVVTDSSSPVKTVTSAACTLTIS 234 >gi|6623|lcl|protein:vir:95971 Length: 301 # NCBI annotation: ORF014 # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239807;genbank:gi:66395464;genbank:GeneID :5132888 Length = 301 Score = 23.9 bits (50), Expect = 2.2, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 11/90 (12%) Query: 211 ITQQPSGQTVNEGGSINLEVTAT--GATGYQWKKGEEDI----LDATTATYTKEGATAAD 264 I +PS V+ G +INL T A K D +DA + T Sbjct: 213 IVVEPSSANVDVGNTINLTTTIKPDNAKNKSIKFSTTDTQNINVDANSGV-----VTGLS 267 Query: 265 AGSYTCVVTGAGGSVTSNAATVTVNPAEEA 294 G T V+ GS ATVTVNP +++ Sbjct: 268 EGQATVTVSAQDGSGVVGTATVTVNPRQDS 297 >gi|12836|lcl|protein:vir:80349 Length: 198 # NCBI annotation: gp12 # Family: family:all:628 # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111091;genbank:gi:134288619;genbank:Ge neID:4960596 Length = 198 Score = 22.7 bits (47), Expect = 5.2, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 11/102 (10%) Query: 171 YTKQSVAPSDAGSYTCV-VSGEAGTSVTSDAATVTVNALPVITQQPSGQTVNEGGSINLE 229 + S P AG + C + E + S V V+ +P N+ ++L Sbjct: 29 HHDDSFGPPRAGLFICEGLMAERSKRIRSQGTKVEVSKVPSYDLD-----ANDITFVDLN 83 Query: 230 VTATGATGYQWKKGEEDILDATT-ATYTKEGATA-ADAGSYT 269 T QW+ G+ + +DATT A+ KE D G ++ Sbjct: 84 TTTKQ---IQWQGGQSEEIDATTFASEQKESELGLGDPGEFS 122 >gi|13942|lcl|protein:vir:1439 Length: 152 # NCBI annotation: putative major tail subunit protein # Family: family:all:628 # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536368;genbank:gi:17975173;genbank:GeneID :929142 Length = 152 Score = 22.3 bits (46), Expect = 6.9, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Query: 226 INLEVTATGATGYQWKKGEEDILDATT 252 + ++++ATG QW+ G+ + +DATT Sbjct: 32 VFVDLSATGKQ-IQWQGGQSEEIDATT 57 >gi|8571|lcl|protein:vir:100083 Length: 152 # NCBI annotation: gp11 # Family: family:all:628 # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945041;genbank:gi:38707901;genbank:GeneID :2744130 Length = 152 Score = 22.3 bits (46), Expect = 7.9, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%) Query: 228 LEVTATGATGYQWKKGEEDILDATT 252 ++++ATG QW+ G+ + +DATT Sbjct: 34 VDLSATGKQ-IQWQGGQSEEIDATT 57 >gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: terminase # Family: family:all:543 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285801;genbank:gi:148747835;genbank:Ge neID:5220445 Length = 565 Score = 22.3 bits (46), Expect = 7.9, Method: Compositional matrix adjust. Identities = 9/19 (47%), Positives = 14/19 (73%) Query: 125 PAITQQPTNQTVNEGGTLT 143 P + ++PT QTV+ G T+T Sbjct: 177 PTVMKEPTVQTVSIGTTVT 195 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.311 0.127 0.364 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 133,480 Number of Sequences: 514 Number of extensions: 5987 Number of successful extensions: 37 Number of sequences better than 100.0: 21 Number of HSP's better than 100.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 26 length of query: 294 length of database: 206,069 effective HSP length: 71 effective length of query: 223 effective length of database: 169,575 effective search space: 37815225 effective search space used: 37815225 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 37 (18.9 bits)