Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 25 | Genbank acc : NC_008208 | Aclame index mge :1488

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 242

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	156	lcl\|Aclame:protein:vir:100603\|NCBI_annot:gp23	HHsearch (proba=100.00%)
Portal	151	lcl\|Aclame:protein:vir:100598\|NCBI_annot:gp20	HHsearch (proba=100.00%)
TermL	148	lcl\|Aclame:protein:vir:100538\|NCBI_annot:gp17	Blast (e-value=0)
MTP	150	lcl\|Aclame:protein:vir:100597\|NCBI_annot:gp19	Blast (e-value=2e-94)
Sheath	149	lcl\|Aclame:protein:vir:100539\|NCBI_annot:gp18	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	144	lcl\|Aclame:protein:vir:100534\|NCBI_annot:gp13	HHsearch (proba=100.00%)
Hc2	145	lcl\|Aclame:protein:vir:100535\|NCBI_annot:gp14	HHsearch (proba=100.00%)
Tc2	146	lcl\|Aclame:protein:vir:100536\|NCBI_annot:gp15	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:100603 protein:vir:101039 protein:vir:101811	25 44RR2.8t 31	100 % 93 % 92 %
Portal	protein:vir:100598 protein:vir:101189 protein:vir:101806	25 44RR2.8t 31	100 % 91 % 91 %
TermL	protein:vir:100538 protein:vir:101186 protein:vir:101803	25 44RR2.8t 31	100 % 87 % 86 %
MTP	protein:vir:100597 protein:vir:101188 protein:vir:101805	25 44RR2.8t 31	100 % 88 % 88 %
Sheath	protein:vir:100539 protein:vir:101187 protein:vir:101804	25 44RR2.8t 31	100 % 86 % 86 %
Ad2	protein:vir:100534 protein:vir:101153 protein:vir:101857	25 44RR2.8t 31	100 % 84 % 84 %
Hc2	protein:vir:100535 protein:vir:101154 protein:vir:101800	25 44RR2.8t 31	100 % 82 % 82 %
Tc2	protein:vir:100536 protein:vir:101155 protein:vir:101801	25 44RR2.8t 31	100 % 80 % 80 %