Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 6 lcl|Aclame:protein:vir:4600|NCBI_annot:capsid HHsearch (proba=100.00%)
Portal 4 lcl|Aclame:protein:vir:4598|NCBI_annot:portal HHsearch (proba=100.00%)
TermL 2 lcl|Aclame:protein:vir:4596|NCBI_annot:hypothetical Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 8 lcl|Aclame:protein:vir:4602|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 9 lcl|Aclame:protein:vir:4603|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ne1 10 lcl|Aclame:protein:vir:4604|NCBI_annot:hypothetical HHsearch (proba=99.96%)
Tc1 11 lcl|Aclame:protein:vir:4605|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:81100
protein:vir:79987
protein:vir:98339
tp310-1
tp310-3
phiPVL(108)
100 %
100 %
100 %
Portal protein:vir:81095
protein:vir:79984
protein:vir:98396
tp310-1
tp310-3
phiPVL(108)
100 %
100 %
100 %
TermL protein:vir:81099
protein:vir:79971
protein:vir:98395
tp310-1
tp310-3
phiPVL(108)
100 %
100 %
100 %
Ad1 protein:vir:4602
protein:vir:79990
protein:vir:98340
PVL
tp310-3
phiPVL(108)
100 %
98 %
98 %
Hc1 protein:vir:81103
protein:vir:79989
protein:vir:98341
tp310-1
tp310-3
phiPVL(108)
100 %
100 %
100 %
Ne1 protein:vir:4604PVL100 %
Tc1 protein:vir:4605
protein:vir:98343
protein:vir:9415
PVL
phiPVL(108)
phi 13
100 %
99 %
99 %