Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PVL | Genbank acc : NC_002321 | Aclame index mge :101

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 62

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:4600\|NCBI_annot:capsid	HHsearch (proba=100.00%)
Portal	4	lcl\|Aclame:protein:vir:4598\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:4596\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:4602\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:4603\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	10	lcl\|Aclame:protein:vir:4604\|NCBI_annot:hypothetical	HHsearch (proba=99.96%)
Tc1	11	lcl\|Aclame:protein:vir:4605\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:81100 protein:vir:79987 protein:vir:98339	tp310-1 tp310-3 phiPVL(108)	100 % 100 % 100 %
Portal	protein:vir:81095 protein:vir:79984 protein:vir:98396	tp310-1 tp310-3 phiPVL(108)	100 % 100 % 100 %
TermL	protein:vir:81099 protein:vir:79971 protein:vir:98395	tp310-1 tp310-3 phiPVL(108)	100 % 100 % 100 %
Ad1	protein:vir:4602 protein:vir:79990 protein:vir:98340	PVL tp310-3 phiPVL(108)	100 % 98 % 98 %
Hc1	protein:vir:81103 protein:vir:79989 protein:vir:98341	tp310-1 tp310-3 phiPVL(108)	100 % 100 % 100 %
Ne1	protein:vir:4604	PVL	100 %
Tc1	protein:vir:4605 protein:vir:98343 protein:vir:9415	PVL phiPVL(108) phi 13	100 % 99 % 99 %