Query lcl|Aclame:protein:vir:93610|NCBI_annot:putative portal protein|genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Match_columns 454 No_of_seqs 129 out of 1219 Neff 9.8 Searched_HMMs 1612 Date Sat Nov 30 12:51:41 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_72 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_72_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:93610 Length: 454 100.0 1E-115 7E-119 650.6 46.4 454 1-454 1-454 (454) 2 protein:vir:4337 Length: 434 # 100.0 1.4E-96 9E-100 546.1 42.8 422 1-428 1-434 (434) 3 protein:vir:102080 Length: 429 100.0 1.4E-96 9E-100 546.1 42.6 417 1-433 7-429 (429) 4 protein:vir:102855 Length: 432 100.0 3.6E-96 2.2E-99 543.9 42.9 421 1-433 3-432 (432) 5 protein:vir:107605 Length: 432 100.0 3.6E-96 2.2E-99 543.9 42.9 421 1-433 3-432 (432) 6 protein:vir:105002 Length: 432 100.0 3.6E-96 2.2E-99 543.9 42.9 421 1-433 3-432 (432) 7 protein:vir:105064 Length: 421 100.0 5.6E-96 3.5E-99 542.8 43.5 412 1-439 1-421 (421) 8 protein:vir:4509 Length: 424 # 100.0 5.4E-96 3.4E-99 542.9 42.4 401 1-431 18-424 (424) 9 protein:vir:1884 Length: 424 # 100.0 8.9E-96 5.5E-99 541.7 42.2 401 1-415 16-424 (424) 10 protein:vir:7853 Length: 518 # 100.0 3.1E-95 1.9E-98 538.7 44.3 443 3-454 1-462 (518) 11 protein:vir:4454 Length: 414 # 100.0 2.6E-95 1.6E-98 539.1 43.7 410 2-437 1-414 (414) 12 protein:vir:189 Length: 424 # 100.0 2.4E-95 1.5E-98 539.3 42.1 401 1-415 16-424 (424) 13 protein:vir:100249 Length: 431 100.0 3E-95 1.9E-98 538.8 42.6 404 1-417 3-431 (431) 14 protein:vir:101648 Length: 518 100.0 1E-94 6.2E-98 535.9 44.5 443 1-454 1-482 (518) 15 protein:vir:6240 Length: 457 # 100.0 7.5E-95 4.7E-98 536.6 43.5 441 1-446 3-457 (457) 16 protein:vir:10362 Length: 432 100.0 6E-95 3.8E-98 537.1 42.5 417 1-434 9-432 (432) 17 protein:vir:1431 Length: 419 # 100.0 9.1E-95 5.6E-98 536.1 42.9 411 1-437 1-419 (419) 18 protein:vir:483 Length: 413 # 100.0 1.9E-94 1.2E-97 534.4 43.1 407 1-422 1-413 (413) 19 protein:vir:81152 Length: 411 100.0 6.9E-95 4.3E-98 536.8 40.5 398 1-416 3-411 (411) 20 protein:vir:102118 Length: 409 100.0 1.7E-94 1.1E-97 534.7 41.4 398 1-419 1-409 (409) 21 protein:vir:97060 Length: 432 100.0 3.2E-94 2E-97 533.1 42.8 417 1-433 9-432 (432) 22 protein:vir:81072 Length: 432 100.0 4.7E-94 2.9E-97 532.2 42.8 414 1-433 6-432 (432) 23 protein:vir:5737 Length: 419 # 100.0 7.5E-94 4.7E-97 531.1 42.8 408 1-426 3-419 (419) 24 protein:vir:1380 Length: 422 # 100.0 4.2E-94 2.6E-97 532.5 41.3 407 1-419 3-422 (422) 25 protein:vir:1326 Length: 457 # 100.0 2E-93 1.3E-96 528.8 44.0 439 1-443 3-457 (457) 26 protein:vir:1266 Length: 416 # 100.0 1.5E-93 9.4E-97 529.4 42.8 410 1-432 2-416 (416) 27 protein:vir:100150 Length: 437 100.0 4.4E-93 2.7E-96 526.9 43.5 423 1-434 1-437 (437) 28 protein:vir:80333 Length: 419 100.0 5.6E-93 3.5E-96 526.3 41.1 411 1-453 1-419 (419) 29 protein:vir:98396 Length: 441 100.0 6.1E-92 3.8E-95 520.7 42.3 412 1-431 25-441 (441) 30 protein:vir:9408 Length: 441 # 100.0 1.4E-91 8.6E-95 518.7 42.3 415 1-431 10-441 (441) 31 protein:vir:79984 Length: 441 100.0 1.4E-91 8.6E-95 518.7 42.3 415 1-431 10-441 (441) 32 protein:vir:8418 Length: 409 # 100.0 4.2E-91 2.6E-94 516.1 43.0 406 2-434 1-409 (409) 33 protein:vir:2683 Length: 412 # 100.0 6.9E-91 4.3E-94 514.9 41.6 407 2-426 1-412 (412) 34 protein:vir:101647 Length: 460 100.0 3.1E-90 1.9E-93 511.3 41.1 410 1-419 1-460 (460) 35 protein:vir:81095 Length: 416 100.0 8E-90 4.9E-93 509.1 42.9 411 2-431 1-416 (416) 36 protein:vir:4598 Length: 416 # 100.0 8E-90 4.9E-93 509.1 42.9 411 2-431 1-416 (416) 37 protein:vir:93943 Length: 409 100.0 2.8E-89 1.7E-92 506.1 41.1 401 1-426 3-409 (409) 38 protein:vir:96980 Length: 409 100.0 4.1E-89 2.6E-92 505.1 41.8 401 1-432 3-409 (409) 39 protein:vir:94426 Length: 409 100.0 7.4E-89 4.6E-92 503.8 42.4 399 1-426 6-409 (409) 40 protein:vir:102727 Length: 945 100.0 1.5E-88 9.3E-92 502.1 43.8 447 1-454 76-550 (945) 41 protein:vir:81218 Length: 423 100.0 6.3E-89 3.9E-92 504.1 41.6 403 1-413 3-423 (423) 42 protein:vir:3868 Length: 417 # 100.0 1.1E-88 7.1E-92 502.7 41.6 411 2-436 1-417 (417) 43 protein:vir:94666 Length: 723 100.0 6.7E-87 4.2E-90 493.0 42.1 426 16-454 1-460 (723) 44 protein:vir:95378 Length: 406 100.0 1.6E-86 9.9E-90 491.0 41.9 398 1-436 3-406 (406) 45 protein:vir:9702 Length: 406 # 100.0 5.6E-86 3.4E-89 488.0 40.0 399 2-435 1-406 (406) 46 protein:vir:8317 Length: 409 # 100.0 8.5E-86 5.3E-89 487.0 38.4 378 1-399 3-409 (409) 47 protein:vir:80134 Length: 403 100.0 3.6E-85 2.2E-88 483.5 40.2 394 1-427 3-403 (403) 48 protein:vir:960 Length: 413 # 100.0 4.8E-85 3E-88 482.9 39.6 394 1-415 12-413 (413) 49 protein:vir:3843 Length: 397 # 100.0 1.3E-84 8.1E-88 480.5 40.7 396 2-440 1-397 (397) 50 protein:vir:8100 Length: 466 # 100.0 2.6E-84 1.6E-87 478.8 42.2 420 1-433 3-466 (466) 51 protein:vir:80644 Length: 551 100.0 2.7E-83 1.6E-86 473.3 39.3 447 1-454 39-547 (551) 52 protein:vir:63755 Length: 547 100.0 1.9E-81 1.2E-84 463.1 38.7 447 2-454 1-543 (547) 53 protein:vir:104259 Length: 403 100.0 4.7E-81 2.9E-84 461.0 40.7 388 1-433 3-403 (403) 54 protein:vir:9359 Length: 348 # 100.0 1.7E-80 1.1E-83 457.9 38.6 343 66-426 1-348 (348) 55 protein:vir:4854 Length: 386 # 100.0 7.5E-80 4.7E-83 454.4 39.7 384 2-411 1-386 (386) 56 protein:vir:80796 Length: 574 100.0 1.9E-79 1.2E-82 452.2 41.2 447 1-454 41-547 (574) 57 protein:vir:7407 Length: 392 # 100.0 1.5E-79 9.4E-83 452.7 38.9 383 1-426 5-392 (392) 58 protein:vir:100187 Length: 385 100.0 2.7E-79 1.7E-82 451.3 39.9 375 1-409 3-385 (385) 59 protein:vir:6210 Length: 394 # 100.0 2.7E-79 1.7E-82 451.3 38.3 384 1-426 3-394 (394) 60 protein:vir:99312 Length: 563 100.0 6.7E-79 4.2E-82 449.2 39.0 446 1-454 42-551 (563) 61 protein:vir:95599 Length: 563 100.0 6.7E-79 4.2E-82 449.2 39.0 446 1-454 42-551 (563) 62 protein:vir:100882 Length: 383 100.0 1.5E-78 9E-82 447.3 39.5 375 1-407 3-383 (383) 63 protein:vir:1023 Length: 392 # 100.0 2.2E-78 1.4E-81 446.4 39.0 383 1-426 5-392 (392) 64 protein:vir:3989 Length: 392 # 100.0 2.2E-78 1.4E-81 446.4 39.0 383 1-426 5-392 (392) 65 protein:vir:96579 Length: 576 100.0 2.5E-78 1.6E-81 446.0 38.7 451 1-454 5-545 (576) 66 protein:vir:1082 Length: 359 # 100.0 2.1E-77 1.3E-80 441.0 37.1 350 1-387 3-359 (359) 67 protein:vir:4995 Length: 384 # 100.0 3.3E-77 2.1E-80 439.9 35.3 372 2-393 1-384 (384) 68 protein:vir:4952 Length: 386 # 100.0 3.4E-76 2.1E-79 434.3 39.7 384 2-433 1-386 (386) 69 protein:vir:100691 Length: 535 100.0 1.5E-75 9.6E-79 430.7 40.1 434 1-442 36-535 (535) 70 protein:vir:100650 Length: 395 100.0 1.4E-75 8.4E-79 431.0 38.1 381 1-433 3-395 (395) 71 protein:vir:9507 Length: 395 # 100.0 1.4E-75 8.4E-79 431.0 38.1 381 1-433 3-395 (395) 72 protein:vir:101289 Length: 395 100.0 1.4E-75 8.4E-79 431.0 38.1 381 1-433 3-395 (395) 73 protein:vir:4194 Length: 540 # 100.0 1E-75 6.3E-79 431.7 36.9 430 1-454 1-487 (540) 74 protein:vir:3153 Length: 467 # 100.0 1.9E-75 1.2E-78 430.3 38.1 404 45-451 1-467 (467) 75 protein:vir:4828 Length: 382 # 100.0 7E-75 4.3E-78 427.1 39.1 376 2-429 1-382 (382) 76 protein:vir:78310 Length: 376 100.0 8.9E-75 5.5E-78 426.6 34.8 367 2-408 1-376 (376) 77 protein:vir:4156 Length: 542 # 100.0 7E-74 4.3E-77 421.7 38.4 431 1-454 1-479 (542) 78 protein:vir:95965 Length: 385 100.0 2E-74 1.3E-77 424.6 35.0 368 1-412 3-385 (385) 79 protein:vir:4089 Length: 395 # 100.0 2.9E-73 1.8E-76 418.3 34.5 382 1-432 3-395 (395) 80 protein:vir:9641 Length: 395 # 100.0 6.2E-73 3.9E-76 416.4 32.9 377 1-414 3-395 (395) 81 protein:vir:94002 Length: 378 100.0 1.9E-72 1.2E-75 413.7 34.8 358 2-434 1-378 (378) 82 protein:vir:1661 Length: 378 # 100.0 5.2E-72 3.2E-75 411.4 35.2 358 2-434 1-378 (378) 83 protein:vir:93867 Length: 378 100.0 5.6E-72 3.5E-75 411.2 34.5 358 2-434 1-378 (378) 84 protein:vir:98643 Length: 395 100.0 2.9E-71 1.8E-74 407.3 33.7 378 1-414 3-395 (395) 85 protein:vir:79772 Length: 648 100.0 2E-69 1.2E-72 397.2 40.2 445 1-454 10-531 (648) 86 protein:vir:858 Length: 378 # 100.0 5.8E-70 3.6E-73 400.2 35.6 358 2-434 1-378 (378) 87 protein:vir:94869 Length: 378 100.0 3E-69 1.9E-72 396.2 34.8 358 2-434 1-378 (378) 88 protein:vir:99452 Length: 651 100.0 6.6E-69 4.1E-72 394.4 35.4 428 1-454 1-555 (651) 89 protein:vir:78641 Length: 278 100.0 3E-62 1.9E-65 357.9 31.8 274 66-351 1-278 (278) 90 protein:vir:79150 Length: 368 100.0 2.9E-56 1.8E-59 325.1 26.8 337 5-367 1-368 (368) 91 protein:vir:103971 Length: 376 100.0 3.9E-55 2.4E-58 318.9 30.7 320 1-358 18-376 (376) 92 protein:vir:267 Length: 348 # 100.0 4.2E-55 2.6E-58 318.7 30.1 325 1-359 1-348 (348) 93 protein:vir:100328 Length: 346 100.0 5E-55 3.1E-58 318.3 29.4 330 1-356 1-346 (346) 94 protein:vir:79207 Length: 351 100.0 3.9E-54 2.4E-57 313.4 29.6 316 5-358 1-351 (351) 95 protein:vir:3743 Length: 345 # 100.0 4.6E-54 2.9E-57 313.0 30.0 321 5-353 1-345 (345) 96 protein:vir:3780 Length: 345 # 100.0 3.9E-54 2.4E-57 313.4 29.3 334 5-353 1-345 (345) 97 protein:vir:78191 Length: 351 100.0 5.9E-54 3.7E-57 312.4 29.9 316 5-358 1-351 (351) 98 protein:vir:1150 Length: 350 # 100.0 3.6E-54 2.2E-57 313.6 26.5 321 5-351 1-350 (350) 99 protein:vir:98567 Length: 340 100.0 3E-53 1.9E-56 308.5 29.0 326 1-355 1-340 (340) 100 protein:vir:78749 Length: 337 100.0 5.9E-53 3.7E-56 306.9 26.3 320 5-352 1-337 (337) 101 protein:vir:5691 Length: 344 # 100.0 1.6E-52 9.9E-56 304.6 28.4 324 5-356 1-344 (344) 102 protein:vir:6058 Length: 344 # 100.0 3.9E-52 2.4E-55 302.4 27.7 328 1-356 1-344 (344) 103 protein:vir:2013 Length: 344 # 100.0 7.4E-52 4.6E-55 300.9 28.1 326 5-356 1-344 (344) 104 protein:vir:4698 Length: 251 # 100.0 2.1E-50 1.3E-53 292.9 25.8 249 2-264 1-251 (251) 105 protein:vir:98853 Length: 219 100.0 1E-45 6.2E-49 267.3 21.9 211 145-355 1-219 (219) 106 protein:vir:5249 Length: 437 # 100.0 7.6E-30 4.7E-33 180.2 31.1 390 1-440 3-437 (437) 107 protein:vir:107742 Length: 537 99.9 4.2E-27 2.6E-30 165.2 31.8 424 1-438 1-537 (537) 108 protein:vir:94049 Length: 532 99.9 5.1E-26 3.2E-29 159.2 30.6 438 1-454 19-532 (532) 109 protein:vir:108215 Length: 469 99.9 2.1E-23 1.3E-26 144.9 35.6 422 1-446 1-469 (469) 110 protein:vir:96068 Length: 765 99.9 2.7E-23 1.6E-26 144.4 28.9 437 1-454 43-577 (765) 111 protein:vir:103860 Length: 528 99.9 4.6E-22 2.9E-25 137.5 33.6 431 1-454 4-480 (528) 112 protein:vir:99232 Length: 526 99.9 8.7E-22 5.4E-25 136.0 34.9 433 1-454 1-478 (526) 113 protein:vir:79233 Length: 526 99.9 2.4E-21 1.5E-24 133.6 34.5 430 1-454 1-478 (526) 114 protein:vir:99563 Length: 862 99.9 3.9E-22 2.4E-25 138.0 30.2 436 1-454 84-622 (862) 115 protein:vir:79647 Length: 435 99.9 3E-22 1.9E-25 138.6 26.6 387 2-434 1-435 (435) 116 protein:vir:79538 Length: 502 99.9 5.4E-22 3.3E-25 137.2 27.2 432 2-441 1-502 (502) 117 protein:vir:80040 Length: 461 99.9 9E-22 5.6E-25 136.0 27.9 396 1-432 1-461 (461) 118 protein:vir:99853 Length: 488 99.9 8.5E-21 5.3E-24 130.6 32.3 413 5-454 1-436 (488) 119 protein:vir:79063 Length: 491 99.9 1.7E-20 1E-23 129.0 33.8 413 1-454 5-449 (491) 120 protein:vir:107880 Length: 491 99.8 9.7E-20 6E-23 124.8 34.5 412 1-454 5-449 (491) 121 protein:vir:1986 Length: 512 # 99.8 1.3E-19 8.3E-23 124.0 34.2 423 1-454 1-460 (512) 122 protein:vir:389 Length: 530 # 99.8 6E-21 3.7E-24 131.5 25.8 432 1-435 3-530 (530) 123 protein:vir:104338 Length: 422 99.8 4.8E-21 3E-24 132.0 25.2 374 1-431 1-422 (422) 124 protein:vir:107662 Length: 427 99.8 1.7E-20 1E-23 129.0 27.3 373 1-433 3-427 (427) 125 protein:vir:96738 Length: 505 99.8 3.3E-21 2.1E-24 132.8 23.0 423 1-431 7-505 (505) 126 protein:vir:3420 Length: 533 # 99.8 1.9E-20 1.2E-23 128.7 25.8 432 1-435 1-533 (533) 127 protein:vir:6382 Length: 553 # 99.8 4E-20 2.5E-23 126.9 24.9 431 1-442 1-553 (553) 128 protein:vir:95254 Length: 488 99.8 3.8E-18 2.4E-21 116.1 33.1 418 1-442 1-488 (488) 129 protein:vir:10321 Length: 495 99.8 1.8E-19 1.1E-22 123.3 24.4 422 2-434 1-495 (495) 130 protein:vir:79511 Length: 448 99.8 1.7E-17 1E-20 112.5 32.3 408 1-442 1-448 (448) 131 protein:vir:95542 Length: 548 99.8 9.5E-19 5.9E-22 119.4 24.8 438 2-443 1-548 (548) 132 protein:vir:77981 Length: 448 99.7 2.7E-17 1.7E-20 111.4 30.9 409 1-450 1-448 (448) 133 protein:vir:98816 Length: 446 99.7 2.5E-16 1.5E-19 106.1 28.8 374 2-390 1-446 (446) 134 protein:vir:78161 Length: 355 99.6 1.5E-14 9.2E-18 96.4 28.8 314 121-454 1-346 (355) 135 protein:vir:105782 Length: 449 99.6 8.4E-15 5.2E-18 97.7 26.2 394 1-423 1-449 (449) 136 protein:vir:106716 Length: 698 99.5 2.3E-14 1.4E-17 95.3 23.5 439 1-454 51-587 (698) 137 protein:vir:102426 Length: 631 99.5 5.4E-15 3.4E-18 98.8 18.9 440 1-454 1-548 (631) 138 protein:vir:78589 Length: 695 99.5 4.7E-14 2.9E-17 93.6 23.8 436 1-454 51-622 (695) 139 protein:vir:101541 Length: 694 99.5 3.9E-14 2.4E-17 94.1 23.0 440 1-454 68-621 (694) 140 protein:vir:106491 Length: 646 99.5 1E-13 6.3E-17 91.8 24.5 441 2-454 1-544 (646) 141 protein:vir:3648 Length: 695 # 99.5 1.2E-13 7.4E-17 91.4 23.7 440 1-454 43-622 (695) 142 protein:vir:106027 Length: 629 99.4 3E-13 1.9E-16 89.2 23.0 441 1-454 1-537 (629) 143 protein:vir:8654 Length: 629 # 99.4 9.1E-14 5.6E-17 92.1 17.4 437 1-454 1-548 (629) 144 protein:vir:99088 Length: 629 99.4 1.1E-13 6.8E-17 91.6 17.3 440 1-454 1-548 (629) 145 protein:vir:7768 Length: 484 # 99.2 6.6E-12 4.1E-15 81.9 21.1 402 1-443 20-484 (484) 146 protein:vir:97900 Length: 639 99.2 8.9E-12 5.5E-15 81.2 20.4 443 1-454 1-554 (639) 147 protein:vir:107517 Length: 639 99.2 8.9E-12 5.5E-15 81.2 20.4 443 1-454 1-554 (639) 148 protein:vir:104082 Length: 485 99.2 8.7E-12 5.4E-15 81.2 20.1 405 1-435 17-485 (485) 149 protein:vir:98444 Length: 434 99.2 1.3E-10 8.2E-14 74.7 26.3 371 34-432 1-434 (434) 150 protein:vir:4898 Length: 502 # 99.2 3.5E-10 2.2E-13 72.4 26.7 420 1-438 38-502 (502) 151 protein:vir:2427 Length: 485 # 99.1 2.4E-10 1.5E-13 73.3 24.5 404 1-444 21-485 (485) 152 protein:vir:5961 Length: 503 # 99.1 1.8E-09 1.1E-12 68.5 30.2 413 1-442 1-503 (503) 153 protein:vir:96494 Length: 501 99.1 8.3E-10 5.2E-13 70.4 26.8 415 1-442 37-501 (501) 154 protein:vir:4223 Length: 486 # 99.1 9.3E-11 5.8E-14 75.6 21.1 406 1-435 17-486 (486) 155 protein:vir:2732 Length: 501 # 99.1 1.2E-09 7.5E-13 69.5 26.5 416 1-445 37-501 (501) 156 protein:vir:99916 Length: 504 99.1 1.2E-09 7.3E-13 69.5 26.2 426 1-443 1-504 (504) 157 protein:vir:5839 Length: 533 # 99.0 9.9E-10 6.1E-13 70.0 24.6 429 1-442 1-533 (533) 158 protein:vir:94742 Length: 409 99.0 2.2E-09 1.4E-12 68.0 25.3 347 1-387 5-409 (409) 159 protein:vir:2341 Length: 488 # 99.0 7.6E-10 4.7E-13 70.6 21.8 408 1-432 12-488 (488) 160 protein:vir:9306 Length: 511 # 99.0 1.8E-09 1.1E-12 68.5 23.6 418 1-440 28-511 (511) 161 protein:vir:103951 Length: 511 99.0 6E-09 3.8E-12 65.6 25.8 418 1-440 39-511 (511) 162 protein:vir:95113 Length: 474 99.0 1E-08 6.3E-12 64.4 29.0 393 1-438 1-474 (474) 163 protein:vir:96240 Length: 511 98.9 5.2E-09 3.2E-12 66.0 24.7 418 1-440 28-511 (511) 164 protein:vir:7987 Length: 456 # 98.9 2.7E-09 1.7E-12 67.6 22.0 392 1-434 1-456 (456) 165 protein:vir:8184 Length: 474 # 98.9 9.9E-09 6.1E-12 64.5 24.2 391 1-419 23-474 (474) 166 protein:vir:1634 Length: 409 # 98.9 1.8E-08 1.1E-11 63.1 25.5 345 1-387 5-409 (409) 167 protein:vir:97171 Length: 512 98.9 1.5E-08 9.1E-12 63.5 24.8 418 1-440 31-512 (512) 168 protein:vir:102602 Length: 456 98.9 2.7E-09 1.7E-12 67.5 20.3 393 1-434 9-456 (456) 169 protein:vir:105819 Length: 456 98.9 2.7E-09 1.7E-12 67.5 20.3 393 1-434 9-456 (456) 170 protein:vir:78227 Length: 480 98.8 2E-08 1.2E-11 62.8 24.6 403 1-443 11-480 (480) 171 protein:vir:78805 Length: 511 98.8 1.9E-08 1.2E-11 63.0 24.3 418 1-440 28-511 (511) 172 protein:vir:96366 Length: 511 98.8 1.9E-08 1.2E-11 63.0 24.3 418 1-440 28-511 (511) 173 protein:vir:99072 Length: 479 98.8 3.5E-08 2.2E-11 61.4 25.6 405 1-441 22-479 (479) 174 protein:vir:38 Length: 496 # N 98.8 1.9E-08 1.2E-11 62.9 24.0 399 1-440 1-496 (496) 175 protein:vir:95806 Length: 440 98.8 2.8E-08 1.8E-11 62.0 24.9 392 1-440 1-440 (440) 176 protein:vir:99781 Length: 511 98.8 2.5E-08 1.5E-11 62.3 23.9 418 1-441 28-511 (511) 177 protein:vir:105889 Length: 474 98.8 4.8E-08 3E-11 60.7 28.2 396 1-438 14-474 (474) 178 protein:vir:94101 Length: 474 98.8 4.8E-08 3E-11 60.7 28.2 396 1-438 14-474 (474) 179 protein:vir:93747 Length: 472 98.8 5.9E-08 3.6E-11 60.2 30.3 393 1-438 25-472 (472) 180 protein:vir:78537 Length: 480 98.7 6.7E-08 4.2E-11 59.9 26.0 405 1-445 11-480 (480) 181 protein:vir:2500 Length: 501 # 98.7 5.4E-08 3.4E-11 60.4 24.0 388 1-441 35-501 (501) 182 protein:vir:79043 Length: 479 98.7 7.3E-08 4.5E-11 59.7 25.2 392 1-432 1-479 (479) 183 protein:vir:97447 Length: 474 98.7 7.5E-08 4.7E-11 59.6 29.2 393 1-438 1-474 (474) 184 protein:vir:94498 Length: 474 98.7 7.5E-08 4.7E-11 59.6 29.2 393 1-438 1-474 (474) 185 protein:vir:3964 Length: 453 # 98.7 7.8E-08 4.8E-11 59.6 24.8 395 1-440 18-453 (453) 186 protein:vir:1236 Length: 483 # 98.7 9.8E-08 6.1E-11 59.0 30.1 398 1-438 36-483 (483) 187 protein:vir:106639 Length: 481 98.7 1E-07 6.3E-11 58.9 26.1 406 1-434 12-481 (481) 188 protein:vir:80680 Length: 441 98.7 6.6E-08 4.1E-11 60.0 22.9 376 1-429 12-441 (441) 189 protein:vir:9751 Length: 422 # 98.7 1.1E-07 6.9E-11 58.7 24.6 361 1-403 5-422 (422) 190 protein:vir:733 Length: 453 # 98.7 1.3E-07 7.9E-11 58.4 24.3 398 2-434 1-453 (453) 191 protein:vir:94805 Length: 492 98.7 1.3E-07 8.2E-11 58.3 30.7 396 1-438 45-492 (492) 192 protein:vir:80959 Length: 499 98.6 1.6E-07 1E-10 57.8 25.4 397 1-440 1-499 (499) 193 protein:vir:1587 Length: 508 # 98.6 1.5E-07 9.4E-11 58.0 23.1 395 1-433 3-508 (508) 194 protein:vir:9871 Length: 429 # 98.6 1.8E-07 1.1E-10 57.5 23.4 383 1-433 2-429 (429) 195 protein:vir:97336 Length: 492 98.6 2.2E-07 1.3E-10 57.1 29.7 393 1-438 45-492 (492) 196 protein:vir:96266 Length: 474 98.6 3E-07 1.9E-10 56.3 28.6 397 1-436 28-474 (474) 197 protein:vir:95899 Length: 474 98.6 3E-07 1.9E-10 56.3 28.6 397 1-436 28-474 (474) 198 protein:vir:99522 Length: 470 98.5 3.2E-07 2E-10 56.2 25.0 400 1-442 1-470 (470) 199 protein:vir:9568 Length: 410 # 98.5 4.1E-07 2.5E-10 55.6 26.4 355 2-406 1-410 (410) 200 protein:vir:105292 Length: 478 98.4 6.5E-07 4E-10 54.5 30.8 392 1-436 27-478 (478) 201 protein:vir:103219 Length: 201 98.4 2.8E-08 1.7E-11 62.0 14.1 183 224-430 1-201 (201) 202 protein:vir:106571 Length: 499 98.4 7.6E-07 4.7E-10 54.1 25.4 414 1-444 1-499 (499) 203 protein:vir:3609 Length: 452 # 98.4 1.1E-06 6.7E-10 53.3 26.0 389 1-442 8-452 (452) 204 protein:vir:4782 Length: 522 # 98.4 1.1E-06 7E-10 53.2 25.8 405 1-436 3-522 (522) 205 protein:vir:79703 Length: 505 98.3 1.4E-06 8.6E-10 52.7 24.9 391 1-434 3-505 (505) 206 protein:vir:94546 Length: 506 98.2 2.3E-06 1.4E-09 51.5 22.6 409 1-445 2-506 (506) 207 protein:vir:98883 Length: 517 98.2 3.3E-06 2E-09 50.7 23.1 407 1-440 3-517 (517) 208 protein:vir:96839 Length: 474 98.1 4.6E-06 2.8E-09 49.8 30.4 388 1-442 27-474 (474) 209 protein:vir:9815 Length: 500 # 98.0 6.7E-06 4.2E-09 48.9 25.6 396 1-434 3-500 (500) 210 protein:vir:3028 Length: 500 # 98.0 6.7E-06 4.2E-09 48.9 25.6 396 1-434 3-500 (500) 211 protein:vir:107112 Length: 478 98.0 7E-06 4.3E-09 48.9 30.0 395 1-434 16-478 (478) 212 protein:vir:78907 Length: 518 98.0 7.7E-06 4.8E-09 48.6 28.5 400 2-433 1-518 (518) 213 protein:vir:78083 Length: 537 97.8 1.7E-05 1.1E-08 46.7 35.4 413 1-442 21-537 (537) 214 protein:vir:96179 Length: 468 97.7 2.6E-05 1.6E-08 45.8 29.6 378 1-428 30-468 (468) 215 protein:vir:4073 Length: 279 # 97.4 2.5E-06 1.5E-09 51.3 8.7 271 54-389 1-279 (279) 216 protein:vir:9922 Length: 489 # 97.4 8.5E-05 5.3E-08 42.9 25.2 400 1-435 20-489 (489) 217 protein:vir:105461 Length: 470 97.0 0.00021 1.3E-07 40.8 27.5 383 1-434 9-470 (470) 218 protein:vir:102950 Length: 471 97.0 0.00023 1.5E-07 40.5 27.9 386 1-431 9-471 (471) 219 protein:vir:104892 Length: 558 96.3 0.00078 4.9E-07 37.6 26.4 438 1-454 1-555 (558) 220 protein:vir:105154 Length: 525 95.8 0.0014 8.6E-07 36.2 18.5 410 1-451 27-525 (525) 221 protein:vir:101494 Length: 527 95.8 0.0015 9.4E-07 36.1 24.8 392 1-437 1-527 (527) 222 protein:vir:102239 Length: 527 95.7 0.0016 9.9E-07 35.9 24.9 392 1-437 1-527 (527) 223 protein:vir:80165 Length: 651 95.4 0.002 1.3E-06 35.3 21.7 418 1-454 25-646 (651) 224 protein:vir:104500 Length: 537 95.1 0.0027 1.7E-06 34.6 26.1 427 1-435 1-537 (537) 225 protein:vir:95149 Length: 501 94.6 0.0041 2.5E-06 33.7 23.8 403 1-440 1-501 (501) 226 protein:vir:103177 Length: 533 92.7 0.01 6.3E-06 31.5 25.4 426 1-448 1-533 (533) 227 protein:vir:80453 Length: 535 92.0 0.013 8.3E-06 30.8 23.6 408 1-437 7-535 (535) 228 protein:vir:102330 Length: 451 90.5 0.02 1.3E-05 29.9 28.0 381 1-430 9-451 (451) 229 protein:vir:102668 Length: 547 89.7 0.025 1.5E-05 29.4 21.1 378 1-454 23-535 (547) 230 protein:vir:98265 Length: 524 89.7 0.025 1.5E-05 29.4 24.2 404 1-432 3-524 (524) 231 protein:vir:106282 Length: 521 89.2 0.027 1.7E-05 29.1 25.9 405 1-432 5-521 (521) 232 protein:vir:106999 Length: 564 89.2 0.028 1.7E-05 29.1 26.7 428 1-438 1-564 (564) 233 protein:vir:94709 Length: 522 88.6 0.032 2E-05 28.8 21.1 407 1-446 15-522 (522) 234 protein:vir:94956 Length: 452 87.2 0.04 2.5E-05 28.2 28.0 376 2-435 1-452 (452) 235 protein:vir:7017 Length: 515 # 87.2 0.04 2.5E-05 28.2 19.2 402 1-454 18-514 (515) 236 protein:vir:101806 Length: 516 85.9 0.05 3.1E-05 27.7 25.8 402 1-432 3-516 (516) 237 protein:vir:101189 Length: 516 85.9 0.05 3.1E-05 27.7 25.8 402 1-432 3-516 (516) 238 protein:vir:97265 Length: 513 85.1 0.056 3.4E-05 27.5 29.1 414 1-443 1-513 (513) 239 protein:vir:108049 Length: 524 85.0 0.056 3.5E-05 27.4 23.9 405 1-432 7-524 (524) 240 protein:vir:103330 Length: 517 84.1 0.063 3.9E-05 27.2 19.4 391 1-454 15-508 (517) 241 protein:vir:6596 Length: 521 # 82.4 0.077 4.8E-05 26.7 22.4 401 1-417 1-521 (521) 242 protein:vir:78393 Length: 489 81.7 0.083 5.2E-05 26.5 23.9 399 1-434 1-489 (489) 243 protein:vir:78696 Length: 542 81.6 0.084 5.2E-05 26.5 22.0 405 1-435 1-542 (542) 244 protein:vir:97376 Length: 320 80.5 0.095 5.9E-05 26.2 14.4 311 1-407 3-320 (320) 245 protein:vir:103765 Length: 549 73.0 0.18 0.00011 24.7 18.6 415 1-435 1-549 (549) 246 protein:vir:81017 Length: 521 72.1 0.19 0.00012 24.6 23.2 401 1-417 1-521 (521) 247 protein:vir:6896 Length: 523 # 70.2 0.21 0.00013 24.3 23.2 405 1-417 5-523 (523) 248 protein:vir:94599 Length: 641 67.9 0.25 0.00015 23.9 21.1 413 1-454 25-608 (641) 249 protein:vir:7208 Length: 524 # 66.7 0.26 0.00016 23.8 23.5 405 1-417 5-524 (524) 250 protein:vir:103458 Length: 524 66.1 0.27 0.00017 23.7 23.5 405 1-417 5-524 (524) 251 protein:vir:3361 Length: 535 # 65.8 0.28 0.00017 23.6 18.9 414 1-440 1-535 (535) 252 protein:vir:100598 Length: 516 61.4 0.35 0.00022 23.1 26.6 401 1-432 3-516 (516) 253 protein:vir:7321 Length: 556 # 61.0 0.36 0.00022 23.0 17.1 420 1-454 1-550 (556) 254 protein:vir:5665 Length: 511 # 57.7 0.43 0.00027 22.6 25.7 401 2-433 1-511 (511) 255 protein:vir:94572 Length: 535 49.1 0.65 0.0004 21.6 19.2 416 1-454 18-535 (535) 256 protein:vir:99672 Length: 532 46.5 0.73 0.00046 21.3 17.2 381 1-440 40-532 (532) 257 protein:vir:2198 Length: 536 # 45.1 0.78 0.00049 21.2 20.4 415 1-437 1-536 (536) 258 protein:vir:7430 Length: 563 # 42.7 0.87 0.00054 20.9 24.2 425 1-446 1-563 (563) 259 protein:vir:105641 Length: 516 42.1 0.9 0.00056 20.8 22.5 387 1-435 19-516 (516) 260 protein:vir:8846 Length: 705 # 41.2 0.94 0.00058 20.7 8.9 408 1-454 151-627 (705) 261 protein:vir:8883 Length: 543 # 38.1 1.1 0.00067 20.4 19.3 406 1-454 1-510 (543) 262 protein:vir:572 Length: 506 # 37.0 1.1 0.00071 20.3 16.2 413 1-437 1-506 (506) 263 protein:vir:107822 Length: 555 33.9 1.3 0.00082 19.9 20.6 404 1-454 1-532 (555) 264 protein:vir:98506 Length: 555 33.9 1.3 0.00082 19.9 20.6 404 1-454 1-532 (555) 265 protein:vir:107404 Length: 555 33.9 1.3 0.00082 19.9 20.6 404 1-454 1-532 (555) 266 protein:vir:10447 Length: 536 33.9 1.3 0.00082 19.9 20.1 416 1-437 1-536 (536) 267 protein:vir:95014 Length: 491 33.1 1.4 0.00085 19.8 25.7 396 1-429 1-491 (491) 268 protein:vir:95315 Length: 559 32.5 1.4 0.00088 19.7 19.1 421 1-454 1-554 (559) 269 protein:vir:96988 Length: 516 30.6 1.6 0.00097 19.5 21.5 403 1-454 19-515 (516) 270 protein:vir:100039 Length: 522 29.8 1.6 0.001 19.4 21.2 400 1-454 6-522 (522) 271 protein:vir:1538 Length: 535 # 29.0 1.7 0.0011 19.3 20.1 417 1-444 1-535 (535) 272 protein:vir:101418 Length: 569 28.1 1.8 0.0011 19.2 18.2 433 1-454 29-564 (569) No 1 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=100.00 E-value=1.2e-115 Score=650.65 Aligned_cols=454 Identities=100% Similarity=1.447 Sum_probs=437.4 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) |||+|||.++.++++.+.+..+|...+++++.++++.+.++..|+.+.|+++++|++||++||++||++||++|+.+++| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~g 80 (454) T protein:vir:93 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) T ss_pred CCCccccCcccccccccccchhhhhhhhhhhhhhcchhhcCcccChHHhhccHHHHHHHHHHHHhhccCceEEEEeccCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) ...+..+|++++|+.+||++||+.+||+.++.+++++||+|++++|+.+|++.+|+|++|++|++..+.+|...|+|... T Consensus 81 ~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~y~~~~~ 160 (454) T protein:vir:93 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) T ss_pred ccchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCcceEEEEcCCCcEEEEEEec Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999887 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~ 240 (454) .....+....+++++|||++++.+.++++|+||+..+...|.+..++++++.++|+||++|+++|++++.+++++.++++ T Consensus 161 ~~~~~~~~~~~~~~eViH~k~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~ 240 (454) T protein:vir:93 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) T ss_pred cccccceeEEecCcceEEeccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecCCCCCHHHHHHHH Confidence 77766778889999999999988899999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQC 320 (454) Q Consensus 241 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~ 320 (454) +.|++.++|.|+|+++||++|++|++++++++|+||+|++++.+++||++|||||++||..++++++|+|++...|+++| T Consensus 241 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~ 320 (454) T protein:vir:93 241 SNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQC 320 (454) T ss_pred HHHHHHhcccccCCceeccCCceEEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCcchhHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccccccccccc Q lcl|Aclame:pro 321 LQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYS 400 (454) Q Consensus 321 i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~ 400 (454) |.|+++.|+++||++|+++.+++++|+++.+++.|.+++++.+.+++++|+||+||+|+++|+||+||||+++++.++++ T Consensus 321 l~P~~~~ie~~ln~~L~~~~~~~~~f~~~~ll~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~~~~~~~~~~ 400 (454) T protein:vir:93 321 LQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYS 400 (454) T ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeeccCccc Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccCCCccCcccCCCCCCcccCcccccccccccHHHHHHHHHhcC Q lcl|Aclame:pro 401 LEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDAVKAMFRGILKK 454 (454) Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a~~~~~~~~ 454 (454) ++..++.+..+.+.+..++....+.+.+..|++++..|.+.|++++++|++||| T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~d~~~~~~~~~~~~ 454 (454) T protein:vir:93 401 LEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDAVKAMFRGILKK 454 (454) T ss_pred hHhhhccCcccCCCCCCccCCCCCCCCCCCCCCCCccCCccchhhhhhhhhhcC Confidence 999888888888777778887888888899999999999999999999999999 No 2 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=100.00 E-value=1.4e-96 Score=546.08 Aligned_cols=422 Identities=21% Similarity=0.276 Sum_probs=356.1 Q ss_pred Ccchhhhh----cccccccc-ccCcccch-hhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEE Q lcl|Aclame:pro 1 MWNLLRRT----RKNQKSGR-DVREAGWT-SLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLM 74 (454) Q Consensus 1 m~n~f~r~----~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~ 74 (454) |+.-|.+. .+.++.+. ......+. +.-..+...+++.+.++..|+.+.|+++++|++||++||++||++||++| T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~v~~~~al~~~~V~~~i~~ia~~ia~lp~~~~ 80 (434) T protein:vir:43 1 MSKSLGKVLSSATSAPRSSLFGWGGKTIRLTDGAFWSQFLGRESSSGKKVTVDKAMKLSAVWACVRLISTSVAGLPLGVY 80 (434) T ss_pred CccchhhhhhhcccccchhhhcccccccccCchHHHHHHhcCCccCCceechhhhhccHHHHHHHHHHHHhhhhCceEEE Confidence 66655443 33222210 00000110 00111222334556678899999999999999999999999999999999 Q ss_pred eccccccceehhhh-HHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCce Q lcl|Aclame:pro 75 QTDAQGIRRETRRG-DIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEV 153 (454) Q Consensus 75 ~~~~~~~~~~~~~~-~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~ 153 (454) +.+++|......+| ++.+|+.+||++||+.+||+.++.+++++||+|+++.++ +|++++|+||+|++|++..+.+|.. T Consensus 81 ~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~~-~G~~~~L~~l~p~~v~~~~~~~g~~ 159 (434) T protein:vir:43 81 ERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRRA-AGRPAALDFLLPSRVDLECDENGRL 159 (434) T ss_pred EEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcceEEEEcCCCeE Confidence 98887766554444 455666899999999999999999999999999998776 6999999999999999999999888 Q ss_pred eeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCH Q lcl|Aclame:pro 154 FYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITE 233 (454) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~ 233 (454) .|+++.. .+..+.+++++|||++.. +.++++|+||+..+...|....++++++.++|+||++|++++++++.+++ T Consensus 160 ~y~~~~~----~g~~~~~~~~eVih~~~~-~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~ 234 (434) T protein:vir:43 160 KYFYTTK----KGARREIERTNMLHIPAF-TLDGRIGLSAIRYGVDVFGSVMSAEDAANGTFKNGLLPTVAFKVDRILQP 234 (434) T ss_pred EEEEEec----CceEEEEccccEEEecCc-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEecCCCCCH Confidence 8776543 345688999999999965 67889999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccccc--ccCHHH Q lcl|Aclame:pro 234 ENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPS--SDNVEA 311 (454) Q Consensus 234 e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~--~~n~e~ 311 (454) ++.+++++.|++..++.|+|+++||++|++|++++++++|+||+|.+++++++||++|||||++||..+.++ ++|.|+ T Consensus 235 e~~~~~r~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~s~~e~ 314 (434) T protein:vir:43 235 AQREEFREYVKSVSGAMNSGRSPVLEQGITPETIGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDKGSNWGTGLEQ 314 (434) T ss_pred HHHHHHHHHHHHhcCccccCCccccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCccccchHHH Confidence 999999999988777789999999999999999999999999999999999999999999999999876544 789999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcc---cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCC Q lcl|Aclame:pro 312 LEQQYYSQCLQTLIESIELLLDEALETGE---NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAG 388 (454) Q Consensus 312 ~~~~~~~~~i~P~~~~ie~~l~~~l~~~~---~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~ 388 (454) +...|+++||.|++.+||++||++|+++. +++++||++.+++.|.+++++.+.+++++|+||+||+|+++|+||+|| T Consensus 315 ~~~~f~~~~L~P~~~~ie~~ln~kL~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~p~~g 394 (434) T protein:vir:43 315 QMLAFLTFSISSITNQIQQCVNKRLLTAPERIRYYAEFSLEGFLKADSAGRAAWYSTMAQNGFMTRNEGRRKENLPELPG 394 (434) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhhhcCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 99999999999999999999999999764 457899999999999999999999999999999999999999999999 Q ss_pred ccccccccccccccccccccccccCCCccCcccCCCCCCc Q lcl|Aclame:pro 389 GDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVA 428 (454) Q Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (454) ||.+++++|+++++..++.+..+....+.....+.+++.+ T Consensus 395 gD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (434) T protein:vir:43 395 GDILTVQSNLVPIDQLGQSNKSQAVRAALMNWFSQPEPQE 434 (434) T ss_pred CCeEeeccCccchhhhhccCCCcchhhhhhccCCCCCCCC Confidence 9999999999999887776666655444444333333222 No 3 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=100.00 E-value=1.4e-96 Score=546.06 Aligned_cols=417 Identities=22% Similarity=0.351 Sum_probs=352.0 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) |||+++|+.. +.. ..... ..++.. +.+.+.++..++.+.|+++++|++||++||+++|++||++|+..++| T Consensus 7 ~f~~~~r~~~-~~~--~~~~~-----~~~~~~-~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~l~~~~~~~~~~~ 77 (429) T protein:vir:10 7 FFNFEKRQTS-QVI--ELNKD-----DEKLLE-WLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 77 (429) T ss_pred hhcccccCcc-ccc--ccCCC-----hHHHHH-HhcCCCCcceechhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 6665554321 111 11111 111111 22345567889999999999999999999999999999999998888 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEe-c Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRIT-P 159 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~-~ 159 (454) ......+++.++|+.+||++||+++||+.++.+++++||+|++++|+..|++++|||++|++|++..++.+...+.+. . T Consensus 78 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~~~~~~ 157 (429) T protein:vir:10 78 IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 157 (429) T ss_pred eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 777777777777888999999999999999999999999999999999999999999999999999987664322110 0 Q ss_pred cccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHH Q lcl|Aclame:pro 160 DRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKL 239 (454) Q Consensus 160 ~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~ 239 (454) +.....+....+++++|||+++..+.++++|+||+..+...|....++++++.++|+||+.|+++|+++..+++++.+++ T Consensus 158 ~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~~e~~~~~ 237 (429) T protein:vir:10 158 YVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAKKVF 237 (429) T ss_pred EEEccCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHHHH Confidence 01122345678999999999998899999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHH Q lcl|Aclame:pro 240 KSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYS 318 (454) Q Consensus 240 ~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~ 318 (454) ++.|++.++| .|+|+++|+++|++++++++++.|+|++|.+++.+++||++|||||.+||+.+.++++|+|++...|++ T Consensus 238 ~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~sn~e~~~~~f~~ 317 (429) T protein:vir:10 238 RENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFYT 317 (429) T ss_pred HHHHHHHhccccccCceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHH Confidence 9999999987 689999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhcCcc----cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccccc Q lcl|Aclame:pro 319 QCLQTLIESIELLLDEALETGE----NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYL 394 (454) Q Consensus 319 ~~i~P~~~~ie~~l~~~l~~~~----~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~ 394 (454) .||.|+++.|+++||++|++.. +++++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+||||.+++ T Consensus 318 ~~l~P~~~~ie~~ln~kl~~~~~~~~g~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~ 397 (429) T protein:vir:10 318 DTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLLV 397 (429) T ss_pred HHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeee Confidence 9999999999999999998753 468899999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 395 QQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) ++|+++++..++..... +.. ....+.+.++++ T Consensus 398 ~~n~~~~d~~~~~~~k~-g~~------~~~~~~~~~e~~ 429 (429) T protein:vir:10 398 NGNMLPIDMAGQAYLKG-GDT------NGEVSKEGNEGN 429 (429) T ss_pred cccccchhhccccccCC-CCC------CCCCCCCCCCCC Confidence 99999997655432211 111 111122222222 No 4 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=100.00 E-value=3.6e-96 Score=543.86 Aligned_cols=421 Identities=21% Similarity=0.336 Sum_probs=351.7 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) ||+++++.++-.+++... ........+++.. +.+.+.++..++.+.++++++|++||++||++||++|+++++..+++ T Consensus 3 ~~~r~~~~~~~~~r~~~~-~~~~~~~~~~~~~-~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 80 (432) T protein:vir:10 3 IVDSVKKFFNFEKRQTSQ-VIELNKDDEKLLE-WLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 80 (432) T ss_pred hHHHHHHhcCccccCccc-ccccCCchHHHHH-HhCCCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 555543332221111110 0001111112222 22345567889999999999999999999999999999999998888 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceee----E Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFY----R 156 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~----~ 156 (454) ......+++..+|+.+||++||+.+||+.++.+++++||+|++++|+..|++++||||+|++|++..+..+...+ + T Consensus 81 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~ 160 (432) T protein:vir:10 81 IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 160 (432) T ss_pred eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 777666777777778999999999999999999999999999999999999999999999999999887653321 1 Q ss_pred EeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHH Q lcl|Aclame:pro 157 ITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENA 236 (454) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~ 236 (454) |.. ...+....+++++|||++++.+.++++|+||+..+...|....++++++.++|+||+.|+++|+++..+++++. T Consensus 161 y~~---~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~ 237 (432) T protein:vir:10 161 YVV---NTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAK 237 (432) T ss_pred EEE---ecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHH Confidence 111 12345678999999999988889999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH Q lcl|Aclame:pro 237 KKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ 315 (454) Q Consensus 237 ~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~ 315 (454) +++++.|++.++| .|+|+++|+++|+++++++++++|+||++.+++++++||++|||||++||..+.++++|+|++... T Consensus 238 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~ 317 (432) T protein:vir:10 238 KVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQ 317 (432) T ss_pred HHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHH Confidence 9999999999988 689999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcc----cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccc Q lcl|Aclame:pro 316 YYSQCLQTLIESIELLLDEALETGE----NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDA 391 (454) Q Consensus 316 ~~~~~i~P~~~~ie~~l~~~l~~~~----~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~ 391 (454) |+++||.|++++||++||++|++.. +.+++||++.+++.|.+++++++.+++++|++|+||+|+++|+||+||||. T Consensus 318 ~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~ 397 (432) T protein:vir:10 318 FYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDR 397 (432) T ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe Confidence 9999999999999999999999753 457899999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 392 LYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) +++++|+++++...+....... . ....+.+.++++ T Consensus 398 ~~~~~n~~~~~~~~~~~~k~~~-~------~~~~~~~~~~~~ 432 (432) T protein:vir:10 398 LLVNGNMLPIDMAGQAYLKGGD-T------NGEVSKEGNEGN 432 (432) T ss_pred EeecccccchhhccccccCCCC-C------CCCCCCCCCCCC Confidence 9999999999876553222111 1 111122222222 No 5 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=100.00 E-value=3.6e-96 Score=543.86 Aligned_cols=421 Identities=21% Similarity=0.336 Sum_probs=351.7 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) ||+++++.++-.+++... ........+++.. +.+.+.++..++.+.++++++|++||++||++||++|+++++..+++ T Consensus 3 ~~~r~~~~~~~~~r~~~~-~~~~~~~~~~~~~-~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 80 (432) T protein:vir:10 3 IVDSVKKFFNFEKRQTSQ-VIELNKDDEKLLE-WLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 80 (432) T ss_pred hHHHHHHhcCccccCccc-ccccCCchHHHHH-HhCCCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 555543332221111110 0001111112222 22345567889999999999999999999999999999999998888 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceee----E Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFY----R 156 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~----~ 156 (454) ......+++..+|+.+||++||+.+||+.++.+++++||+|++++|+..|++++||||+|++|++..+..+...+ + T Consensus 81 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~ 160 (432) T protein:vir:10 81 IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 160 (432) T ss_pred eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 777666777777778999999999999999999999999999999999999999999999999999887653321 1 Q ss_pred EeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHH Q lcl|Aclame:pro 157 ITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENA 236 (454) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~ 236 (454) |.. ...+....+++++|||++++.+.++++|+||+..+...|....++++++.++|+||+.|+++|+++..+++++. T Consensus 161 y~~---~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~ 237 (432) T protein:vir:10 161 YVV---NTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAK 237 (432) T ss_pred EEE---ecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHH Confidence 111 12345678999999999988889999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH Q lcl|Aclame:pro 237 KKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ 315 (454) Q Consensus 237 ~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~ 315 (454) +++++.|++.++| .|+|+++|+++|+++++++++++|+||++.+++++++||++|||||++||..+.++++|+|++... T Consensus 238 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~ 317 (432) T protein:vir:10 238 KVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQ 317 (432) T ss_pred HHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHH Confidence 9999999999988 689999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcc----cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccc Q lcl|Aclame:pro 316 YYSQCLQTLIESIELLLDEALETGE----NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDA 391 (454) Q Consensus 316 ~~~~~i~P~~~~ie~~l~~~l~~~~----~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~ 391 (454) |+++||.|++++||++||++|++.. +.+++||++.+++.|.+++++++.+++++|++|+||+|+++|+||+||||. T Consensus 318 ~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~ 397 (432) T protein:vir:10 318 FYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDR 397 (432) T ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe Confidence 9999999999999999999999753 457899999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 392 LYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) +++++|+++++...+....... . ....+.+.++++ T Consensus 398 ~~~~~n~~~~~~~~~~~~k~~~-~------~~~~~~~~~~~~ 432 (432) T protein:vir:10 398 LLVNGNMLPIDMAGQAYLKGGD-T------NGEVSKEGNEGN 432 (432) T ss_pred EeecccccchhhccccccCCCC-C------CCCCCCCCCCCC Confidence 9999999999876553222111 1 111122222222 No 6 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=100.00 E-value=3.6e-96 Score=543.86 Aligned_cols=421 Identities=21% Similarity=0.336 Sum_probs=351.7 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) ||+++++.++-.+++... ........+++.. +.+.+.++..++.+.++++++|++||++||++||++|+++++..+++ T Consensus 3 ~~~r~~~~~~~~~r~~~~-~~~~~~~~~~~~~-~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 80 (432) T protein:vir:10 3 IVDSVKKFFNFEKRQTSQ-VIELNKDDEKLLE-WLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 80 (432) T ss_pred hHHHHHHhcCccccCccc-ccccCCchHHHHH-HhCCCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 555543332221111110 0001111112222 22345567889999999999999999999999999999999998888 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceee----E Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFY----R 156 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~----~ 156 (454) ......+++..+|+.+||++||+.+||+.++.+++++||+|++++|+..|++++||||+|++|++..+..+...+ + T Consensus 81 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~ 160 (432) T protein:vir:10 81 IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 160 (432) T ss_pred eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 777666777777778999999999999999999999999999999999999999999999999999887653321 1 Q ss_pred EeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHH Q lcl|Aclame:pro 157 ITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENA 236 (454) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~ 236 (454) |.. ...+....+++++|||++++.+.++++|+||+..+...|....++++++.++|+||+.|+++|+++..+++++. T Consensus 161 y~~---~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~ 237 (432) T protein:vir:10 161 YVV---NTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAK 237 (432) T ss_pred EEE---ecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHH Confidence 111 12345678999999999988889999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH Q lcl|Aclame:pro 237 KKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ 315 (454) Q Consensus 237 ~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~ 315 (454) +++++.|++.++| .|+|+++|+++|+++++++++++|+||++.+++++++||++|||||++||..+.++++|+|++... T Consensus 238 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~ 317 (432) T protein:vir:10 238 KVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQ 317 (432) T ss_pred HHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHH Confidence 9999999999988 689999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcc----cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccc Q lcl|Aclame:pro 316 YYSQCLQTLIESIELLLDEALETGE----NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDA 391 (454) Q Consensus 316 ~~~~~i~P~~~~ie~~l~~~l~~~~----~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~ 391 (454) |+++||.|++++||++||++|++.. +.+++||++.+++.|.+++++++.+++++|++|+||+|+++|+||+||||. T Consensus 318 ~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~ 397 (432) T protein:vir:10 318 FYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDR 397 (432) T ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe Confidence 9999999999999999999999753 457899999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 392 LYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) +++++|+++++...+....... . ....+.+.++++ T Consensus 398 ~~~~~n~~~~~~~~~~~~k~~~-~------~~~~~~~~~~~~ 432 (432) T protein:vir:10 398 LLVNGNMLPIDMAGQAYLKGGD-T------NGEVSKEGNEGN 432 (432) T ss_pred EeecccccchhhccccccCCCC-C------CCCCCCCCCCCC Confidence 9999999999876553222111 1 111122222222 No 7 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=100.00 E-value=5.6e-96 Score=542.79 Aligned_cols=412 Identities=24% Similarity=0.370 Sum_probs=349.1 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) || |+++++.++++.. ....|...+.+. ..+.+.++..|+.+.|+++++|++||++||++||++||++|+.+++| T Consensus 1 m~--~~~~~~~~~~~~s-~~~~w~~~~~~~---~~~~~~~g~~vt~~~al~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~g 74 (421) T protein:vir:10 1 MF--IPQMFEGKKRSVS-GGGFWEAMLGGV---RSSHSKAGVMITPETALALSAVRACVTLLAESVAQLPVELYRRDKNG 74 (421) T ss_pred CC--CcchhcccccccC-cchhhHHHhhhh---ccCcccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcCCC Confidence 66 3333333333321 223344444333 23455678899999999999999999999999999999999988877 Q ss_pred cceeh-hhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEec Q lcl|Aclame:pro 81 IRRET-RRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITP 159 (454) Q Consensus 81 ~~~~~-~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~ 159 (454) ..... .|+.+.+|+.+||++||+.+||+.++.+++++||||++++|+.+|++.+||||+|+.|++..+.+|...|++.. T Consensus 75 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~g~~~y~~~~ 154 (421) T protein:vir:10 75 GRQRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKGYPKELIPINPKKVIVLKGPDGMPYYEIPE 154 (421) T ss_pred ceeecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEECCCceEEEEEcC Confidence 66544 45556677789999999999999999999999999999999999999999999999999999998887766532 Q ss_pred cccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccC----CHHH Q lcl|Aclame:pro 160 DRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI----TEEN 235 (454) Q Consensus 160 ~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~----s~e~ 235 (454) .+ ..++.++|||++++ +.++++|+||+..+...|....++++++.++|+||++|+++|+++... ++++ T Consensus 155 ~g-------~~~~~~eiih~~~~-~~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~e~ 226 (421) T protein:vir:10 155 IG-------ETLPMRMMHHVKVF-SLDGYIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSGVIERPKEAPAIKSQEK 226 (421) T ss_pred CC-------cEEchhhEEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCccCccCCHHH Confidence 21 25889999999965 578899999999999999999999999999999999999999988654 8999 Q ss_pred HHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH Q lcl|Aclame:pro 236 AKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ 314 (454) Q Consensus 236 ~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~ 314 (454) .+++++.|++.++| .|+|+++||++|++|++++++++|+||+|.+++++++||++|||||.+||..+.++++|+|++.. T Consensus 227 ~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~ 306 (421) T protein:vir:10 227 IDQLLAKWTDRYSGINNMFSVALLQEGMSYKQMSQDNEKAQLLQSRQWGVEEVCRLYKIPPHMVQMLAKATNNNIEHQGL 306 (421) T ss_pred HHHHHHHHHHHhcCccccCcceecCCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCcCCccccHHHHHH Confidence 99999999999987 68999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcc---cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccc Q lcl|Aclame:pro 315 QYYSQCLQTLIESIELLLDEALETGE---NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDA 391 (454) Q Consensus 315 ~~~~~~i~P~~~~ie~~l~~~l~~~~---~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~ 391 (454) .|+++||.|++.+||++||++|+++. +.+++||++.+++.|.+++++.+.+++++|+||+||+|+++|+||+||||. T Consensus 307 ~f~~~tl~P~~~~ie~~ln~kL~~~~~~~~~~v~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~ 386 (421) T protein:vir:10 307 QFVMYTLLAWLKRHEGALQRDLLLPSERRDLYIEFNVSGLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLPPIAGGDK 386 (421) T ss_pred HHHHHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce Confidence 99999999999999999999999764 457899999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccccccccccCCCccCcccCCCCCCcccCcccccccc Q lcl|Aclame:pro 392 LYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITET 439 (454) Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 439 (454) +++|.|+++++.....+..+... +..+.++..+++ T Consensus 387 ~~~~~n~~~~~~~~~~~~~~~~~-------------~~~e~d~~~~~~ 421 (421) T protein:vir:10 387 YLTPLNMVDSAQIIPGDKKPTAQ-------------QMAEIDTILSRT 421 (421) T ss_pred eeeccccccccccccCCCCcccc-------------cCcccccccccC Confidence 99999998776554433222111 111122222222 No 8 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=100.00 E-value=5.4e-96 Score=542.86 Aligned_cols=401 Identities=21% Similarity=0.330 Sum_probs=342.0 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +|++|++++.....+.+.....+ .+.+.+.++..|+.+.|+++++|++||++||++||++|+++|+..+++ T Consensus 18 ~~~~lf~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~vs~~~al~~~~v~~cv~~Ia~~iA~lp~~v~~~~~~~ 88 (424) T protein:vir:45 18 LLDALFRSKSLENPSTPITGDAV---------DTDGLFRADVYVSPETAMKLAAVYSCIYVLSSSLAQMPLHVMRRHKGK 88 (424) T ss_pred HHHhhccccCCCCCccccchhhh---------hhhccccCCceechHHhhccHHHHHHHHHHHHHHhhCceEEEEecCCc Confidence 77776554443333333221111 012345567789999999999999999999999999999999887666 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) ..+...|+.+.+|+.+||++||+++||+.++.+++++||+|++++|+.+|.+++|+|++|+.|++..+. +...|.+... T Consensus 89 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~i~~~~-~~~~y~~~~~ 167 (424) T protein:vir:45 89 VEPARDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRRGEVISLDCCMPWETTLMNTG-GRYTYGLYNE 167 (424) T ss_pred eeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEEcC-CeEEEEEEec Confidence 666666666777778999999999999999999999999999999999999999999999999987754 5566665432 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~ 240 (454) . ....+++++|||++.. +.++++|+||+..+...|....++++++.++|+||++|+++|+++..+++++.++++ T Consensus 168 ~-----~~~~~~~~eVih~r~~-~~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~ 241 (424) T protein:vir:45 168 Y-----GAFAISPDDMIHIRAL-GNNQKMGLSPIMQHAETIGMGMSGQKYTESFFSGNARPAGIVSVKSGLNKESWGWLK 241 (424) T ss_pred C-----ceEEECcccEEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHH Confidence 2 2457999999999965 468999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHhcC--cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTG--ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYS 318 (454) Q Consensus 241 ~~~~~~~~g--~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~ 318 (454) +.|++.++| +|+|+++|+++|++|++++++++|+||+|.+++++++||++|||||++||..++++++|+|++.+.|++ T Consensus 242 ~~~~~~~~g~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~eq~~~~f~~ 321 (424) T protein:vir:45 242 DQWQKASQALRRQENKTMLLPADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLEKATFSNISAQAIQFVR 321 (424) T ss_pred HHHHHHhccccccCCceeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHH Confidence 999999976 589999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhcCcc----cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccccc Q lcl|Aclame:pro 319 QCLQTLIESIELLLDEALETGE----NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYL 394 (454) Q Consensus 319 ~~i~P~~~~ie~~l~~~l~~~~----~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~ 394 (454) +||.|+++.||++||++|+++. +++++||++.+++.|.+++++.+.+++++|+||+||+|+++|+||+||||.+++ T Consensus 322 ~tL~P~~~~ie~~ln~kLl~~~e~~~g~~i~fd~~~llr~d~~~r~~~~~~~~~~g~~T~NE~R~~~gl~pi~ggD~~~~ 401 (424) T protein:vir:45 322 YTMMPWVTNWEQELNRRLFTRAELAAGYYVRFNLTGLLRGTPQERAQFYHFAITDGWMSRNEARAFEDMNPVEGLDEMLV 401 (424) T ss_pred HHHHHHHHHHHHHHHHhcCChhhhcCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeee Confidence 9999999999999999999764 467999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccccccccCCCccCcccCCCCCCcccC Q lcl|Aclame:pro 395 QQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASD 431 (454) Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 431 (454) +.|+.+..+.... +. .. +..+ +| T Consensus 402 ~~n~~~~~~~~~~--~~----~~-------~~~~-~~ 424 (424) T protein:vir:45 402 SVNAANPAGDFKP--PK----ND-------EGKT-NE 424 (424) T ss_pred cccccccccccCC--CC----CC-------CCCC-CC Confidence 9888653211000 00 00 0000 00 No 9 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=100.00 E-value=8.9e-96 Score=541.68 Aligned_cols=401 Identities=23% Similarity=0.289 Sum_probs=344.7 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) |||.|+.++...+...+.... ....+ ....+..+..|+.+.|+++++|++||++||+++|++||++|+..++| T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp~~~~~~~~~~ 88 (424) T protein:vir:18 16 WWARLQSWFVGGRLVTPNQGS-QTGPV------SAHGHLGDSSINDERILQISTVWRCVSLISTLTACLPLDVFETDQND 88 (424) T ss_pred hHHHHHhhhcccccccccccc-ccccc------ccccccccccccHHHhhccHHHHHHHHHHHHhhccCceEEEEeecCC Confidence 888877665433332221111 11111 12223456779999999999999999999999999999999987776 Q ss_pred ccee--hhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEe Q lcl|Aclame:pro 81 IRRE--TRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRIT 158 (454) Q Consensus 81 ~~~~--~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~ 158 (454) .... ..|+++.+|+.+||++||+.+||+.++.+++++||+|++++|+.+|++++|||++|++|++..+. +...|.|. T Consensus 89 ~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~pl~~~~V~v~~~~-~~~~y~~~ 167 (424) T protein:vir:18 89 NRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANMDVKLVG-KKVVYRYQ 167 (424) T ss_pred ceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcceEEEEcC-CeEEEEEE Confidence 5433 34556666778999999999999999999999999999999999999999999999999998764 56666665 Q ss_pred ccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCcc-CCHHHHH Q lcl|Aclame:pro 159 PDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGS-ITEENAK 237 (454) Q Consensus 159 ~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~-~s~e~~~ 237 (454) .. +..+.|+++||||++..+ .++++|+||+..+...|.+..++++++.++|+||++|+++|+++.. +++++.+ T Consensus 168 ~~-----g~~~~~~~~eIih~r~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~ 241 (424) T protein:vir:18 168 RD-----SEYADFSQKEIFHLKGFG-FTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRS 241 (424) T ss_pred eC-----CeEEEeccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCcCCCHHHHH Confidence 32 355789999999999654 6789999999999999999999999999999999999999999875 6899999 Q ss_pred HHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccc--cCHHHHHHH Q lcl|Aclame:pro 238 KLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS--DNVEALEQQ 315 (454) Q Consensus 238 ~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~--~n~e~~~~~ 315 (454) ++++.|++.++|.|+|+++||++|++|++++++++|+||+|++++++++||++|||||++||..+.+++ +|.|++... T Consensus 242 ~~~~~~~~~~~g~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~ 321 (424) T protein:vir:18 242 QVEENFKEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLG 321 (424) T ss_pred HHHHHHHHHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHH Confidence 999999999999999999999999999999999999999999999999999999999999999887765 899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCccc---ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccc Q lcl|Aclame:pro 316 YYSQCLQTLIESIELLLDEALETGEN---ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDAL 392 (454) Q Consensus 316 ~~~~~i~P~~~~ie~~l~~~l~~~~~---~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~ 392 (454) |+++||.|+++.||++||++|+++.+ ++++||++.+++.|.+++++.+.+++++|+||+||+|+++|+||+||||.+ T Consensus 322 f~~~tl~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGD~~ 401 (424) T protein:vir:18 322 FLQYTLQPYISRWENSIQRWLIPAKDVGRIHAEHNLDGLLRGDSASRAAFMKAMGEAGLRTINEMRRTDNLPPLPGGDVA 401 (424) T ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCee Confidence 99999999999999999999998753 579999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccccccccccCCC Q lcl|Aclame:pro 393 YLQQQNYSLEALSRRDAREDPFA 415 (454) Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~ 415 (454) ++++|+++++..++...+.+..+ T Consensus 402 ~~~~n~~~l~~~~~~~~p~~~ga 424 (424) T protein:vir:18 402 MRQSQYVPITDLGTNKEPRNNGA 424 (424) T ss_pred eeccCccchHhhhccCCCccCCC Confidence 99999999986654322222111 No 10 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=100.00 E-value=3.1e-95 Score=538.70 Aligned_cols=443 Identities=20% Similarity=0.241 Sum_probs=346.4 Q ss_pred chhhhhccccccccccCcccchhhhhhhhhhccccccCC------ccccHHHHHhhHHHHHHHHHHHHhhcccceEEEec Q lcl|Aclame:pro 3 NLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQG------VKADPEAVLSFHAVFACISLISQDIAKMRLRLMQT 76 (454) Q Consensus 3 n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~ 76 (454) -++..... +..+......+++...+...+..+ ..+....|+++|+|++||++||++||++||++|+. T Consensus 1 ~~~~~~~~-------~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~acV~~IA~~iA~lp~~l~~~ 73 (518) T protein:vir:78 1 MLLANGQT-------LSAPAMAELSPQMQDSYYYAPAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFT 73 (518) T ss_pred CcccCcee-------eccchhhhhhhhhhhcccccceeceecccccchhhHHhhhhHHHHHHHHHHHHhhccCceEEEEE Confidence 11211111 111111122223333333322223 33445678999999999999999999999999998 Q ss_pred cccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCC-ceee Q lcl|Aclame:pro 77 DAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDG-EVFY 155 (454) Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g-~~~~ 155 (454) ++++.... .++++..|+.+||++||+.+||+.++.+++++||+|++++|+.+|.+++||||+|++|++..+.++ ...| T Consensus 74 ~~~~~~~~-~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~Vtv~~~~~~~~~~y 152 (518) T protein:vir:78 74 SGDTETEE-HDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYEY 152 (518) T ss_pred cCCccccc-cchHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEECCCceEEEEcCCCCEEEE Confidence 87766544 667788899999999999999999999999999999999999999999999999999999998654 4445 Q ss_pred EEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHH Q lcl|Aclame:pro 156 RITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEEN 235 (454) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~ 235 (454) +|.. .....+..+.|++++|||++..++.+..+|+||+..+...|....++++++.++|+||++|+++|++++.+++++ T Consensus 153 ~~~~-~~~~~~~~~~~~~~eIiHir~~~~dg~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~~~ls~e~ 231 (518) T protein:vir:78 153 YFQA-GAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRLSPEA 231 (518) T ss_pred EEEe-cCCccceeEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHH Confidence 4443 333445667899999999998777666789999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH Q lcl|Aclame:pro 236 AKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ 314 (454) Q Consensus 236 ~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~ 314 (454) .+++++.|++.++| .|+|+++||++|++|++++++++|+||+|.+++++++||++|||||++||+.+.+|++|+|++.. T Consensus 232 ~~~~k~~~~~~~~G~~nag~~~vL~~G~~~~~l~~~~~d~q~le~r~~~~~eIa~afgVPp~~lg~~~~st~sn~e~~~~ 311 (518) T protein:vir:78 232 QQRLREQFDRAHAGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQMR 311 (518) T ss_pred HHHHHHHHHHHhcCcccCCceeEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHHHH Confidence 99999999999988 68999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCc--ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCC--Ccc Q lcl|Aclame:pro 315 QYYSQCLQTLIESIELLLDEALETG--ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLA--GGD 390 (454) Q Consensus 315 ~~~~~~i~P~~~~ie~~l~~~l~~~--~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~--~~d 390 (454) .|+++||.|++.+|+++||++|++. ...+++||++.+++.|.+++++++.+++++|+||+||+|+++|+||++ +|| T Consensus 312 ~f~~~tL~P~~~~ie~eln~~L~~~~~~~~~~~fd~~~Llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~gl~pie~~~gD 391 (518) T protein:vir:78 312 AFYRDTMAIPIARIQSAMDKYVGQYWVRKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPKAD 391 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc Confidence 9999999999999999999999875 346889999999999999999999999999999999999999999986 799 Q ss_pred ccccccccccccccccccccccCCCccCcccCCC-----CCCcccCcc--cccccccccHHHHHHHHHhcC Q lcl|Aclame:pro 391 ALYLQQQNYSLEALSRRDAREDPFASSGKTASVP-----QAVAASDGN--KAITETEHDAVKAMFRGILKK 454 (454) Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~--~~~~~~~~~~~~a~~~~~~~~ 454 (454) .++++.|+++++.....................+ +.+...... +..+....+..+..-+.++.| T Consensus 392 ~~~v~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (518) T protein:vir:78 392 ELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPASVPGLSPTNSDRSTDSGKTEPRRLMQK 462 (518) T ss_pred eeeecccceecccccccccCCCCCCCCCCCCcccccccccCccccCCCCCcccccccccccccchhcccCC Confidence 9999999999876544322211111111111100 000000000 000001111112222222333 No 11 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=100.00 E-value=2.6e-95 Score=539.13 Aligned_cols=410 Identities=20% Similarity=0.327 Sum_probs=347.1 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +.+|++.++.........+..+... .+ ......++..|+.+.++++++|++||++||+++|++|+++|+..++++ T Consensus 1 Mg~f~~lf~r~~~~~~~~~~~~~~~---~~--~~~~~~~g~~v~~~~al~~~~v~~~i~~Ia~~ia~~p~~~~~~~~~~~ 75 (414) T protein:vir:44 1 MVFFSGLFQRKSDAPVTTPAELADA---IG--LSYDTYTGKQISSQRAMRLTAVFSCVRVLAESVGMLPCNLYHLNGSLK 75 (414) T ss_pred CchhhhhhccCccCcccchhhHhHh---hc--cCccccCCceechhhhhccHHHHHHHHHHHHHhccCceEEEEecCCce Confidence 3333333332222222222222222 21 122344677889999999999999999999999999999999888888 Q ss_pred ceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEeccc Q lcl|Aclame:pro 82 RRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPDR 161 (454) Q Consensus 82 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~ 161 (454) .....++++.+|+.+||++||+++||+.++.+++++||||++++++ +|++.+||||+|..|++..+.++...|++.... T Consensus 76 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~~~~y~~~~~~ 154 (414) T protein:vir:44 76 QRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKA-FGEVAELLPVDPGCVVPKLNSSWEPVYQVTFPD 154 (414) T ss_pred eecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCceEEEEECCCCcEEEEEEecC Confidence 7777777788888999999999999999999999999999999887 589999999999999999998888888776432 Q ss_pred cccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHH Q lcl|Aclame:pro 162 NCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKS 241 (454) Q Consensus 162 ~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~ 241 (454) +....+++++|||++.. +.++++|+||+..+...|+...++++++.++|+||++|+++|+++..+++++.+++++ T Consensus 155 ----g~~~~~~~~evih~~~~-~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~ 229 (414) T protein:vir:44 155 ----GSTDVLSQEDIWHVRTL-TLDGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTEQTLSDQAYERLKK 229 (414) T ss_pred ----ceEEEEccccEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCHHHHHHHHH Confidence 34577999999999965 5688999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHH Q lcl|Aclame:pro 242 NWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQC 320 (454) Q Consensus 242 ~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~ 320 (454) +|++.++| +|+|+++++++|++|++++++++|+||+|.+++++++||++|||||++||+.++++++|+|++...|+++| T Consensus 230 ~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~~~t~~n~e~~~~~~~~~~ 309 (414) T protein:vir:44 230 DFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINYS 309 (414) T ss_pred HHHHHhcCccccCcceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHH Confidence 99999987 68999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHhhcCccc---ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccc Q lcl|Aclame:pro 321 LQTLIESIELLLDEALETGEN---ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQ 397 (454) Q Consensus 321 i~P~~~~ie~~l~~~l~~~~~---~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~ 397 (454) |.|++++||++||++|+++.. ++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+||||.++++.| T Consensus 310 l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n 389 (414) T protein:vir:44 310 LVPYLTRIEQRINTGLVRKSKQGVFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTPMN 389 (414) T ss_pred HHHHHHHHHHHHHhhcCCccccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeccccc Confidence 999999999999999997643 57899999999999999999999999999999999999999999999999999998 Q ss_pred cccccccccccccccCCCccCcccCCCCCCcccCcccccc Q lcl|Aclame:pro 398 NYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAIT 437 (454) Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 437 (454) +............+. ++.+.+++.+ T Consensus 390 ~~~~~~~~~~~~~~~---------------~~~~~d~~~~ 414 (414) T protein:vir:44 390 MTTKPSDGSKAGKQK---------------DNANADETTS 414 (414) T ss_pred ccccCCccccCCCCC---------------CCCCCCCCCC Confidence 876643222111111 1111111111 No 12 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=100.00 E-value=2.4e-95 Score=539.35 Aligned_cols=401 Identities=23% Similarity=0.290 Sum_probs=344.6 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +|+.|+.++......... ...+.. ......+..+..|+.+.|+++++|++||++||+++|++|+++|+..++| T Consensus 16 ~~~~~~~~f~~~~~~~~~-~~~~~~------~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp~~vy~~~~~~ 88 (424) T protein:vir:18 16 WWARLKSWFVGGRLVTPN-QGSQTG------PVSAHGYLGDSSINDERILQISTVWRCVSLISTLTACLPLDVFETDQND 88 (424) T ss_pred hHHHHHhhcccccccccc-chhhcc------ccccccccccccccHHHhhccHHHHHHHHHHHHhhccCceEEEEeccCC Confidence 777776655443332211 111111 1122334556778999999999999999999999999999999988776 Q ss_pred ccee--hhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEe Q lcl|Aclame:pro 81 IRRE--TRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRIT 158 (454) Q Consensus 81 ~~~~--~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~ 158 (454) .... ..|+.+.+|+.+||++||+.+||+.++.+++++||+|++++|+.+|.+++|||++|.+|++..+. +...|.|. T Consensus 89 ~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~-~~~~y~~~ 167 (424) T protein:vir:18 89 NRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANMDVKLVG-KKVVYRYQ 167 (424) T ss_pred ceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcceEEEEcC-CeEEEEEE Confidence 5433 34556667778999999999999999999999999999999999999999999999999998764 56666665 Q ss_pred ccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCcc-CCHHHHH Q lcl|Aclame:pro 159 PDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGS-ITEENAK 237 (454) Q Consensus 159 ~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~-~s~e~~~ 237 (454) .. +....|+++||||+++. +.++++|+||+..+...|..+.++++++.++|+||+.|+++|+++.. +++++.+ T Consensus 168 ~~-----g~~~~~~~~eVihir~~-~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~ 241 (424) T protein:vir:18 168 RD-----SEYADFSQKEIFHLKGF-GFTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRS 241 (424) T ss_pred eC-----CeEEEeccccEEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCcCCCHHHHH Confidence 32 35578999999999965 46889999999999999999999999999999999999999999876 6899999 Q ss_pred HHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccc--cCHHHHHHH Q lcl|Aclame:pro 238 KLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS--DNVEALEQQ 315 (454) Q Consensus 238 ~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~--~n~e~~~~~ 315 (454) ++++.|++.++|.|+|+++||++|++|++++++++|+||+|++++++++||++|||||++||..+.+++ +|.|++... T Consensus 242 ~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~ 321 (424) T protein:vir:18 242 QVEENFKEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLG 321 (424) T ss_pred HHHHHHHHHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHH Confidence 999999999998999999999999999999999999999999999999999999999999998887765 889999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcc---cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccc Q lcl|Aclame:pro 316 YYSQCLQTLIESIELLLDEALETGE---NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDAL 392 (454) Q Consensus 316 ~~~~~i~P~~~~ie~~l~~~l~~~~---~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~ 392 (454) |+++||.|++++||++||++|+++. +++++||++.+++.|.+++++.+.+++++|+||+||+|+++|+||+||||.+ T Consensus 322 f~~~tl~P~~~~ie~~ln~~L~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~~ 401 (424) T protein:vir:18 322 FLQYTLQPYISRWENSIQRWLIPSKDVGRLHAEHNLDGLLRGDSASRAAFMKAMGESGLRTINEMRRTDNMPPLPGGDVA 401 (424) T ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCee Confidence 9999999999999999999999764 3578999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccccccccccCCC Q lcl|Aclame:pro 393 YLQQQNYSLEALSRRDAREDPFA 415 (454) Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~ 415 (454) ++++|+++++..++...+.+..+ T Consensus 402 ~~~~n~~~l~~~~~~~~~~~n~a 424 (424) T protein:vir:18 402 MRQAQYVPITDLGTNKEPRNNGA 424 (424) T ss_pred eeccCccchhhhhccCCccccCC Confidence 99999999976654322221111 No 13 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=100.00 E-value=3e-95 Score=538.79 Aligned_cols=404 Identities=21% Similarity=0.270 Sum_probs=345.0 Q ss_pred Ccchhhhhccccccccc---------cCcccch-hhh-----hhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRD---------VREAGWT-SLF-----QAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQD 65 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~---------~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ 65 (454) |||||||...++..... .+...|. ..+ +++...+.+.+.++..++.+.|+++++|++||++||++ T Consensus 3 l~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~ci~~Ia~~ 82 (431) T protein:vir:10 3 LFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGTGRETRALRNMAVLRCVTLISGT 82 (431) T ss_pred chhhhhcCcccccccccccccccccccccccccccccccccchHHHHhhccCccCcceechhhhhccHHHHHHHHHHHHh Confidence 99999886543221111 0011110 111 22333344556678889999999999999999999999 Q ss_pred hcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEE Q lcl|Aclame:pro 66 IAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEP 145 (454) Q Consensus 66 va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~ 145 (454) +|++|+++|+.+ +++.....|+.+.+|+.+||++||+.+||+.++.+++++||+|++++|+. |.+++|+|++|.+|++ T Consensus 83 iA~lp~~v~~~~-~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~-g~~~~L~pl~~~~v~~ 160 (431) T protein:vir:10 83 IGMLPMNLISSD-DSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSG-NRPIRLIPMDRGSAKG 160 (431) T ss_pred hccCceEEEEec-CceeeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC-CceEEEEEEcCceeEE Confidence 999999999864 44555556667777778999999999999999999999999999999985 8899999999999999 Q ss_pred EECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeE Q lcl|Aclame:pro 146 LVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVI 225 (454) Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l 225 (454) ..+.++...|+|+.. .+..+.+++++|||++.. +.++++|+||+..+...|.+..+++++..++|+||++|+++| T Consensus 161 ~~~~~~~~~y~~~~~----~g~~~~~~~~dViHir~~-~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil 235 (431) T protein:vir:10 161 RLTSTWQIVYDYTTP----TGDKIELPAREVFHLRDL-SIDGVSGVSRVKLSGNALELAEQAERAASRTFRTGVMAGGAI 235 (431) T ss_pred EEcCCCeEEEEEEeC----CceEEEEchhhEEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEE Confidence 999888888877643 345678999999999965 568899999999999999999999999999999999999999 Q ss_pred ecCccCCHHHHHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccc Q lcl|Aclame:pro 226 EIPGSITEENAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPP 304 (454) Q Consensus 226 ~~~~~~s~e~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~ 304 (454) ++++.+++++.+++++.|++.++| +|+|+++||++|++|++++++++|+||+|.+++++++||++|||||++||+.+++ T Consensus 236 ~~~~~ls~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp~~lg~~~~~ 315 (431) T protein:vir:10 236 EVPKELSDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLMMDDTS 315 (431) T ss_pred ecCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCC Confidence 999999999999999999999987 6999999999999999999999999999999999999999999999999999999 Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc---ccceeeecchhhhhcCHHHHHHHHHHHHhCC----CcCHHHH Q lcl|Aclame:pro 305 SSDNVEALEQQYYSQCLQTLIESIELLLDEALETG---ENESTEFDVTTLLRMDSERRMKTLGDAVKNT----LLTPNEA 377 (454) Q Consensus 305 ~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~---~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g----~~T~NE~ 377 (454) +++|+|++...|+++||.|+++.||++||++|+++ .+++++||++.+++.|.+++++.+.+++.+| +||+||+ T Consensus 316 t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~~g~lT~NE~ 395 (431) T protein:vir:10 316 WGSGIEQLAIFFIQYGLSHWFVSWEQAAARAFLPEKMLGQRQFKFNEGALLRGTLNDQAAFFSKALGAGGQSPWMKQNEV 395 (431) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhcCCceEEEechhhhccCHHHHHHHHHHHHhcccccCccCHHHH Confidence 99999999999999999999999999999999975 3568999999999999999999999999765 4999999 Q ss_pred HHHhcCCCCCC--ccccccccccccccccccccccccCCCcc Q lcl|Aclame:pro 378 RKRENLPPLAG--GDALYLQQQNYSLEALSRRDAREDPFASS 417 (454) Q Consensus 378 R~~~g~~p~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (454) |+++|+||+++ ||++++|.|..+.++..+ ++++. T Consensus 396 R~~~gl~p~~~~~gD~~~~p~n~~~~~~~~~------~p~~~ 431 (431) T protein:vir:10 396 REMLDLPRADDPVADQLRNPMTQKQKGSGDE------PPATT 431 (431) T ss_pred HHHhCCCCCCCccccceecccccccCCCCCC------CCCCC Confidence 99999999955 999999888765432211 01010 No 14 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=100.00 E-value=1e-94 Score=535.91 Aligned_cols=443 Identities=19% Similarity=0.239 Sum_probs=345.3 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccc------cCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEE Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAW------QQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLM 74 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~ 74 (454) |+=-=.....++. .....++..+.+...+ .....+....|+++++|++||++||++||++||++| T Consensus 1 ~~~~~~~~~~~p~---------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~V~acV~~IA~~iA~lpl~l~ 71 (518) T protein:vir:10 1 MLLANGQTLSAPA---------MAELSPQMQDSYYYAPAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCM 71 (518) T ss_pred CcccCceeecCch---------hhhhhhhhhcccccccccceecccccchhhHHHhhhHHHHHHHHHHHHhhccCceEEE Confidence 2211112222211 1111111111111111 122344556789999999999999999999999999 Q ss_pred eccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCC-ce Q lcl|Aclame:pro 75 QTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDG-EV 153 (454) Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g-~~ 153 (454) +..+++.. ...+|++..|+.+||++||+.+||+.++.+++++||+|++++|+.+|++++|+||+|+.|++..+.++ .. T Consensus 72 ~~~~~~~~-~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~v~v~~~~~~~~~ 150 (518) T protein:vir:10 72 FTSGDTET-EESDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRY 150 (518) T ss_pred EEcCCCce-eccchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCCceEEEEcCCCCEE Confidence 98887755 44677788899999999999999999999999999999999999999999999999999999988654 45 Q ss_pred eeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCH Q lcl|Aclame:pro 154 FYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITE 233 (454) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~ 233 (454) .|+|... ....+..+.|++++|||++..++.+..+|+||+..+...|....++++++.++|+||++|+++|++++.+++ T Consensus 151 ~y~~~~~-~~~~~~~~~~~~~eViHir~~s~dg~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~ls~ 229 (518) T protein:vir:10 151 EYYFQAG-AGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRLSE 229 (518) T ss_pred EEEEEec-CCccceEEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCH Confidence 5555433 334456678999999999988776667899999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHH Q lcl|Aclame:pro 234 ENAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEAL 312 (454) Q Consensus 234 e~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~ 312 (454) ++.+++++.|++.++| .|+|+++||++|++|++++++++|+||+|.+++++++||++|||||++||+.+.+|++|+|++ T Consensus 230 e~~~~~k~~~~~~~~G~~nag~v~vL~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~lg~~~~~t~sn~eq~ 309 (518) T protein:vir:10 230 AAQQRLREQFDRAHSGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQ 309 (518) T ss_pred HHHHHHHHHHHHHhcCccccCcceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHH Confidence 9999999999999988 689999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCc--ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCC--C Q lcl|Aclame:pro 313 EQQYYSQCLQTLIESIELLLDEALETG--ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLA--G 388 (454) Q Consensus 313 ~~~~~~~~i~P~~~~ie~~l~~~l~~~--~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~--~ 388 (454) ...|+++||.|++..|+++||++|++. ..++++||++.+++.|.+++++++.+++++|++|+||+|+++|+||++ + T Consensus 310 ~~~f~~~tL~P~l~~ie~~ln~~L~~~~~~~~~~~fd~~~llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~Gl~pie~~~ 389 (518) T protein:vir:10 310 MRAFYRDTMAIPIARIQSAMDKYVGQYWVRKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPK 389 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 999999999999999999999999875 356889999999999999999999999999999999999999999985 8 Q ss_pred ccccccccccccccccccccccccCCCccCcccCCC-----CCCcc-------cCcccccccccccHHHHHH-------- Q lcl|Aclame:pro 389 GDALYLQQQNYSLEALSRRDAREDPFASSGKTASVP-----QAVAA-------SDGNKAITETEHDAVKAMF-------- 448 (454) Q Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-------~d~~~~~~~~~~~~~~a~~-------- 448 (454) ||.+|++.|+++++............+........+ +.+.. +..++.....+.++...+. T Consensus 390 gD~~~~~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (518) T protein:vir:10 390 ADELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPTSVPGLSPTNSDRSTDSGKTEPRRLMQKPPPKESS 469 (518) T ss_pred CCeeeecccceecccccccccCCCCCCCCCCCCccccccccccccccCCCCCcccccccccccccchhccccCCCccccc Confidence 999999999999875544322211111111111000 00000 0011111111111111111 Q ss_pred -------HHHhcC Q lcl|Aclame:pro 449 -------RGILKK 454 (454) Q Consensus 449 -------~~~~~~ 454 (454) ++.+-+ T Consensus 470 ~~~~~~~~~~~~~ 482 (518) T protein:vir:10 470 PKHLRAVKGAMGR 482 (518) T ss_pred chHHHHHHHHhhc Confidence 111111 No 15 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=100.00 E-value=7.5e-95 Score=536.60 Aligned_cols=441 Identities=20% Similarity=0.298 Sum_probs=350.4 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +|++|+.+..++.. .......|....... ..+++...++..|+.+.|+++++|++||++||++||++|+++|+..++ T Consensus 3 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~iA~lp~~~~~~~~~- 79 (457) T protein:vir:62 3 FWSALFGRGHSPAL-DAAEGRAWEPYDPSI-YNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGG- 79 (457) T ss_pred hhhhhhcccccccc-ccccccccccchhhh-hhccccccCCceechHHhhccHHHHHHHHHHHHhHhhCceEEEEecCC- Confidence 55544322222111 111112222222222 224455677899999999999999999999999999999999987654 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCc----eeeE Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE----VFYR 156 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~----~~~~ 156 (454) ......++.+..++.+||++||+.+||+.++.+++++||||+++.++ +|.+.+||||+|.+|++..+..+. .++. T Consensus 80 ~~~~~~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~-~g~~~~l~~l~p~~v~v~~~~~~~~~~~~~~~ 158 (457) T protein:vir:62 80 TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) T ss_pred ccccccchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcceEEEEeccCCccceeEEE Confidence 44566788888899999999999999999999999999999998655 689999999999999998765432 2223 Q ss_pred EeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHH Q lcl|Aclame:pro 157 ITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENA 236 (454) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~ 236 (454) |.............|++++|||++..++.+.++|+||+..+...|.+..++++++.++|+||++|+++|++++.+++|+. T Consensus 159 y~~~~~g~~~~~~~~~~~eiih~r~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ls~e~~ 238 (457) T protein:vir:62 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) T ss_pred EEEccCCceeEEEeeCccceEEecCCCCCCceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEcCCCCCHHHH Confidence 33333322333457899999999988887779999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccc--cCHHHHH Q lcl|Aclame:pro 237 KKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS--DNVEALE 313 (454) Q Consensus 237 ~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~--~n~e~~~ 313 (454) +++++.|++.++| +|+|+++||++|++|++++++++|+||+|++++++++||++|||||.+||..+.+++ +|.|++. T Consensus 239 ~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~ 318 (457) T protein:vir:62 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) T ss_pred HHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHH Confidence 9999999999988 689999999999999999999999999999999999999999999999999887765 7899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccc---ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCc- Q lcl|Aclame:pro 314 QQYYSQCLQTLIESIELLLDEALETGEN---ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGG- 389 (454) Q Consensus 314 ~~~~~~~i~P~~~~ie~~l~~~l~~~~~---~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~- 389 (454) +.|+++||.|++++||++||++|+++.+ ++++||++.+++.|.+++++++.+++++|+||+||+|+++|+||+|+| T Consensus 319 ~~f~~~~l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~ 398 (457) T protein:vir:62 319 IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL 398 (457) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 9999999999999999999999997643 578999999999999999999999999999999999999999999997 Q ss_pred -cccccccccccccccccccccccCCCccCcc--cCCCCCCcccCcccccccccccHHHH Q lcl|Aclame:pro 390 -DALYLQQQNYSLEALSRRDAREDPFASSGKT--ASVPQAVAASDGNKAITETEHDAVKA 446 (454) Q Consensus 390 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~a 446 (454) |.+++|+|+.+++..........+.+..... ...+..++..+++....++++ ..+| T Consensus 399 ~D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~ 457 (457) T protein:vir:62 399 GEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETED-DDDA 457 (457) T ss_pred cceeeeccccccccccccccccCCCccCCCCccCCCCCCCCCCCCCCCccccccc-cccC Confidence 9999999999988765543332222111111 111111122222222222221 1111 No 16 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=100.00 E-value=6e-95 Score=537.12 Aligned_cols=417 Identities=22% Similarity=0.301 Sum_probs=344.3 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) ||++++..+.++..........+.+........+...+.++..|+.+.|+++++|++||++||++||++||++|++.++| T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~~~~g 88 (432) T protein:vir:10 9 LLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIAAMPLTMYMRTPDG 88 (432) T ss_pred hhhhhHhhcCCccccccccccccccCcchhhhhcccccccCcccchhhhhcchHHHHHHHHHHHhhhhCceeEEEecCCC Confidence 77776554443321100011111111111122234456678899999999999999999999999999999999998888 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) +.....++.+.+|+.+||++||+++||+.++.+++++||||++++|+ +|++.+||||+|+.|++..+.+|...|+|+.. T Consensus 89 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~-~g~~~~L~~l~~~~v~v~~~~~g~~~y~~~~~ 167 (432) T protein:vir:10 89 RKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDTKGNTAYRYRRT 167 (432) T ss_pred cccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCCceEEEEcCCCcEEEEEEec Confidence 77777777788888999999999999999999999999999999997 58999999999999999999999888887643 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~ 240 (454) .+..+.+++++|||++.. +.++++|+||+..+...|....++++++.++|+||++|++++++++.++++++++++ T Consensus 168 ----~g~~~~~~~~~iih~~~~-~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~~~ 242 (432) T protein:vir:10 168 ----DGQMIDIPKQQIWKIMGY-SLDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTDDQYDSFA 242 (432) T ss_pred ----CceEEEEcCccEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCCCHHHHHHHH Confidence 245678999999999855 668899999999999999999999999999999999999999999999999999888 Q ss_pred HHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccc---cCHHHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS---DNVEALEQQYY 317 (454) Q Consensus 241 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~---~n~e~~~~~~~ 317 (454) +.|.. +.|+|+++||++|++|++++++++|+||+|++++++++||++|||||++||..+.+++ +|+|++...|+ T Consensus 243 ~~~~~---~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~~~~sn~e~~~~~f~ 319 (432) T protein:vir:10 243 KKVSG---SVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGFL 319 (432) T ss_pred HHHhh---hhhCCCceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcccccchHHHHHHHHH Confidence 87753 3678999999999999999999999999999999999999999999999998876544 78999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhcCcc---cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccc-cc Q lcl|Aclame:pro 318 SQCLQTLIESIELLLDEALETGE---NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDA-LY 393 (454) Q Consensus 318 ~~~i~P~~~~ie~~l~~~l~~~~---~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~-~~ 393 (454) ++||.|+++.||++||++|+++. +++++||++.+++.|.+++++.+.+++++|+||+||+|+++|+||++|++. ++ T Consensus 320 ~~tl~P~~~~ie~~ln~kL~~~~~~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~glppi~g~~~~~~ 399 (432) T protein:vir:10 320 SMTLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAVLT 399 (432) T ss_pred HHHHHHHHHHHHHHHHhhhcCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcceEe Confidence 99999999999999999999764 357899999999999999999999999999999999999999999998765 45 Q ss_pred cccccccccccccccccccCCCccCcccCCCCCCcccCccc Q lcl|Aclame:pro 394 LQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNK 434 (454) Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 434 (454) ++.++++++..+....++... +....+.+.+. + T Consensus 400 ~~~~~~pl~~~~~~~~~~~~~-------~~~~~~~~~~~-~ 432 (432) T protein:vir:10 400 VQSAMVPLDSIGLQASPEPAS-------GLGNQQQDKVS-K 432 (432) T ss_pred ecCcccchhhhcccCCCCCCC-------CCCCccccccc-C Confidence 788998887654322111110 11111111111 1 No 17 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=100.00 E-value=9.1e-95 Score=536.15 Aligned_cols=411 Identities=22% Similarity=0.343 Sum_probs=350.3 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) || |+|........+.....+|.+.+- ..+.+.++..|+.+.|+++++|++||++||+++|++||++|+.++++ T Consensus 1 ~~--~~r~~~~~~~~~~~~~~~~~~~~~-----g~~~s~~~~~vt~~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~ 73 (419) T protein:vir:14 1 MF--FSRQLLSNLGQTQMSAGGWVSALL-----GSSRSDSGQVVTPASALALTVLQNCVTLLAESIAQLPIELYERSGED 73 (419) T ss_pred Cc--ccccccccccccccCcchhhHHhh-----cCCCccCCcccchHHhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 54 555444333333344444433221 12345668889999999999999999999999999999999998888 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) +.....|+++.+|+.+||++||+.+||+.++.+++++||+|++++|+.+|.+++|||++|++|++..+.++...|.+... T Consensus 74 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~l~pl~~~~v~v~~~~~~~~~y~~~~~ 153 (419) T protein:vir:14 74 RKPATDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGVIQGLYPLDNEAVTVMRGSDLKPVYRVRGS 153 (419) T ss_pred cccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceEEEEEccC Confidence 77777777777788899999999999999999999999999999999999999999999999999999988877766532 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccC----CHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI----TEENA 236 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~----s~e~~ 236 (454) ..++.++|||++++ +.++++|+||+..+...|....++++++.++|+||+.|+++|++++.. ++++. T Consensus 154 --------~~~~~~~i~h~~~~-~~dg~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~ 224 (419) T protein:vir:14 154 --------DPMPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPKDAPALKDQASV 224 (419) T ss_pred --------cccchhheeEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHH Confidence 23678999999965 568899999999999999999999999999999999999999998765 47889 Q ss_pred HHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH Q lcl|Aclame:pro 237 KKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ 315 (454) Q Consensus 237 ~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~ 315 (454) +++++.|++.++| +|+|+++++++|++|++++++++|+||+|.+++++++||++|||||++||..++++++|+|++... T Consensus 225 ~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~t~s~~E~~~~~ 304 (419) T protein:vir:14 225 DRITDGWNAKFGGSGNAKKVALLQEGMTFRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQ 304 (419) T ss_pred HHHHHHHHHHhcCccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHH Confidence 9999999999988 688999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcc---cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccc Q lcl|Aclame:pro 316 YYSQCLQTLIESIELLLDEALETGE---NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDAL 392 (454) Q Consensus 316 ~~~~~i~P~~~~ie~~l~~~l~~~~---~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~ 392 (454) |+++||.|++++||++||++|+++. +++++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+||||.+ T Consensus 305 f~~~~L~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~~ 384 (419) T protein:vir:14 305 FVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIY 384 (419) T ss_pred HHHHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCee Confidence 9999999999999999999998764 4678999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccccccccccCCCccCcccCCCCCCcccCcccccc Q lcl|Aclame:pro 393 YLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAIT 437 (454) Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 437 (454) ++|+|+++++........+. .+.+...++.++..+ T Consensus 385 ~~~~n~~~~~~~~~~~~~~~----------~~~~~~~~e~~~~l~ 419 (419) T protein:vir:14 385 LSPMNMVDASKPQQLPVGKS----------EPTKAAIDEIGRILS 419 (419) T ss_pred eeccccccccccccccCCCC----------CCccccccchhcccC Confidence 99999987765433211111 111122222233333 No 18 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=100.00 E-value=1.9e-94 Score=534.38 Aligned_cols=407 Identities=22% Similarity=0.341 Sum_probs=348.8 Q ss_pred Cc--chhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccc Q lcl|Aclame:pro 1 MW--NLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDA 78 (454) Q Consensus 1 m~--n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~ 78 (454) || +||+|+... . ......+... .+ ....+.++..|+.+.|+++++|++||++||+++|++|+++++.++ T Consensus 1 ~~f~~~f~r~~~~-~---~~~~~~~~~~---~~--~~~~~~~g~~v~~~~~l~~~~v~~~i~~Ia~~iA~~p~~~~~~~~ 71 (413) T protein:vir:48 1 MFFSGLFQRKSDA-P---VTTPAELAEA---IG--LSYDTYTGKRISSQRAMRLTAVYSCVRVLAESVGMLPCSLYKISG 71 (413) T ss_pred CccchhhccCccC-C---ccchHHHHHh---hh--cCcccccCceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecC Confidence 44 445543221 1 1112222222 21 122234667889999999999999999999999999999999888 Q ss_pred cccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEe Q lcl|Aclame:pro 79 QGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRIT 158 (454) Q Consensus 79 ~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~ 158 (454) +++.+...++.+.+|+.+||++||+.+||+.++.+++++||+|++++|+ .|++.+|||++|++|++..+.++...|++. T Consensus 72 ~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~~~~y~~~ 150 (413) T protein:vir:48 72 TLKTRVVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKA-LGEVVELLPIDPGCVEPKLNSQWQPVYQVT 150 (413) T ss_pred CcceeecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeC-CCcEEEEEEEcCceEEEEEcCCceEEEEEE Confidence 8877777777777888899999999999999999999999999999986 589999999999999999999888887765 Q ss_pred ccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHH Q lcl|Aclame:pro 159 PDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKK 238 (454) Q Consensus 159 ~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~ 238 (454) .. .+....+++++|||++.++ .++++|+||+..+...|+...++.+++.++|+||+.|+++|+++..+++++.++ T Consensus 151 ~~----~g~~~~~~~~evih~~~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~~~~e~~~~ 225 (413) T protein:vir:48 151 FP----DGSVDVLTQDEIWHVRTLT-LDGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTEQKLTPDAYER 225 (413) T ss_pred ec----CceEEEEccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHH Confidence 43 2345679999999999664 578999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHH Q lcl|Aclame:pro 239 LKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYY 317 (454) Q Consensus 239 ~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~ 317 (454) +++.|++.++| .|+|+++++++|++|++++++++|+||+|.+++.+++||++|||||++||+.+.++++|+|++...|+ T Consensus 226 ~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~~~f~ 305 (413) T protein:vir:48 226 LKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFI 305 (413) T ss_pred HHHHHHHHhcCccccCcceecCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCCcccHHHHHHHHH Confidence 99999999988 78999999999999999999999999999999999999999999999999999899999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhcCcc---cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccccc Q lcl|Aclame:pro 318 SQCLQTLIESIELLLDEALETGE---NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYL 394 (454) Q Consensus 318 ~~~i~P~~~~ie~~l~~~l~~~~---~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~ 394 (454) ++||.|++++|+++||++|+++. +++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+||||.+++ T Consensus 306 ~~~i~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~ggD~~~~ 385 (413) T protein:vir:48 306 NYSLVPYLTRIEQRINTGLVRESKQGKFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLT 385 (413) T ss_pred HHHHHHHHHHHHHHHHhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeec Confidence 99999999999999999999764 457899999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccccccccCCCccCcccC Q lcl|Aclame:pro 395 QQQNYSLEALSRRDAREDPFASSGKTAS 422 (454) Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (454) +.|+.+.+..++...++...+....+.. T Consensus 386 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413) T protein:vir:48 386 PMNMTTSPSAGDDNGKKKESGDADKTAS 413 (413) T ss_pred cccccccccccccCCCCCCCCCccccCC Confidence 9999887655443322222211111111 No 19 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=100.00 E-value=6.9e-95 Score=536.81 Aligned_cols=398 Identities=24% Similarity=0.313 Sum_probs=344.7 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +|+++++.++.+.......... ++. +..+..++.+.++++++|++||++||+++|++|+++|+..++| T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~---~~~---------~~g~~~~~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~ 70 (411) T protein:vir:81 3 WWSRLTRFFRPRNETVDMTNPL---LLQ---------WLGVDPDTPRNQLSEATYFACLKILSESLGKLPLKMYQKTERG 70 (411) T ss_pred hHHHHHhhccCcccccccchHH---HHH---------HhcCcccChhhhhccHHHHHHHHHHHHhHhhCceeEEEecCCc Confidence 5555554444433332222211 111 1223456788999999999999999999999999999998888 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCce------e Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEV------F 154 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~------~ 154 (454) ......++++.+|+.+||++||+.+||+.++.+++++||||++++|+ .|.+.+|||++|+.|++..++++.. + T Consensus 71 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~-~g~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~ 149 (411) T protein:vir:81 71 IVKSDREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYS-GPQLQALWILPSQYVTIVVDDRGLLGEKNAIW 149 (411) T ss_pred eeeecccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCceEEEEEECCceEEEEEcCcccccccceEE Confidence 77776777777787899999999999999999999999999999998 5899999999999999999876632 3 Q ss_pred eEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHH Q lcl|Aclame:pro 155 YRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEE 234 (454) Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e 234 (454) |.|.. ...+..+.+++++|||++++++.++++|+||+..+...|....++++++.++|+||++|+++|++++.++++ T Consensus 150 ~~~~~---~~~g~~~~~~~~eiih~k~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e 226 (411) T protein:vir:81 150 YRYND---PYDGKMYVFRNDEILHFKTSVTFDGITGLSVRDVLKHTVDGALESQKFMNNLYKTGLTGKAVLEYTGDLNQE 226 (411) T ss_pred EEEEe---cCCceEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCHH Confidence 33332 223466789999999999888889999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHH Q lcl|Aclame:pro 235 NAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALE 313 (454) Q Consensus 235 ~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~ 313 (454) +.++++++|++.++| +|+|+++++++|++|++++++++|+||+|.+++.+++||++|||||++||+.+.++++|+|++. T Consensus 227 ~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~ 306 (411) T protein:vir:81 227 ARDRLVKGFEQFANGSKNAGKIIPVPLGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQINDYEKSSYASAEAQN 306 (411) T ss_pred HHHHHHHHHHHHhcCccccCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCchhHHHHH Confidence 999999999999987 6899999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCc----ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCc Q lcl|Aclame:pro 314 QQYYSQCLQTLIESIELLLDEALETG----ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGG 389 (454) Q Consensus 314 ~~~~~~~i~P~~~~ie~~l~~~l~~~----~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~ 389 (454) .+|+++||.|+++.||++||++|+++ .+.+++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+||| T Consensus 307 ~~f~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~g~~t~NE~R~~~gl~p~~gg 386 (411) T protein:vir:81 307 LAFYVDTLLYVLKQYEEEITYKILSNDLISQGHYFKFNVNVILRADIKTQMDSLSTAVQNGIMTPNEARDYLDMPADDYG 386 (411) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhhcCCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 99999999999999999999999875 35689999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccccccccccccCCCc Q lcl|Aclame:pro 390 DALYLQQQNYSLEALSRRDAREDPFAS 416 (454) Q Consensus 390 d~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (454) |.+++++|+++++..++... +++.+ T Consensus 387 D~~~~~~n~~pl~~~~~~~~--kgGd~ 411 (411) T protein:vir:81 387 NNLMANGNYIPLSMLGANYG--KGGDS 411 (411) T ss_pred CeeeeccCccchhhhhhhhc--cCCCC Confidence 99999999999976433111 11111 No 20 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=100.00 E-value=1.7e-94 Score=534.67 Aligned_cols=398 Identities=24% Similarity=0.360 Sum_probs=344.0 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) || |++.++++........ ..+..+. +...++..|+.+.|+++++|++||++||+++|++||++|+.++ | T Consensus 1 m~--f~~~~~~~~~~~~~~~---~~~~~~~-----g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~-~ 69 (409) T protein:vir:10 1 ML--FRKGFKNQSQEISIDD---KKILEWL-----GINPSETYVNGKSCLKQATVFGCIRILSDNISKLPIKIYQKKD-G 69 (409) T ss_pred Cc--ccccccCcCCCCCCCh---HHHHHHh-----cCCcCcceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecC-C Confidence 87 6666665544332221 1222222 2345677889999999999999999999999999999998644 4 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCce------e Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEV------F 154 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~------~ 154 (454) ......+++.++|+.+||++||+.+||+.++.+++++||+|++++|+.+|.+++|||++|++|++..+.+|.. . T Consensus 70 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~~~~~ 149 (409) T protein:vir:10 70 IKRVPDHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEIKGLYPLKSDGMKIFVDDTGLLNSENNVW 149 (409) T ss_pred eeeccCchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCCceEEEEcCCccccccceEE Confidence 4445555666667789999999999999999999999999999999999999999999999999998876532 3 Q ss_pred eEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHH Q lcl|Aclame:pro 155 YRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEE 234 (454) Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e 234 (454) |.++ ...+....+++++|||++..+ .++++|+||+..+...|....++++++.++|+||++|+++|++++.++++ T Consensus 150 y~~~----~~~g~~~~~~~~evih~r~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e 224 (409) T protein:vir:10 150 YLYT----DDLGQRHKFMSDEILHFKGLT-ADGLAGLSVIELLNHLIENGKSSETYLNNFFKNGLQVKGLVQYAGDLNPE 224 (409) T ss_pred EEEE----eCCceeEEeccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCHH Confidence 3333 223456789999999999664 57899999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHH Q lcl|Aclame:pro 235 NAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALE 313 (454) Q Consensus 235 ~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~ 313 (454) +.+++++.|++.++| .|+|+++|+++|++|++++.+++|+|++|.+++++++||++|||||.+||+.+.++++|++++. T Consensus 225 ~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~e~~~ 304 (409) T protein:vir:10 225 AEEVFKENFERMSSGLKNAHRIAMLPIGYKFEPISQKLVDAQFLENSQLTIRQIASVFGVKMHQLNDLDRATHSNITEQN 304 (409) T ss_pred HHHHHHHHHHHHhccccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCccccHHHHH Confidence 999999999999987 6899999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCc----ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCc Q lcl|Aclame:pro 314 QQYYSQCLQTLIESIELLLDEALETG----ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGG 389 (454) Q Consensus 314 ~~~~~~~i~P~~~~ie~~l~~~l~~~----~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~ 389 (454) ..|+++||.|+++.||++||++|++. .+++++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+||| T Consensus 305 ~~f~~~~l~P~~~~ie~~ln~kL~~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~gg 384 (409) T protein:vir:10 305 REFYIDTLQSILNMYELEINYKLFLISEIKNGFYSKFNVDTILRADIKTRYESYKEAIQNGFKTPNEIRELEEDEPLEGG 384 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhccCCcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCc Confidence 99999999999999999999999864 44689999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccccccccccccCCCccCc Q lcl|Aclame:pro 390 DALYLQQQNYSLEALSRRDAREDPFASSGK 419 (454) Q Consensus 390 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (454) |.+++++|+++++..++... ++.++ T Consensus 385 D~~~~~~n~~~~~~~~~~~~-----kgGe~ 409 (409) T protein:vir:10 385 DVLLINGNMIPVKMAGEQYS-----KGGEK 409 (409) T ss_pred CeeeeccCccchhhcccccc-----ccCCC Confidence 99999999999876543211 11111 No 21 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=100.00 E-value=3.2e-94 Score=533.13 Aligned_cols=417 Identities=21% Similarity=0.299 Sum_probs=344.2 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) ||+.++..+.++..........+.+........+...+.++..|+.++|+++++|++||++||++||++|+++|++.++| T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~a~~~~aV~~~v~~Ia~~ia~lp~~~y~~~~~g 88 (432) T protein:vir:97 9 LLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAVAAMPLMMYMRTPDG 88 (432) T ss_pred hhhhhHhhcCCccccccccccccccCchhhhhhcccccccCcccchHhhhcchHHHHHHHHHHHhhccCceEEEEecCCC Confidence 77776555443321111111111111111122234456678899999999999999999999999999999999998888 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) +.....|+.+++|+.+||++||+++||+.++.+++++||||++++++ +|++.+||||+|+.|++..+.+|...|+++.. T Consensus 89 ~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~-~g~~~~L~~l~p~~v~v~~~~~g~~~y~~~~~ 167 (432) T protein:vir:97 89 RKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDTKGNTAYRYRRT 167 (432) T ss_pred cccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCcceEEEEcCCCcEEEEEEec Confidence 87777777788888999999999999999999999999999999997 58999999999999999999999888887643 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~ 240 (454) .+..+.+++++|||++.. +.++++|+||+..+...|....+++++..++|+||++|++++++++.++++++++++ T Consensus 168 ----~g~~~~~~~~~iih~r~~-~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~~~ 242 (432) T protein:vir:97 168 ----DGQMIDIPRQQIWKIMGY-SLDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTDDQYDSFS 242 (432) T ss_pred ----CceEEEEccccEEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeEecCCCCCHHHHHHHH Confidence 245678999999999964 668899999999999999999999999999999999999999999999999988877 Q ss_pred HHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccc---cCHHHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS---DNVEALEQQYY 317 (454) Q Consensus 241 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~---~n~e~~~~~~~ 317 (454) +.|.. +.|+|+++||++|++|++++++++|+||+|.+++++++||++|||||++||..+.+++ +|+|++...|+ T Consensus 243 ~~~~~---~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~~s~~e~~~~~f~ 319 (432) T protein:vir:97 243 KKVSG---SVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGFL 319 (432) T ss_pred HHHhh---hhcCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccccchhHHHHHHHHH Confidence 76643 3578999999999999999999999999999999999999999999999998776554 78999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhcCcc---cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccc-c Q lcl|Aclame:pro 318 SQCLQTLIESIELLLDEALETGE---NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDAL-Y 393 (454) Q Consensus 318 ~~~i~P~~~~ie~~l~~~l~~~~---~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~-~ 393 (454) ++||.|+++.||++||++|+++. +++++||++.+++.|.+++++.+.+++++|+||+||+|+++|+||++|++.. + T Consensus 320 ~~tl~P~~~~ie~~ln~kLl~~~e~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~glpp~~g~~~~~~ 399 (432) T protein:vir:97 320 TMTLSPWLRRIEQSIALNLLTPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAVLT 399 (432) T ss_pred HHHHHHHHHHHHHHHhhhccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcceEe Confidence 99999999999999999999764 3578999999999999999999999999999999999999999999987654 5 Q ss_pred cccccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 394 LQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) ++.++++++.......++. + .+....+.+.+.. T Consensus 400 ~~~~~~pl~~~~~~~~~~~---~----~~~~~~~~~~~~~ 432 (432) T protein:vir:97 400 VQSAMVPLDSIGLQASPEP---A----SGLGNQQQDKVSK 432 (432) T ss_pred ecccccchhhhcccCCCCC---C----CCCCCcccccccC Confidence 7899998876543222111 0 0111111111111 No 22 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=100.00 E-value=4.7e-94 Score=532.24 Aligned_cols=414 Identities=22% Similarity=0.315 Sum_probs=340.5 Q ss_pred Ccchhhh---hccccccccccCcccchhh--hhhh-hhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEE Q lcl|Aclame:pro 1 MWNLLRR---TRKNQKSGRDVREAGWTSL--FQAV-AEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLM 74 (454) Q Consensus 1 m~n~f~r---~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~ 74 (454) -+++|.| .+..... .....+.+. .++. .......+.++..|+.+.|+++++|++||++||+++|++|+++| T Consensus 6 ~mg~f~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y 82 (432) T protein:vir:81 6 KLGLFGQLKAMFVPPDP---VDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIAAMPLTMY 82 (432) T ss_pred hcchhhhhhhhcccccc---cccccccccccCccchhhhcccccccCcccchHhhhccHHHHHHHHHHHHhhhhCceeeE Confidence 3344444 3322211 111111111 1111 11223445678889999999999999999999999999999999 Q ss_pred eccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCcee Q lcl|Aclame:pro 75 QTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVF 154 (454) Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~ 154 (454) ++.++|+.....|+++.+|+.+||++||+.+||+.++.+++++||||++++++ +|++.+||||+|+.|++..+.+|... T Consensus 83 ~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~-~g~~~~L~~l~~~~v~v~~~~~g~~~ 161 (432) T protein:vir:81 83 MRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDPKGNTA 161 (432) T ss_pred EecCCcceecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCCceEEEECCCCcEE Confidence 99888887777777777888899999999999999999999999999999987 58999999999999999999999888 Q ss_pred eEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHH Q lcl|Aclame:pro 155 YRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEE 234 (454) Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e 234 (454) |+|+... +..+.+++++|||+++. +.++++|+||+..+...|....++++++.++|+||++|+++++++..++++ T Consensus 162 y~~~~~~----g~~~~~~~~~iih~r~~-~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e 236 (432) T protein:vir:81 162 YRYRRTD----GQMIDIPKQQIWKIMGY-SLDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTDD 236 (432) T ss_pred EEEEecC----ceEEEEccccEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCCCHH Confidence 8876432 45678999999999954 667899999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccc---cCHHH Q lcl|Aclame:pro 235 NAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS---DNVEA 311 (454) Q Consensus 235 ~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~---~n~e~ 311 (454) ++++++++|+. +.|+|++++|++|++|++++++++|+||+|.+++++++||++|||||++||..+.+++ +|+|+ T Consensus 237 ~~~~~~~~~~~---~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~sn~eq 313 (432) T protein:vir:81 237 QYDSFAKKVSG---SVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIES 313 (432) T ss_pred HHHHHHHHHhh---hhcCCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccccccchHHH Confidence 99998887753 3678999999999999999999999999999999999999999999999998876554 78999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcc---cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCC Q lcl|Aclame:pro 312 LEQQYYSQCLQTLIESIELLLDEALETGE---NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAG 388 (454) Q Consensus 312 ~~~~~~~~~i~P~~~~ie~~l~~~l~~~~---~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~ 388 (454) +...|+++||.|+++.||++||++|+++. +++++||++.+++.|.+++++++.+++++|+||+||+|+++|+||++| T Consensus 314 ~~~~f~~~tl~P~~~~ie~~l~~kLl~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~t~NE~R~~~glpp~~g 393 (432) T protein:vir:81 314 QQLGFLTMTLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGG 393 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC Confidence 99999999999999999999999999764 357899999999999999999999999999999999999999999998 Q ss_pred ccc-cccccccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 389 GDA-LYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 389 ~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) ++. ++++.++++++..+....++...+ ....+.+.+.+ T Consensus 394 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~-------~~n~~~~~~~~ 432 (432) T protein:vir:81 394 NAAVLTVQSAMVPLDSIGLQASPEPASG-------LGNQQQDKVSK 432 (432) T ss_pred CcceEeecCcccchhhhccCCCCCCCCC-------CCCcccccccC Confidence 755 457899998876544222111110 00111111111 No 23 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=100.00 E-value=7.5e-94 Score=531.13 Aligned_cols=408 Identities=23% Similarity=0.315 Sum_probs=343.0 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +++||+++.. +.+ ..|.....+ .....+.++..++.+.++++++|++||++||+++|++||++|+..++| T Consensus 3 ~~~~~~~~~~-~~~------~~~~~~~~~---~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~g 72 (419) T protein:vir:57 3 IPQFWKGRPS-ENR------VNWQVVPGG---MRSSSSQAGVIITPETALALSAVRACVTLLAESVAQLPCVLYRRTENG 72 (419) T ss_pred chhhhccCCc-ccc------ccccccccc---cccccccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcCCC Confidence 3444443211 111 112222121 123456678889999999999999999999999999999999998888 Q ss_pred cceehhhhH-HHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEec Q lcl|Aclame:pro 81 IRRETRRGD-IARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITP 159 (454) Q Consensus 81 ~~~~~~~~~-~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~ 159 (454) ......+|+ +.+|+.+||++||+.+||+.++.+++++||+|++|+|+.+|.+++|||++|++|++..+.+|...|.+.. T Consensus 73 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~pl~~~~v~v~~~~~g~~~y~~~~ 152 (419) T protein:vir:57 73 GREIAFDHPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGDITELIPINPHKVIVLKGPDGMPYYDIPS 152 (419) T ss_pred ceeccccchHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCcceEEEECCCceEEEEEcC Confidence 766655554 5556679999999999999999999999999999999999999999999999999999998877666532 Q ss_pred cccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCc----cCCHHH Q lcl|Aclame:pro 160 DRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPG----SITEEN 235 (454) Q Consensus 160 ~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~----~~s~e~ 235 (454) . ...++.++|||++.. +.++++|+||+..+...|....++++++.++|+||++|+++|+++. ..++++ T Consensus 153 ~-------~~~~~~~~vih~r~~-~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~e~ 224 (419) T protein:vir:57 153 I-------GEILPMRMVHHIKSF-SLDGYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVIERPFEAKAIASQAA 224 (419) T ss_pred C-------ceEEchhhEEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEecCcCCcccCHHH Confidence 1 245889999999965 5678999999999999999999999999999999999999999864 357899 Q ss_pred HHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH Q lcl|Aclame:pro 236 AKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ 314 (454) Q Consensus 236 ~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~ 314 (454) .+++++.|.+.++| .|+|+++++++|++|++++++++|+||+|.+++++++||++|||||.+||+.+.++++|+|++.. T Consensus 225 ~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~ 304 (419) T protein:vir:57 225 VDAILAKWTERYGGVRNAFSVGMLQEGMTYKQLSQDNEKAQLLQSRQYTVNEVCRLYKVPPHMIQDLQKSTNNNIEHQGL 304 (419) T ss_pred HHHHHHHHHHHhccccccccceecCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCccccHHHHHH Confidence 99999999999987 68999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcc---cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccc Q lcl|Aclame:pro 315 QYYSQCLQTLIESIELLLDEALETGE---NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDA 391 (454) Q Consensus 315 ~~~~~~i~P~~~~ie~~l~~~l~~~~---~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~ 391 (454) .|+++||.|+++.|+++||++|+++. +++++||++.+++.|.+++++.+++++++|+||+||+|+++|+||+||||. T Consensus 305 ~f~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~ 384 (419) T protein:vir:57 305 QYVIYTMLAILKRHESAMMRDLLLPSERRDFYIEFNVSSLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLTPIPGGDK 384 (419) T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCe Confidence 99999999999999999999998763 457899999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccccccccccCCCccCcccCCCCC Q lcl|Aclame:pro 392 LYLQQQNYSLEALSRRDAREDPFASSGKTASVPQA 426 (454) Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (454) +++|+|++++........+...+.+.........+ T Consensus 385 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (419) T protein:vir:57 385 YLTPLNMVDSKALTGIGKATPQQLKDIEAILCTRN 419 (419) T ss_pred eeeccccccccccccccCCCcccCcchhhhhhccC Confidence 99999988776554432222111111111111111 No 24 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=100.00 E-value=4.2e-94 Score=532.52 Aligned_cols=407 Identities=23% Similarity=0.356 Sum_probs=341.8 Q ss_pred Ccch-hhhhccccc-cccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccc Q lcl|Aclame:pro 1 MWNL-LRRTRKNQK-SGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDA 78 (454) Q Consensus 1 m~n~-f~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~ 78 (454) +|++ |+|+.+... +..............+....+ ....+..++.+.++++++|++||++||++||++|+++++.++ T Consensus 3 ~f~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~v~~~~al~~~~v~~ci~~ia~~iA~lp~~~~~~~~ 80 (422) T protein:vir:13 3 FLRGLFNKKNNNDEKRSNYDEDIGIDISDSNFWEKF--GIKLNFSVRGKRALKENTVYVCTKIRAESIGKLSLKIYKDKE 80 (422) T ss_pred hhhhhhhccCCccchhhhhhhccccccCcchhhhhc--cccCCcccchhhhhccHHHHHHHHHHHHhhhhCceEEEecCc Confidence 6664 444333221 111111111100001111111 223456789999999999999999999999999999997544 Q ss_pred cccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCc------ Q lcl|Aclame:pro 79 QGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE------ 152 (454) Q Consensus 79 ~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~------ 152 (454) .. ..++.+.+|+.+||++||+++||+.++.+++++||+|++++|+.+|++++|+|++|++|++..+.+|. T Consensus 81 ~~----~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~~~~~~~~~~~~~~~ 156 (422) T protein:vir:13 81 EY----KEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKIIGLYPINSDNVTKIIDDDNFLSSLSK 156 (422) T ss_pred cc----ccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEcCCcceeccce Confidence 32 24566777778999999999999999999999999999999999999999999999999999988763 Q ss_pred eeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCC Q lcl|Aclame:pro 153 VFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSIT 232 (454) Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s 232 (454) ..|.+.. ..+....+++++|||++.+.+.++++|+||+..+...|....++++++.++|+||++|+++|++++.++ T Consensus 157 ~~y~~~~----~~g~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~ 232 (422) T protein:vir:13 157 VWYVVTD----KNGKEHKLLPDEMLHFIGDITLDGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIVQYVGDLD 232 (422) T ss_pred EEEEEEe----CCCeEEEEcccceEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCC Confidence 2333332 234567899999999998888899999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHH Q lcl|Aclame:pro 233 EENAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEA 311 (454) Q Consensus 233 ~e~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~ 311 (454) +++.+++++.|++.++| +|+++++||++|++|++++++++|+||+|.+++.+++||++|||||.+||+.+.++++|+|+ T Consensus 233 ~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn~e~ 312 (422) T protein:vir:13 233 EKAKKIFKKEFESMSNGLENAHSISLLPFGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLERATFNNLTE 312 (422) T ss_pred HHHHHHHHHHHHHHhcCccccCCceecCCCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHH Confidence 99999999999999987 68999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcc----cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCC Q lcl|Aclame:pro 312 LEQQYYSQCLQTLIESIELLLDEALETGE----NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLA 387 (454) Q Consensus 312 ~~~~~~~~~i~P~~~~ie~~l~~~l~~~~----~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~ 387 (454) +...|+++||.|++++||++||++|+++. +++++||++.+++.|.+++++.+++++++|+||+||+|+++|+||+| T Consensus 313 ~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ 392 (422) T protein:vir:13 313 QQKDFYVTTLQSSLTVYEQEIQDKLFSQYETLQDVKAEFNVDTILRSDIKTRYEAYRIGIQGGFIEANEARRRENLPPVE 392 (422) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhhhcCCceEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 99999999999999999999999999764 46789999999999999999999999999999999999999999999 Q ss_pred CccccccccccccccccccccccccCCCccCc Q lcl|Aclame:pro 388 GGDALYLQQQNYSLEALSRRDAREDPFASSGK 419 (454) Q Consensus 388 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (454) |||.+++++|+++++..+.... ++....++ T Consensus 393 ggD~~~~~~n~~~l~~~~~~~~--~~g~~~g~ 422 (422) T protein:vir:13 393 GGDRLLVNGNMIPIEMAGEQYK--KGGEKGGK 422 (422) T ss_pred CcCeeeeccCccchhhcccccc--cCCCcCCC Confidence 9999999999999976654221 11111111 No 25 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=100.00 E-value=2e-93 Score=528.77 Aligned_cols=439 Identities=19% Similarity=0.280 Sum_probs=348.2 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +|+.|++..+... ........|.+...... .+++...++..|+.+.|+++++|++||++||++||++|+++|+.++++ T Consensus 3 ~~~~l~~r~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~g~~V~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~ 80 (457) T protein:vir:13 3 FWSALFGRGHSPA-LDGIEARAWEPYDPSIY-NLGAVAASGETVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGS 80 (457) T ss_pred hhhhhhccccccc-ccccccccccccchHHH-hhcccccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 3443322222111 11111122332222222 234556678999999999999999999999999999999999987766 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCc----eeeE Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE----VFYR 156 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~----~~~~ 156 (454) +.... ++.+..++..||.+|++.+||+.++.+++++||+|++|.++ .|.+++||||+|+.|++..+..+. .++. T Consensus 81 ~~~~~-~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~~-~g~~~~l~~l~p~~v~v~~~~~~~~~~~~~~~ 158 (457) T protein:vir:13 81 RKEIV-TPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWQ-GPNIVGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) T ss_pred ccccc-cchHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEccCceEEEEecCCCccceeEEE Confidence 55554 45555555666568999999999999999999999999766 589999999999999998765443 2223 Q ss_pred EeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHH Q lcl|Aclame:pro 157 ITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENA 236 (454) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~ 236 (454) |.............|++++|||++.+++.+.++|+||+..+...|.+..++++++.++|+||++|+++|+++..++++++ T Consensus 159 y~~~~~~~~~~~~~~~~~diih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ls~e~~ 238 (457) T protein:vir:13 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVVEVPGTMSEEGL 238 (457) T ss_pred EEEecCCceeeEEeeCccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCCCCCHHHH Confidence 33332222333456899999999998888889999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccc--cCHHHHH Q lcl|Aclame:pro 237 KKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS--DNVEALE 313 (454) Q Consensus 237 ~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~--~n~e~~~ 313 (454) +++++.|++.++| +|+|+++||++|++|++++++++|+||+|++++.+++||++|||||++||..+.+++ +|.|++. T Consensus 239 ~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~ 318 (457) T protein:vir:13 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) T ss_pred HHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHH Confidence 9999999999987 689999999999999999999999999999999999999999999999998887765 7899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccc---ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCc- Q lcl|Aclame:pro 314 QQYYSQCLQTLIESIELLLDEALETGEN---ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGG- 389 (454) Q Consensus 314 ~~~~~~~i~P~~~~ie~~l~~~l~~~~~---~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~- 389 (454) ..|+++||.|++++||++||++|+++.+ ++++||++.+++.|.+++++.+.+++++|+||+||+|+++|++|++|| T Consensus 319 ~~f~~~tl~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~Pi~~g~ 398 (457) T protein:vir:13 319 IAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGL 398 (457) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccCceeEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCc Confidence 9999999999999999999999998643 568999999999999999999999999999999999999999999987 Q ss_pred -cccccccccccccccccccccccCCCccCcccCCC----CCCcccCcccccccccccH Q lcl|Aclame:pro 390 -DALYLQQQNYSLEALSRRDAREDPFASSGKTASVP----QAVAASDGNKAITETEHDA 443 (454) Q Consensus 390 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~~~~ 443 (454) |.+++|.|+++++..........+.+......... .....++.+...++++.|+ T Consensus 399 ~d~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~ 457 (457) T protein:vir:13 399 GEKYRVPLNLGEVGEEPEPEPAPAPPAIEPPAEEPDEEPEPEGKPDDEGATEEDDEDDA 457 (457) T ss_pred ccceeeccccccccccccccccCCCCCCCCCccccCCCCCCCCCCccccCCCCcccccC Confidence 99999999999876555433333222221111111 1122233333333444454 No 26 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=100.00 E-value=1.5e-93 Score=529.45 Aligned_cols=410 Identities=19% Similarity=0.262 Sum_probs=345.1 Q ss_pred Ccch-hhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 1 MWNL-LRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 1 m~n~-f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) +|+. |+|+.. .. ............+. .+..+.++..|+.+.++++++|++||++||++||++|+++|+..++ T Consensus 2 ~~~~~f~~~~~-~~---~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~al~~~~v~~~i~~Ia~~ia~l~~~~~~~~~~ 74 (416) T protein:vir:12 2 LLERMFEKRSG-SS---DHEDGFNNILLNMF---GGRKTASGERVSESNSLVQPDIFACVNVLSDDIAKLPIHTYKRTDG 74 (416) T ss_pred ccchhcccccC-cc---ccCccchhHHHHhh---cCcccccCceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCC Confidence 4433 333211 11 11111111111111 2334566788999999999999999999999999999999998888 Q ss_pred ccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEec Q lcl|Aclame:pro 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITP 159 (454) Q Consensus 80 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~ 159 (454) |......|+.+..|+.+||++||+.+||+.++.+++++||||++++|+..|++.+||||+|++|++..+.++...++.+. T Consensus 75 ~~~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~ 154 (416) T protein:vir:12 75 GIERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHGYPEALFPLRPDYTNAYVHPTTGMLWYQTV 154 (416) T ss_pred ccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEeCCCcEEEEEEe Confidence 87777777788888899999999999999999999999999999999999999999999999999998776554443332 Q ss_pred cccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHH Q lcl|Aclame:pro 160 DRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKL 239 (454) Q Consensus 160 ~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~ 239 (454) . .+..+.+++++|||++.. +.++++|+||+.++...+....++++++.++|+||+.|+++|+++..+++++.+++ T Consensus 155 ~----~g~~~~~~~~eiih~~~~-~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~e~~~~~ 229 (416) T protein:vir:12 155 L----NGKAIELYDYEVLHFKGL-STDGIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILKVPAFLDEKPKENV 229 (416) T ss_pred c----CCeEEEecCccEEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCCCCCHHHHHHH Confidence 1 235678999999999965 56789999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHH Q lcl|Aclame:pro 240 KSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQ 319 (454) Q Consensus 240 ~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~ 319 (454) ++.|+... ++++++|+++|++|++++++++|+||+|.+++++++||++|||||++||..+.++++|+|++.++|+++ T Consensus 230 ~~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~ 306 (416) T protein:vir:12 230 RKEWKRVN---KVENIAIIDYGLEYQSISMPLQEAQFVESMKFNKAQISMIYKVPLHKLNELDKATFSNIEHQSIEYVRN 306 (416) T ss_pred HHHHHHHh---cCCCeeecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCccCCCcccHHHHHHHHHHH Confidence 99998765 467899999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhhcCcc----cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccc Q lcl|Aclame:pro 320 CLQTLIESIELLLDEALETGE----NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQ 395 (454) Q Consensus 320 ~i~P~~~~ie~~l~~~l~~~~----~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~ 395 (454) ||.|++++|+++||++|+++. +++++||++++++.|.+++++++.+++++|++|+||+|+++|+||+||||+++++ T Consensus 307 ~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~Pi~ggd~~~~~ 386 (416) T protein:vir:12 307 TLQPWIVNFEQELNVKLFLDHDQKSGHYVKFNIDSELRGDSKTQAEYLKTLHETGVLNKDEIRELLERNPIENGDKYISS 386 (416) T ss_pred HHHHHHHHHHHHHHHhhcCchhhcCCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeec Confidence 999999999999999999753 4689999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccccccCCCccCcccCCCCCCcccCc Q lcl|Aclame:pro 396 QQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDG 432 (454) Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 432 (454) .|+++++...+......+....+ .+..++| T Consensus 387 ~n~~~~~~~~~~~~~~~~~~~~g-------ge~~~~g 416 (416) T protein:vir:12 387 LNYVFLDFLEEYQRLKAGGAMKG-------GDNKNEG 416 (416) T ss_pred cccccccccchhhccccccccCC-------CCCcCCC Confidence 99999987655443322211111 1111112 No 27 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=100.00 E-value=4.4e-93 Score=526.90 Aligned_cols=423 Identities=25% Similarity=0.361 Sum_probs=344.5 Q ss_pred Ccchh----hhhcccccc--ccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEE Q lcl|Aclame:pro 1 MWNLL----RRTRKNQKS--GRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLM 74 (454) Q Consensus 1 m~n~f----~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~ 74 (454) |=-.+ .|...+-.. ..+.+. ....++.. .....+.++..|+.+.|+++++|++||++||++||++||++| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~g~~~s~-~~~~~~~~---~~~~~~~~g~~v~~~~al~~~~v~~ci~~Ia~~ia~lp~~~~ 76 (437) T protein:vir:10 1 MKQGKQRALGRIKSSFLKWLGVPISL-TDGSFWSA---WGGMGSSSGETVTADSALQLSAVWSCVRLIAETIATLPLNLY 76 (437) T ss_pred CCcchhhhhhhhHHhhhhhcCCcccC-CchhHHHh---hcccccCCCceechHhhhccHHHHHHHHHHHHHHhhCceeEE Confidence 22111 111111001 111111 01111111 123344567889999999999999999999999999999999 Q ss_pred eccccccceehhhh-HHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCce Q lcl|Aclame:pro 75 QTDAQGIRRETRRG-DIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEV 153 (454) Q Consensus 75 ~~~~~~~~~~~~~~-~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~ 153 (454) +.+++|......+| .+.+|+.+||++||+++||+.++.+++++||+|++++|+ .|.+++|||++|+.|++..+.+|.. T Consensus 77 ~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~-~g~~~~L~~l~p~~v~i~~~~~g~~ 155 (437) T protein:vir:10 77 QTKPDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRS-AGVLIGLELMLPQRTTVKRLTSGAL 155 (437) T ss_pred EEcCCCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCcceEEEECCCCeE Confidence 98888876554444 556667899999999999999999999999999999998 4999999999999999999988888 Q ss_pred eeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCH Q lcl|Aclame:pro 154 FYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITE 233 (454) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~ 233 (454) .|+|+... +....+++++|||++.. +.++++|+||+..+...|....++++++.++|+||++|+++|+++..+++ T Consensus 156 ~y~~~~~~----g~~~~~~~~dIih~r~~-~~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~ 230 (437) T protein:vir:10 156 QYTYRNVD----GTVSTLAEDDVFHVRGF-SLDGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTDQILQK 230 (437) T ss_pred EEEEEecC----ceEEEEccccEEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCH Confidence 88776432 34578999999999965 46889999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccc--cCHH Q lcl|Aclame:pro 234 ENAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS--DNVE 310 (454) Q Consensus 234 e~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~--~n~e 310 (454) ++.+++++.|++.++| .|+|+++||++|++|++++++++|+||+|++++++++||++|||||.+||..+.+++ +|+| T Consensus 231 e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e 310 (437) T protein:vir:10 231 EKRAEIRTDLAEQFGGAMQAGKTMVLEAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSEKSTSWGTGIE 310 (437) T ss_pred HHHHHHHHHHHHHhcCccccCcceeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHH Confidence 9999999999999987 689999999999999999999999999999999999999999999999999877654 8899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcc---cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCC Q lcl|Aclame:pro 311 ALEQQYYSQCLQTLIESIELLLDEALETGE---NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLA 387 (454) Q Consensus 311 ~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~---~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~ 387 (454) ++...|+++||.|++..||++||++|+++. ..+++||++.+++.|.+++++++.+++++|+||+||+|+++|+||+| T Consensus 311 ~~~~~f~~~tl~P~~~~ie~~l~~kll~~~e~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ 390 (437) T protein:vir:10 311 QQTLGFLTFTLRPWLTRIEQAARRSLLRPGERDQFYAEFSVEGLLRADSAGRAAFYSTMTQNGLMTRDECRAKENLPPMG 390 (437) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 999999999999999999999999999764 34789999999999999999999999999999999999999999999 Q ss_pred Ccccc-ccccccccccccccccccccCCCccCcccCCCCCCcccCccc Q lcl|Aclame:pro 388 GGDAL-YLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNK 434 (454) Q Consensus 388 ~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 434 (454) |++.+ +++.++++++..+..........+ .+....+.++...|.++ T Consensus 391 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~ 437 (437) T protein:vir:10 391 GNAAVLTVQSALLPIDKLGEHTTATAAQDA-LKAWLYQEEKTRATQER 437 (437) T ss_pred CCcceEeecCcccchhhccCcCCCcchhcc-ccccCCCCCCCCccccC Confidence 87764 578899988766554333222211 11112222222222222 No 28 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=100.00 E-value=5.6e-93 Score=526.35 Aligned_cols=411 Identities=23% Similarity=0.331 Sum_probs=344.9 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) || |+|..............+|.+.+- ....+.++..|+.+.|+++++|++||++||+++|++|+++|+.++++ T Consensus 1 m~--~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~s~~~~~v~~~~al~~~~v~~cv~~ia~~ia~lp~~~~~~~~~~ 73 (419) T protein:vir:80 1 MF--FSRQLLSNLGQTQPGSGGWVSALL-----GSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDD 73 (419) T ss_pred CC--cccccccccCcCCCCcchhhHHhh-----cccccccCcccChHHhhccHHHHHHHHHHHHhhccCceEEEEecCCC Confidence 65 222222111111122233332111 12345678899999999999999999999999999999999999888 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) +.....++.+.+|+.+||++||+.+||+.++.+++++||+|++++|+.+|++.+||||+|++|++..+.++...|++... T Consensus 74 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~i~~~~v~i~~~~~~~~~y~~~~~ 153 (419) T protein:vir:80 74 RKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAGA 153 (419) T ss_pred cccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceEEEEEcCc Confidence 77776777777788899999999999999999999999999999999999999999999999999999888777766421 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccC----CHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI----TEENA 236 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~----s~e~~ 236 (454) ..++.++|+|+++. +.++++|+||+..+...|....++++++.++|+||+.|+++|+++... ++++. T Consensus 154 --------~~~~~~~i~h~~~~-~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~ 224 (419) T protein:vir:80 154 --------DPLPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASV 224 (419) T ss_pred --------cccchhheEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCHHHH Confidence 24789999999975 568899999999999999999999999999999999999999987543 67889 Q ss_pred HHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH Q lcl|Aclame:pro 237 KKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ 315 (454) Q Consensus 237 ~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~ 315 (454) +++++.|++.++| .|+|++++|++|++|+++++++.|+||+|.+++++++||++|||||.+||..++++++|+|++... T Consensus 225 ~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~~Ia~~fgVPp~llg~~~~~t~~n~e~~~~~ 304 (419) T protein:vir:80 225 DRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQ 304 (419) T ss_pred HHHHHHHHHHhcCccccCCceecCCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHH Confidence 9999999999988 589999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcc---cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccc Q lcl|Aclame:pro 316 YYSQCLQTLIESIELLLDEALETGE---NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDAL 392 (454) Q Consensus 316 ~~~~~i~P~~~~ie~~l~~~l~~~~---~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~ 392 (454) |+++||.|+++.||++||++|+++. +++++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+||||.+ T Consensus 305 f~~~~l~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~gGD~~ 384 (419) T protein:vir:80 305 FVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIY 384 (419) T ss_pred HHHHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCccee Confidence 9999999999999999999998753 5678999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccccccccccCCCccCcccCCCCCCcccCcccccccccccHHHHHHHHHhc Q lcl|Aclame:pro 393 YLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDAVKAMFRGILK 453 (454) Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a~~~~~~~ 453 (454) ++|+|+++++...+....+.. + ..+.-+.+++++- T Consensus 385 ~~~~n~~~~~~~~~~~~~~~~-------------~-------------~~~~~~~~~~~l~ 419 (419) T protein:vir:80 385 LSPMNMVDASKPQPIPMGKTE-------------P-------------TKAALDEIGRILS 419 (419) T ss_pred eeccccccccccccccCCCCC-------------c-------------hhhhHHHHHhhcC Confidence 999988765433221111000 0 0111233344444 No 29 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=100.00 E-value=6.1e-92 Score=520.67 Aligned_cols=412 Identities=15% Similarity=0.257 Sum_probs=335.2 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +.++|++.++ ++......+....+..+. .....++..++...|+++++|++||++||+++|++|+++++.+ T Consensus 25 ~~~~f~~~e~---r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~al~~~~V~acv~~Ia~~iA~lpl~~~~~~--- 95 (441) T protein:vir:98 25 VVGIFYKNEK---RDLQYNEDDLQMMVQTLP---GFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNG--- 95 (441) T ss_pred cccccccccc---ccccCCCcchHHHHHHhh---cccccCccccchhhhhccHHHHHHHHHHHHhhccCceEEecCC--- Confidence 4444443222 221222222222222221 1223345678899999999999999999999999999998532 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) .....++.+.+|+.+||++||+.+||+.++.+++++||||++++|+.+|++++|+|++|+.|++..+.+|...|+++.. T Consensus 96 -~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~ 174 (441) T protein:vir:98 96 -QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKLDARGRLYYFHQRI 174 (441) T ss_pred -cccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEECCCCcEEEEEEEe Confidence 2334566777788899999999999999999999999999999999999999999999999999999999888877665 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCC-HHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSIT-EENAKKL 239 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s-~e~~~~~ 239 (454) .....+....+++++|||++++ +.++++|+||+..+..+|.+..++++++.++|+||++|+++|++++.++ +++.+++ T Consensus 175 ~~~~~~~~~~~~~~dviHir~~-~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~~~~~e~~~~~ 253 (441) T protein:vir:98 175 DSNGNNIERNVKFEDMLDIKFY-SLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRA 253 (441) T ss_pred ccCcceeeEEEccccEEEeccC-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHH Confidence 4444556678999999999965 5688999999999999999999999999999999999999999998875 6778999 Q ss_pred HHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHH Q lcl|Aclame:pro 240 KSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYS 318 (454) Q Consensus 240 ~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~ 318 (454) ++.|++.++| +|+|+++||++|++|++++++++|+||+|.+++++++||++|||||++||.... + ++.+++...|. T Consensus 254 ~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~-~-~s~~q~~~~y~- 330 (441) T protein:vir:98 254 REEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA-N-MSITDANLDYL- 330 (441) T ss_pred HHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCC-C-ccHHHHHHHHH- Confidence 9999999987 789999999999999999999999999999999999999999999999986433 3 35567666665 Q ss_pred HHHHHHHHHHHHHHHHhhcCcc-cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccc--cccc Q lcl|Aclame:pro 319 QCLQTLIESIELLLDEALETGE-NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDA--LYLQ 395 (454) Q Consensus 319 ~~i~P~~~~ie~~l~~~l~~~~-~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~--~~~~ 395 (454) +||.|++++||++||++|++.. +++++||++.+++.|.+++++++++++++|++|+||+|+++|+||+||||. ++++ T Consensus 331 ~tl~P~~~~ie~~ln~~L~~~~~~~~~~fd~~~llr~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGd~~~~~~~ 410 (441) T protein:vir:98 331 STLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVD 410 (441) T ss_pred HHHHHHHHHHHHHHHhhccccccCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeec Confidence 6999999999999999998754 568999999999999999999999999999999999999999999999985 6789 Q ss_pred cccccccccccccccccCCCccCcccCCCCCCcccC Q lcl|Aclame:pro 396 QQNYSLEALSRRDAREDPFASSGKTASVPQAVAASD 431 (454) Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 431 (454) .|+++++..+.....+........ +..++++ T Consensus 411 ~n~~~~~~~~~~q~~~~~~~~~~~-----kgGe~ne 441 (441) T protein:vir:98 411 LNHVNIELVDEYQMNKSRATDKKL-----KGGEENE 441 (441) T ss_pred cccccccccccccccccccccccc-----CCCCCCC Confidence 999998876443222211111110 1111111 No 30 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=100.00 E-value=1.4e-91 Score=518.70 Aligned_cols=415 Identities=15% Similarity=0.246 Sum_probs=333.5 Q ss_pred Ccchhhhhccc------------cccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MWNLLRRTRKN------------QKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAK 68 (454) Q Consensus 1 m~n~f~r~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~ 68 (454) ..||+.|+... +++.......+... +...........+..++.+.|+++++|++||++||++||+ T Consensus 10 ~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~~iA~ 86 (441) T protein:vir:94 10 FVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQM---MVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLAR 86 (441) T ss_pred cccccccccchhhhhccccccccccccccCCCcchHH---HHHHhcccCcccccccchhhhhccHHHHHHHHHHHHhhcc Confidence 33444333221 11221111111111 1111122223345678889999999999999999999999 Q ss_pred cceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEEC Q lcl|Aclame:pro 69 MRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVA 148 (454) Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~ 148 (454) +|+++++.. .....++.+.+|+.+||++||+.+||+.++.+++++||||++++|+.+|++++|+||+|+.|++..+ T Consensus 87 lp~~~~~~~----~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d 162 (441) T protein:vir:94 87 MPIRVTVNG----QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSD 162 (441) T ss_pred CceeeecCc----cccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEC Confidence 999998522 2334566777778899999999999999999999999999999999999999999999999999999 Q ss_pred CCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecC Q lcl|Aclame:pro 149 DDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIP 228 (454) Q Consensus 149 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~ 228 (454) .+|...|+++.......+....+++++|||+++. +.++++|+||+..+..+|.+..++++++.++|+||++|+++|+++ T Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~~~~dvih~k~~-~~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~ 241 (441) T protein:vir:94 163 ARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFY-SLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMK 241 (441) T ss_pred CCccEEEEEEEeccCCceeEEEEccccEEEeccC-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcC Confidence 9998888776554444555678999999999965 578899999999999999999999999999999999999999999 Q ss_pred ccCC-HHHHHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccc Q lcl|Aclame:pro 229 GSIT-EENAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS 306 (454) Q Consensus 229 ~~~s-~e~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~ 306 (454) +..+ +++.+++++.|++.++| .|+|+++||++|++|++++++++|+||+|.+++++++||++|||||.+||.... ++ T Consensus 242 ~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~~ 320 (441) T protein:vir:94 242 GVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA-NM 320 (441) T ss_pred CCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCC-Cc Confidence 8874 67889999999999988 689999999999999999999999999999999999999999999999987433 33 Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCC Q lcl|Aclame:pro 307 DNVEALEQQYYSQCLQTLIESIELLLDEALETGE-NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPP 385 (454) Q Consensus 307 ~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~-~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p 385 (454) +.+++...| .+||.|++++||++||++|++.. +++++||++.+++.|.+++++.+.+++++|++|+||+|+++|+|| T Consensus 321 -s~~q~~~~~-~~tl~P~~~~ie~eln~kl~~~~~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~P 398 (441) T protein:vir:94 321 -SITDANLDY-LSTLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAP 398 (441) T ss_pred -cHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC Confidence 456665555 56999999999999999998653 578999999999999999999999999999999999999999999 Q ss_pred CCCccc--cccccccccccccccccccccCCCccCcccCCCCCCcccC Q lcl|Aclame:pro 386 LAGGDA--LYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASD 431 (454) Q Consensus 386 ~~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 431 (454) +||||. ++++.|+++++..+.....+........ ...++++ T Consensus 399 i~ggd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-----kgGe~~e 441 (441) T protein:vir:94 399 IPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKL-----KGGEENE 441 (441) T ss_pred CCCCCcceEeeccccccccccccccccccccccccc-----CCCCCCC Confidence 999985 6789999998876443222211111100 1111111 No 31 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=100.00 E-value=1.4e-91 Score=518.70 Aligned_cols=415 Identities=15% Similarity=0.246 Sum_probs=333.5 Q ss_pred Ccchhhhhccc------------cccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MWNLLRRTRKN------------QKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAK 68 (454) Q Consensus 1 m~n~f~r~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~ 68 (454) ..||+.|+... +++.......+... +...........+..++.+.|+++++|++||++||++||+ T Consensus 10 ~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~~iA~ 86 (441) T protein:vir:79 10 FVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQM---MVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLAR 86 (441) T ss_pred cccccccccchhhhhccccccccccccccCCCcchHH---HHHHhcccCcccccccchhhhhccHHHHHHHHHHHHhhcc Confidence 33444333221 11221111111111 1111122223345678889999999999999999999999 Q ss_pred cceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEEC Q lcl|Aclame:pro 69 MRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVA 148 (454) Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~ 148 (454) +|+++++.. .....++.+.+|+.+||++||+.+||+.++.+++++||||++++|+.+|++++|+||+|+.|++..+ T Consensus 87 lp~~~~~~~----~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d 162 (441) T protein:vir:79 87 MPIRVTVNG----QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSD 162 (441) T ss_pred CceeeecCc----cccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEC Confidence 999998522 2334566777778899999999999999999999999999999999999999999999999999999 Q ss_pred CCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecC Q lcl|Aclame:pro 149 DDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIP 228 (454) Q Consensus 149 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~ 228 (454) .+|...|+++.......+....+++++|||+++. +.++++|+||+..+..+|.+..++++++.++|+||++|+++|+++ T Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~~~~dvih~k~~-~~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~ 241 (441) T protein:vir:79 163 ARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFY-SLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMK 241 (441) T ss_pred CCccEEEEEEEeccCCceeEEEEccccEEEeccC-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcC Confidence 9998888776554444555678999999999965 578899999999999999999999999999999999999999999 Q ss_pred ccCC-HHHHHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccc Q lcl|Aclame:pro 229 GSIT-EENAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS 306 (454) Q Consensus 229 ~~~s-~e~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~ 306 (454) +..+ +++.+++++.|++.++| .|+|+++||++|++|++++++++|+||+|.+++++++||++|||||.+||.... ++ T Consensus 242 ~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~~ 320 (441) T protein:vir:79 242 GVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA-NM 320 (441) T ss_pred CCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCC-Cc Confidence 8874 67889999999999988 689999999999999999999999999999999999999999999999987433 33 Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCC Q lcl|Aclame:pro 307 DNVEALEQQYYSQCLQTLIESIELLLDEALETGE-NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPP 385 (454) Q Consensus 307 ~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~-~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p 385 (454) +.+++...| .+||.|++++||++||++|++.. +++++||++.+++.|.+++++.+.+++++|++|+||+|+++|+|| T Consensus 321 -s~~q~~~~~-~~tl~P~~~~ie~eln~kl~~~~~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~P 398 (441) T protein:vir:79 321 -SITDANLDY-LSTLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAP 398 (441) T ss_pred -cHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC Confidence 456665555 56999999999999999998653 578999999999999999999999999999999999999999999 Q ss_pred CCCccc--cccccccccccccccccccccCCCccCcccCCCCCCcccC Q lcl|Aclame:pro 386 LAGGDA--LYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASD 431 (454) Q Consensus 386 ~~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 431 (454) +||||. ++++.|+++++..+.....+........ ...++++ T Consensus 399 i~ggd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-----kgGe~~e 441 (441) T protein:vir:79 399 IPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKL-----KGGEENE 441 (441) T ss_pred CCCCCcceEeeccccccccccccccccccccccccc-----CCCCCCC Confidence 999985 6789999998876443222211111100 1111111 No 32 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=100.00 E-value=4.2e-91 Score=516.06 Aligned_cols=406 Identities=19% Similarity=0.299 Sum_probs=336.2 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +++|.|.++.+.......... ++.......+..+..++.+.|+++++|++||++||+++|++||++|+.+++++ T Consensus 1 Mgl~~~~f~~~~~~~~~~~~~------~~~~~~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~ 74 (409) T protein:vir:84 1 MSLFTRIFSGPSEERTLTKIS------GIPSPAEDWAMHGDRPGANSAMTLGAFYACVTLLADTVASLSIDAYRKKDNVR 74 (409) T ss_pred CchhhhhhcCCCccccccccc------ccccccchhhccCcccchhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCcc Confidence 566655544432222221111 11111222344567788999999999999999999999999999998665543 Q ss_pred ceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEe-eCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 82 RRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKI-RNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 82 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~-r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) ...++.+.+|+.+||++||+.+||+.++.+++++||+|+++. ++..|++.+||||+|++|++....++...+++..+ T Consensus 75 --~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g~~~~L~~l~p~~v~v~~~~~~~~~~~~~~~ 152 (409) T protein:vir:84 75 --IPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEANRPTAIMPIHPDCIHVTDAKDEDGDWIEPVY 152 (409) T ss_pred --cccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCCceEEEEEEcCceeEEEEcCCCcceEEEEEe Confidence 334666777778999999999999999999999999999985 77889999999999999999876554433332222 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~ 240 (454) .. ....+++++|||+++.++.+.++|+||+..+...|....++++++.++|+||++|+++|++++.+++++.++++ T Consensus 153 ~~----~g~~~~~~dvih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~ 228 (409) T protein:vir:84 153 RI----DGKVVPNHRIMHIKRYPVAGCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSDADLTPDQVKQTQ 228 (409) T ss_pred cC----CceEEchhhEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHH Confidence 11 12458999999999988888889999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccc--cCHHHHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS--DNVEALEQQYYS 318 (454) Q Consensus 241 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~--~n~e~~~~~~~~ 318 (454) +.|.+.+ .|+|+++||++|++|++++++++|+||+|.+++.+++||++|||||++||..+.+++ +|+|++...|++ T Consensus 229 ~~~~~~~--~n~g~~~vl~~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~e~~~~~f~~ 306 (409) T protein:vir:84 229 KQWIQSH--HNRRLPAVMSAGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMIGDVEKSTSWGTGIEEQGINFVR 306 (409) T ss_pred HHHHHHh--ccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHHHHH Confidence 9998877 468899999999999999999999999999999999999999999999998776654 789999999999 Q ss_pred HHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccccccccc Q lcl|Aclame:pro 319 QCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQN 398 (454) Q Consensus 319 ~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~ 398 (454) +||.|+++.||++||++|. .+.+++||++.+++.|.+++++++.+++++|++|+||+|+++|+||+||||.+++|.|+ T Consensus 307 ~~l~P~~~~ie~~l~~~L~--~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~ggD~~~~~~n~ 384 (409) T protein:vir:84 307 HTLLPWLRCIEQALDTFLP--RGQFVKFNVDGLMRGDVTARFTAYQMGLQNGIWSVNEVRAWEDAPPIPEGDIHLQPMNF 384 (409) T ss_pred HHHHHHHHHHHHHHHHhcc--CCCeEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccc Confidence 9999999999999999984 46789999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccccCCCccCcccCCCCCCcccCccc Q lcl|Aclame:pro 399 YSLEALSRRDAREDPFASSGKTASVPQAVAASDGNK 434 (454) Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 434 (454) ++++.....+.. ..+++...+++++ T Consensus 385 ~~~~~~~~~~~~-----------~~~~~~~~~~gn~ 409 (409) T protein:vir:84 385 VPLGYVPPEEPA-----------QEPQPNSATEGNK 409 (409) T ss_pred cccccCCccccC-----------cCCCCCCccCCCC Confidence 988764332221 1122333334444 No 33 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=100.00 E-value=6.9e-91 Score=514.88 Aligned_cols=407 Identities=17% Similarity=0.225 Sum_probs=331.1 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +|+|+|..-..+...+............+..+......++..++.+.|+++|+|++||++||+++|++||++++.++. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~v~~~i~~ia~~iA~lp~~~~~~~~~-- 78 (412) T protein:vir:26 1 MNVIAKENIVTRIKKKLIDNWIDQSTSKLYDFSPWKNRSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV-- 78 (412) T ss_pred CccchhhhhhhhhhhhHhhhhhcccccccccccccCCccccccchhhhhccHHHHHHHHHHHHhHhhCceeEeecccc-- Confidence 888865211110000000000000001111111111234556788999999999999999999999999999975543 Q ss_pred ceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCc-eeeEEecc Q lcl|Aclame:pro 82 RRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE-VFYRITPD 160 (454) Q Consensus 82 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~-~~~~~~~~ 160 (454) ..++...+|+.+||++||+++||+.++.+|+++||+|++++|+.+|.+.+|+|++|+.|++..+.++. ..|.+... T Consensus 79 ---~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~ 155 (412) T protein:vir:26 79 ---VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAA 155 (412) T ss_pred ---ccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcC Confidence 34566777788999999999999999999999999999999999999999999999999999987654 44444322 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~ 240 (454) .+..+.++++||||+++.++.++++|+||+..+...|.+..++.++. ++.++..++++++.+..+++++.++++ T Consensus 156 ----~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~a~~~~~--~~~~~~~~~~i~~~~~~l~~e~~~~~~ 229 (412) T protein:vir:26 156 ----TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSNVGKEKRQQVL 229 (412) T ss_pred ----CceEEEEccccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEecCCCCCHHHHHHHH Confidence 24567899999999998889999999999999999999999998884 555666678888999999999999999 Q ss_pred HHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQC 320 (454) Q Consensus 241 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~ 320 (454) ++|++.++ ++|++++|++|+++++++++++|+||+|.+++++++||++|||||.+||+.++++++|+|++.+.|+++| T Consensus 230 ~~~~~~~~--~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~sn~e~~~~~f~~~~ 307 (412) T protein:vir:26 230 EDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHT 307 (412) T ss_pred HHHHHHhh--cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHH Confidence 99999875 5778999999999999999999999999999999999999999999999998999999999999999999 Q ss_pred HHHHHHHHHHHHHHhhcCcc----cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccccccc Q lcl|Aclame:pro 321 LQTLIESIELLLDEALETGE----NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQ 396 (454) Q Consensus 321 i~P~~~~ie~~l~~~l~~~~----~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~ 396 (454) |.|++++|+++||++|+++. +.+++||++++++.|.+++++.+++++++|++|+||+|+++|+||+||||.+++++ T Consensus 308 l~P~~~~ie~~ln~kLl~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~ 387 (412) T protein:vir:26 308 LLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISG 387 (412) T ss_pred HHHHHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecc Confidence 99999999999999999764 46799999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccccccCCCccCcccCCCCC Q lcl|Aclame:pro 397 QNYSLEALSRRDAREDPFASSGKTASVPQA 426 (454) Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (454) |+++++..........+... ..+++ T Consensus 388 n~~~~~~~~~~~~~~~gG~~-----n~~e~ 412 (412) T protein:vir:26 388 DLYPIDTPLELRKSLKGGDK-----NVNES 412 (412) T ss_pred cccccccchhhcccccCCCC-----CcCCC Confidence 99998654332211111100 00000 No 34 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=100.00 E-value=3.1e-90 Score=511.34 Aligned_cols=410 Identities=14% Similarity=0.167 Sum_probs=340.9 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) |+|++.|..+..+... ...+.....+.+..+.+...++..++...|+++|+|++||++||+++|++||++|+..++| T Consensus 1 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~v~~~v~~ia~~iA~lp~~v~~~~~~g 77 (460) T protein:vir:10 1 MANRIIRALRELTGLD---NKFNDAFIKYIGQTFTKYDNNGKTYLEQGYNINPDVYSCISQMAAKTVAVPYTIKVVKDTK 77 (460) T ss_pred CchhHHHHHhhhhccC---CCchHHHHHhhccccCCCccchhhhhHHHHhcchHHHHHHHHHHHhhhhCceEEEeccCCc Confidence 9999998875433221 1222233455565566666678889999999999999999999999999999999988877 Q ss_pred cce---------------------------ehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC----C Q lcl|Aclame:pro 81 IRR---------------------------ETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA----R 129 (454) Q Consensus 81 ~~~---------------------------~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~----~ 129 (454) ... ...++....|+.+||++||+.+||+.++.+++++||||++++|+. . T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~~~~~ 157 (460) T protein:vir:10 78 AYQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYFYLMSPDDGINA 157 (460) T ss_pred cchhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCccC Confidence 432 233456678899999999999999999999999999999999965 4 Q ss_pred CceeEEEEecCcceEEEECCCCceeeEE---eccccccccceeEEehhheEEeecCCCc-----CcccccchhhhhHhHH Q lcl|Aclame:pro 130 GQIKELRILDWNRVEPLVADDGEVFYRI---TPDRNCGITEAVTVPAREVIHDRFNCFF-----HPLIGLPPVYAAGLAA 201 (454) Q Consensus 130 G~~~~l~~l~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~vih~~~~~~~-----~~~~G~s~l~~~~~~i 201 (454) |.+.+||||+|+.|++..+.++...++. ..+.....+....+++++|||+|++++. ++++|+||+..+...| T Consensus 158 G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~~~~~~G~sp~~~~~~~i 237 (460) T protein:vir:10 158 GVPSQMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLIQGDQFIEFNEDEVIHTKYANPNFDLQGSHLYGMSPIRAILRNI 237 (460) T ss_pred ceeEEEEEEcCceEEEEEcCCCceeeeeeeeeEEEEecCceeEEecccceEEEecCCCCcccccCccccccHHHHHHHHH Confidence 7899999999999999998887544321 1111123456688999999999987665 4679999999999999 Q ss_pred HHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHH Q lcl|Aclame:pro 202 TQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQL 280 (454) Q Consensus 202 ~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~ 280 (454) ....++++++.++|+||+.|+++++.+..+++++.+++++.|++.++| +|+|++++|++|++|++++++++|+||+|.+ T Consensus 238 ~~~~~~~~~~~~~f~ng~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~ 317 (460) T protein:vir:10 238 NSQNSTIDNNVKTMQNGGVFGFIHGGSTGLTQPQADSLKQRLTEMDKSPDRLSQIAGASGEIAFTKISLNTDELKPFDYL 317 (460) T ss_pred HHHHHHHHHHHHHHhcCCCcceeeecCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHHH Confidence 999999999999999999999999999999999999999999999987 6899999999999999999999999999999 Q ss_pred HHHHHHHHHHhccchhhhccccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc----cceeeecchhh--h Q lcl|Aclame:pro 281 KMTAEIVCSVFRVPAYKIGVGQP--PSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGE----NESTEFDVTTL--L 352 (454) Q Consensus 281 ~~~~~~Ia~~fgvp~~~lg~~~~--~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~----~~~~~f~~~~l--~ 352 (454) ++.+++||++|||||++||..+. .+++|+|++...|+++||.|+++.||++||++|++.. +++++||++.+ + T Consensus 318 ~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~~~~i~~d~~~l~~l 397 (460) T protein:vir:10 318 KYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNIQPDLVILKQAFDKKFIKRFKGYENAVIEWDISELPEM 397 (460) T ss_pred HHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCceEEeecchhhhH Confidence 99999999999999999998754 4689999999999999999999999999999999754 45688998887 4 Q ss_pred hcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCC--CCccccccccccccccccccccccccCCCccCc Q lcl|Aclame:pro 353 RMDSERRMKTLGDAVKNTLLTPNEARKRENLPPL--AGGDALYLQQQNYSLEALSRRDAREDPFASSGK 419 (454) Q Consensus 353 ~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (454) +.|.++ ...++++|++|+||+|+++|+||+ ++||.+++++|+++++..++........++ + T Consensus 398 ~~d~~~----~~~~~~~g~~T~NE~R~~~g~~pi~~~~gD~~~~~~n~~~~~~~~~~~~~~~~nq~--~ 460 (460) T protein:vir:10 398 QTDMVA----MASWLNTIPVTPNEIRIAMKYETLNQDGMDIVFMPSNKVRIDDVSNNLIDSAFNQN--Q 460 (460) T ss_pred HHHHHH----HHHHHhCCCCCHHHHHHHhCCCCCCCCCCCeeeecccccchhhcccccCCCcccCC--C Confidence 444444 345778999999999999999998 579999999999999765432111111110 0 No 35 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=100.00 E-value=8e-90 Score=509.06 Aligned_cols=411 Identities=15% Similarity=0.247 Sum_probs=334.9 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +.||+|..+... ......+.+ +...........+..++...|+++++|++||++||+++|++||++++.+ T Consensus 1 Mg~f~~~~~r~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~iA~~p~~~~~~~---- 70 (416) T protein:vir:81 1 MGIFYKNEKRDL---QYNEDDLQM---MVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNG---- 70 (416) T ss_pred CCcccccccccc---cCCCcchhH---HHHHhccccccCccccchhhhhcchHHHHHHHHHHHhhccCceEEecCc---- Confidence 566655433221 111122212 2222222234456778899999999999999999999999999998532 Q ss_pred ceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEeccc Q lcl|Aclame:pro 82 RRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPDR 161 (454) Q Consensus 82 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~ 161 (454) .....++.+++|+.+||++||+.+||+.++.+++++||||++++|+.+|++++||||+|++|++..+.+|...|++.... T Consensus 71 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~ 150 (416) T protein:vir:81 71 QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRID 150 (416) T ss_pred cccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEec Confidence 23345666777788999999999999999999999999999999999999999999999999999999998887776554 Q ss_pred cccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCC-HHHHHHHH Q lcl|Aclame:pro 162 NCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSIT-EENAKKLK 240 (454) Q Consensus 162 ~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s-~e~~~~~~ 240 (454) ....+....+++++|||+++. +.++++|+||+..+...|+...++++++.++|+||+.|+++|++++..+ +++.++++ T Consensus 151 ~~~~~~~~~~~~~evihir~~-~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~ 229 (416) T protein:vir:81 151 SNGNNIERNVKFEDMLDIKFY-SLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAR 229 (416) T ss_pred CCCceeEEEEccccEEEeccC-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHH Confidence 444455678999999999965 5688999999999999999999999999999999999999999998875 67789999 Q ss_pred HHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQ 319 (454) Q Consensus 241 ~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~ 319 (454) +.|++.++| .|+|+++||++|++|++++++++|+||+|.+++++++||++|||||.++|.... + ++.+++...| .+ T Consensus 230 ~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~-~~~~~~~~~~-~~ 306 (416) T protein:vir:81 230 EEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA-N-MSITDANLDY-LS 306 (416) T ss_pred HHHHHHhcCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC-C-ccHHHHHHHH-HH Confidence 999999988 689999999999999999999999999999999999999999999999987433 2 3455665555 56 Q ss_pred HHHHHHHHHHHHHHHhhcCcc-cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccc--ccccc Q lcl|Aclame:pro 320 CLQTLIESIELLLDEALETGE-NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDA--LYLQQ 396 (454) Q Consensus 320 ~i~P~~~~ie~~l~~~l~~~~-~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~--~~~~~ 396 (454) ||.|++++|+++||++|++.. +++++||++.+++.|.+++++++.+++++|+||+||+|+++|+||+||||. +++++ T Consensus 307 ~l~P~~~~ie~~ln~~l~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~ 386 (416) T protein:vir:81 307 TLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDL 386 (416) T ss_pred HHHHHHHHHHHHHhhhccccccCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecc Confidence 999999999999999998763 568999999999999999999999999999999999999999999999984 67899 Q ss_pred ccccccccccccccccCCCccCcccCCCCCCcccC Q lcl|Aclame:pro 397 QNYSLEALSRRDAREDPFASSGKTASVPQAVAASD 431 (454) Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 431 (454) |+++++...................+ +.++ T Consensus 387 n~~~~~~~~~~~~~~~~~~~~~~kgG-----e~n~ 416 (416) T protein:vir:81 387 NHVNIELVDEYQMNKSRATDKKLKGG-----EENE 416 (416) T ss_pred cccccccccccCcccccccccccCCC-----CCCC Confidence 99999866443222222111111111 1111 No 36 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=100.00 E-value=8e-90 Score=509.06 Aligned_cols=411 Identities=15% Similarity=0.247 Sum_probs=334.9 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +.||+|..+... ......+.+ +...........+..++...|+++++|++||++||+++|++||++++.+ T Consensus 1 Mg~f~~~~~r~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~iA~~p~~~~~~~---- 70 (416) T protein:vir:45 1 MGIFYKNEKRDL---QYNEDDLQM---MVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNG---- 70 (416) T ss_pred CCcccccccccc---cCCCcchhH---HHHHhccccccCccccchhhhhcchHHHHHHHHHHHhhccCceEEecCc---- Confidence 566655433221 111122212 2222222234456778899999999999999999999999999998532 Q ss_pred ceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEeccc Q lcl|Aclame:pro 82 RRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPDR 161 (454) Q Consensus 82 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~ 161 (454) .....++.+++|+.+||++||+.+||+.++.+++++||||++++|+.+|++++||||+|++|++..+.+|...|++.... T Consensus 71 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~ 150 (416) T protein:vir:45 71 QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRID 150 (416) T ss_pred cccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEec Confidence 23345666777788999999999999999999999999999999999999999999999999999999998887776554 Q ss_pred cccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCC-HHHHHHHH Q lcl|Aclame:pro 162 NCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSIT-EENAKKLK 240 (454) Q Consensus 162 ~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s-~e~~~~~~ 240 (454) ....+....+++++|||+++. +.++++|+||+..+...|+...++++++.++|+||+.|+++|++++..+ +++.++++ T Consensus 151 ~~~~~~~~~~~~~evihir~~-~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~ 229 (416) T protein:vir:45 151 SNGNNIERNVKFEDMLDIKFY-SLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAR 229 (416) T ss_pred CCCceeEEEEccccEEEeccC-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHH Confidence 444455678999999999965 5688999999999999999999999999999999999999999998875 67789999 Q ss_pred HHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQ 319 (454) Q Consensus 241 ~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~ 319 (454) +.|++.++| .|+|+++||++|++|++++++++|+||+|.+++++++||++|||||.++|.... + ++.+++...| .+ T Consensus 230 ~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~-~~~~~~~~~~-~~ 306 (416) T protein:vir:45 230 EEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA-N-MSITDANLDY-LS 306 (416) T ss_pred HHHHHHhcCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC-C-ccHHHHHHHH-HH Confidence 999999988 689999999999999999999999999999999999999999999999987433 2 3455665555 56 Q ss_pred HHHHHHHHHHHHHHHhhcCcc-cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccc--ccccc Q lcl|Aclame:pro 320 CLQTLIESIELLLDEALETGE-NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDA--LYLQQ 396 (454) Q Consensus 320 ~i~P~~~~ie~~l~~~l~~~~-~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~--~~~~~ 396 (454) ||.|++++|+++||++|++.. +++++||++.+++.|.+++++++.+++++|+||+||+|+++|+||+||||. +++++ T Consensus 307 ~l~P~~~~ie~~ln~~l~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~ 386 (416) T protein:vir:45 307 TLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDL 386 (416) T ss_pred HHHHHHHHHHHHHhhhccccccCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecc Confidence 999999999999999998763 568999999999999999999999999999999999999999999999984 67899 Q ss_pred ccccccccccccccccCCCccCcccCCCCCCcccC Q lcl|Aclame:pro 397 QNYSLEALSRRDAREDPFASSGKTASVPQAVAASD 431 (454) Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 431 (454) |+++++...................+ +.++ T Consensus 387 n~~~~~~~~~~~~~~~~~~~~~~kgG-----e~n~ 416 (416) T protein:vir:45 387 NHVNIELVDEYQMNKSRATDKKLKGG-----EENE 416 (416) T ss_pred cccccccccccCcccccccccccCCC-----CCCC Confidence 99999866443222222111111111 1111 No 37 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=100.00 E-value=2.8e-89 Score=506.05 Aligned_cols=401 Identities=18% Similarity=0.231 Sum_probs=328.3 Q ss_pred Ccchhhhhcccc-ccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQ-KSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 1 m~n~f~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) =-|++.|.+..- ......+........+|. ......++.+.|+++++|++||++||++||++||++++..+. T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~V~~ci~~Ia~~ia~lp~~~~~~~~~ 75 (409) T protein:vir:93 3 KENIVTRIKKKLIDNWIDQSTSKLYDFSPWK-------NRSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV 75 (409) T ss_pred ccchhhhhhhhhhhhhhcccccccccccccc-------CccccccchhhhhccHHHHHHHHHHHHhhhhCceeEeecccc Confidence 123333322210 000011111111111221 123344678889999999999999999999999999975543 Q ss_pred ccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCc-eeeEEe Q lcl|Aclame:pro 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE-VFYRIT 158 (454) Q Consensus 80 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~-~~~~~~ 158 (454) ..++.+.+|+.+||++||+++||+.++.+++++||+|++++|+.+|++.+||||+|+.|++..+.++. .+|.+. T Consensus 76 -----~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~y~~~ 150 (409) T protein:vir:93 76 -----VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIH 150 (409) T ss_pred -----ccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEE Confidence 24666777888999999999999999999999999999999999999999999999999999877665 444443 Q ss_pred ccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHH Q lcl|Aclame:pro 159 PDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKK 238 (454) Q Consensus 159 ~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~ 238 (454) .. .+..+.+++++|||+++.++.++++|+||+.++...+.+..+++++. ++.++..++++++.+..++++++++ T Consensus 151 ~~----~g~~~~~~~~eVih~r~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~e~~~~ 224 (409) T protein:vir:93 151 AA----TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSNVGKEKRQQ 224 (409) T ss_pred cC----CceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEecCCCCCHHHHHH Confidence 22 24567899999999998888999999999999999999999998884 5566666788888999999999999 Q ss_pred HHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHH Q lcl|Aclame:pro 239 LKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYS 318 (454) Q Consensus 239 ~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~ 318 (454) +++.|++.++ ++|+++|+++|++|++++++++|+||+|.+++++++||++|||||++||+.++++++|+|++.+.|++ T Consensus 225 ~~~~~~~~~~--~~g~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~~f~~ 302 (409) T protein:vir:93 225 VLEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQ 302 (409) T ss_pred HHHHHHHHhh--cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHH Confidence 9999998874 57889999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhcCcc----cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccccc Q lcl|Aclame:pro 319 QCLQTLIESIELLLDEALETGE----NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYL 394 (454) Q Consensus 319 ~~i~P~~~~ie~~l~~~l~~~~----~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~ 394 (454) .||.|+++.|+++||++|+++. +++++||++++++.|.+++++.+++++++|++|+||+|+++|+||+||||.+++ T Consensus 303 ~~l~P~~~~ie~~l~~~Ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~ 382 (409) T protein:vir:93 303 HTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLI 382 (409) T ss_pred HHHHHHHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeee Confidence 9999999999999999999864 467899999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccccccccCCCccCcccCCCCC Q lcl|Aclame:pro 395 QQQNYSLEALSRRDAREDPFASSGKTASVPQA 426 (454) Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (454) ++|+++++..........+..... ++. T Consensus 383 ~~n~~~~~~~~~~~~~~~gG~~n~-----~e~ 409 (409) T protein:vir:93 383 SGDLYPIDTPLELRKSLKGGDKNV-----NES 409 (409) T ss_pred cccccccccchhhcccccCCCCCc-----CCC Confidence 999999876543322211111000 000 No 38 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=100.00 E-value=4.1e-89 Score=505.14 Aligned_cols=401 Identities=18% Similarity=0.231 Sum_probs=326.5 Q ss_pred Ccchhhhhcccc-ccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQ-KSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 1 m~n~f~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) =-|+|+|.++.- ..........+.+...|.+ .....++.+.|+++++|++||++||++||++||++++..+. T Consensus 3 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~a~~~~~V~~ci~~ia~~ia~lp~~~~~~~~~ 75 (409) T protein:vir:96 3 KENIVTRIKKKLIDNWIDQSASKLYDFSPWKN-------KSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV 75 (409) T ss_pred cccchhhhhhHHhhhhhccccccccccccccC-------ccccccchhhHhhhHHHHHHHHHHHHhhhhCceEEeecccc Confidence 123443332220 0000111111111112211 12234677889999999999999999999999999975443 Q ss_pred ccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCcee-eEEe Q lcl|Aclame:pro 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVF-YRIT 158 (454) Q Consensus 80 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~-~~~~ 158 (454) ..++++.+|+.+||++||+.+||+.++.+++++||||++++|+.+|.+++|||++|+.|++..+.++... |.+. T Consensus 76 -----~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~ 150 (409) T protein:vir:96 76 -----VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIH 150 (409) T ss_pred -----cchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEE Confidence 3466677788899999999999999999999999999999999999999999999999999988766544 4443 Q ss_pred ccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHH Q lcl|Aclame:pro 159 PDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKK 238 (454) Q Consensus 159 ~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~ 238 (454) . ..+..+.+++++|||++..++.++++|+||+..+...++...+++++. ++.++..+++++..+..++++++++ T Consensus 151 ~----~~g~~~~~~~~evih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~e~~~~ 224 (409) T protein:vir:96 151 A----ATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSNVSTEKRQQ 224 (409) T ss_pred c----CCceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCceeEEecCCCCCHHHHHH Confidence 2 224567899999999998888999999999999999999999998874 4455555677888889999999999 Q ss_pred HHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHH Q lcl|Aclame:pro 239 LKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYS 318 (454) Q Consensus 239 ~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~ 318 (454) ++++|++.++ |+|+++++++|+++++++++++|+||+|.+++++++||++|||||++||+.++++++|+|++.+.|++ T Consensus 225 ~~~~~~~~~~--n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~s~~e~~~~~f~~ 302 (409) T protein:vir:96 225 VLEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQ 302 (409) T ss_pred HHHHHHHHhh--cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHH Confidence 9999999885 57899999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhcCcc----cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccccc Q lcl|Aclame:pro 319 QCLQTLIESIELLLDEALETGE----NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYL 394 (454) Q Consensus 319 ~~i~P~~~~ie~~l~~~l~~~~----~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~ 394 (454) +||.|+++.|+++||++|+++. +++++||++.+++.|.+++++++++++++|++|+||+|+++|+||+||||.+++ T Consensus 303 ~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~ll~~d~~~~~e~~~~~~~~G~~T~NE~R~~~g~~pi~ggD~~~~ 382 (409) T protein:vir:96 303 HTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLI 382 (409) T ss_pred HHHHHHHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCcceeee Confidence 9999999999999999999764 467999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccccccccCCCccCcccCCCCCCcccCc Q lcl|Aclame:pro 395 QQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDG 432 (454) Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 432 (454) ++|+++++..........+.....+ + + T Consensus 383 ~~n~~~~~~~~~~~~~~~gG~~n~~-----e------~ 409 (409) T protein:vir:96 383 SGDLYPIDTPLELRKSLKGGDKNVN-----E------S 409 (409) T ss_pred cccccccccchhhcccccCCCCCcC-----C------C Confidence 9999998654332211111110000 0 0 No 39 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=100.00 E-value=7.4e-89 Score=503.76 Aligned_cols=399 Identities=17% Similarity=0.226 Sum_probs=328.6 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) ++.++++..-......+. ....+...|. ......++.+.|+++++|++||++||++||++|+++++..+. T Consensus 6 ~~~~~k~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~v~~~~a~~~~~v~~~i~~Ia~~ia~lp~~~~~~~~~- 75 (409) T protein:vir:94 6 IVTRIKKKLIDNWIDQSA--SKLYDFSPWK-------NKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV- 75 (409) T ss_pred cchhhhhHHhhhhhcCCc--cccccccccc-------CccccccchhhhhccHHHHHHHHHHHHhhhhCceeEeecccc- Confidence 455554432111111111 0111111111 122344688889999999999999999999999999975543 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCcee-eEEec Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVF-YRITP 159 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~-~~~~~ 159 (454) ..++..++|+.+||++||+++||+.++.+++++||+|++++|+.+|.+++|||++|+.|++..+.++... |.+.. T Consensus 76 ----~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~ 151 (409) T protein:vir:94 76 ----VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHA 151 (409) T ss_pred ----cchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEc Confidence 2456677777899999999999999999999999999999999999999999999999999988766544 44432 Q ss_pred cccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHH Q lcl|Aclame:pro 160 DRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKL 239 (454) Q Consensus 160 ~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~ 239 (454) . .+..+.++++||||+++.++.++++|+||+..+...++...++.++. ++.++..++++++.+..+++++.+++ T Consensus 152 ~----~g~~~~~~~~dvih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~e~~~~~ 225 (409) T protein:vir:94 152 A----TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSNVGKEKRQQV 225 (409) T ss_pred C----CceEEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCeeEEecCCCCCHHHHHHH Confidence 2 24567899999999998888999999999999999999999998885 55556667888889999999999999 Q ss_pred HHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHH Q lcl|Aclame:pro 240 KSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQ 319 (454) Q Consensus 240 ~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~ 319 (454) ++.|++.++ ++|+++++++|+++++++++++|+||+|.+++++++||++|||||++||+.++++++|+|++.+.|+++ T Consensus 226 ~~~~~~~~~--~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~~f~~~ 303 (409) T protein:vir:94 226 LEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQH 303 (409) T ss_pred HHHHHHHhh--cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHH Confidence 999999885 578899999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhhcCcc----cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccc Q lcl|Aclame:pro 320 CLQTLIESIELLLDEALETGE----NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQ 395 (454) Q Consensus 320 ~i~P~~~~ie~~l~~~l~~~~----~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~ 395 (454) ||.|+++.|+++||++|++.. +++++||++++++.|.+++++.+.+++++|++|+||+|+++|+||+||||.++++ T Consensus 304 ~l~P~~~~ie~~ln~~Ll~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~ 383 (409) T protein:vir:94 304 TLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLIS 383 (409) T ss_pred HHHHHHHHHHHHHHHhhCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeEeec Confidence 999999999999999999764 4679999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccccccCCCccCcccCCCCC Q lcl|Aclame:pro 396 QQNYSLEALSRRDAREDPFASSGKTASVPQA 426 (454) Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (454) +|+++++..........++... .++. T Consensus 384 ~n~~~~~~~~~~~~~~kGG~~n-----~~e~ 409 (409) T protein:vir:94 384 GDLYPIDTPLELRKSLKGGDKN-----VNES 409 (409) T ss_pred ccccccccchhhcccccCCCCC-----cCCC Confidence 9999997653332211111000 0000 No 40 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=100.00 E-value=1.5e-88 Score=502.07 Aligned_cols=447 Identities=14% Similarity=0.181 Sum_probs=337.2 Q ss_pred Ccchhhhhccccc-cccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQK-SGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 1 m~n~f~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) |.+.|+++..+.. ......+... ...+.+ .....-.+..++.+.++++++|++||++||+++|++|+++|+..++ T Consensus 76 i~~pfkkk~~~~~~d~f~~s~es~-s~vtsl---s~pdaf~~vnVs~~~AlknsaV~scI~~IA~sIAsLPlklYrr~ed 151 (945) T protein:vir:10 76 IIVPYNHQEPPFKFNLFEYSPESL-MYLPSI---SDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIED 151 (945) T ss_pred ccccccccccchhhhhhhccCccc-eecccc---cCccceeeehhhhhhhhccHHHHHHHHHHHhhhccCceEEEEeccc Confidence 3333332221100 0000000000 000000 0011112345778899999999999999999999999999988777 Q ss_pred ccc-----eehhhhHHHHhhhhccccCCHHH----HHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCC Q lcl|Aclame:pro 80 GIR-----RETRRGDIARLCRRPNAQQNRIQ----FFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADD 150 (454) Q Consensus 80 ~~~-----~~~~~~~~~~l~~~pn~~~~~~~----f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~ 150 (454) |.. .....|++..|+.+||++||+.+ |+++++.+++++||+|++++|+.+|.+.+|+|++|++|++..+.+ T Consensus 152 G~~~~~~kk~~~~hpL~~LL~rPNp~mT~~eFwqsFl~~Lv~dLLL~GNAYieIiRd~~G~ii~L~pLdPs~Vti~~ddD 231 (945) T protein:vir:10 152 KHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSED 231 (945) T ss_pred CcccccccccccchHHHHHHhCCCcccChhHHHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEcCC Confidence 643 23456777788889999999988 556788999999999999999999999999999999999999998 Q ss_pred CceeeEEeccccccccceeEEehhheEEeecCCCcCcc---cccchhhhhHhHHHHHHHHHHHHHHHHh-ccCCcceeEe Q lcl|Aclame:pro 151 GEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPL---IGLPPVYAAGLAATQGHHIQENSTSFFR-NGGRPSGVIE 226 (454) Q Consensus 151 g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~---~G~s~l~~~~~~i~~~~~~~~~~~~~~~-ng~~p~~~l~ 226 (454) |...++|....+ +.....++++++||+...++.++. +|+||+.++...|....+++++++++|. ||++|+++|. T Consensus 232 G~~~y~Yv~~id--G~~~~~v~a~DvIlhirn~s~DG~~~GyGlSPIeaa~~aI~~alAaek~aar~FskNGa~PsGILs 309 (945) T protein:vir:10 232 TGIVVGYVQEVD--GAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILA 309 (945) T ss_pred CcEEEEEEEecC--CceEEEecCCceEEEeccCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEE Confidence 877766654322 233456888888766555444443 5999999999999999999999999995 7889999998 Q ss_pred cC----------ccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchh Q lcl|Aclame:pro 227 IP----------GSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAY 296 (454) Q Consensus 227 ~~----------~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~ 296 (454) ++ +.+++++.+++++.|++.++|.++|+++++++|+++++++++++|+||++++++++++||++|||||+ T Consensus 310 vkg~~~~d~k~~~~LseEq~erlKe~wee~~sG~NnG~piVLdeGmef~pLs~s~~DaQfLEsrkfs~eeIArAFGVPP~ 389 (945) T protein:vir:10 310 IEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQ 389 (945) T ss_pred ecCccccccccccccCHHHHHHHHHHHHHHhCCcccccceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHH Confidence 65 45689999999999999999988899999999999999999999999999999999999999999999 Q ss_pred hhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHH Q lcl|Aclame:pro 297 KIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGE-NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPN 375 (454) Q Consensus 297 ~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~-~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~N 375 (454) +||..+.++++|+|++...|+++||.|++.+||++||++|++.. +..+.|+++.+...|.+++++.+.+++++|+||+| T Consensus 390 lLG~~e~st~SNiEqq~~~Fv~~tL~Pil~~IEqeLNrkLl~~~eg~~i~fdFd~ldl~D~ksraEal~kli~sGiLTiN 469 (945) T protein:vir:10 390 DVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSIN 469 (945) T ss_pred HcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeEEEecchhccCHHHHHHHHHHHHhCCCcCHH Confidence 99999999999999999999999999999999999999997643 45677888877788999999999999999999999 Q ss_pred HHHHHhcCCCCCCcccccccc-ccccccccccccccccCCCccCcccC--CCCCCcccCcccccccccccHHHHHHHHHh Q lcl|Aclame:pro 376 EARKRENLPPLAGGDALYLQQ-QNYSLEALSRRDAREDPFASSGKTAS--VPQAVAASDGNKAITETEHDAVKAMFRGIL 452 (454) Q Consensus 376 E~R~~~g~~p~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~a~~~~~~ 452 (454) |+|+++|+||+||||.++++. ++.+.+..........+++......+ .+..++.++ +.....+.+++.-+.++++| T Consensus 470 EvRe~lGLpPIeGGD~lli~~nn~~P~d~~~ka~~ga~p~q~aq~~~dqp~~kGGe~dE-ns~~psE~kda~~e~~~~l~ 548 (945) T protein:vir:10 470 EARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDE-NSSVPSEQKNAGLEVLRNLF 548 (945) T ss_pred HHHHHhCCCCCCCcceeeeccccccccccccccccCCCCcccccCCCCCCCCCCCCCCC-CCCCCCcccchHHHHHHHHH Confidence 999999999999999999886 45555544333222222111111111 111111111 11112233344445555566 Q ss_pred cC Q lcl|Aclame:pro 453 KK 454 (454) Q Consensus 453 ~~ 454 (454) ++ T Consensus 549 ~~ 550 (945) T protein:vir:10 549 KS 550 (945) T ss_pred HH Confidence 55 No 41 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=100.00 E-value=6.3e-89 Score=504.11 Aligned_cols=403 Identities=20% Similarity=0.211 Sum_probs=331.4 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCcc-ccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVK-ADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) +|++|+++.. ... .....| ..+..+......... +....+.++|+|++||++||+++|++|+++|+++++ T Consensus 3 ~~~~~~~~~~---~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~d 73 (423) T protein:vir:81 3 FLQKLGLAPS---VVA-TPEPIE-----LVGPIFESLKLSTKNMTVEQIWEDQPHLRTVTTFIARNVASLQLQAFERVED 73 (423) T ss_pred hhHhhccccc---ccc-Cccccc-----cccccccccccccchhhHHHHHHhhhHHHHHHHHHHHhHhhCceEEEEEecC Confidence 4555432221 111 111111 111112222222222 345567789999999999999999999999998888 Q ss_pred ccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC--CceeEEEEecCcceEEEECCC--Cceee Q lcl|Aclame:pro 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR--GQIKELRILDWNRVEPLVADD--GEVFY 155 (454) Q Consensus 80 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~--G~~~~l~~l~~~~~~~~~~~~--g~~~~ 155 (454) |......+|.+..++.+||++||+.+||+.++.+++++||+|+++.|+.. +....|+|+++..+++....+ +...| T Consensus 74 g~~~~~~~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~~~~~~l~p~~~~~v~~~~~~~~~~~~~Y 153 (423) T protein:vir:81 74 GGRERVREGHLARVCKLANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVDTPTLDIRPIPVSWVQRRAYKDGWGSLDY 153 (423) T ss_pred CceeeeccchHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcCcceEEEeecccceeeeeeccCCCcceEE Confidence 88777777777788889999999999999999999999999999998753 467788899999888877655 44556 Q ss_pred EEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCc-----c Q lcl|Aclame:pro 156 RITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPG-----S 230 (454) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~-----~ 230 (454) ++..... ..+..+.+++++|||++.+++.+..+|+||+..+..+|....++++++.++|+||++|+++|.++. . T Consensus 154 ~~~~~~~-~~g~~~~~~~~evih~r~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gvi~~~~~~~~~~ 232 (423) T protein:vir:81 154 IIIESGD-NDGRSVKVPGERVIHRHGYNPKTMKRGKSPVQSLRDILGEQIEAAIFRAQMWRNGPRPGMVIMRDPESKAGK 232 (423) T ss_pred EEEEecC-CCceEEEEcccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcccCcc Confidence 6544332 245667899999999998888888899999999999999999999999999999999999998764 4 Q ss_pred CCHHHHHHHHHHHHHHhcC--cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccC Q lcl|Aclame:pro 231 ITEENAKKLKSNWDSGYTG--ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDN 308 (454) Q Consensus 231 ~s~e~~~~~~~~~~~~~~g--~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n 308 (454) ++++++++++++|++.+.+ +|+|+++||++|++|++++++++|+||+|.+++.+++||++|||||++||..++++++| T Consensus 233 l~~e~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~~~~~t~sn 312 (423) T protein:vir:81 233 WDAESRTRFMANLRASFSPKSSDVGGTLLLEDGMKAENFHTTSKDEQTVETTKLSLQTVAQVYGINPTMVGQLDNANYSN 312 (423) T ss_pred CCHHHHHHHHHHHHHHhccccccCCcceecCCCceEEeccCChhhHHHHHHHHhhHHHHHHHhCCCHHHhcCCCCCCccc Confidence 6899999999999999843 68999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-----ccceeeecchhhhhcCHHHHHHHHHHHHh-CCCcCHHHHHHHhc Q lcl|Aclame:pro 309 VEALEQQYYSQCLQTLIESIELLLDEALETG-----ENESTEFDVTTLLRMDSERRMKTLGDAVK-NTLLTPNEARKREN 382 (454) Q Consensus 309 ~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~-----~~~~~~f~~~~l~~~d~~~~~~~~~~~~~-~g~~T~NE~R~~~g 382 (454) +|++.+.|+++||.|+++.||++||++|+++ .+++++||.+.+++.|.+++++.+.+++. +|+||+||+|+++| T Consensus 313 ~e~~~~~f~~~~L~P~~~~ie~~l~~~L~~~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~l~~~G~~T~NE~R~~~g 392 (423) T protein:vir:81 313 VREFRKALYGDNLGSWIRIIQDVMNLFLLPRVGIDNEKFYFEFNLEEKLRASFEEAAEIKRAAVGNVAWMTINEVRAMDN 392 (423) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCccccccCccEEEecchhhhccCHHHHHHHHHHHHhCCCCcCHHHHHHHhC Confidence 9999999999999999999999999999975 34679999999999999999999999885 69999999999999 Q ss_pred CCCCCCccccccccccccccccccccccccC Q lcl|Aclame:pro 383 LPPLAGGDALYLQQQNYSLEALSRRDAREDP 413 (454) Q Consensus 383 ~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 413 (454) +||+||||++++|.|+.+.+.......+... T Consensus 393 l~p~~gGD~~~~p~n~~~~~~~~~~~~~~~t 423 (423) T protein:vir:81 393 LPSIDGGDDLARPLNTEFGDSEDAPGEEVET 423 (423) T ss_pred CCCCCCcceeecccccccCccCCCCCCCCCC Confidence 9999999999999988765432111100000 No 42 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=100.00 E-value=1.1e-88 Score=502.72 Aligned_cols=411 Identities=17% Similarity=0.228 Sum_probs=329.1 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +-+||+ .... ....|...... +...++.++..+ ...|+++++|++||++||++||++|+++++.+.++. T Consensus 1 m~~~~~-~~~~------~~~~~~~~~~~---~~~~~~~~g~~~-~~~Al~~~~V~~cv~~ia~~iA~lp~~~~~~~~~~~ 69 (417) T protein:vir:38 1 MKLFRG-LATE------VDPHWADHLLD---SGVIPSFRGGYL-GISALRNSDVLTAVSIVSGDVSRFPLVITDSSTDEV 69 (417) T ss_pred Cccccc-cccC------CCccchhhhcc---cccccccCCcee-chhhcccHHHHHHHHHHHHhhccCeeEEEEcCCcce Confidence 344432 2211 11223332211 112222233322 346899999999999999999999999998766654 Q ss_pred ceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC-CceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 82 RRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR-GQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 82 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~-G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) . ..+++..+|+.+||++||+.+||+.++.+++++||+|++++|+.. |.+..|+|++|+.|++..+..+...|+|... T Consensus 70 ~--~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~v~v~~~~~~~~~y~~~~~ 147 (417) T protein:vir:38 70 I--DLANIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDPDNIIYRFTPY 147 (417) T ss_pred e--ccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCceEEEEEcCCCeEEEEEEEc Confidence 3 345566677789999999999999999999999999999999864 6799999999999999998888888877654 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~ 240 (454) . .+....+++++|||+++. +.++++|+||+.++..+|.+..++++++.++|+||++|+++++.++.+++++.++++ T Consensus 148 ~---~~~~~~~~~~dviH~r~~-~~d~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~l~~e~~~~~~ 223 (417) T protein:vir:38 148 N---SSMQKVCGFEDVIHWKFF-SYDTIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIKAKESRLSAEARQKIR 223 (417) T ss_pred C---CcEEEEecCcceEEecCC-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHH Confidence 3 234567899999999965 578899999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQC 320 (454) Q Consensus 241 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~ 320 (454) ++|++.++|.|+|+++||++|++|++++++++|+||+|.+++++++||++|||||++||. .++++|++++...|+++| T Consensus 224 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~--~~~~s~~e~~~~~~~~~t 301 (417) T protein:vir:38 224 EDFERAQAGADAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQ--NSPNQSVKQLADDYIRND 301 (417) T ss_pred HHHHHHhcccccCCceeccCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHhCC--CCcchhHHHHHHHHHHHH Confidence 999999999999999999999999999999999999999999999999999999999984 557899999999999999 Q ss_pred HHHHHHHHHHHHHHhhcCcc---cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCc--cccccc Q lcl|Aclame:pro 321 LQTLIESIELLLDEALETGE---NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGG--DALYLQ 395 (454) Q Consensus 321 i~P~~~~ie~~l~~~l~~~~---~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~--d~~~~~ 395 (454) |.|+++.||++||++|+++. +++++||++.+.+.+ ...+++++++|+||+||+|+++|+||+|+| |.++++ T Consensus 302 l~P~~~~ie~~l~~~Ll~~~~~~~~~~~fd~~~l~~~~----~~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~~d~~~~~ 377 (417) T protein:vir:38 302 LPFYFEPITSEFELKLLDDAQRHQYCIGFDTKSVNGLP----IADVNTAVNGGLWTGNEGRAELGKKPLKDPNMDRIQST 377 (417) T ss_pred HHHHHHHHHHHHHhhhcChhhcccceEEechhhhhHHH----HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeeec Confidence 99999999999999999763 447888888775433 334678899999999999999999999887 678999 Q ss_pred cccccccccccccccccCCCccCcccCCCCCCcccCccccc Q lcl|Aclame:pro 396 QQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAI 436 (454) Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 436 (454) .|+++++.......++......+..... ...+.++.+... T Consensus 378 ~n~~~~d~~~~~~~~~~~~~kgg~~~~~-~~~~~~~~~~~~ 417 (417) T protein:vir:38 378 LNTVFLDQKEAYQAEHAAELKGGDTNAK-GNQNGSGTNANS 417 (417) T ss_pred ccccccccccccccccccccCCCCCCCC-CCCcCCCCcCCC Confidence 9999999776655443333222222111 111111111111 No 43 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=100.00 E-value=6.7e-87 Score=493.00 Aligned_cols=426 Identities=18% Similarity=0.170 Sum_probs=321.6 Q ss_pred cccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccccceehhhhHHHHhhh Q lcl|Aclame:pro 16 RDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCR 95 (454) Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (454) ....+.+. .+.. .++ ......++.+.|+++++|++||++||++||++||++|+.+ ++. ...++.+.+|+. T Consensus 1 ~~~~~~~~----g~~~-~~~--~~~~~~~~~~~~~~~~~V~acV~~Ia~~iA~lpl~l~~~~--~~~-~~~~~l~~lL~~ 70 (723) T protein:vir:94 1 MTTFPSGA----GGWN-AWS--ADSVFGNGAKGWSNSAVAYRCISMLANNAASVDLVVRGPD--GEL-DELHPLSQLWNV 70 (723) T ss_pred CcccccCC----Cccc-ccc--ccccccccHHHHhhhHHHHHHHHHHHHhhccceeEEEcCC--Ccc-chhhHHHHHHhh Confidence 11111111 0000 011 1234446678899999999999999999999999998643 222 334566667777 Q ss_pred hccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC---CCceeEEEEecCcceEEEECCCCceeeEE---ecccccccccee Q lcl|Aclame:pro 96 RPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA---RGQIKELRILDWNRVEPLVADDGEVFYRI---TPDRNCGITEAV 169 (454) Q Consensus 96 ~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~---~G~~~~l~~l~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~ 169 (454) +||++||+.+||+.++.+|+++||+|++++|++ .|.|.+|+|+++..+.+....++...+.. .+......+..+ T Consensus 71 ~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~G~~~ 150 (723) T protein:vir:94 71 MPNRAMPAQVLKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAADAVPQAQIIGYVIERTDGVRV 150 (723) T ss_pred CCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCCccceeeeeeEEEEEecCceeE Confidence 999999999999999999999999999999764 48899999999988888776654322211 111112234567 Q ss_pred EEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 170 TVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTG 249 (454) Q Consensus 170 ~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g 249 (454) .+++++|||++.+++.++++|+||+..+...|....++++++.++|+||++|++||+.+ .+++++.++++++|++.++| T Consensus 151 ~~~~~dIiHir~~~~~dg~~G~Spi~~a~~~i~~~~aa~~~~~~~f~NG~~p~giL~~~-~l~~e~~~~~~~~~~~~~~G 229 (723) T protein:vir:94 151 PVLADEMLWLRFSDPYDPLAVMAPWKAARAAVDADFYAATWQRQSFKNGARPGGVVNLG-DMDEQTFTKTVAAFRSQVEG 229 (723) T ss_pred EecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcC-CCCHHHHHHHHHHHHHHhhc Confidence 89999999999988899999999999999999999999999999999999999999986 58999999999999999987 Q ss_pred -cccCCceecC----------CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHH Q lcl|Aclame:pro 250 -ENAGKTAILS----------NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYS 318 (454) Q Consensus 250 -~n~g~~~vl~----------~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~ 318 (454) .|+|+++||+ .|++|++++++++|+||+|++++++++||++|||||.+||+ .++++|.+++...|+. T Consensus 230 ~~Nagk~~vL~g~~~~~~vl~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~i~~--~st~sN~e~~~~~f~~ 307 (723) T protein:vir:94 230 VQNAGRHLLIAGQGSDGGAAGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIRKDALLG--GSTYENQAEAKAAVWT 307 (723) T ss_pred hhhcCcceeecccccccccccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCChhHcCC--CCCcccHHHHHHHHHH Confidence 7999999985 58999999999999999999999999999999999999975 4578999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhcCcccceeeecc--hhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccc--cc Q lcl|Aclame:pro 319 QCLQTLIESIELLLDEALETGENESTEFDV--TTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDAL--YL 394 (454) Q Consensus 319 ~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~--~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~--~~ 394 (454) +||.|+++.||++||++|++..++.+.|++ ..+++.|.+++++.+.+++++|++|+||+|+++|+||+||||.. +. T Consensus 308 ~tL~P~~~~ie~~ln~~Ll~~~g~~~~~~f~~~~lLr~D~~~r~~~~~~~v~~G~~T~NE~R~~lglpPi~gGd~~~~~~ 387 (723) T protein:vir:94 308 ETLIPQMEVMASITDLQLLPDIGWTVEWDFNSVPALQEDLEAQAGRNQGYLVNDVLMVDEVRATIGLDPLPGGIGQMTLT 387 (723) T ss_pred HHHHHHHHHHHHHHhHhhcccccCceEEeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccceec Confidence 999999999999999999987666555544 56899999999999999999999999999999999999999853 33 Q ss_pred cc--cccccccccccccccc-----------CCCccCcccCCCCCCcccCcccccccccccHHHHHHHHHhcC Q lcl|Aclame:pro 395 QQ--QNYSLEALSRRDARED-----------PFASSGKTASVPQAVAASDGNKAITETEHDAVKAMFRGILKK 454 (454) Q Consensus 395 ~~--~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a~~~~~~~~ 454 (454) |. +..+.+.......... ...+..+......+....|....+.++..+.+++++..++=+ T Consensus 388 p~~~~~a~~~~~~p~~~e~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (723) T protein:vir:94 388 PYRAQFAPAPAPAPAVEEGAARMLALLERVAADRPLPELPVRATTVLHHDPGPDPQQTLYERLEALLQPLLVE 460 (723) T ss_pred cccccccCCCCCCccchhhhHhhhhhccccccccCcCCCCCCCCCCCCCCcccCCchhHHHHHHHHHhhhHHH Confidence 32 3333322111100000 000001111111112223333334444445555555444333 No 44 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=100.00 E-value=1.6e-86 Score=490.96 Aligned_cols=398 Identities=19% Similarity=0.209 Sum_probs=332.9 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) |||+|++..++..... ...+. .....+...+...++...++++++|++||++||+++|++||++|+.++++ T Consensus 3 ~f~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~ 73 (406) T protein:vir:95 3 LFDRWRRTKRKSKIRA---DTGYV------GLFMSGEDVSFLVPGYVRLSDNPEVRMAVHKIADLISSMTIYLMQNTEDG 73 (406) T ss_pred chhhhccccccccccc---cchhh------hhhccCcccCccccCHHHHhhcHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 8888876544322211 11111 11223344556677888999999999999999999999999999988776 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCe--EEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEe Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNT--VVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRIT 158 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~--~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~ 158 (454) .. ...++++++|+.+||++||+++||+.++.+++++|++ |+++.|+.+|.+++||||+|++|++..+.+| |.|. T Consensus 74 ~~-~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~~l~~i~~~~v~~~~~~~~---~~~~ 149 (406) T protein:vir:95 74 DI-RIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLIDELVPLTPSKVNFLDTPDG---YQVL 149 (406) T ss_pred ce-eecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEEEEEEEcCceeEEEEcCCe---EEEE Confidence 54 4567888999999999999999999999999999765 6667899999999999999999999998875 3332 Q ss_pred ccccccccceeEEehhheEEeecC-CCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHH Q lcl|Aclame:pro 159 PDRNCGITEAVTVPAREVIHDRFN-CFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAK 237 (454) Q Consensus 159 ~~~~~~~~~~~~~~~~~vih~~~~-~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~ 237 (454) .. ...|++++|||++++ ++.++++|+||+..+...+....++.+++.++|+||+.|+++++++..+++++.+ T Consensus 150 ~~-------~~~~~~~evih~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~~e~~~ 222 (406) T protein:vir:95 150 YG-------GQTFNYDEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQATATKKSFMSGKYMPSLIVKVDAATAELSSE 222 (406) T ss_pred ec-------cEEEchhHEEEeeccCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHH Confidence 21 246899999999974 6778899999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHhcC-cccCCceecC-CCceeeec-cccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH Q lcl|Aclame:pro 238 KLKSNWDSGYTG-ENAGKTAILS-NGAKYNPT-TFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ 314 (454) Q Consensus 238 ~~~~~~~~~~~g-~n~g~~~vl~-~g~~~~~l-~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~ 314 (454) +++++|++.++| .|+|+++|++ +|.+++++ +++++|+|++|.+++++++||++|||||++||..+ +.+++.. T Consensus 223 ~~~~~~~~~~~g~~n~~~~~v~~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~-----~~~~~~~ 297 (406) T protein:vir:95 223 EGRNAVFKKYLQATEAGQPWIIPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLGIGE-----FNRDEYN 297 (406) T ss_pred HHHHHHHHHhccccccCCceeecCCCccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC-----chHHHHH Confidence 999999999987 6889998886 45667776 47899999999999999999999999999998643 3488889 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccccc Q lcl|Aclame:pro 315 QYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYL 394 (454) Q Consensus 315 ~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~ 394 (454) +|+++||.|++++|+++||++|+++.+++++|+++.+++.|.+++++.+.+++++|++|+||+|+++|+||+||||.+++ T Consensus 298 ~~~~~~l~P~~~~ie~~l~~~l~~~~~~~~~fd~~~l~~~d~~~~~~~~~~l~~~G~~t~NE~R~~~gl~p~~~gd~~~~ 377 (406) T protein:vir:95 298 NFINSTILPIAKGIEQELTRKLLISPDLYFKFNPRSLYAYDLKELAEVGSNMYVRGIMEGNEVRDWLGLSPKEGLSELVI 377 (406) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeee Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccccccccCCCccCcccCCCCCCcccCccccc Q lcl|Aclame:pro 395 QQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAI 436 (454) Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 436 (454) ++|+++++..+.....+.+..... .+++. T Consensus 378 ~~n~~~~~~~~~~~~~k~g~~~~~-------------~~~~~ 406 (406) T protein:vir:95 378 LENYIPLDKIGDQSKLKGGDNSGA-------------DGQTD 406 (406) T ss_pred ccCccchhhcccccccCCCCCCCC-------------CCCCC Confidence 999999977655333221111100 00000 No 45 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=100.00 E-value=5.6e-86 Score=487.98 Aligned_cols=399 Identities=16% Similarity=0.199 Sum_probs=322.4 Q ss_pred cchhhhhccccccccccCccc-chhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAG-WTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) ++||++.... .....+ |..++. ++.. ..++...|+++++|++||++||++||++|+++++.+++ T Consensus 1 m~~f~~~~~~-----~~~~~~~~~~~~~------~~~~---~~~~~~~Al~~~~V~~~i~~Ia~~iA~lp~~~~~~~g~- 65 (406) T protein:vir:97 1 MSFFQPLGTS-----KVSYDDYISSVLA------GDVS---QKYLGVSALKNSDILTATSIIAGDIARFPLVKKDVNGD- 65 (406) T ss_pred CccccccCCC-----CCCcchHHHHHhc------CCCC---cccccchhhccHHHHHHHHHHHHhhhhCeeEEEecCcc- Confidence 8888643221 111222 222211 1111 23444569999999999999999999999988754432 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC-CCceeEEEEecCcceEEEECCCCceeeEEec Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA-RGQIKELRILDWNRVEPLVADDGEVFYRITP 159 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~-~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~ 159 (454) ....++...+|+.+||++||+.+||+.++.+|+++||+|++++|+. .|.+.+|+|++|+.|++..+.++...|+|.. T Consensus 66 --~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~~L~~i~p~~v~v~~~~~~~~~y~~~~ 143 (406) T protein:vir:97 66 --IIHDEDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQALQFQFYRPSETTVEETDNHEIVYTFTD 143 (406) T ss_pred --ccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEEEEEEECCCeeEEEEcCCceEEEEEEe Confidence 2334556666668999999999999999999999999999999985 6899999999999999999988888887654 Q ss_pred cccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHH Q lcl|Aclame:pro 160 DRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKL 239 (454) Q Consensus 160 ~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~ 239 (454) .. .+..+.++++||||+++. +.++++|+||+.++...|....++++++.++|+||+.|++++..+..+++++.+++ T Consensus 144 ~~---~~~~~~~~~~evih~r~~-~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~~i~~~~~~l~~e~~~~~ 219 (406) T protein:vir:97 144 ML---TAKQVKCFAHDVIHWKFF-SHDTILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTMKGAQLSGDARQRA 219 (406) T ss_pred cC---CceEEEEccccEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCCCCHHHHHHH Confidence 32 345678999999999965 57889999999999999999999999999999999999999888888999999999 Q ss_pred HHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHH Q lcl|Aclame:pro 240 KSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQ 319 (454) Q Consensus 240 ~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~ 319 (454) ++.|++.++|.|+|+++||++|++|++++++++|+||+|.+++++++||++|||||.+||. .++++|.+++...|++. T Consensus 220 ~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~--~~~~~~~e~~~~~f~~~ 297 (406) T protein:vir:97 220 RQEFEKMREGSVGGSPLVFDSTMEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGV--NSPNQSVAQLMEDYVTN 297 (406) T ss_pred HHHHHHHhcccccCceeecCCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCC--CCCcchHHHHHHHHHHH Confidence 9999999999999999999999999999999999999999999999999999999999986 34578999999999999 Q ss_pred HHHHHHHHHHHHHHHhhcCcc---cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCC--cccccc Q lcl|Aclame:pro 320 CLQTLIESIELLLDEALETGE---NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAG--GDALYL 394 (454) Q Consensus 320 ~i~P~~~~ie~~l~~~l~~~~---~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--~d~~~~ 394 (454) ||.|+++.||++|+++|+++. .++++||++.+ .+.+++.+.+++++|+||+||+|+++|+||+++ ||.+++ T Consensus 298 ~l~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~~~----~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~~gD~~~~ 373 (406) T protein:vir:97 298 DLPFYFDAITSELGLKTLNDKDRRLYHIEFDTRSV----TGRNVDEIVKLVNNQILTPNQGLVELGKQKSTDPNMDRYQS 373 (406) T ss_pred HHHHHHHHHHHHHhhhhcChhhccceeEEEecCcc----chhhHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeEee Confidence 999999999999999999764 34677776654 455667788899999999999999999999966 999999 Q ss_pred ccccccccccccccccccCCCccCcccCCCCCCcccCcccc Q lcl|Aclame:pro 395 QQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKA 435 (454) Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 435 (454) ++|+++++...+........ .+. .+.+..++++ T Consensus 374 ~~n~~~~~~~~~~~~~~~~~---~~g-----g~~~~~~~~~ 406 (406) T protein:vir:97 374 SLNYVFLDKKEEYQDKVGIK---GKG-----GEVNAEEDKS 406 (406) T ss_pred ccCccchhcccccccccccc---cCC-----CCCCCCCCCC Confidence 99999997654332222111 110 0001111111 No 46 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=100.00 E-value=8.5e-86 Score=486.96 Aligned_cols=378 Identities=18% Similarity=0.189 Sum_probs=312.9 Q ss_pred Ccc-hhhh-----------------------hccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHH Q lcl|Aclame:pro 1 MWN-LLRR-----------------------TRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVF 56 (454) Q Consensus 1 m~n-~f~r-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 56 (454) .|+ ||.- .++.+.+....+...|.....+.+.+-.....++..++.+.++++++|+ T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~t~~~~~~~~~v~ 82 (409) T protein:vir:83 3 FWSNLFGIPSIPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWSGYPESWATPSWGSAQDKLRTLIDVAW 82 (409) T ss_pred hhhhhcccccCCCcccccccccccCCCCceeeccCCCcchhhhhcccccccccccccccccccCccccchhhHhhhHHHH Confidence 111 1110 0111111111112222222222221111123457788999999999999 Q ss_pred HHHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEe-eCCCCceeEE Q lcl|Aclame:pro 57 ACISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKI-RNARGQIKEL 135 (454) Q Consensus 57 ~~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~-r~~~G~~~~l 135 (454) +||++||+++|++|+++|+.+.. .+....+++.+||++||+.+||+.++.+|++ ||+|++++ ++.+|.+++| T Consensus 83 acV~~Ia~~iA~lpl~~~~~~~~------~~~~~~ll~~~PN~~~t~~~f~~~l~~~lll-Gnay~~~i~r~~~G~~~~L 155 (409) T protein:vir:83 83 ACIDLNASVLSSMPIYRMRNGRI------IDSVAWMSNPDPEVYTSWQEFAKQLFWDFQL-GEAFVLPMAHGSDGYPIRF 155 (409) T ss_pred HHHHHHHHhhccCceEEeeCCcc------ccchhhhcccCCCCCCCHHHHHHHHHHHHhh-CCcEEEEEEECCCCcEEEE Confidence 99999999999999999964321 2334456788999999999999999999887 99998864 8889999999 Q ss_pred EEecCcceEEEECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 136 RILDWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFF 215 (454) Q Consensus 136 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~ 215 (454) +||+|+.|++..+.+|...|++... ..+++|||+++.++.++++|+||+..+...|.+..++++++.++| T Consensus 156 ~pl~p~~v~v~~~~~g~~~y~~~~~----------~~~~eiiHir~~~~~~~~~G~spi~~~~~~i~~~~a~~~~~~~~f 225 (409) T protein:vir:83 156 RVVPPWLVNVELKKGARREYRIGGL----------NVTDEILHIRYQGNTADAHGHGPLESAAPRQVVIGLLQKYVQNLA 225 (409) T ss_pred EEECCcceEEEEcCCceEEEEEccc----------cCccceEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 9999999999999888777665421 235899999998888999999999999999999999999999999 Q ss_pred hccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCcee-eeccccchhhHHHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 216 RNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKY-NPTTFSPVDSQTVEQLKMTAEIVCSVFRVP 294 (454) Q Consensus 216 ~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~-~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp 294 (454) +||++|+++|++++.++++++++++++|++.+++ |+|++++|.+|+++ ++++++++|+||+|.+++++++||++|||| T Consensus 226 ~nga~p~gil~~~~~ls~e~~~~~~~~~~~~~~~-nag~~~il~~g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVP 304 (409) T protein:vir:83 226 ETGGVPLYWLGVERRLSETEAVDLMDRWIESRSK-YAGHPALVTGGATLNQAKSMSAQDLSLMELTQFNEARIAILLGVP 304 (409) T ss_pred hcCCCcceEeecCCCCCHHHHHHHHHHHHHhhCC-ccCccceecCCcccccccCCCHHHHHHHHHHHhhHHHHHHHhCCC Confidence 9999999999999999999999999999998865 78999999999987 579999999999999999999999999999 Q ss_pred hhhhccccc---ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 295 AYKIGVGQP---PSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTL 371 (454) Q Consensus 295 ~~~lg~~~~---~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~ 371 (454) |++||+.++ .+|+|+|++...|+++||.|++++||++||++|++. +.+++|+++.+++.|.+++++.+++++++|+ T Consensus 305 p~llg~~~~~~~~tysn~eq~~~~f~~~tL~P~~~~ie~~l~~~Ll~~-~~~~~f~~~~llr~d~~~r~~~~~~~~~~G~ 383 (409) T protein:vir:83 305 PFLVGLPGATGSLTYSNIEQLFSFHDRSSLRPKATAVMAALDRWALPS-PQHLELNRDDYTRPSLVERATAYKIMIEAGV 383 (409) T ss_pred HHHccCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CcEEEeehhhhhccCHHHHHHHHHHHHhCCC Confidence 999997543 468999999999999999999999999999999975 5579999999999999999999999999999 Q ss_pred cCHHHHHHHhcCCCCCCccccccccccc Q lcl|Aclame:pro 372 LTPNEARKRENLPPLAGGDALYLQQQNY 399 (454) Q Consensus 372 ~T~NE~R~~~g~~p~~~~d~~~~~~~~~ 399 (454) ||+||+|+++||||++|||.+- .+-+ T Consensus 384 lT~NE~R~~~glpp~~ggd~l~--~~gv 409 (409) T protein:vir:83 384 MEPNEARAMERLHSEAAAVRLS--GGGV 409 (409) T ss_pred cCHHHHHHHhCCCCCCCCcccC--CCCC Confidence 9999999999999999998873 2111 No 47 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=100.00 E-value=3.6e-85 Score=483.54 Aligned_cols=394 Identities=18% Similarity=0.201 Sum_probs=320.5 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccH-HHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADP-EAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) |||||+|+.++.... +..+.. .....+...++. ..+..+|+|++||++||++||++|+++|+..++ T Consensus 3 ~~~~f~~k~~~~~~~----~~~~~~---------~~~~~~~~~~~~~~~~~~~~~V~~~I~~ia~~iA~~p~~~~~~~~~ 69 (403) T protein:vir:80 3 LFNFFRRKTRSEPTN----AISWFL---------TQEAYDTLAIPGYTRLSDNPEVRMAVHKIAELISSMTIHLMQNTDN 69 (403) T ss_pred ccccccccccccccc----hhhhhc---------ccccccccccchhhhhhhhHHHHHHHHHHHHhhhhCceEEEEecCC Confidence 999998765432211 111110 011111111222 235578999999999999999999999988777 Q ss_pred ccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHh--CCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEE Q lcl|Aclame:pro 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRH--GNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRI 157 (454) Q Consensus 80 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~--G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~ 157 (454) |.. ...++...+|+.+||++||+.+||+.++.++++. ||||+++.++..|.+.+||||+|+.|++..+.+|..++ | T Consensus 70 g~~-~~~~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~~g~~~~L~~l~p~~v~~~~~~~g~~~~-y 147 (403) T protein:vir:80 70 GDI-RIKNELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTTSGLIDELIPLAPSKVSFVDTDTGYQIW-Y 147 (403) T ss_pred cee-ecCChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcCCCcEEEEEEEcCCeeEEEEcCCceEEE-E Confidence 654 4466777778889999999999999999999984 78999999999999999999999999999988774432 2 Q ss_pred eccccccccceeEEehhheEEeec-CCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHH Q lcl|Aclame:pro 158 TPDRNCGITEAVTVPAREVIHDRF-NCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENA 236 (454) Q Consensus 158 ~~~~~~~~~~~~~~~~~~vih~~~-~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~ 236 (454) . ...+++++|||++. +++.++++|+||+..+...+....++++++.++|+||++|+++|.++...++++. T Consensus 148 ~---------~~~~~~~eiih~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~~~~ 218 (403) T protein:vir:80 148 Q---------GKAYNYDEVLHFIVNPDPEKPYMGRGYRVVLKDIVNNLKQATTTKKSFMSGKYMPSLIVKVDAATAELSS 218 (403) T ss_pred e---------ecccchhhEEEEeccCCCcCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCChHHH Confidence 1 13578899999996 4677888999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHhcC-cccCCceecCCC-ceeeecc-ccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHH Q lcl|Aclame:pro 237 KKLKSNWDSGYTG-ENAGKTAILSNG-AKYNPTT-FSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALE 313 (454) Q Consensus 237 ~~~~~~~~~~~~g-~n~g~~~vl~~g-~~~~~l~-~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~ 313 (454) ++.+++|.+.+.+ .|+|++++++++ .++.++. ++++|+|++|.+++++.+||++|||||++||..+. .++.. T Consensus 219 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-----~~~~~ 293 (403) T protein:vir:80 219 EEGRNAVFKKYLEASEAGQPWIIPAELLDVEQVKPLSLKDLAIHETVELDKRTVAGIFGVPAFLLGVGKY-----DKDEY 293 (403) T ss_pred HHHHHHHHHHHhhhhhcCCeeeecccccccceeccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCc-----cHHHH Confidence 9999999888865 689999988755 4455543 57899999999999999999999999999986432 24556 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccc Q lcl|Aclame:pro 314 QQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALY 393 (454) Q Consensus 314 ~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~ 393 (454) .+|+++||.|+++.||++||++|+++.+++++|+.+.+++.|.+++++.+.+++++|+||+||+|+++|+||+||||.++ T Consensus 294 ~~f~~~~l~P~~~~ie~~l~~kll~~~~~~~~f~~~~ll~~d~~~~~~~~~~~~~~Gi~t~NE~R~~~gl~p~~ggd~~~ 373 (403) T protein:vir:80 294 NNFINSTILPIAKGIEQELTRKLLISPDLYFKFNPRSLYAYDLKELAEVGSNMYVRGLMEGNEVRDWLGLSPKEGLSELV 373 (403) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEe Confidence 78999999999999999999999999889999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccccccccCCCccCcccCCCCCC Q lcl|Aclame:pro 394 LQQQNYSLEALSRRDAREDPFASSGKTASVPQAV 427 (454) Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (454) +++|+++++..+..+....+.... ...+++ T Consensus 374 ~~~n~~pl~~~~~~~~~k~ge~~~----~~~~~~ 403 (403) T protein:vir:80 374 ILENYIPLDKIGDQNKLKGGEKGG----ADGQTD 403 (403) T ss_pred ecccccchhhccchhhccCCCCCC----CCCCCC Confidence 999999998655543322111111 001111 No 48 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=100.00 E-value=4.8e-85 Score=482.87 Aligned_cols=394 Identities=17% Similarity=0.207 Sum_probs=321.2 Q ss_pred Ccchhhhhcccccc-cc-ccCcccchhhhhhhhhhccccccCCcccc-HHHHHhhHHHHHHHHHHHHhhcccceEEEecc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKS-GR-DVREAGWTSLFQAVAEPFAGAWQQGVKAD-PEAVLSFHAVFACISLISQDIAKMRLRLMQTD 77 (454) Q Consensus 1 m~n~f~r~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~ 77 (454) -+|||+++...... .. .......... ......+ .....+ ...++++++|++||++||+++|++||++++.. T Consensus 12 ~m~~F~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~v~~cI~~ia~~ia~~~~~~~~~~ 85 (413) T protein:vir:96 12 NLKFFNNKRSPTEESKAKDEIPKAPQVV-MTLPNFF-----KELISDGYTKLSDSPEVRMAVDCIADLVSNMTIQLMQNG 85 (413) T ss_pred cCCccccCCCcchhhhhhcccccccccc-ccchhhH-----hhhccchhHHHhhchHHHHHHHHHHHhhccCceEEEEec Confidence 45788776443211 11 1111110000 0000000 001111 12478899999999999999999999999987 Q ss_pred ccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCC-ceeEEEEecCcceEEEECCCCceeeE Q lcl|Aclame:pro 78 AQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARG-QIKELRILDWNRVEPLVADDGEVFYR 156 (454) Q Consensus 78 ~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G-~~~~l~~l~~~~~~~~~~~~g~~~~~ 156 (454) ++++.. ..++.+.+|+.+||++||+.+||+.++.+++++||||++++|+.+| .+.+|||++|.+|++..+. +...|. T Consensus 86 ~~~~~~-~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~g~~~~~L~~l~~~~v~~~~~~-~~~~y~ 163 (413) T protein:vir:96 86 ETGDKR-IKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVSGDKIIGLTPISPYKVTFNVSD-DDLDYS 163 (413) T ss_pred CCCccc-cccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCceEEEEEecCceeEEEEcC-CeEEEE Confidence 766543 4567778888999999999999999999999999999999999887 5789999999999998875 455565 Q ss_pred EeccccccccceeEEehhheEEeecC-CCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHH Q lcl|Aclame:pro 157 ITPDRNCGITEAVTVPAREVIHDRFN-CFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEEN 235 (454) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~vih~~~~-~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~ 235 (454) +.... ..++++||||+++. ++.++++|+||+.++...|....++++++.++|+||++|+++|+++..+++++ T Consensus 164 ~~~~~-------~~~~~~evih~k~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~ 236 (413) T protein:vir:96 164 ITFDN-------KEYDPSTLLHFVLNPSIERPFIGTGYKVALKDIVGNLKQASVTKKGFMASEYMPNLIVSVDSDSDELS 236 (413) T ss_pred EeecC-------cEEchhhEEEEeccCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHH Confidence 54322 35789999999975 55678899999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhcC-cccCCceecCCCc-eeeec-cccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHH Q lcl|Aclame:pro 236 AKKLKSNWDSGYTG-ENAGKTAILSNGA-KYNPT-TFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEAL 312 (454) Q Consensus 236 ~~~~~~~~~~~~~g-~n~g~~~vl~~g~-~~~~l-~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~ 312 (454) .++++++|++.++| .|+|+++++++|. ++.++ +++++|+||+|.+++++++||++|||||.+||..+ +.+++ T Consensus 237 ~~~~~~~~~~~~~g~~n~g~~~vl~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~-----~~~~~ 311 (413) T protein:vir:96 237 DEEGRENFEEMYLKRKEAGKPWIIPEGMVNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLLGVGT-----YNKDE 311 (413) T ss_pred HHHHHHHHHHHhcCccccCceeeecCCcccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCc-----chHHH Confidence 99999999999987 6899999997654 55555 46899999999999999999999999999998643 23788 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccc Q lcl|Aclame:pro 313 EQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDAL 392 (454) Q Consensus 313 ~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~ 392 (454) ..+|+++||.|+++.|+++||++|+++ +.+++||++.+++.|.+++++++.+++++|++|+||+|+++|+||+||||.+ T Consensus 312 ~~~~~~~~l~P~~~~ie~~ln~~ll~~-~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~~gd~~ 390 (413) T protein:vir:96 312 FNNFINTKIMSIAQVIQQTYNKLIVEE-DMYFSLNPRSLYNYSLTEMVSAGAQMTQLNALRRNEFRNWVGMPPDAEMDDL 390 (413) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC-CcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCccee Confidence 899999999999999999999999865 6789999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccccccccccCCC Q lcl|Aclame:pro 393 YLQQQNYSLEALSRRDAREDPFA 415 (454) Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~ 415 (454) +++.|+++++..+.....+.+.. T Consensus 391 ~~~~n~~~~~~~~~~~~~~~~dt 413 (413) T protein:vir:96 391 LVLENYLQQKDLVNQKKLIQDET 413 (413) T ss_pred eecccccchhhcccccCCCCCCC Confidence 99999999986654332211111 No 49 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=100.00 E-value=1.3e-84 Score=480.47 Aligned_cols=396 Identities=17% Similarity=0.225 Sum_probs=321.9 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +.||++.++. .+........|..++. .+.++..|+.+.++++++|++||++||++||++|+++ T Consensus 1 M~~f~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~al~~~~V~~~v~~ia~~ia~~p~~~-------- 63 (397) T protein:vir:38 1 MPLLKLNKSH-SQGFSLNDPDWVNFLT--------GGEAQKYVSADTALKNSDIFSLIMQLSGDLAMVRYTS-------- 63 (397) T ss_pred Ccchhhhhcc-cCcccCCchhhhhhhc--------CCcCCceechHHhhccHHHHHHHHHHHHHHhhCcccc-------- Confidence 6667654332 3333433333433322 2345777999999999999999999999999999965 Q ss_pred ceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCc-eeeEEecc Q lcl|Aclame:pro 82 RRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE-VFYRITPD 160 (454) Q Consensus 82 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~-~~~~~~~~ 160 (454) .++.+..|+.+||++||+.+||+.++.+|+++||||++++|+.+|.+++|+|++|++|++..+.+|. ..|++... T Consensus 64 ----~~~~~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~~~~~y~~~~~ 139 (397) T protein:vir:38 64 ----ESDRSQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVDLSWEYLRPSQVQPMLLQDGSGLIYNINFD 139 (397) T ss_pred ----cccHHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEec Confidence 3567889999999999999999999999999999999999999999999999999999999987764 44554433 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~ 240 (454) ....+..+.+++++|||++++++.+.++|+||+.++...|....++.+++.++|+||++|+++++++..+++++.++++ T Consensus 140 -~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~e~~~~~~ 218 (397) T protein:vir:38 140 -EPAIGYMENVPAADVIHIRLLSKNGGKTGISPLSALINEQQIKDASNELTLKALKQSVTASAVLTIQKGGLLDAETRIA 218 (397) T ss_pred -cccccceeEecCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHH Confidence 3334556789999999999998888899999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQC 320 (454) Q Consensus 241 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~ 320 (454) +.|+..+++.|+|+++|+++|++|+++++++.|+||++.+++.+++||++|||||.+||+.+++ ++|.+++ ..|+.+| T Consensus 219 ~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~~-~~~~e~~-~~~~~~~ 296 (397) T protein:vir:38 219 RSKEISKQIHNSDGPVVIDALEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQGDQ-QSSITQI-SGQYAKS 296 (397) T ss_pred HHHHHHhcccccCCceecCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCc-ccHHHHH-HHHHHHH Confidence 9999999889999999999999999999999999999999999999999999999999987664 4677755 5677899 Q ss_pred HHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccccccccccc Q lcl|Aclame:pro 321 LQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYS 400 (454) Q Consensus 321 i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~ 400 (454) |.|+++.|+++||++|++..+ |+++.+++.|.+++++.+++++++|++|+||+|+++|++|++++|.......... T Consensus 297 l~P~~~~ie~~ln~~l~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~~~~~~~~~ 372 (397) T protein:vir:38 297 LNRYVQAIVGELNDKLHANIS----ANIRFAIDAMGDQYASTISSSVKGGTIAGNQARFILQNSGYLAKDLPDPEKEPQQ 372 (397) T ss_pred HHHHHHHHHHHHHHhccChhc----ccccccccCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCccccccccccc Confidence 999999999999999998644 5555667889999999999999999999999999999999999886544333322 Q ss_pred ccccccccccccCCCccCcccCCCCCCcccCccccccccc Q lcl|Aclame:pro 401 LEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETE 440 (454) Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 440 (454) ...........+ ...+.++...| .+ T Consensus 373 ~~~~~~~~~g~~--------~~~~~~e~~~~-------~~ 397 (397) T protein:vir:38 373 AIQLIQQEGGEN--------DGNNSDERGSD-------PE 397 (397) T ss_pred cccccccccCCC--------CCCCCCCCCCC-------CC Confidence 221111100000 00001111111 11 No 50 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=100.00 E-value=2.6e-84 Score=478.81 Aligned_cols=420 Identities=16% Similarity=0.108 Sum_probs=328.2 Q ss_pred Ccchhhhhcccccccccc-----------Ccccchhhh--hhhhhhccc-----cccCCccccHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDV-----------REAGWTSLF--QAVAEPFAG-----AWQQGVKADPEAVLSFHAVFACISLI 62 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~i~~i 62 (454) |+++|++..+...+.... ...++...+ +.+...+.+ ...++..|+.+.|+++++|++||++| T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~a~~~~~v~~~i~~I 82 (466) T protein:vir:81 3 LIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPSTELAPDTFVGLATQAYQANGPVFACMLVR 82 (466) T ss_pred hhHHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhccccccccCccccccchhhhhccHHHHHHHHHH Confidence 677665544332111100 000111101 111111111 11357779999999999999999999 Q ss_pred HHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC--------CceeE Q lcl|Aclame:pro 63 SQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR--------GQIKE 134 (454) Q Consensus 63 a~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~--------G~~~~ 134 (454) |++||++||++++..+ +......+|+++.|+.+||++||+++||+.++.+++++||||++++|+.. |.+++ T Consensus 83 a~~ia~lp~~~~~~~~-~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~g~l~~~~~g~~~~ 161 (466) T protein:vir:81 83 QLVFSSVRFRWQRLRD-GKPSDTFGSRDLQILETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEFVRMRPDWVDVVVE 161 (466) T ss_pred HHhhccCceEEEEecC-CceeeccccHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCccccccccCcceeE Confidence 9999999999998765 44455677888889999999999999999999999999999999999765 45899 Q ss_pred EEEecCcceEEEECCCCce--eeEEeccccccccceeEEehhheEEeecC-CCcCcccccchhhhhHhHHHHHHHHHHHH Q lcl|Aclame:pro 135 LRILDWNRVEPLVADDGEV--FYRITPDRNCGITEAVTVPAREVIHDRFN-CFFHPLIGLPPVYAAGLAATQGHHIQENS 211 (454) Q Consensus 135 l~~l~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~vih~~~~-~~~~~~~G~s~l~~~~~~i~~~~~~~~~~ 211 (454) |+|++|+.|++..+.++.. .|.|+........+...++++|||||+.. ++.++++|+||+..+..+|.+..++++++ T Consensus 162 l~~l~~~~v~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~dviHir~~~~~~d~~~G~s~i~~~~~~i~~~~a~~~~~ 241 (466) T protein:vir:81 162 ERMVRGGRGELGGGQLGWRKVGYLYTEGGRQSGNESVGFLAEDVVHFAPIPDPLASYRGMSWLTPILREIRADQAMSKHQ 241 (466) T ss_pred EEEecCcceEEEEcCCCceEEEEEEEecCcccccceeeeccccEEEEcCCCCcccccccccHHHHHHHHHHHHHHHHHHH Confidence 9999999999999887754 44454444444556778999999999965 57899999999999999999999999999 Q ss_pred HHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 212 TSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSV 290 (454) Q Consensus 212 ~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~ 290 (454) .++|+||+.|+++|+.+..+++++.+++++.|++.++| +|+|+++||++|++|++++++++|+||+|++++++++||++ T Consensus 242 ~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~ 321 (466) T protein:vir:81 242 AKFFDNGATVNLVIKHNPMADPAAVKKWADEVNSKHAGVDNAWKNLNLYPGADADVVGSNLQEIDFKNVRGGGETRIAAA 321 (466) T ss_pred HHHHhcCCCcceEEecCCCCCHHHHHHHHHHHHHHhcCccccccceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999987 68999999999999999999999999999999999999999 Q ss_pred hccchhhhcccc---cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc---cceeeecchhhhhcCHHHHHHH-- Q lcl|Aclame:pro 291 FRVPAYKIGVGQ---PPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGE---NESTEFDVTTLLRMDSERRMKT-- 362 (454) Q Consensus 291 fgvp~~~lg~~~---~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~---~~~~~f~~~~l~~~d~~~~~~~-- 362 (454) |||||++||+.+ +++++|+|++.+.|+++||.|++++||++||++|++.. ..+++|+.+.+++.|.++++++ T Consensus 322 fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~~~~~~~~~f~~~~llr~d~~~r~~~~~ 401 (466) T protein:vir:81 322 AGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNLSGCIGHVMPDMGPDVRLWYDADDVPFLREDEKDAADIQK 401 (466) T ss_pred hCCCHHHcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCcceEEEecchhhhccCHHHHHHHHH Confidence 999999999764 46889999999999999999999999999999998753 3567899999999999988765 Q ss_pred -----HHHHHhCCCcCHHHHHHHhcCCCCCCccccccc-cccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 363 -----LGDAVKNTLLTPNEARKRENLPPLAGGDALYLQ-QQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 363 -----~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) +..++++|+ |+||+|+. +++||..+++ .++.+++............+.... ... +++++ T Consensus 402 ~~~~~~~~~~~~g~-t~nE~r~~-----~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~Gg-~~ngn 466 (466) T protein:vir:81 402 VRAETINTLITAGY-EPESVVAA-----VNSGDLRLLKHTGLTSVQLLPPGVSASASSDTPTS-----GGA-DDNGN 466 (466) T ss_pred HHHHHHHHHHHcCC-Chhhcccc-----ccCCccccccCCCcchhhhcccccccccCCCCccc-----CCC-CcCCC Confidence 667888995 99999953 5667765543 444444433222221111111100 000 11122 No 51 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=100.00 E-value=2.7e-83 Score=473.30 Aligned_cols=447 Identities=14% Similarity=0.124 Sum_probs=328.8 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhcccccc---CCccccHHHHHhhHHHHHHHHHHHHhhccc-------- Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQ---QGVKADPEAVLSFHAVFACISLISQDIAKM-------- 69 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~i~~ia~~va~~-------- 69 (454) |.+-+.+....+..+.....-+ ...++... ...+.. ...+...+.+.++|+|++||+.||++||++ T Consensus 39 ~~~~~~k~~~~~~~a~~~~~~~-~~~~~~~~--~~r~~~~~~~~l~~~~~~~~~npiv~~~I~~ia~~IA~~~~~~~~~~ 115 (551) T protein:vir:80 39 EQEQISKAMNNKEVAYSQPVIG-SMSANPGF--KTKPSIRNNQDLHGVLKKFGGNIILNAIINTRSNQVSMYCKPARHSE 115 (551) T ss_pred cHHHHHHhhccCcceeeccccc-ceecCccc--ccCccccChhHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhc Confidence 3333333222222221111100 00011000 000000 011122345677899999999999999984 Q ss_pred ---ceEEEecccccc---ceehhhhHHHHhhhhcccc-----CCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEe Q lcl|Aclame:pro 70 ---RLRLMQTDAQGI---RRETRRGDIARLCRRPNAQ-----QNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRIL 138 (454) Q Consensus 70 ---~~~~~~~~~~~~---~~~~~~~~~~~l~~~pn~~-----~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l 138 (454) +|.+.....+.+ ......+.+..++.+||++ +|+.+|+++++.+++++||+|++++|+.+|++++|||| T Consensus 116 ~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p~~~s~~~f~~~lv~dlll~Gnay~~i~rd~~G~~~~L~~l 195 (551) T protein:vir:80 116 KGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAK 195 (551) T ss_pred CCCCceEEecccCcccChhHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHhcCCEEEEEEECCCCcEEEEEEe Confidence 455433222211 1112234567788999987 48889999999999999999999999999999999999 Q ss_pred cCcceEEEECCCCce----eeEEeccccccccceeEEehhheEEeecCCCc---CcccccchhhhhHhHHHHHHHHHHHH Q lcl|Aclame:pro 139 DWNRVEPLVADDGEV----FYRITPDRNCGITEAVTVPAREVIHDRFNCFF---HPLIGLPPVYAAGLAATQGHHIQENS 211 (454) Q Consensus 139 ~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~---~~~~G~s~l~~~~~~i~~~~~~~~~~ 211 (454) +|.+|++..+.+|.. .++++. ...+..+.|++++|||+++++.. ++.||+||+.++...|....++++++ T Consensus 196 ~p~~V~v~~~~~g~~~~~~~~y~~~---~~g~~~~~~~~~eiiH~~~n~~~~~~~~~~G~spi~~a~~~i~~~~a~~~~~ 272 (551) T protein:vir:80 196 DPTTIFFATTADGKIPDNGNRFVQV---IDQKIVATFNAREMAFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEAFN 272 (551) T ss_pred CCceeEEEECCccccccCceEEEEE---eCCcEEEEEcccceEEecccCCCCcccccccccHHHHHHHHHHHHHHHHHHH Confidence 999999999887743 122221 12234567999999999976543 46789999999999999999999999 Q ss_pred HHHHhccCCcceeEecCcc--CCHHHHHHHHHHHHHHhcC-cccCCceec-CCCceeeeccccchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 212 TSFFRNGGRPSGVIEIPGS--ITEENAKKLKSNWDSGYTG-ENAGKTAIL-SNGAKYNPTTFSPVDSQTVEQLKMTAEIV 287 (454) Q Consensus 212 ~~~~~ng~~p~~~l~~~~~--~s~e~~~~~~~~~~~~~~g-~n~g~~~vl-~~g~~~~~l~~~~~d~~~~e~~~~~~~~I 287 (454) .++|+||++|+++|.++.+ +++++++++++.|++.++| .|+|++++| ++|++|++++++++|+||+|++++.+++| T Consensus 273 ~~~f~Ng~~p~giL~~~~~~~lt~e~~~~lk~~~~~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~~I 352 (551) T protein:vir:80 273 DRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVSAEDVKFVNMTPSARDMEFEKWLNYLINVI 352 (551) T ss_pred HHHHHcCCCcceEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCccccccCCCceEEEccCChhHHHHHHHHHHHHHHH Confidence 9999999999999988644 7999999999999999988 689998766 68999999999999999999999999999 Q ss_pred HHHhccchhhhccccc----------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHH Q lcl|Aclame:pro 288 CSVFRVPAYKIGVGQP----------PSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSE 357 (454) Q Consensus 288 a~~fgvp~~~lg~~~~----------~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~ 357 (454) |++|||||.+||+.+. .|++|++++...|+++||.|++.+||++||++|++..+..+.|+++.+...+.. T Consensus 353 a~aFgVPp~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~~~~~f~f~~~~~~~~~ 432 (551) T protein:vir:80 353 SALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEFGDKYTFQFVGGDIKSEL 432 (551) T ss_pred HHHhcCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCceEEEeeccChhhHH Confidence 9999999999997544 378999999999999999999999999999999987777788899988888877 Q ss_pred HHHHHHHHHHhCCCcCHHHHHHHhcCCC-CCCccccccccccccccccccccccccC------------------CCccC Q lcl|Aclame:pro 358 RRMKTLGDAVKNTLLTPNEARKRENLPP-LAGGDALYLQQQNYSLEALSRRDAREDP------------------FASSG 418 (454) Q Consensus 358 ~~~~~~~~~~~~g~~T~NE~R~~~g~~p-~~~~d~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~ 418 (454) ++++++ +++.+|+||+||+|+++|+|| +||||.++.+.++.+++........+.. +.... T Consensus 433 ~~~~~~-~~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (551) T protein:vir:80 433 ESVKIL-AEKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVED 511 (551) T ss_pred HHHHHH-HHHhcCCcCHHHHHHHhCCCCCCCCCceeecccccccccccccccCcchhhhhhccccccCcCCCCCCCCCCC Confidence 777765 467789999999999999998 7999999988888777554332221110 00000 Q ss_pred cccCCCCCCcccCcccccccccccHHHHHHHHHhcC Q lcl|Aclame:pro 419 KTASVPQAVAASDGNKAITETEHDAVKAMFRGILKK 454 (454) Q Consensus 419 ~~~~~~~~~~~~d~~~~~~~~~~~~~~a~~~~~~~~ 454 (454) +....+...+.++..+..+++..++.|...++.++. T Consensus 512 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (551) T protein:vir:80 512 IPDGKDTTGDIGKDGQRKDKDNANAGKQGMKGDKPN 547 (551) T ss_pred CCCccccCCCccccccccCccccchhhhhcCCCCcc Confidence 001111111222233334455568899999998888 No 52 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=100.00 E-value=1.9e-81 Score=463.14 Aligned_cols=447 Identities=15% Similarity=0.123 Sum_probs=324.3 Q ss_pred cchhhhhcc-----------------------------------ccccccccCcccchhhhhhhhhhccccccC---Ccc Q lcl|Aclame:pro 2 WNLLRRTRK-----------------------------------NQKSGRDVREAGWTSLFQAVAEPFAGAWQQ---GVK 43 (454) Q Consensus 2 ~n~f~r~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 43 (454) +++|.|..+ ....+..... -....++... ...+... ..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~-~~~~~~~~g~--~~~~~~~~~~~l~ 77 (547) T protein:vir:63 1 MGLFESIRLAGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPV-IGSMSANPGF--KTKPSIRNNQDLH 77 (547) T ss_pred CchhhhhhhhcCCccccccccccccccchhhhhhhHHHHHHhhcccchhhhchh-hheeeccccc--ccCCccCChhHHH Confidence 233322111 1111100000 0000010000 0000000 011 Q ss_pred ccHHHHHhhHHHHHHHHHHHHhhccc-----------ceEEEecccc---ccceehhhhHHHHhhhhccccC-----CHH Q lcl|Aclame:pro 44 ADPEAVLSFHAVFACISLISQDIAKM-----------RLRLMQTDAQ---GIRRETRRGDIARLCRRPNAQQ-----NRI 104 (454) Q Consensus 44 ~~~~~~~~~~~v~~~i~~ia~~va~~-----------~~~~~~~~~~---~~~~~~~~~~~~~l~~~pn~~~-----~~~ 104 (454) ...+.+..+|+|++||+.||+.||++ +|.+.....+ ........+.+..++.+||+++ |+. T Consensus 78 ~l~~~~~~npiv~~~I~~~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s~~ 157 (547) T protein:vir:63 78 GVLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFS 157 (547) T ss_pred HHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccchHH Confidence 12345667899999999999999964 2333222211 1122223355667888999874 889 Q ss_pred HHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCcee---eEEeccccccccceeEEehhheEEeec Q lcl|Aclame:pro 105 QFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVF---YRITPDRNCGITEAVTVPAREVIHDRF 181 (454) Q Consensus 105 ~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~vih~~~ 181 (454) +|++.++.+++++||+|++++|+.+|++++||||+|.+|++..+.+|... ++|+.. ...+....|++++|||+++ T Consensus 158 ~f~~~lv~d~ll~Gn~~~~i~rd~~G~~~~L~~l~p~~V~~~~~~~g~~~~~~~~y~~~--~~~~~~~~~~~~eiih~r~ 235 (547) T protein:vir:63 158 SFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQV--IDQKIVATFNAREMAFAVR 235 (547) T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCcEEEEEEecCceeEEEECCccccccCceEEEEE--cCCcEEEEeccccEEEecc Confidence 99999999999999999999999999999999999999999988877431 122211 1223456799999999997 Q ss_pred CCCcC---cccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCcc--CCHHHHHHHHHHHHHHhcC-cccCCc Q lcl|Aclame:pro 182 NCFFH---PLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGS--ITEENAKKLKSNWDSGYTG-ENAGKT 255 (454) Q Consensus 182 ~~~~~---~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~--~s~e~~~~~~~~~~~~~~g-~n~g~~ 255 (454) ++..+ +.||+||+..+...|....++++++.++|+||++|+++|.++.+ +++++++++++.|++.++| .|+|++ T Consensus 236 n~~~~~~~~~~G~Spi~~~~~~i~~~~~a~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~G~~nagk~ 315 (547) T protein:vir:63 236 NPRSDIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQI 315 (547) T ss_pred cCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhcCccccccc Confidence 65443 66899999999999999999999999999999999999988654 7999999999999999988 689998 Q ss_pred eec-CCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccc----------ccccCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 256 AIL-SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP----------PSSDNVEALEQQYYSQCLQTL 324 (454) Q Consensus 256 ~vl-~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~----------~~~~n~e~~~~~~~~~~i~P~ 324 (454) +++ ++|++|++++++++|+||+|++++++++||++|||||++||+.+. .|++|++++...|+++||.|+ T Consensus 316 ~vl~~~g~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~ 395 (547) T protein:vir:63 316 PVVSAEDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPL 395 (547) T ss_pred ccccCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHH Confidence 766 689999999999999999999999999999999999999997543 378999999999999999999 Q ss_pred HHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCC-CCCccccccccccccccc Q lcl|Aclame:pro 325 IESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPP-LAGGDALYLQQQNYSLEA 403 (454) Q Consensus 325 ~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p-~~~~d~~~~~~~~~~~~~ 403 (454) +++||++||++|++..+..+.|+++.+...+..+++++. +++.+|+||+||+|+++|++| +||||.++.+.+..+++. T Consensus 396 ~~~ie~~ln~~L~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~ 474 (547) T protein:vir:63 396 LGFIEDFINKHIVAEFGDKYTFQFVGGDIKSELESVKIL-AEKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQ 474 (547) T ss_pred HHHHHHHHHhhcccccCCceEEEeeccccccHHHHHHHH-HHHhCCCcCHHHHHHHhCCCCCCCCCceeecccccccccc Confidence 999999999999987666778888888888877777654 577889999999999999998 799999998887777654 Q ss_pred cccccccccC------------------CCccCcccCCCCCCcccCcccccccccccHHHHHHHHHhcC Q lcl|Aclame:pro 404 LSRRDAREDP------------------FASSGKTASVPQAVAASDGNKAITETEHDAVKAMFRGILKK 454 (454) Q Consensus 404 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a~~~~~~~~ 454 (454) .......+.. +.+..+....+...+.++..+..+++..++.|...++.++. T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 543 (547) T protein:vir:63 475 LMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDIGKDGQRKDKDNANAGKQGMKGDKPN 543 (547) T ss_pred cccccCCccccchhhccccccccCCCCCCCCCCCCCCcccCCCcCccccccCccccchhhhhcCCCCcc Confidence 3222111100 00001111111122223333444455668899999998888 No 53 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=100.00 E-value=4.7e-81 Score=460.97 Aligned_cols=388 Identities=14% Similarity=0.114 Sum_probs=310.9 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +.||+..+..+..+... ... +...........+.+.|+++++|++||++||+++|++||++++..... T Consensus 3 ~~~~~~~~~~~~~~~~~--~~~----------~~~~~~~~~~~~t~~~~~~~~~v~~cv~~Ia~~ia~~p~~v~~~~~~~ 70 (403) T protein:vir:10 3 FKSWITEKLNPGQRIIR--DME----------PVSHRTNRKPFTTGQAYSKIEILNRTANMVIDSAAECSYTVGDKYNIV 70 (403) T ss_pred chhhhhhccchhhhhhh--ccc----------ccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhhCceeEeeccccc Confidence 88888765543222211 000 011111222335668899999999999999999999999998765433 Q ss_pred c--ceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEe Q lcl|Aclame:pro 81 I--RRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRIT 158 (454) Q Consensus 81 ~--~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~ 158 (454) . .....+++.++|+.+||++||+++||+.++.+++++||||+++.+ ..++++++..+++..+.++...++++ T Consensus 71 ~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~~------~~l~~l~~~~~~v~~~~~~~~~~~~~ 144 (403) T protein:vir:10 71 TYANGVKTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWDG------TSLYHVPAALMQVEADANKFIKKFIF 144 (403) T ss_pred ccccccccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEeC------ceeEeecCcceEEEEcCCceEEEEEe Confidence 2 223455667778889999999999999999999999999988742 36899999999998887654443332 Q ss_pred ccccccccceeEEehhheEEeecCC----CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHH Q lcl|Aclame:pro 159 PDRNCGITEAVTVPAREVIHDRFNC----FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEE 234 (454) Q Consensus 159 ~~~~~~~~~~~~~~~~~vih~~~~~----~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e 234 (454) . ....+++++|||++... +.++++|+||+.++...+....++++++.++|+||++|+++|+.+..++++ T Consensus 145 ~-------~~~~~~~~eiih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e 217 (403) T protein:vir:10 145 N-------NQINYRVDEIIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLDNGTVIGLILETDEILNKK 217 (403) T ss_pred c-------CceeecccceEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHH Confidence 1 12457889999998543 457899999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhcC-cccCCceecCCCceeeeccc--cchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHH Q lcl|Aclame:pro 235 NAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTF--SPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEA 311 (454) Q Consensus 235 ~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~ 311 (454) ++++++++|++.++| +|+|++++|++|++++++++ ++.|+||+|.+++++++||++|||||.+||. ++++|+++ T Consensus 218 ~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~---~~~sn~e~ 294 (403) T protein:vir:10 218 LRERKQEELQLDYNPSTGQSSVLILDGGMKAKPYSQISSFKDLDFKEDIEGFNKSICLAFGVPQVLLDG---GNNANIRP 294 (403) T ss_pred HHHHHHHHHHHHhCCcccCcceeecCCCceeEEecccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCC---CCCcCHHH Confidence 999999999999987 68999999999999999986 5779999999999999999999999999975 36789999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhh--hhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCC-- Q lcl|Aclame:pro 312 LEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTL--LRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLA-- 387 (454) Q Consensus 312 ~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l--~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~-- 387 (454) +.+.|+++||.|++++|+++||++| ++++.||++.+ ++.|.+++++++.+++++|++|+||+|+++|+||+| T Consensus 295 ~~~~f~~~tl~P~~~~ie~~l~~~L----~~~~~~d~~~~~~l~~D~~~~~~~~~~~~~~G~lT~NE~R~~~gl~pi~~~ 370 (403) T protein:vir:10 295 NIELFYYMTIIPMLNKLTSSLTFFF----GYKITPNTKEVAALTPDKEAEAKHLTSLVNNGIITGNEARSELNLEPLDDE 370 (403) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc----CceeeeccchhhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCcc Confidence 9999999999999999999999988 34677888855 889999999999999999999999999999999995 Q ss_pred CccccccccccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 388 GGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 388 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) ++|.+++|.|+........+..... ++..++++ T Consensus 371 ~~d~~~~p~n~~~~~~~~~~~e~~~-------------~~~~~~g~ 403 (403) T protein:vir:10 371 QMNKIRIPANVAGSATGVSGQEGGR-------------PKGSTEGD 403 (403) T ss_pred cccccccccccccccccCCCCcCCC-------------CCCCcCCC Confidence 6999999988764322111111111 11111111 No 54 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=100.00 E-value=1.7e-80 Score=457.89 Aligned_cols=343 Identities=19% Similarity=0.259 Sum_probs=297.5 Q ss_pred hcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEE Q lcl|Aclame:pro 66 IAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEP 145 (454) Q Consensus 66 va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~ 145 (454) ||++|+++++.++. ..++.+.+|+.+||++||+.+||+.++.+++++||||++++|+.+|++++||||+|.+|++ T Consensus 1 ia~lp~~~~~~~~~-----~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~l~~~~v~~ 75 (348) T protein:vir:93 1 MASLPLKMYEDYKV-----VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEM 75 (348) T ss_pred CcccceEeEecCcC-----cccHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCCceEE Confidence 99999999975443 2455666677799999999999999999999999999999999999999999999999999 Q ss_pred EECCCCce-eeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCccee Q lcl|Aclame:pro 146 LVADDGEV-FYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGV 224 (454) Q Consensus 146 ~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~ 224 (454) ..+.++.. .|.+... .+..+.+++++|||++..++.++++|+||+..+...+....++++++. +.++..++++ T Consensus 76 ~~~~~~~~~~y~~~~~----~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~i 149 (348) T protein:vir:93 76 LIENQSRELYYSIHAA----TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNL--TEMQKPDSFM 149 (348) T ss_pred EEeCCCcEEEEEEEcC----CCeEEEEccccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHH--HhcCCCceeE Confidence 98877644 4444322 235678999999999988888999999999999999999999988864 3444456788 Q ss_pred EecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccc Q lcl|Aclame:pro 225 IEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPP 304 (454) Q Consensus 225 l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~ 304 (454) +..+..+++++.++++++|++.++ |+|+++++++|+++++++++++|+||+|.+++++++||++|||||.+||+.+++ T Consensus 150 ~~~~~~l~~e~~~~~~~~~~~~~~--n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~ 227 (348) T protein:vir:93 150 LKYGSNVSTEKRQQVLEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNT 227 (348) T ss_pred EecCCCCCHHHHHHHHHHHHHHhh--cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCC Confidence 888999999999999999999884 678999999999999999999999999999999999999999999999999999 Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc----cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHH Q lcl|Aclame:pro 305 SSDNVEALEQQYYSQCLQTLIESIELLLDEALETGE----NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKR 380 (454) Q Consensus 305 ~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~----~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~ 380 (454) +++|+|++.++|+++||.|+++.|+++||++|+++. +.+++||.+.+++.|.+++++++.+++++|++|+||+|++ T Consensus 228 ~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~a~~~~~~~~~G~~T~NE~R~~ 307 (348) T protein:vir:93 228 NFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREW 307 (348) T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHH Confidence 999999999999999999999999999999999764 4678999999999999999999999999999999999999 Q ss_pred hcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCC Q lcl|Aclame:pro 381 ENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQA 426 (454) Q Consensus 381 ~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (454) +|++|+||||.+++++|+++++..........+...... ++ T Consensus 308 ~g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~~gg~~n~~-----~~ 348 (348) T protein:vir:93 308 EDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVN-----ES 348 (348) T ss_pred hCCCCCCCcCeEeecccccccccchhhcccccCCCCCcC-----CC Confidence 999999999999999999998764333221111111000 00 No 55 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=100.00 E-value=7.5e-80 Score=454.36 Aligned_cols=384 Identities=16% Similarity=0.222 Sum_probs=315.9 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) ++||++.++... +......+|.... ...+.+.+..+..++.+.++++|+|++||++||+++|++|+++++ T Consensus 1 M~~f~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~------ 70 (386) T protein:vir:48 1 MPIFNITNLATE-SPPISQGGFFDIT---DPDFLSTLNGSEWVSAESALRNSDLFSIINQLSNDLATVKLTASR------ 70 (386) T ss_pred Cccccccccccc-ccccccccccccc---cchhcccccCCceechhhhhcchHHHHHHHHHHHhhccCceeecc------ Confidence 455544333221 1222222332222 223445667788899999999999999999999999999999984 Q ss_pred ceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCce-eeEEecc Q lcl|Aclame:pro 82 RRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEV-FYRITPD 160 (454) Q Consensus 82 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~-~~~~~~~ 160 (454) +....++.+||++||+.+||+.++.+++++||+|++++|+.+|++++|+|++|++|++..+.+|.. .|++... T Consensus 71 ------~~~~~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~ 144 (386) T protein:vir:48 71 ------KQLQGIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNITFD 144 (386) T ss_pred ------chhHHHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceEEEEEEec Confidence 235678999999999999999999999999999999999999999999999999999999887654 4444433 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~ 240 (454) ....+....+++++|||++.+++.+.++|+||+..+...|....++++++.++|+||++|+++|+.+...++++.++++ T Consensus 145 -~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ii~~~~~~~~e~~~~~~ 223 (386) T protein:vir:48 145 -DPRIPPKQHVPQGDVLHFKLLSVDGGLTSVSPLMALSRELNIQKASDKLTLNSLKNALNANGILKIKGGGLLDFKTKLS 223 (386) T ss_pred -CccccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHH Confidence 2333456789999999999888888899999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQC 320 (454) Q Consensus 241 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~ 320 (454) +.|.... .|+|+++||++|++|++++++++|+||+|++++++++||++|||||.+||+ .++++|.+++.++|++.| T Consensus 224 ~~~~~~~--~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~--~~~~~~~e~~~~~~~~~~ 299 (386) T protein:vir:48 224 RSRQAMK--QMQGGPLVLDDLEEFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPENVVGG--QGDQQSSLEMSLDLYNKA 299 (386) T ss_pred HHHHHhh--cCCCCceecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC--CCCcccHHHHHHHHHHHH Confidence 9887655 578999999999999999999999999999999999999999999999986 346789999999999999 Q ss_pred HHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccccc-ccccc Q lcl|Aclame:pro 321 LQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYL-QQQNY 399 (454) Q Consensus 321 i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~-~~~~~ 399 (454) |.|+++.||++|+++|++. +.+++...++.|...++..+.+++++|++|+||+|+++|++|+++++.... ..+.. T Consensus 300 l~P~~~~ie~~l~~~l~~~----~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~lg~~~~~~~~~~~~~~~~~~ 375 (386) T protein:vir:48 300 VSRYLRPFLSELSQKLSCD----VDADILPAVDPTGSNSVSRINSMVKSGTLAQNQGLYILQQAEILPKELPEGENPNKT 375 (386) T ss_pred HHHHHHHHHHHHHHhhcch----hhcchhhhhccChHHHHHHHHHHHhCCCcCHHHHHHHhhcCCCCCccchhhcCCCCC Confidence 9999999999999999864 456677777889899999999999999999999999999999877664322 12222 Q ss_pred cccccccccccc Q lcl|Aclame:pro 400 SLEALSRRDARE 411 (454) Q Consensus 400 ~~~~~~~~~~~~ 411 (454) ++.+. +.+..+ T Consensus 376 ~~~gG-d~~~~~ 386 (386) T protein:vir:48 376 TLKGG-EINGED 386 (386) T ss_pred ccCCC-CCCCCC Confidence 22110 000000 No 56 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=100.00 E-value=1.9e-79 Score=452.19 Aligned_cols=447 Identities=12% Similarity=0.121 Sum_probs=308.5 Q ss_pred Ccch--hhhhccccccccccCcc---cchhhhhhhhhh--------ccccccCCccccHHHHHhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MWNL--LRRTRKNQKSGRDVREA---GWTSLFQAVAEP--------FAGAWQQGVKADPEAVLSFHAVFACISLISQDIA 67 (454) Q Consensus 1 m~n~--f~r~~~~~~~~~~~~~~---~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va 67 (454) |++- +.+.......+...... .|...+...+.. .......+.-+..-..++...|++|+.+|+.++| T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~iv~~~i~~~~~~V~~~~~~i~~~ia 120 (574) T protein:vir:80 41 PYSMESIEKGMNGKTTAYMQPIIGEMSVNPGYKTKPSIRNSQDLHKTLKKFGNNIILNAIINTRSNQVSMYCKPARNSET 120 (574) T ss_pred CCCHHHHHHhHhhhcccccchhhhhccccccccCcCccCCcccHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHhhhc Confidence 3332 11111111111100000 011100000000 0001111222233334456678888888888999 Q ss_pred ccceEEEecccccc---ceehhhhHHHHhhhh----ccccC-CHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEec Q lcl|Aclame:pro 68 KMRLRLMQTDAQGI---RRETRRGDIARLCRR----PNAQQ-NRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILD 139 (454) Q Consensus 68 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~----pn~~~-~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~ 139 (454) ++||+|+..+.+++ ......|+++.++.+ |||++ ++.+|++.++.+++++||+|++++|+.+|++++||||+ T Consensus 121 ~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~~nP~~~s~~ef~~~lv~~lll~Gnayi~i~r~~~G~~~~L~pl~ 200 (574) T protein:vir:80 121 GVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQFRDPNRDNFTTFCKKLVRATYMYDQVNFEKVFDKDGNFIKFDTVD 200 (574) T ss_pred cCceEEEEeccCCCccchhhhhhhHHHHHHhccCCCCCCccccHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEEc Confidence 99999997765432 233455666666653 55664 78899999999999999999999999999999999999 Q ss_pred CcceEEEECCCCce-----eeEEeccccccccceeEEehhheEEeecCCCcC---cccccchhhhhHhHHHHHHHHHHHH Q lcl|Aclame:pro 140 WNRVEPLVADDGEV-----FYRITPDRNCGITEAVTVPAREVIHDRFNCFFH---PLIGLPPVYAAGLAATQGHHIQENS 211 (454) Q Consensus 140 ~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~---~~~G~s~l~~~~~~i~~~~~~~~~~ 211 (454) |.+|++..+.++.. .|++.. ..+....+++++|||+++++..+ +.||+||+..+...|....++++++ T Consensus 201 p~~V~v~~d~~~~~~~~~~~y~~~~----~g~~~~~~~~~eiih~~~~~~~~~~~~~~G~spi~~a~~~i~~~~~a~~~~ 276 (574) T protein:vir:80 201 PTTIFLATNGEGKLIKNGERFVQVI----DNRIVAKFNERELAFAVRNPRADIEVGQYGYPELEIALKQFIAHENTEVFN 276 (574) T ss_pred CceeEEEEcCccccccCceEEEEEe----CCceEEEEccccEEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHH Confidence 99999998876632 222222 23456779999999999875543 6789999999999999999999999 Q ss_pred HHHHhccCCcceeEecCcc--CCHHHHHHHHHHHHHHhcC-cccCCce-ecCCCceeeeccccchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 212 TSFFRNGGRPSGVIEIPGS--ITEENAKKLKSNWDSGYTG-ENAGKTA-ILSNGAKYNPTTFSPVDSQTVEQLKMTAEIV 287 (454) Q Consensus 212 ~~~~~ng~~p~~~l~~~~~--~s~e~~~~~~~~~~~~~~g-~n~g~~~-vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~I 287 (454) .++|+||++|+++|+++.+ +++++++++++.|++.++| .|+|+++ ++++|++|++++++++|+||+|++++++++| T Consensus 277 ~~~f~ng~~p~gil~~~~~~~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~~~G~~~~~l~~s~~D~qfle~~~~~~~~I 356 (574) T protein:vir:80 277 DRFFSHGGTTRGILHVKTGQQQSQQALDIFRREWRSSLAGINGSWQIPVVSAEDVKFVNMTPSANDMQFEKWLNYLINVI 356 (574) T ss_pred HHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEEccCChhHHHHHHHHHHHHHHH Confidence 9999999999999998643 7999999999999999987 6899875 4578999999999999999999999999999 Q ss_pred HHHhccchhhhccccc----------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc--eeeecchhhhhcC Q lcl|Aclame:pro 288 CSVFRVPAYKIGVGQP----------PSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENE--STEFDVTTLLRMD 355 (454) Q Consensus 288 a~~fgvp~~~lg~~~~----------~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~--~~~f~~~~l~~~d 355 (454) |++|||||.+||..+. .|++|+|++...|+++||.|++.+||++||++|++..+. +++|+..+++..+ T Consensus 357 a~afgVPp~~lG~~~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~~~~~~f~~~d~~~~~ 436 (574) T protein:vir:80 357 SALYGIDPAEINFPNNGGATGSKGGSLNEGNSKEKMQASQNKGLQPLLRFIEDTVNTYIVAEFGEKYQFQFRGGDLSAQL 436 (574) T ss_pred HHHhCCCHHHhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCceEEEecccchhhHH Confidence 9999999999997654 357999999999999999999999999999999976554 4455544444332 Q ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCc------ccCCCCCCcc Q lcl|Aclame:pro 356 SERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGK------TASVPQAVAA 429 (454) Q Consensus 356 ~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 429 (454) ++. .+..++.+|+||+||+|+++|+||+||||.++++.++++++........+...+.... ....+..++. T Consensus 437 --~~~-~~~~~~~~G~lT~NE~R~~lgl~Pi~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (574) T protein:vir:80 437 --DKL-KIIEQEGKVFRTVNEIRHDKGLEPIKGGDVILNGVHIQAIGQALQEEQLEYQRSQDRLNRLLELSGGDVEQPEP 513 (574) T ss_pred --HHH-HHHHHHhCCccCHHHHHHHhCCCCCCCCCEeeeccceeecccccccccCCccchhccccccccccCCCCCCCCC Confidence 222 2345788999999999999999999999999999999999866544332221111111 1111111111 Q ss_pred cCc---ccccccccc------cHHHHHHHHHhcC Q lcl|Aclame:pro 430 SDG---NKAITETEH------DAVKAMFRGILKK 454 (454) Q Consensus 430 ~d~---~~~~~~~~~------~~~~a~~~~~~~~ 454 (454) +.. .....+... +.-++.+.+-++. T Consensus 514 ~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (574) T protein:vir:80 514 EEPKDSQNDTDVSFQDEQQGLNGKSKKVNGKVDD 547 (574) T ss_pred CCCCCccccccchhhhhhhhhccchhhhcCCccc Confidence 110 000111111 1111222222221 No 57 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=100.00 E-value=1.5e-79 Score=452.69 Aligned_cols=383 Identities=16% Similarity=0.192 Sum_probs=296.8 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +||+|++...+..... . ..|................++..|+.+.|+++++|++||++||++||++|+++++... T Consensus 5 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~ia~lp~~~~~~~~-- 79 (392) T protein:vir:74 5 ILNFINQTNDPPEAGS-V--QSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) T ss_pred hhhhhhcccCcccccc-c--ccccccCchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhccCceeeccchh-- Confidence 4444444333222111 1 1111111111111112234677899999999999999999999999999999985432 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCc-eeeEEec Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE-VFYRITP 159 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~-~~~~~~~ 159 (454) ..|+.+||++||+.+||+.++.+++++||||++++|+.+|.+.+|+||+|++|++..+.++. ..|+++. T Consensus 80 ----------~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~y~~~~ 149 (392) T protein:vir:74 80 ----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITF 149 (392) T ss_pred ----------hhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEe Confidence 34788999999999999999999999999999999999999999999999999999987664 4555543 Q ss_pred cccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHH Q lcl|Aclame:pro 160 DRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKL 239 (454) Q Consensus 160 ~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~ 239 (454) . ....+....++++||||++..++.+.++|+||+.++...|....++++++.++|+||++|+++|+++.+.+.++ +. T Consensus 150 ~-~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~~~~~~--~~ 226 (392) T protein:vir:74 150 D-DPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD--KD 226 (392) T ss_pred c-CCccceeEEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchH--HH Confidence 3 33344567899999999998887777899999999999999999999999999999999999999987654432 33 Q ss_pred HHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHH Q lcl|Aclame:pro 240 KSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYS 318 (454) Q Consensus 240 ~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~ 318 (454) +++|.+.+.| .|+|+++||++|++|++++++++|+||+|++++.+++||++|||||++||+.++. +++ +++..+|++ T Consensus 227 ~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~-~~~-~e~~~~~~~ 304 (392) T protein:vir:74 227 KASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QSS-IQQISGMYA 304 (392) T ss_pred HHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCc-ccH-HHHHHHHHH Confidence 4566666654 6899999999999999999999999999999999999999999999999986553 344 566788999 Q ss_pred HHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh---cCCCCCCccccccc Q lcl|Aclame:pro 319 QCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRE---NLPPLAGGDALYLQ 395 (454) Q Consensus 319 ~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~---g~~p~~~~d~~~~~ 395 (454) ++|.|+++.|+++|+++|++. ++|+++.+++.|.++++..+.+++++|++|+||+|+++ |+.|. ..... T Consensus 305 ~~l~p~~~~ie~~l~~~l~~~----~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~near~~~~~~g~~pn----e~r~~ 376 (392) T protein:vir:74 305 SALNRYLRPAISELEYKLSDH----ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK----DLPAP 376 (392) T ss_pred HHHHHHHHHHHHHHHHhccch----hcccchhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHHHhCCCCcc----ccchh Confidence 999999999999999999864 67899999999999999999999999999999999987 33321 11111 Q ss_pred cccccccccccccccccCCCccCcccCCCCC Q lcl|Aclame:pro 396 QQNYSLEALSRRDAREDPFASSGKTASVPQA 426 (454) Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (454) .|+-++.+.. ..++.+ T Consensus 377 enl~~~~~Gd---------------~~~p~p 392 (392) T protein:vir:74 377 ENTNKKTTGQ---------------SNEPVP 392 (392) T ss_pred cCCCCCCCCC---------------CCCCCC Confidence 1111111100 000000 No 58 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=100.00 E-value=2.7e-79 Score=451.32 Aligned_cols=375 Identities=15% Similarity=0.197 Sum_probs=303.0 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) |||+|.+..+..+.........+.. .+. .+..+..++.+.|+++++|++||++||+++|++|+++++ T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~~p~~v~~----- 69 (385) T protein:vir:10 3 LLTPRNFNKRKAKNMVYPSNPAFFT-------TTV-GGMQLSYVSALSALQNTNVYSVINRIASDVASAHFKTEN----- 69 (385) T ss_pred cccchhcccccccccccccchhhhh-------hhc-cccCccccCHHHhhccHHHHHHHHHHHHHHhhCceeeec----- Confidence 7776543332222221111111111 111 123456789999999999999999999999999999973 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) |....++.+||++||+++||+.++.+++++||||++++|+ +.+++|+++.+|++..+..+. +|++... T Consensus 70 -------~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~----~~~~~p~~~~~v~~~~~~~~~-~~~~~~~ 137 (385) T protein:vir:10 70 -------TATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----NLEHIPNSDVQINYLPGNMGI-VYTVLES 137 (385) T ss_pred -------cchhhhhhcCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC----ceeEeecCCceEEEEEcCCce-EEEEEEc Confidence 2344577899999999999999999999999999999875 567889999999988876553 3444322 Q ss_pred ccccccceeEEehhheEEeecCC--CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCC-HHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNC--FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSIT-EENAK 237 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~--~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s-~e~~~ 237 (454) ..+..+.+++++|||+++.+ ..++++|+||+..+...|....++++++.++|+||++|+++++++...+ +++.+ T Consensus 138 ---~~~~~~~~~~~eiihik~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~~~~~e~~~ 214 (385) T protein:vir:10 138 ---NDRPQMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLE 214 (385) T ss_pred ---CCceEEEEccccEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHH Confidence 23456789999999999754 3568899999999999999999999999999999999999999998764 78999 Q ss_pred HHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHH-HHHHHHHHHHHHHhccchhhhcccc--cccccCHHHHHH Q lcl|Aclame:pro 238 KLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTV-EQLKMTAEIVCSVFRVPAYKIGVGQ--PPSSDNVEALEQ 314 (454) Q Consensus 238 ~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~-e~~~~~~~~Ia~~fgvp~~~lg~~~--~~~~~n~e~~~~ 314 (454) ++++.|++.++|.|+|+++++++|++|+++++++.|+|++ |.+++++++||++|||||++||+.+ +.+++|+|++.. T Consensus 215 ~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~ 294 (385) T protein:vir:10 215 SAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA 294 (385) T ss_pred HHHHHHHHHhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHHHHH Confidence 9999999999999999999999999999999999999985 9999999999999999999999754 557899987766 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcc--cc Q lcl|Aclame:pro 315 QYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGD--AL 392 (454) Q Consensus 315 ~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d--~~ 392 (454) .| ..||.|+++.|+++|+++|+.+ .++|+++.+++.|.+++++.+.+++++|++|+||+|+++|++|+|+++ .. T Consensus 295 ~~-~~~l~P~~~~ie~~l~~~l~~~---~~~f~~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~p~~~~~~~ 370 (385) T protein:vir:10 295 TY-LANLNSYVNPIVDELRLKMNAP---DLELDIKDMLDVDDSALINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEF 370 (385) T ss_pred HH-HHHHHHHHHHHHHHHHHhhCCc---eEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCccCCCCCccc Confidence 55 5699999999999999999865 489999999999999999999999999999999999999999997644 33 Q ss_pred ccccccccccccccccc Q lcl|Aclame:pro 393 YLQQQNYSLEALSRRDA 409 (454) Q Consensus 393 ~~~~~~~~~~~~~~~~~ 409 (454) .++.+.+..+..++ . T Consensus 371 ~~~~~~~~~g~~~d--n 385 (385) T protein:vir:10 371 KPLTTQVKGGDEGD--N 385 (385) T ss_pred cCcccccCCCCCCC--C Confidence 43333221110000 0 No 59 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=100.00 E-value=2.7e-79 Score=451.32 Aligned_cols=384 Identities=12% Similarity=0.124 Sum_probs=301.4 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +|+||+++....... ..|.. ..+ ....+..+..++.+.++++++|++||++||+++|++||++++.++ T Consensus 3 l~~~~~~~~~~~~~~-----~~~~~--~~~---~~~~~~~~~~vt~~~al~~~~v~~~i~~Ia~~iA~lp~~v~~~~g-- 70 (394) T protein:vir:62 3 LRDRFSNYLFKKAEK-----RGYLD--NVL---GKSIRYSGVYVTDSNILQSSDVYELLQDISNQMVLADIVVEDEFG-- 70 (394) T ss_pred hhhhhhhhccCCCCc-----hhhhh--hhh---hcccccCccccChhhhhccHHHHHHHHHHHHhhcccceEEEcCCC-- Confidence 888887554322211 11211 111 123445667789999999999999999999999999999986433 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) + ...+|+++.|+.+||++||+.+||+.++.+++++||+|+++.++..+ + +..+.+..++++...|.+ T Consensus 71 ~--~~~~~~~~~Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~~~----~----~~~~~~~~~~~~~~~~~~--- 137 (394) T protein:vir:62 71 N--EIKDDIALQILRNPNNYLTQSEFIKLMTNTYLLEGETFPILNGAQIH----L----ASNVFTELDDNLVEHFNI--- 137 (394) T ss_pred c--ccchhhHHHHhccCCCCCCHHHHHHHHHHHHHhcCCeEEEEecceee----c----cccceEEECCceEEEEee--- Confidence 2 23567778899999999999999999999999999999998654332 2 235666666655433322 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCC--HHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSIT--EENAKK 238 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s--~e~~~~ 238 (454) ....|++++|||++.+ +.++++|+||+..+...|....++++++.++|+||+.|+++++++...+ +++.++ T Consensus 138 ------~~~~~~~~eiih~r~~-~~d~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~ 210 (394) T protein:vir:62 138 ------GGHEIPPCMIRHVKNI-GADHLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLNLDAHINPQNGAQSK 210 (394) T ss_pred ------CCEEechhheEEecCc-CCCCccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCCCCcCHHHHHH Confidence 1357899999999965 4688999999999999999999999999999999999999999988765 556889 Q ss_pred HHHHHHHHhcC-cccCCceecCCCc--eeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH Q lcl|Aclame:pro 239 LKSNWDSGYTG-ENAGKTAILSNGA--KYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ 315 (454) Q Consensus 239 ~~~~~~~~~~g-~n~g~~~vl~~g~--~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~ 315 (454) +++.|++.++| .|+|+++|++.|. ++++++.+++|+|++|.+++++++||++|||||.+||+. +++|+|++... T Consensus 211 ~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~---~~sn~e~~~~~ 287 (394) T protein:vir:62 211 LINAILDQLESIDEARSVKMIPLGKGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTEL---IKEDIEKAMMY 287 (394) T ss_pred HHHHHHHHhccccccCceeEeeCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCCC---CCcCHHHHHHH Confidence 99999999987 6899999997765 666888899999999999999999999999999999864 46799999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCccc-ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCC--CCcccc Q lcl|Aclame:pro 316 YYSQCLQTLIESIELLLDEALETGEN-ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPL--AGGDAL 392 (454) Q Consensus 316 ~~~~~i~P~~~~ie~~l~~~l~~~~~-~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~--~~~d~~ 392 (454) |+++||.|++++||++||++|+++.. ..+.|+++.....+..++++++.+++++|+||+||+|+++|+||+ ++||.+ T Consensus 288 ~~~~~l~P~~~~ie~~l~~kll~~~~~~~~~~~fd~~~~~~~~~~~~~~~~~~~~g~~T~NE~R~~~gl~p~~~~~gd~~ 367 (394) T protein:vir:62 288 IHNKAVRPIMKNFEDHLSLLFYAQNSGKRIKFKINILDFVTYSNKTNIGYNLVRTAITSPDNVADMLGFPKQNTKESQAI 367 (394) T ss_pred HHHHHHHHHHHHHHHHHhhhhcCccccCceEEEechhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCee Confidence 99999999999999999999987633 234444444333455578899999999999999999999999998 789999 Q ss_pred ccccccccccccccccccccCCCccCcccCCCCC Q lcl|Aclame:pro 393 YLQQQNYSLEALSRRDAREDPFASSGKTASVPQA 426 (454) Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (454) |+++++++++......... .+.+. +++ T Consensus 368 ~~~~n~~~~~~~~~~~~~~---kgge~----~en 394 (394) T protein:vir:62 368 YISNDVTEIGKKEATDGSL---GGGEE----NEN 394 (394) T ss_pred ecccccccccccccccccC---CCCCC----CCC Confidence 9999998875432211111 00000 011 No 60 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=100.00 E-value=6.7e-79 Score=449.16 Aligned_cols=446 Identities=16% Similarity=0.168 Sum_probs=317.5 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccC----CccccHHHHHhhHHHHHHHHHHHHhhcc-------- Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQ----GVKADPEAVLSFHAVFACISLISQDIAK-------- 68 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~i~~ia~~va~-------- 68 (454) |+|.+.++.....++... ++....+........+... ......+.+-.+++|++||+.+++.+|. T Consensus 42 ~~~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~ 118 (563) T protein:vir:99 42 EYQDLTKSLYGQQQAYAE---PFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYS 118 (563) T ss_pred hHHHHHhhhccCCCcchh---hhHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhh Confidence 889887765433322211 1222211111111111111 1222344555689999999999999885 Q ss_pred -----cceEEEeccccccce-ehhhhHHHHhhh----hcccc-CCHHHHHHHHHHHHHHhCCeEEEEe--eCCCCceeEE Q lcl|Aclame:pro 69 -----MRLRLMQTDAQGIRR-ETRRGDIARLCR----RPNAQ-QNRIQFFELWLNAKLRHGNTVVLKI--RNARGQIKEL 135 (454) Q Consensus 69 -----~~~~~~~~~~~~~~~-~~~~~~~~~l~~----~pn~~-~~~~~f~~~~~~~~ll~G~~~i~~~--r~~~G~~~~l 135 (454) ++++++..+..+... ....+++..++. .|||+ +|+.+|+++++.+++++||+|++++ |+..|++++| T Consensus 119 ~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L 198 (563) T protein:vir:99 119 EKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKF 198 (563) T ss_pred cccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEE Confidence 566666555544332 233344444443 33443 5889999999999999999999876 7778999999 Q ss_pred EEecCcceEEEECCCCceeeE---EeccccccccceeEEehhheEEeecCCCcC---cccccchhhhhHhHHHHHHHHHH Q lcl|Aclame:pro 136 RILDWNRVEPLVADDGEVFYR---ITPDRNCGITEAVTVPAREVIHDRFNCFFH---PLIGLPPVYAAGLAATQGHHIQE 209 (454) Q Consensus 136 ~~l~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~vih~~~~~~~~---~~~G~s~l~~~~~~i~~~~~~~~ 209 (454) |||+|++|++..+.+|...+. |++. ..++....++++++||+++++..+ +.||+||+.++...|....++++ T Consensus 199 ~pl~p~~V~v~~~~~g~~~~~~~~y~~~--~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~ 276 (563) T protein:vir:99 199 IAVDPSTIFYATDKKGKIIKGGKRFVQV--VDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNTES 276 (563) T ss_pred EEeCCceeEEEECCCCceeccceeEEEE--eCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHHHH Confidence 999999999999988764321 1111 112345678999998887666544 77899999999999999999999 Q ss_pred HHHHHHhccCCcceeEecCcc--CCHHHHHHHHHHHHHHhcC-cccCCc-eecCCCceeeeccccchhhHHHHHHHHHHH Q lcl|Aclame:pro 210 NSTSFFRNGGRPSGVIEIPGS--ITEENAKKLKSNWDSGYTG-ENAGKT-AILSNGAKYNPTTFSPVDSQTVEQLKMTAE 285 (454) Q Consensus 210 ~~~~~~~ng~~p~~~l~~~~~--~s~e~~~~~~~~~~~~~~g-~n~g~~-~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~ 285 (454) ++.++|+||++|+++|+++.+ +++++++++++.|++.++| .|+|++ +|+++|++|++++++++|+||+++++++++ T Consensus 277 ~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~ 356 (563) T protein:vir:99 277 FNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYLIN 356 (563) T ss_pred HHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHHHHH Confidence 999999999999999998754 6899999999999999988 688986 789999999999999999999999999999 Q ss_pred HHHHHhccchhhhcccccc-----------cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhc Q lcl|Aclame:pro 286 IVCSVFRVPAYKIGVGQPP-----------SSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRM 354 (454) Q Consensus 286 ~Ia~~fgvp~~~lg~~~~~-----------~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~ 354 (454) +||++|||||++||+.+.+ +++|++++...|+++||.|+++.||++||++|++..+..+.|++ ++. T Consensus 357 ~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~~~~~~~f---~r~ 433 (563) T protein:vir:99 357 IISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEYGDKYTFQF---VGG 433 (563) T ss_pred HHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcccccEEEe---ccC Confidence 9999999999999986644 55899999999999999999999999999999987766666664 567 Q ss_pred CHHHHHHHHH--HHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCc---------cCcccCC Q lcl|Aclame:pro 355 DSERRMKTLG--DAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFAS---------SGKTASV 423 (454) Q Consensus 355 d~~~~~~~~~--~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 423 (454) |.+++++.+. +++++|+||+||+|+++|+||+||||.++++.++.+++........+..... .....+. T Consensus 434 D~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (563) T protein:vir:99 434 DTKSATDKLNILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDD 513 (563) T ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhcccccCCCCCC Confidence 8888877654 4688999999999999999999999999999888877654333221111100 0111111 Q ss_pred CCCCcccCcccccccccccH-------HHHHHHHHhcC Q lcl|Aclame:pro 424 PQAVAASDGNKAITETEHDA-------VKAMFRGILKK 454 (454) Q Consensus 424 ~~~~~~~d~~~~~~~~~~~~-------~~a~~~~~~~~ 454 (454) +.+...++++....+...++ ++..+-+.+++ T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (563) T protein:vir:99 514 SEEGQSTDSSNDDKEIGTDAQIKGDDNVYRTQTSNKGQ 551 (563) T ss_pred CCCCCCCCCCCCccccccccccccccccccccCccccc Confidence 11111111111111111111 11222222222 No 61 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=100.00 E-value=6.7e-79 Score=449.16 Aligned_cols=446 Identities=16% Similarity=0.168 Sum_probs=317.5 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccC----CccccHHHHHhhHHHHHHHHHHHHhhcc-------- Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQ----GVKADPEAVLSFHAVFACISLISQDIAK-------- 68 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~i~~ia~~va~-------- 68 (454) |+|.+.++.....++... ++....+........+... ......+.+-.+++|++||+.+++.+|. T Consensus 42 ~~~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~ 118 (563) T protein:vir:95 42 EYQDLTKSLYGQQQAYAE---PFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYS 118 (563) T ss_pred hHHHHHhhhccCCCcchh---hhHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhh Confidence 889887765433322211 1222211111111111111 1222344555689999999999999885 Q ss_pred -----cceEEEeccccccce-ehhhhHHHHhhh----hcccc-CCHHHHHHHHHHHHHHhCCeEEEEe--eCCCCceeEE Q lcl|Aclame:pro 69 -----MRLRLMQTDAQGIRR-ETRRGDIARLCR----RPNAQ-QNRIQFFELWLNAKLRHGNTVVLKI--RNARGQIKEL 135 (454) Q Consensus 69 -----~~~~~~~~~~~~~~~-~~~~~~~~~l~~----~pn~~-~~~~~f~~~~~~~~ll~G~~~i~~~--r~~~G~~~~l 135 (454) ++++++..+..+... ....+++..++. .|||+ +|+.+|+++++.+++++||+|++++ |+..|++++| T Consensus 119 ~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L 198 (563) T protein:vir:95 119 EKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKF 198 (563) T ss_pred cccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEE Confidence 566666555544332 233344444443 33443 5889999999999999999999876 7778999999 Q ss_pred EEecCcceEEEECCCCceeeE---EeccccccccceeEEehhheEEeecCCCcC---cccccchhhhhHhHHHHHHHHHH Q lcl|Aclame:pro 136 RILDWNRVEPLVADDGEVFYR---ITPDRNCGITEAVTVPAREVIHDRFNCFFH---PLIGLPPVYAAGLAATQGHHIQE 209 (454) Q Consensus 136 ~~l~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~vih~~~~~~~~---~~~G~s~l~~~~~~i~~~~~~~~ 209 (454) |||+|++|++..+.+|...+. |++. ..++....++++++||+++++..+ +.||+||+.++...|....++++ T Consensus 199 ~pl~p~~V~v~~~~~g~~~~~~~~y~~~--~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~ 276 (563) T protein:vir:95 199 IAVDPSTIFYATDKKGKIIKGGKRFVQV--VDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNTES 276 (563) T ss_pred EEeCCceeEEEECCCCceeccceeEEEE--eCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHHHH Confidence 999999999999988764321 1111 112345678999998887666544 77899999999999999999999 Q ss_pred HHHHHHhccCCcceeEecCcc--CCHHHHHHHHHHHHHHhcC-cccCCc-eecCCCceeeeccccchhhHHHHHHHHHHH Q lcl|Aclame:pro 210 NSTSFFRNGGRPSGVIEIPGS--ITEENAKKLKSNWDSGYTG-ENAGKT-AILSNGAKYNPTTFSPVDSQTVEQLKMTAE 285 (454) Q Consensus 210 ~~~~~~~ng~~p~~~l~~~~~--~s~e~~~~~~~~~~~~~~g-~n~g~~-~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~ 285 (454) ++.++|+||++|+++|+++.+ +++++++++++.|++.++| .|+|++ +|+++|++|++++++++|+||+++++++++ T Consensus 277 ~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~ 356 (563) T protein:vir:95 277 FNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYLIN 356 (563) T ss_pred HHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHHHHH Confidence 999999999999999998754 6899999999999999988 688986 789999999999999999999999999999 Q ss_pred HHHHHhccchhhhcccccc-----------cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhc Q lcl|Aclame:pro 286 IVCSVFRVPAYKIGVGQPP-----------SSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRM 354 (454) Q Consensus 286 ~Ia~~fgvp~~~lg~~~~~-----------~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~ 354 (454) +||++|||||++||+.+.+ +++|++++...|+++||.|+++.||++||++|++..+..+.|++ ++. T Consensus 357 ~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~~~~~~~f---~r~ 433 (563) T protein:vir:95 357 IISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEYGDKYTFQF---VGG 433 (563) T ss_pred HHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcccccEEEe---ccC Confidence 9999999999999986644 55899999999999999999999999999999987766666664 567 Q ss_pred CHHHHHHHHH--HHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCc---------cCcccCC Q lcl|Aclame:pro 355 DSERRMKTLG--DAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFAS---------SGKTASV 423 (454) Q Consensus 355 d~~~~~~~~~--~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 423 (454) |.+++++.+. +++++|+||+||+|+++|+||+||||.++++.++.+++........+..... .....+. T Consensus 434 D~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (563) T protein:vir:95 434 DTKSATDKLNILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDD 513 (563) T ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhcccccCCCCCC Confidence 8888877654 4688999999999999999999999999999888877654333221111100 0111111 Q ss_pred CCCCcccCcccccccccccH-------HHHHHHHHhcC Q lcl|Aclame:pro 424 PQAVAASDGNKAITETEHDA-------VKAMFRGILKK 454 (454) Q Consensus 424 ~~~~~~~d~~~~~~~~~~~~-------~~a~~~~~~~~ 454 (454) +.+...++++....+...++ ++..+-+.+++ T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (563) T protein:vir:95 514 SEEGQSTDSSNDDKEIGTDAQIKGDDNVYRTQTSNKGQ 551 (563) T ss_pred CCCCCCCCCCCCccccccccccccccccccccCccccc Confidence 11111111111111111111 11222222222 No 62 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=100.00 E-value=1.5e-78 Score=447.31 Aligned_cols=375 Identities=15% Similarity=0.212 Sum_probs=302.0 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +||++...++..+.........|. ... .....+..++.+.|+++++|++||++||+++|++|+++++. T Consensus 3 ~~~~~~~~k~~~~~~~~~~~~~~~------~~~--~~~~~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~~~~~~~~---- 70 (383) T protein:vir:10 3 LLTPKNFSKRNAKNMVYPSNPAFF------TTT--VGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT---- 70 (383) T ss_pred cccccccccccccccccccchhhh------hhh--ccCccccccchhHhhcchHHHHHHHHHHHhhccCceeeccc---- Confidence 555322111111111111111111 111 11234556889999999999999999999999999999732 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) ....++.+||++||+.+||+.++.+++++||||++++++ +.+++|+++.+|++..+.++ .+|++... T Consensus 71 --------~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~----~~~~~p~~~~~v~~~~~~~~-~~~~~~~~ 137 (383) T protein:vir:10 71 --------ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----NLEHIPNSDVQINYLPGNMG-IVYTVLES 137 (383) T ss_pred --------chhhhhhCCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC----ceeEeecCcceEEEEEcCCc-eEEEEEEc Confidence 234567899999999999999999999999999999864 56788888888888777655 33444332 Q ss_pred ccccccceeEEehhheEEeecCC--CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCC-HHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNC--FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSIT-EENAK 237 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~--~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s-~e~~~ 237 (454) ..+..+.|++++|||+|..+ ..++.+|+||+.++...|....++++++.++|+||++|+++|++++..+ +++.+ T Consensus 138 ---~~~~~~~~~~~evih~r~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~~e~~~ 214 (383) T protein:vir:10 138 ---NDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLE 214 (383) T ss_pred ---CCceEEEEcccceEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHH Confidence 23456789999999999654 3567899999999999999999999999999999999999999998774 78999 Q ss_pred HHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHH-HHHHHHHHHHHHHhccchhhhcccc--cccccCHHHHHH Q lcl|Aclame:pro 238 KLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTV-EQLKMTAEIVCSVFRVPAYKIGVGQ--PPSSDNVEALEQ 314 (454) Q Consensus 238 ~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~-e~~~~~~~~Ia~~fgvp~~~lg~~~--~~~~~n~e~~~~ 314 (454) ++++.|++.++|.|+|+++++++|++|+++++++.|++++ +++++.+++||++|||||++||+.+ +.+++|+|++.. T Consensus 215 ~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~eq~~~ 294 (383) T protein:vir:10 215 SAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA 294 (383) T ss_pred HHHHHHHHHhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccccHHHHHH Confidence 9999999999999999999999999999999999999985 8999999999999999999999754 567889999877 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccccc Q lcl|Aclame:pro 315 QYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYL 394 (454) Q Consensus 315 ~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~ 394 (454) .|. .||.|+++.|+++|+++|+.+ .++|+++.+++.|.+++++.+.+++++|++|+||+|+++|++|++++|.... T Consensus 295 ~~~-~~l~P~~~~ie~~l~~~l~~~---~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~~~ 370 (383) T protein:vir:10 295 TYL-ANLNSYVNPIVDELRLKMNAP---DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEF 370 (383) T ss_pred HHH-HHHHHHHHHHHHHHHHhhCCc---eEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccCCccccc Confidence 665 699999999999999999754 5899999999999999999999999999999999999999999999986554 Q ss_pred ccccccccccccc Q lcl|Aclame:pro 395 QQQNYSLEALSRR 407 (454) Q Consensus 395 ~~~~~~~~~~~~~ 407 (454) ..+..++.+..+. T Consensus 371 ~~~~~~~~gGd~e 383 (383) T protein:vir:10 371 KPLTNETKGGDDK 383 (383) T ss_pred CCCcccCCCCCCC Confidence 3332222111110 No 63 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=100.00 E-value=2.2e-78 Score=446.35 Aligned_cols=383 Identities=16% Similarity=0.186 Sum_probs=295.6 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +||+|+|...+................. ....+ ....+..|+.+.++++++|++||++||+++|++|+++++... T Consensus 5 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 79 (392) T protein:vir:10 5 ILNFINQTNDPPEVGSVQSYFPDGNDAQ-IMESL--LGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) T ss_pred hhhhhhcccccccccccccccccCchhh-hhhhh--cCCCCceechHHhhccHHHHHHHHHHHHhhccCceeeccchh-- Confidence 4444443333222221111111111111 11111 223467789999999999999999999999999999985332 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCce-eeEEec Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEV-FYRITP 159 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~-~~~~~~ 159 (454) ..|+.+||++||+.+||+.++.+++++||+|++++|+.+|++++|+|++|++|++..+.++.. .|+++. T Consensus 80 ----------~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~ 149 (392) T protein:vir:10 80 ----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITF 149 (392) T ss_pred ----------hhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEe Confidence 357889999999999999999999999999999999999999999999999999999876654 444443 Q ss_pred cccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHH Q lcl|Aclame:pro 160 DRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKL 239 (454) Q Consensus 160 ~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~ 239 (454) . ....+....++++||||+++.++.+.++|+||+.++...|....++++++.++|+||++|+++|+++.....+ ++. T Consensus 150 ~-~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~--~~~ 226 (392) T protein:vir:10 150 D-DPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS--DKD 226 (392) T ss_pred c-CcccceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCch--HHH Confidence 3 3344456789999999999888777789999999999999999999999999999999999999998765433 233 Q ss_pred HHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHH Q lcl|Aclame:pro 240 KSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYS 318 (454) Q Consensus 240 ~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~ 318 (454) +++|.+.+.+ .|+|+++||++|++|++++++++|+||++.+++++++||++|||||.+||+..+. . +.+++..+|++ T Consensus 227 ~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~-~-~~~~~~~~f~~ 304 (392) T protein:vir:10 227 KASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-Q-SSIQQISGMYA 304 (392) T ss_pred HHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCc-c-cHHHHHHHHHH Confidence 4556666644 6889999999999999999999999999999999999999999999999976543 2 44566788999 Q ss_pred HHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh---cCCCCCCccccccc Q lcl|Aclame:pro 319 QCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRE---NLPPLAGGDALYLQ 395 (454) Q Consensus 319 ~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~---g~~p~~~~d~~~~~ 395 (454) +||.|+++.|+++||++|++. ++||...+++.|.+++++.+.+++++|++|+||+|+++ |+.|.+ +... T Consensus 305 ~~l~P~~~~ie~~l~~~L~~~----~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~e----~r~~ 376 (392) T protein:vir:10 305 SALNRYLRPAISELEYKLSDH----ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD----LPAP 376 (392) T ss_pred HHHHHHHHHHHHHHHHhcccc----ccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCccc----cchh Confidence 999999999999999999864 67888889999999999999999999999999999987 554321 1000 Q ss_pred cccccccccccccccccCCCccCcccCCCCC Q lcl|Aclame:pro 396 QQNYSLEALSRRDAREDPFASSGKTASVPQA 426 (454) Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (454) .++-++.+. +...+.+ T Consensus 377 e~l~~~~~G---------------d~~~p~p 392 (392) T protein:vir:10 377 ENTNKKTTG---------------QSNEPVP 392 (392) T ss_pred cCCCCCCCC---------------CCCCCCC Confidence 111111100 0000011 No 64 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=100.00 E-value=2.2e-78 Score=446.35 Aligned_cols=383 Identities=16% Similarity=0.186 Sum_probs=295.6 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +||+|+|...+................. ....+ ....+..|+.+.++++++|++||++||+++|++|+++++... T Consensus 5 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 79 (392) T protein:vir:39 5 ILNFINQTNDPPEVGSVQSYFPDGNDAQ-IMESL--LGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) T ss_pred hhhhhhcccccccccccccccccCchhh-hhhhh--cCCCCceechHHhhccHHHHHHHHHHHHhhccCceeeccchh-- Confidence 4444443333222221111111111111 11111 223467789999999999999999999999999999985332 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCce-eeEEec Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEV-FYRITP 159 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~-~~~~~~ 159 (454) ..|+.+||++||+.+||+.++.+++++||+|++++|+.+|++++|+|++|++|++..+.++.. .|+++. T Consensus 80 ----------~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~ 149 (392) T protein:vir:39 80 ----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITF 149 (392) T ss_pred ----------hhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEe Confidence 357889999999999999999999999999999999999999999999999999999876654 444443 Q ss_pred cccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHH Q lcl|Aclame:pro 160 DRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKL 239 (454) Q Consensus 160 ~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~ 239 (454) . ....+....++++||||+++.++.+.++|+||+.++...|....++++++.++|+||++|+++|+++.....+ ++. T Consensus 150 ~-~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~--~~~ 226 (392) T protein:vir:39 150 D-DPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS--DKD 226 (392) T ss_pred c-CcccceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCch--HHH Confidence 3 3344456789999999999888777789999999999999999999999999999999999999998765433 233 Q ss_pred HHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHH Q lcl|Aclame:pro 240 KSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYS 318 (454) Q Consensus 240 ~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~ 318 (454) +++|.+.+.+ .|+|+++||++|++|++++++++|+||++.+++++++||++|||||.+||+..+. . +.+++..+|++ T Consensus 227 ~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~-~-~~~~~~~~f~~ 304 (392) T protein:vir:39 227 KASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-Q-SSIQQISGMYA 304 (392) T ss_pred HHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCc-c-cHHHHHHHHHH Confidence 4556666644 6889999999999999999999999999999999999999999999999976543 2 44566788999 Q ss_pred HHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh---cCCCCCCccccccc Q lcl|Aclame:pro 319 QCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRE---NLPPLAGGDALYLQ 395 (454) Q Consensus 319 ~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~---g~~p~~~~d~~~~~ 395 (454) +||.|+++.|+++||++|++. ++||...+++.|.+++++.+.+++++|++|+||+|+++ |+.|.+ +... T Consensus 305 ~~l~P~~~~ie~~l~~~L~~~----~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~e----~r~~ 376 (392) T protein:vir:39 305 SALNRYLRPAISELEYKLSDH----ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD----LPAP 376 (392) T ss_pred HHHHHHHHHHHHHHHHhcccc----ccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCccc----cchh Confidence 999999999999999999864 67888889999999999999999999999999999987 554321 1000 Q ss_pred cccccccccccccccccCCCccCcccCCCCC Q lcl|Aclame:pro 396 QQNYSLEALSRRDAREDPFASSGKTASVPQA 426 (454) Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (454) .++-++.+. +...+.+ T Consensus 377 e~l~~~~~G---------------d~~~p~p 392 (392) T protein:vir:39 377 ENTNKKTTG---------------QSNEPVP 392 (392) T ss_pred cCCCCCCCC---------------CCCCCCC Confidence 111111100 0000011 No 65 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=100.00 E-value=2.5e-78 Score=446.02 Aligned_cols=451 Identities=16% Similarity=0.157 Sum_probs=306.6 Q ss_pred Ccchhhhhc--------------------------c-ccccccccCcccchhhhhhhhhhcccc--cc--------CCcc Q lcl|Aclame:pro 1 MWNLLRRTR--------------------------K-NQKSGRDVREAGWTSLFQAVAEPFAGA--WQ--------QGVK 43 (454) Q Consensus 1 m~n~f~r~~--------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~ 43 (454) +.|+|.|.+ . ......+..........+.++.+.+.. +. .+.. T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~~~~~~p~~~~~~~~~~ 84 (576) T protein:vir:96 5 LADIFKRLRLGRDYEDIIDTVPIDDGLQANIRNIEEKSKELNKSLYGKQQAYAEPFLEVMDTNPEFRTKRSYMKNSDNLH 84 (576) T ss_pred HHHHHHHHhccCccccchhhhhcccChhHHHHHhhhhhhhhccccCCccchhhcceeeeeecCCCccccCcchhhhhhhH Confidence 333332221 0 000000000000000001001111110 00 1111 Q ss_pred ccHHHHHhhHHHHHHHHHHHHhhcc-----------cceEEEeccccccc---eehhh----hHHHHhhhhcccc-CCHH Q lcl|Aclame:pro 44 ADPEAVLSFHAVFACISLISQDIAK-----------MRLRLMQTDAQGIR---RETRR----GDIARLCRRPNAQ-QNRI 104 (454) Q Consensus 44 ~~~~~~~~~~~v~~~i~~ia~~va~-----------~~~~~~~~~~~~~~---~~~~~----~~~~~l~~~pn~~-~~~~ 104 (454) -..+.+..+|+|++||++||+.||+ ++|.+..+..++.. ..... +.+..++..|||+ +|+. T Consensus 85 ~~l~~~~~npiv~~~I~~ia~~vA~~~~~~~~~~~~~~~~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~ 164 (576) T protein:vir:96 85 DVLKQFGNNPILNAIILTRSNQVAMYCQPSRYNERGLGFEVRMRDLDAEPGKKEKEEIKRIENFILNTGRDKDIDRDSFQ 164 (576) T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHhhhhhhhhccccccceeEEecCcCccchhhhHhhhhHHhhHhhccCCCCCccccHH Confidence 1224455789999999999999997 34444433333221 11111 2333444556665 5899 Q ss_pred HHHHHHHHHHHHhCCeEEEEeeC--CCCceeEEEEecCcceEEEECCCCceeeEEec-cccccccceeEEehhheEEeec Q lcl|Aclame:pro 105 QFFELWLNAKLRHGNTVVLKIRN--ARGQIKELRILDWNRVEPLVADDGEVFYRITP-DRNCGITEAVTVPAREVIHDRF 181 (454) Q Consensus 105 ~f~~~~~~~~ll~G~~~i~~~r~--~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~vih~~~ 181 (454) +||+.++.+++++||+|++++++ +.|.+++||||+|++|++..+.+|..+++... ......+....++++++||+++ T Consensus 165 ~f~~~lv~dlll~Gna~~~i~~~rd~~g~~~~L~pl~p~~V~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~ 244 (576) T protein:vir:96 165 SFCRKIVRDTYTYDQVNFEKVFNKKNATTMDKFIAVDPSTIFYATDKNGKIIKGGKRFVQVINKKVVASFTSREMAMGIR 244 (576) T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCCCceEEEEEeCCceeEEEECCCCceeeeeeEEEEecCCceEEEecccceEEEee Confidence 99999999999999999999854 45789999999999999999998865543211 1112234556789999998887 Q ss_pred CCCcC---cccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCc--cCCHHHHHHHHHHHHHHhcC-cccCCc Q lcl|Aclame:pro 182 NCFFH---PLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPG--SITEENAKKLKSNWDSGYTG-ENAGKT 255 (454) Q Consensus 182 ~~~~~---~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~--~~s~e~~~~~~~~~~~~~~g-~n~g~~ 255 (454) ++..+ +.||+||+.++...|....++++++.++|+||++|+++|+++. .+++++++++++.|++.++| .|+|++ T Consensus 245 ~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lr~~~~~~~~G~~nag~~ 324 (576) T protein:vir:96 245 NPRTELSSSGYGLSEVEIAMKQFIAYNNTETFNDRFFSHGGTTRGILQIKSEQQQSQRALENFKREWKSSFSGINGSWQV 324 (576) T ss_pred cCCCCcccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccc Confidence 76554 6789999999999999999999999999999999999999875 46899999999999999988 688885 Q ss_pred -eecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccc-----------cccCHHHHHHHHHHHHHHH Q lcl|Aclame:pro 256 -AILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPP-----------SSDNVEALEQQYYSQCLQT 323 (454) Q Consensus 256 -~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~-----------~~~n~e~~~~~~~~~~i~P 323 (454) +|+++|++|++++++++|+||+|++++.+++||++|||||.+||+.+.+ |++|+|++...|+++||.| T Consensus 325 p~vl~~G~~~~~ls~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s~t~sn~e~~~~~f~~~tL~P 404 (576) T protein:vir:96 325 PVVMADDIKFVNMTPTANDMQFEKWLTYLINIISALYGIDPAEIGFPNRGGATGGKGGNTLNEADPGKKQQQSQNKGLQP 404 (576) T ss_pred eeecCCCceEEeccCChhhHHHHHHHHHhHHHHHHHhCCCHHHccccccccccccccccccccccHHHHHHHHHHHHHHH Confidence 7899999999999999999999999999999999999999999986543 7899999999999999999 Q ss_pred HHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHH--HHhCCCcCHHHHHHHhcCCCCCCccccccccccccc Q lcl|Aclame:pro 324 LIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGD--AVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSL 401 (454) Q Consensus 324 ~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~--~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~ 401 (454) ++..||++||++|++..+..+.|++ ++.|.+++++.+.. ++.+|+||+||+|+++||||+||||.++.+.++.++ T Consensus 405 ~~~~ie~~ln~~Ll~~~~~~~~~~f---~r~d~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~piegGD~~~~~~~~~~~ 481 (576) T protein:vir:96 405 LLRFIEDLINTHIISEYSDKYVFQF---VGGDTKSELDKIKILQEEVKTYKTVNEARKEKGLKPIEGGDVLLDGSFIQSM 481 (576) T ss_pred HHHHHHHHHHhhhchhccCceEEEe---ccCCHHHHHHHHHHHHHHhcCccCHHHHHHHhCCCCCCCcceeccccccccc Confidence 9999999999999987666666654 56787777776654 456799999999999999999999999999888887 Q ss_pred cccccccccccCCCccCcc-------cCCCC-CCcccCcccccccccccHHHH---HHHHHhcC Q lcl|Aclame:pro 402 EALSRRDAREDPFASSGKT-------ASVPQ-AVAASDGNKAITETEHDAVKA---MFRGILKK 454 (454) Q Consensus 402 ~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~d~~~~~~~~~~~~~~a---~~~~~~~~ 454 (454) +.....+..+.+.+..... .+.+. +.+....++...+..++..+. .=+.-.+| T Consensus 482 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~g~~~~~~~~~~~~~~~~~~~~ 545 (576) T protein:vir:96 482 SLNTQKEQYEDTKQKERFDMIQQFLNSPDDEEPQQESTEDKVDGRESNDPTKIDSPVGTDGQLK 545 (576) T ss_pred cccccCCCCCCccccccccccccccCCCCCCCCCCCCCCCcccccccccCCCCCCccccccccC Confidence 6544333222221111000 00000 000000011111111111000 11112222 No 66 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=100.00 E-value=2.1e-77 Score=440.97 Aligned_cols=350 Identities=17% Similarity=0.285 Sum_probs=294.1 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +||.|+|+.. ..+..|...+. ..+.+..+..|+.+.|+++++|++||++||++||++|+. T Consensus 3 ~~~~f~~r~~-------~~~~~~~~~~~-----~~~~~~~~~~v~~~~al~~~av~~cv~~ia~~ia~~p~~-------- 62 (359) T protein:vir:10 3 ILNPFERRSS-------ITPNNYYPFMV-----QNGSIVPNSLVDATEALKNSDLYAVTSLISSDIAGTRFI-------- 62 (359) T ss_pred ccchhhcccc-------CCCCcchhhhh-----ccccccCCcccCHHHhhcchHHHHHHHHHHHhhhcCccc-------- Confidence 7887765322 11222322221 133566778899999999999999999999999999983 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) .++.+..|+.+||++||+.+||+.++.+++++||+|++++|+.+|.+.+|+|++|+.|++..++ +..+|.|... T Consensus 63 -----~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~g~~~~l~~l~~~~v~i~~~~-~~~~y~~~~~ 136 (359) T protein:vir:10 63 -----GNQVFTSVLNNPSHLTNAFSFWQTAILNLLLNGNVFLAILKGDNSLMKELRLIPSNAITIDLTD-DTLTYEVNQF 136 (359) T ss_pred -----cchHHHHHhhcccccCCHHHHHHHHHHhccccCceEEEEEECCCCeEEEEEEeCCceEEEEEcC-CeEEEEEEec Confidence 4677889999999999999999999999999999999999999999999999999999998875 4566666532 Q ss_pred ccccccceeEEehhheEEeecCC----CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCc-cCCHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNC----FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPG-SITEEN 235 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~----~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~-~~s~e~ 235 (454) . .+....++++||||++..+ +.++++|+||+..+...|....+++++..++|+||++|+++|++++ .+++++ T Consensus 137 ~---~~~~~~~~~~evih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~ 213 (359) T protein:vir:10 137 D---DYPSAKYNASEMIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQGTLSSEA 213 (359) T ss_pred C---CceEEEEcccceEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHH Confidence 2 2446789999999999764 3578899999999999999999999999999999999999999986 579999 Q ss_pred HHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccc--ccccCHHHHH Q lcl|Aclame:pro 236 AKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP--PSSDNVEALE 313 (454) Q Consensus 236 ~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~--~~~~n~e~~~ 313 (454) .+++++.|++.++|.|+|+++||++|++|++++++++|+||+|.+++++++||++|||||++||+.++ .++++++++. T Consensus 214 ~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~e~~~ 293 (359) T protein:vir:10 214 KDSIRKEFEKANGGNNSGRVMVLDQSADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQQSSLDQIKDLY 293 (359) T ss_pred HHHHHHHHHHHhCccccCCceecCCCcceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCcccccHHHHHHHH Confidence 99999999999988999999999999999999999999999999999999999999999999987654 3566778888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCC Q lcl|Aclame:pro 314 QQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLA 387 (454) Q Consensus 314 ~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~ 387 (454) ..|+..++.|+...|+..|++++. ++...+.+.|.......+.+++++|++|+||+|+++|++|+= T Consensus 294 ~~~l~~~l~p~~~~l~~~l~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~G~~t~NE~R~~l~~~pv~ 359 (359) T protein:vir:10 294 VNALNRFIEPLISELRIKCDSSIG--------VDMSPITDYSNSVFKADILNWVKEGIIEPTEAKTLLESKGII 359 (359) T ss_pred HHHHHHHHHHHHHHHHHHhhhhhc--------ccchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 888888888888888777776653 344444444555556667789999999999999999999975 No 67 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=100.00 E-value=3.3e-77 Score=439.86 Aligned_cols=372 Identities=17% Similarity=0.235 Sum_probs=309.6 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +.||+++........ .....+ +......+.+.+.++..++.+.|+++++|++||++||+++|++|+++++... T Consensus 1 Mglf~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~v~~~~al~~~~V~~~i~~Ia~~ia~l~~~~~~~~~--- 73 (384) T protein:vir:49 1 MPIFNITNLATESPP-SNQDSF---FDITDPEFLDALNGSEWVSAETALKNSDLFSIISQLSNDLATAKITTSRKQL--- 73 (384) T ss_pred CccccccccCccccc-ccchhh---ccccchhhcccccCCceechhhhhccHHHHHHHHHHHHHHhhCceeeecchh--- Confidence 566655433222111 111112 2222333455677788899999999999999999999999999999985332 Q ss_pred ceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCc-eeeEEecc Q lcl|Aclame:pro 82 RRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE-VFYRITPD 160 (454) Q Consensus 82 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~-~~~~~~~~ 160 (454) ..++.+||++||+.+|++.++.+++++||+|++++|+.+|++++|+||+|++|++..+.++. ..|.+... T Consensus 74 ---------~~l~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~ 144 (384) T protein:vir:49 74 ---------QGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNQNGLYYNITFD 144 (384) T ss_pred ---------hhhhhccCCCCCHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEec Confidence 35789999999999999999999999999999999999999999999999999998876544 45555443 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~ 240 (454) +...+..+.+++++|||++..++.+.++|+||+.++...|....++++++.++|+||++|+++|++++..++++.++. T Consensus 145 -~~~~~~~~~~~~~eVih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~- 222 (384) T protein:vir:49 145 -DPRIPPKQHVPQGDILHFRLLSVDGGLTSVSPLMALGRELNIQKASDKLTLNALKNALNANGILKIKGGGLLDFKTKQ- 222 (384) T ss_pred -CccccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHHHHH- Confidence 334456688999999999988887889999999999999999999999999999999999999999988887665432 Q ss_pred HHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccc--ccccCHHHHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP--PSSDNVEALEQQYYS 318 (454) Q Consensus 241 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~--~~~~n~e~~~~~~~~ 318 (454) ......+++|+|++++|++|++|++++++++|+|++|.+++++++||++|||||++||+.+. +++++.+++...|++ T Consensus 223 -~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~~~~~~~~i~ 301 (384) T protein:vir:49 223 -SRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGEGDKQSSLEMIYNIYFKAVS 301 (384) T ss_pred -HHHHHhcccCCccceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccccHHHHHHHHHHHHH Confidence 22333345789999999999999999999999999999999999999999999999998543 355678899999999 Q ss_pred HHHHHHHHHHHHHHHHhhcC-------cccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccc Q lcl|Aclame:pro 319 QCLQTLIESIELLLDEALET-------GENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDA 391 (454) Q Consensus 319 ~~i~P~~~~ie~~l~~~l~~-------~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~ 391 (454) .++.|+...|+++|++++.. ....+++|+++.+++.+..++.++...+.+.|+++ ||+|+.+|++|++|||. T Consensus 302 ~~l~pi~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~e~~~~l~~~g~~~-ne~r~~~~~~p~~gGd~ 380 (384) T protein:vir:49 302 RFLRPFVSELSKKLSCEVDADILPAVDPTGSNYIGLINSMVKTGTLAQNQGLYVLQQAEILP-KDLPEGETDSTLKGGET 380 (384) T ss_pred HHHHHHHHHHHHHhchhhhhhhhhhhhccchHHHHHHHHHhhcCcccHHHHHHHHhhCCCCC-hhHHHHcCCCCCCCCCC Confidence 99999999999999998742 23456789999999999999999999999999876 99999999999999874 Q ss_pred --cc Q lcl|Aclame:pro 392 --LY 393 (454) Q Consensus 392 --~~ 393 (454) .| T Consensus 381 ~~~~ 384 (384) T protein:vir:49 381 NEQY 384 (384) T ss_pred CCCC Confidence 34 No 68 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=100.00 E-value=3.4e-76 Score=434.33 Aligned_cols=384 Identities=16% Similarity=0.232 Sum_probs=308.9 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +.||++.++.... .......|. ......+...+..+..++.+.++++|+|++||++||+++|++|+++++.. T Consensus 1 M~~f~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~~p~~~~~~~---- 72 (386) T protein:vir:49 1 MPIFNITNLATES-PPINQESFF---DIADSDFLASLNSSEWVSAENALKNSDLFSIISQLSNDLATAKITTSRKQ---- 72 (386) T ss_pred CchhhhhccCCCC-cccchhhhh---hhhhccccccccCCceechhhhhccHHHHHHHHHHHHHhhhCceeeccch---- Confidence 5566555443222 122222222 22233344566778889999999999999999999999999999998533 Q ss_pred ceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCc-eeeEEecc Q lcl|Aclame:pro 82 RRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE-VFYRITPD 160 (454) Q Consensus 82 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~-~~~~~~~~ 160 (454) ...++.+||++||+.+||+.++.+++++||||++++|+.+|++++|+|++|++|++..+.++. ..|.|.. T Consensus 73 --------~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~i~~~~v~v~~~~~~~~~~y~~~~- 143 (386) T protein:vir:49 73 --------LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRDMKWEYLRPSQVSFNRLDNQNGLYYNITF- 143 (386) T ss_pred --------hhhhhhccCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceEEEEEEE- Confidence 235789999999999999999999999999999999999999999999999999999987665 4444443 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~ 240 (454) .....+..+.+++++|||++.+++.+.++|+||+.++...|....++.+++.++|+||++|+++|++++..++++.++++ T Consensus 144 ~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~ 223 (386) T protein:vir:49 144 DDPHIAPKQHVPQNDILHFRLLSVDGGLTSVSPLMALGREFNIQKASDKLTISALKNALNANGILKIKGGGLLDFKTKVS 223 (386) T ss_pred cCccccceeEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEeCCCCChHHHHHHH Confidence 23344566789999999999888888899999999999999999999999999999999999999999999999999998 Q ss_pred HHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQC 320 (454) Q Consensus 241 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~ 320 (454) +.|+... .|+|+++|+++|+++++++++++|+||+|++++.+++||++|||||.+||+.++ +++|.+++ +.|+..+ T Consensus 224 ~~~~~~~--~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~~~~~~~~-~~~~~~~ 299 (386) T protein:vir:49 224 RSRQAMK--QMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGDGD-QQSSLEMI-YNIYFKS 299 (386) T ss_pred HHHHHhc--cCCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC-ccchHHHH-HHHHHHH Confidence 8887644 688999999999999999999999999999999999999999999999997544 56776654 5788899 Q ss_pred HHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccc-cccc Q lcl|Aclame:pro 321 LQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQ-QQNY 399 (454) Q Consensus 321 i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~-~~~~ 399 (454) |.|+++.|+++|+++|.+ ++.|+.+.+++.|.+.++..+.+++++|++|+||+|++++..++...+..... .+.. T Consensus 300 i~~~l~~i~~~~~~~l~~----~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~~~~~~~~~~~~~~~~~ 375 (386) T protein:vir:49 300 VSRYLRPFVSEMSKKLSC----EVDVDISPAVDPTGSNYISLINSMVKSGTLAQNQGLYILQQAEILPKELPDGKNPNRT 375 (386) T ss_pred HHHHHHHHHHHHHHHhcc----hhcccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHhhCCCCCCcCcchhccCCC Confidence 999999999999999975 46789999999999999999999999999999999999876554222111000 0000 Q ss_pred cccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 400 SLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) ++ . + .+.++.+ T Consensus 376 ~~--------------~-g--------Gd~~~~~ 386 (386) T protein:vir:49 376 SL--------------K-G--------GEINEQD 386 (386) T ss_pred CC--------------C-C--------CCCCCCC Confidence 00 0 0 0000000 No 69 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=100.00 E-value=1.5e-75 Score=430.73 Aligned_cols=434 Identities=14% Similarity=0.126 Sum_probs=302.6 Q ss_pred Ccchhhhhcccccccccc---Ccccchh--------hhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDV---REAGWTS--------LFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKM 69 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~ 69 (454) |++-=.++... ..+... .+.+|.. .+..+...+... .-...-.+++..+.++++|+.+|++.++++ T Consensus 36 ~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~i~t~~~~va~~~~i~~~s~~~~~~ 112 (535) T protein:vir:10 36 IRPGRASARDT-VDGIDIADGNVAGQYSVASISDVLSTKKLLKAYADN--DIVQAIIRTRTNQVLTYSNPSRYNRNGVGF 112 (535) T ss_pred hhhhhhhhhcc-ccccccccCCcccccccCccccccCHHHHHHHhccC--hhHHHHHHHHHHHHHHHHHHHHHhcccCcc Confidence 22211110000 000000 0000100 000000000000 001112345667788999999999999999 Q ss_pred ceEEEeccccccce-ehhhhH-HHHhhhhccccCCHHH----HHHHHHHHHHHh-CCeEEEEeeCCCCceeEEEEecCcc Q lcl|Aclame:pro 70 RLRLMQTDAQGIRR-ETRRGD-IARLCRRPNAQQNRIQ----FFELWLNAKLRH-GNTVVLKIRNARGQIKELRILDWNR 142 (454) Q Consensus 70 ~~~~~~~~~~~~~~-~~~~~~-~~~l~~~pn~~~~~~~----f~~~~~~~~ll~-G~~~i~~~r~~~G~~~~l~~l~~~~ 142 (454) |++++..+..+... ....|+ ..+|+.+||++|++++ |+++++.+++++ |++|++++|+..|++.+||||+|.+ T Consensus 113 ~i~l~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~~~~~~~~~~~~~lv~d~l~~~g~ay~~i~r~~~G~~~~L~~l~p~~ 192 (535) T protein:vir:10 113 KVELKDATKVMSKAQIKRAHEIEDFIYNTGSEYYEWRDTFPRLLTKIINDMYVQDQINIERIFKNDSNELDHFNAVDASK 192 (535) T ss_pred eeEEEeccCCCcchhhhhhhHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhhCCceEEEEEECCCCcEEEEEEeCCce Confidence 99999776544332 234444 4566679999998876 556677776665 5789999999999999999999999 Q ss_pred eEEEECCCCc---eeeEEeccccccccceeEEehhheEEeecCCCc---CcccccchhhhhHhHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 143 VEPLVADDGE---VFYRITPDRNCGITEAVTVPAREVIHDRFNCFF---HPLIGLPPVYAAGLAATQGHHIQENSTSFFR 216 (454) Q Consensus 143 ~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~---~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ 216 (454) |++..+.++. ..|+++.. .+....|++++|||+++++.. ++.||+||+.++...|....++++++.++|+ T Consensus 193 V~v~~d~~~~~~~~~~~~~~~----~~~~~~~~~~eiih~~~~~~~~~~~~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~ 268 (535) T protein:vir:10 193 VVISYSPRSKDQPRKFEQFVS----ETKSVKFSERNLTFINYWNLSDTDRRGYGYSPVEASIPLIRAIYDTEQFNARFFS 268 (535) T ss_pred eEEEEcCccccCceEEEEEec----CceeEEECcccEEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 9999886553 22222221 234567999999999986543 3678999999999999999999999999999 Q ss_pred ccCCcceeEecCcc----CCHHHHHHHHHHHHHHhcC-cccCCceecC-CCceeeeccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 217 NGGRPSGVIEIPGS----ITEENAKKLKSNWDSGYTG-ENAGKTAILS-NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSV 290 (454) Q Consensus 217 ng~~p~~~l~~~~~----~s~e~~~~~~~~~~~~~~g-~n~g~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~ 290 (454) ||++|+++|+++.. +++++++++++.|++.++| .|+|+++|+. +|++|++++++++|+||+|++++++++||++ T Consensus 269 ng~~p~giL~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~eIa~a 348 (535) T protein:vir:10 269 QGGTTRGILVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPILAAKDAKFVNMTQNSRDMEFDKFLNFMIYDTAAI 348 (535) T ss_pred ccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHH Confidence 99999999999753 6889999999999999988 6899987765 7999999999999999999999999999999 Q ss_pred hccchhhhcccccccccC------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHH Q lcl|Aclame:pro 291 FRVPAYKIGVGQPPSSDN------------VEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSER 358 (454) Q Consensus 291 fgvp~~~lg~~~~~~~~n------------~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~ 358 (454) |||||++||..+++||+| +|++...|++.||.|+++.||++||++|++..+..++|+++.+++.|.++ T Consensus 349 fgVPp~~lG~~~~at~sn~~~~~~~~~~s~~E~~~~~~~~~~L~P~l~~ie~~ln~~Ll~~~~~~~~f~f~~l~~~d~~~ 428 (535) T protein:vir:10 349 FQMQPEEINFPNNGGSTGKSGTKSVNEGSTAKAKLESSKDKGLTPLLSFIEQVINDKIMRYVDTDYRFSFTLGDAQDKLQ 428 (535) T ss_pred hCCCHHHhccccCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCeEEEEeccccccCHHH Confidence 999999999988877654 57778889999999999999999999999988888999999999999999 Q ss_pred HHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccccccc---ccccccccccccccccCC---CccCcc---cCC--CC-- Q lcl|Aclame:pro 359 RMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQ---QNYSLEALSRRDAREDPF---ASSGKT---ASV--PQ-- 425 (454) Q Consensus 359 ~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~---~~~--~~-- 425 (454) +++++...+ +|+||+||+|+++|+||+||||..++.. ++...........+.... .+.... ... .. T Consensus 429 r~~~~~~~~-~g~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~q~~~~~~~~~ 507 (535) T protein:vir:10 429 EEQVWKLKL-ANGYFINEYRKDHGLKTVDGLDVPGFIGSAENFINATGFGQPNVPDSSDDSGSTLGERERQERIQHSKDY 507 (535) T ss_pred HHHHHHHHH-cCCCCHHHHHHHhCCCCCCCccccccccchhhcccccccccccCCCCCCCccccCCccccCccccccccc Confidence 988887655 5779999999999999999999765422 222111111111110000 000000 000 00 Q ss_pred CCcccCcccc-----------ccccccc Q lcl|Aclame:pro 426 AVAASDGNKA-----------ITETEHD 442 (454) Q Consensus 426 ~~~~~d~~~~-----------~~~~~~~ 442 (454) ....+|+++. ..++..+ T Consensus 508 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) T protein:vir:10 508 EKGKDDPKSPLPKPSESDDVSNNEDADT 535 (535) T ss_pred ccCCCCCCCCCCcCCCCCccccccccCC Confidence 0001111111 1111112 No 70 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=100.00 E-value=1.4e-75 Score=431.04 Aligned_cols=381 Identities=17% Similarity=0.166 Sum_probs=297.0 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +|++|+++.+ .. ..+. .+..+..++.+.|+++++|++||++||+++|++||++++.+ T Consensus 3 ~f~~lf~~~~---~~-----~~~~------------~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~--- 59 (395) T protein:vir:10 3 ILEKIFKTRK---DI-----TYML------------DLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGN--- 59 (395) T ss_pred hhhhhhccCc---cc-----cccc------------cchhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCC--- Confidence 5554433211 10 0010 12234567788899999999999999999999999998632 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) ....++.+.+|+.+||++||+.+||+.++.++++.|++|+++.++. .++++++..+++....... .+.+... T Consensus 60 --~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~ 131 (395) T protein:vir:10 60 --RIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-----ELLIADSFYREEYALYDDI-FKDVTVK 131 (395) T ss_pred --ccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-----CeEecCCccceeEeecCcc-eeEEEEc Confidence 2345667777888999999999999999999999999988765443 3466666666655444322 2222211 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCcc-CCHHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGS-ITEENAKKL 239 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~-~s~e~~~~~ 239 (454) ..+....+++++|||++++++.+..+|+||+..+...++... +.|.+++.++++|.++.. .++++.+++ T Consensus 132 ---~~~~~~~~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~-------~~~~~~~~~~gii~~~~~~~~~e~~~~~ 201 (395) T protein:vir:10 132 ---DYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMI-------GAQLKNYQIRGILKSASSAYDEKNIEKL 201 (395) T ss_pred ---CceeeeeeccccEEEEccCCCCcccccchHHHHHHHHHHHHH-------HHHHhcCCCceEEEeCCCCCCHHHHHHH Confidence 123346799999999999988889999999999888876544 346778888899988765 589999999 Q ss_pred HHHHHHHhcCcccCCc--eecCCCceeeeccccchhh-----HHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHH Q lcl|Aclame:pro 240 KSNWDSGYTGENAGKT--AILSNGAKYNPTTFSPVDS-----QTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEAL 312 (454) Q Consensus 240 ~~~~~~~~~g~n~g~~--~vl~~g~~~~~l~~~~~d~-----~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~ 312 (454) ++.|++.+++.++++. +++++|++++++++++.++ ||+|++++++++||++|||||++|| ++++|.|++ T Consensus 202 ~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~----~~~sn~e~~ 277 (395) T protein:vir:10 202 QAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY----GETADLEKN 277 (395) T ss_pred HHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CcccCHHHH Confidence 9999999988766654 4579999999999988765 8999999999999999999999997 368899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccc--ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCc- Q lcl|Aclame:pro 313 EQQYYSQCLQTLIESIELLLDEALETGEN--ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGG- 389 (454) Q Consensus 313 ~~~~~~~~i~P~~~~ie~~l~~~l~~~~~--~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~- 389 (454) ..+|+++||.|++.+||++||++|+++.. .+++|+++.+++.|.+++++++.+++++|++|+||+|+++|+||+|+| T Consensus 278 ~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~ 357 (395) T protein:vir:10 278 TLVFEKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPE 357 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhhcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 99999999999999999999999998643 357899999999999999999999999999999999999999999876 Q ss_pred -cccccccccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 390 -DALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 390 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) |++++++|+++++.....+.........+ .+++++|+ T Consensus 358 ~d~~~~~~n~~~~~~~~~~~~~~~~~~~kg-------g~~~~~g~ 395 (395) T protein:vir:10 358 LDEYLITKNYEKANSGENDEKEKDENTLKG-------GDEDESGD 395 (395) T ss_pred CceeeeccccccccccccccCcccccccCC-------CCCCCCCC Confidence 89999999999877655443333221111 11222222 No 71 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=100.00 E-value=1.4e-75 Score=431.04 Aligned_cols=381 Identities=17% Similarity=0.166 Sum_probs=297.0 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +|++|+++.+ .. ..+. .+..+..++.+.|+++++|++||++||+++|++||++++.+ T Consensus 3 ~f~~lf~~~~---~~-----~~~~------------~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~--- 59 (395) T protein:vir:95 3 ILEKIFKTRK---DI-----TYML------------DLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGN--- 59 (395) T ss_pred hhhhhhccCc---cc-----cccc------------cchhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCC--- Confidence 5554433211 10 0010 12234567788899999999999999999999999998632 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) ....++.+.+|+.+||++||+.+||+.++.++++.|++|+++.++. .++++++..+++....... .+.+... T Consensus 60 --~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~ 131 (395) T protein:vir:95 60 --RIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-----ELLIADSFYREEYALYDDI-FKDVTVK 131 (395) T ss_pred --ccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-----CeEecCCccceeEeecCcc-eeEEEEc Confidence 2345667777888999999999999999999999999988765443 3466666666655444322 2222211 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCcc-CCHHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGS-ITEENAKKL 239 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~-~s~e~~~~~ 239 (454) ..+....+++++|||++++++.+..+|+||+..+...++... +.|.+++.++++|.++.. .++++.+++ T Consensus 132 ---~~~~~~~~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~-------~~~~~~~~~~gii~~~~~~~~~e~~~~~ 201 (395) T protein:vir:95 132 ---DYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMI-------GAQLKNYQIRGILKSASSAYDEKNIEKL 201 (395) T ss_pred ---CceeeeeeccccEEEEccCCCCcccccchHHHHHHHHHHHHH-------HHHHhcCCCceEEEeCCCCCCHHHHHHH Confidence 123346799999999999988889999999999888876544 346778888899988765 589999999 Q ss_pred HHHHHHHhcCcccCCc--eecCCCceeeeccccchhh-----HHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHH Q lcl|Aclame:pro 240 KSNWDSGYTGENAGKT--AILSNGAKYNPTTFSPVDS-----QTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEAL 312 (454) Q Consensus 240 ~~~~~~~~~g~n~g~~--~vl~~g~~~~~l~~~~~d~-----~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~ 312 (454) ++.|++.+++.++++. +++++|++++++++++.++ ||+|++++++++||++|||||++|| ++++|.|++ T Consensus 202 ~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~----~~~sn~e~~ 277 (395) T protein:vir:95 202 QAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY----GETADLEKN 277 (395) T ss_pred HHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CcccCHHHH Confidence 9999999988766654 4579999999999988765 8999999999999999999999997 368899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccc--ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCc- Q lcl|Aclame:pro 313 EQQYYSQCLQTLIESIELLLDEALETGEN--ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGG- 389 (454) Q Consensus 313 ~~~~~~~~i~P~~~~ie~~l~~~l~~~~~--~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~- 389 (454) ..+|+++||.|++.+||++||++|+++.. .+++|+++.+++.|.+++++++.+++++|++|+||+|+++|+||+|+| T Consensus 278 ~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~ 357 (395) T protein:vir:95 278 TLVFEKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPE 357 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhhcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 99999999999999999999999998643 357899999999999999999999999999999999999999999876 Q ss_pred -cccccccccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 390 -DALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 390 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) |++++++|+++++.....+.........+ .+++++|+ T Consensus 358 ~d~~~~~~n~~~~~~~~~~~~~~~~~~~kg-------g~~~~~g~ 395 (395) T protein:vir:95 358 LDEYLITKNYEKANSGENDEKEKDENTLKG-------GDEDESGD 395 (395) T ss_pred CceeeeccccccccccccccCcccccccCC-------CCCCCCCC Confidence 89999999999877655443333221111 11222222 No 72 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=100.00 E-value=1.4e-75 Score=431.04 Aligned_cols=381 Identities=17% Similarity=0.166 Sum_probs=297.0 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +|++|+++.+ .. ..+. .+..+..++.+.|+++++|++||++||+++|++||++++.+ T Consensus 3 ~f~~lf~~~~---~~-----~~~~------------~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~--- 59 (395) T protein:vir:10 3 ILEKIFKTRK---DI-----TYML------------DLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGN--- 59 (395) T ss_pred hhhhhhccCc---cc-----cccc------------cchhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCC--- Confidence 5554433211 10 0010 12234567788899999999999999999999999998632 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) ....++.+.+|+.+||++||+.+||+.++.++++.|++|+++.++. .++++++..+++....... .+.+... T Consensus 60 --~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~ 131 (395) T protein:vir:10 60 --RIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-----ELLIADSFYREEYALYDDI-FKDVTVK 131 (395) T ss_pred --ccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-----CeEecCCccceeEeecCcc-eeEEEEc Confidence 2345667777888999999999999999999999999988765443 3466666666655444322 2222211 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCcc-CCHHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGS-ITEENAKKL 239 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~-~s~e~~~~~ 239 (454) ..+....+++++|||++++++.+..+|+||+..+...++... +.|.+++.++++|.++.. .++++.+++ T Consensus 132 ---~~~~~~~~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~-------~~~~~~~~~~gii~~~~~~~~~e~~~~~ 201 (395) T protein:vir:10 132 ---DYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMI-------GAQLKNYQIRGILKSASSAYDEKNIEKL 201 (395) T ss_pred ---CceeeeeeccccEEEEccCCCCcccccchHHHHHHHHHHHHH-------HHHHhcCCCceEEEeCCCCCCHHHHHHH Confidence 123346799999999999988889999999999888876544 346778888899988765 589999999 Q ss_pred HHHHHHHhcCcccCCc--eecCCCceeeeccccchhh-----HHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHH Q lcl|Aclame:pro 240 KSNWDSGYTGENAGKT--AILSNGAKYNPTTFSPVDS-----QTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEAL 312 (454) Q Consensus 240 ~~~~~~~~~g~n~g~~--~vl~~g~~~~~l~~~~~d~-----~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~ 312 (454) ++.|++.+++.++++. +++++|++++++++++.++ ||+|++++++++||++|||||++|| ++++|.|++ T Consensus 202 ~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~----~~~sn~e~~ 277 (395) T protein:vir:10 202 QAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY----GETADLEKN 277 (395) T ss_pred HHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CcccCHHHH Confidence 9999999988766654 4579999999999988765 8999999999999999999999997 368899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccc--ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCc- Q lcl|Aclame:pro 313 EQQYYSQCLQTLIESIELLLDEALETGEN--ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGG- 389 (454) Q Consensus 313 ~~~~~~~~i~P~~~~ie~~l~~~l~~~~~--~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~- 389 (454) ..+|+++||.|++.+||++||++|+++.. .+++|+++.+++.|.+++++++.+++++|++|+||+|+++|+||+|+| T Consensus 278 ~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~ 357 (395) T protein:vir:10 278 TLVFEKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPE 357 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhhcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 99999999999999999999999998643 357899999999999999999999999999999999999999999876 Q ss_pred -cccccccccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 390 -DALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 390 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) |++++++|+++++.....+.........+ .+++++|+ T Consensus 358 ~d~~~~~~n~~~~~~~~~~~~~~~~~~~kg-------g~~~~~g~ 395 (395) T protein:vir:10 358 LDEYLITKNYEKANSGENDEKEKDENTLKG-------GDEDESGD 395 (395) T ss_pred CceeeeccccccccccccccCcccccccCC-------CCCCCCCC Confidence 89999999999877655443333221111 11222222 No 73 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=100.00 E-value=1e-75 Score=431.74 Aligned_cols=430 Identities=15% Similarity=0.130 Sum_probs=295.4 Q ss_pred Ccchhhhhcc---c--cccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEe Q lcl|Aclame:pro 1 MWNLLRRTRK---N--QKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQ 75 (454) Q Consensus 1 m~n~f~r~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~ 75 (454) |||.+-.... . .+............+..++..++ ......+.+..+++|++||++||++||++|++++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~------~~~~La~~~~~n~~v~scI~~ia~~ia~~~~~i~~ 74 (540) T protein:vir:41 1 MFNYHLSIKSLEKYRAIKGDTDSQALKEDRFEEYVEPKV------HPLVLLSLLQVNPYHASACSIKANDILRTGYLIDG 74 (540) T ss_pred CCCcccChhhccchhhhhccccccccccCCCCccccCCC------CHHHHHHHHHhcHHHHHHHHHHHHHHhcCCceEec Confidence 9997633221 1 11111111111111112221111 11122456778999999999999999999999874 Q ss_pred ccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCce-- Q lcl|Aclame:pro 76 TDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEV-- 153 (454) Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~-- 153 (454) .... +.. ..||++||+.+||++++.+++++||||++++|+.+|.+++|+||+|++|++..+..+.. T Consensus 75 ~~~~----------~~~--~lpN~~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~ 142 (540) T protein:vir:41 75 DDGG----------VEE--LLRACRPSFEFILLQALEDLQVFNYCTLEVVRDDQGEPVRLDYIPAHTVRVHRDGSRYMQT 142 (540) T ss_pred Cccc----------hhh--hccCCCCCHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCcceEEeEcCceeEee Confidence 3221 112 23999999999999999999999999999999999999999999999999987664322 Q ss_pred -----eeEEeccc------cccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcc Q lcl|Aclame:pro 154 -----FYRITPDR------NCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPS 222 (454) Q Consensus 154 -----~~~~~~~~------~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~ 222 (454) .+++..+. ...+.....+++++|||++.+++.++++|+||+.++...|....++.+++.++|+||++|+ T Consensus 143 ~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eViHir~~~~~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~ 222 (540) T protein:vir:41 143 WDGIHVTYFKDYRYEGEVNPDNGEDQDGVGANEIIFIHLPSPICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPS 222 (540) T ss_pred ecCceeeeeecccccceeeccccccceeecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCc Confidence 11111111 0122334678999999999998999999999999999999999999999999999999999 Q ss_pred eeEecCccCCHHH----------HHHHHHHHHHHhcC--cccCCceecC------CCceeeeccccchhhHHHHHHHHHH Q lcl|Aclame:pro 223 GVIEIPGSITEEN----------AKKLKSNWDSGYTG--ENAGKTAILS------NGAKYNPTTFSPVDSQTVEQLKMTA 284 (454) Q Consensus 223 ~~l~~~~~~s~e~----------~~~~~~~~~~~~~g--~n~g~~~vl~------~g~~~~~l~~~~~d~~~~e~~~~~~ 284 (454) ++|++++.+++++ .+++++.|.+.+.| .|+|+++||+ +|++|++++++++|+||+|++++++ T Consensus 223 giL~~~g~l~~e~~~~~~~~~~~~~~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~ 302 (540) T protein:vir:41 223 YVITVTGEFEDEMELGSDGEPTGRTVLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKK 302 (540) T ss_pred eEEEeCcccCchhccchHHHHHHHHHHHHHHHHHhccccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHH Confidence 9999987765432 35566667777765 5899999984 6999999999999999999999999 Q ss_pred HHHHHHhccchhhhccccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc--cceeeecchhhhhcCHHHHH Q lcl|Aclame:pro 285 EIVCSVFRVPAYKIGVGQP--PSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGE--NESTEFDVTTLLRMDSERRM 360 (454) Q Consensus 285 ~~Ia~~fgvp~~~lg~~~~--~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~--~~~~~f~~~~l~~~d~~~~~ 360 (454) ++||++|||||.+||..+. .|++|+|++...|+++||.|++++|+++||++|++.. +++++|+.+.+++.|.+ T Consensus 303 ~eIa~afgVPp~~lG~~~~~~~n~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~~~~~i~f~~~~ll~~D~~--- 379 (540) T protein:vir:41 303 HDIAAAHMIDPYRLGITDVGPLGGNFAEVARRTYYESVVRPQQEIVSSVLTDFIQLKLDPGARFVFNEEILMESEFV--- 379 (540) T ss_pred HHHHHHhCCCHHHcCcccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCceEEEecchhhcchHHH--- Confidence 9999999999999998754 4688999999999999999999999999999998753 45778888899887754 Q ss_pred HHHHHHHhCCCcCHHHHHHHhcCCCCCCccc-ccccccccccccccccccccc-CCCccCcccCC----CCC-----Ccc Q lcl|Aclame:pro 361 KTLGDAVKNTLLTPNEARKRENLPPLAGGDA-LYLQQQNYSLEALSRRDARED-PFASSGKTASV----PQA-----VAA 429 (454) Q Consensus 361 ~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~-----~~~ 429 (454) +.+.+++++|++|+||+|+.+ +++|+++. ++.|.++...+........+. ..+...+.... .+. ... T Consensus 380 ~~~~~lv~~G~lT~NE~Re~L--~g~e~gdd~~l~p~n~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 457 (540) T protein:vir:41 380 HNYALLVQCGVLTPSEVREKL--FGLDGGPDMFMVPSSIGKSAMKRQKRNYEKNQINEIKRTYAKYKPRIQEIISSESPL 457 (540) T ss_pred HHHHHHHhCCCCCHHHHHHHh--CcCcCCCcccccccccccccccccccccCCCCccccccccchhcccccCcccccccc Confidence 446678999999999999854 33344444 444544433222111111111 11111111110 010 001 Q ss_pred cCcccccccccc----cHHH--HHHHHHhcC Q lcl|Aclame:pro 430 SDGNKAITETEH----DAVK--AMFRGILKK 454 (454) Q Consensus 430 ~d~~~~~~~~~~----~~~~--a~~~~~~~~ 454 (454) ++.+++..+... ++.+ ..+ ..|.+ T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 487 (540) T protein:vir:41 458 EDKKKKIDEVLSDFRAEAYENGKKM-LSIAG 487 (540) T ss_pred ccccccccccccccCCccccchhHH-HHHhh Confidence 111111111111 1111 111 12222 No 74 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=100.00 E-value=1.9e-75 Score=430.29 Aligned_cols=404 Identities=15% Similarity=0.124 Sum_probs=297.1 Q ss_pred cHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc---ccceehhhh-HHHHhhhhccccC--------CHHHHHHHHHH Q lcl|Aclame:pro 45 DPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ---GIRRETRRG-DIARLCRRPNAQQ--------NRIQFFELWLN 112 (454) Q Consensus 45 ~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~---~~~~~~~~~-~~~~l~~~pn~~~--------~~~~f~~~~~~ 112 (454) -.+.+-.+++|++||++||++||++|++++...+. ++.....++ ...++..+||+.| ++.+||+.++. T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~~~ 80 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTAWT 80 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHHHH Confidence 22334458999999999999999999999865432 111122222 2334556788754 67789999999 Q ss_pred HHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCce-------ee------------------EEeccccccccc Q lcl|Aclame:pro 113 AKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEV-------FY------------------RITPDRNCGITE 167 (454) Q Consensus 113 ~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~-------~~------------------~~~~~~~~~~~~ 167 (454) +++++||+|++++|+.+|.+++|+||+|++|++..+..+.. .| .+........+. T Consensus 81 ~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (467) T protein:vir:31 81 DYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKRMDERGFVQLLEEKEKYFGVAGDRYQTNGNGDLDPVFVDADDGSTGT 160 (467) T ss_pred HHHhcCCeEEEEEECCCCcEEEEEEeCCceeEeeeecceeEeecCCceeeEEeccccceeecccceeeeeeeeccccccc Confidence 99999999999999999999999999999999987754321 11 111111223455 Q ss_pred eeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecC-ccCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 168 AVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIP-GSITEENAKKLKSNWDSG 246 (454) Q Consensus 168 ~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~-~~~s~e~~~~~~~~~~~~ 246 (454) .+.+++++|||++.+++.++++|+||+.++...|....++.++++++|+||++|+++|.++ ..+++++.+++++.|++. T Consensus 161 ~~~~~~~diih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~~~ 240 (467) T protein:vir:31 161 SVSNPANELIFKRNHSPLYPHYGAPDIIPAVKTIRGDSAAQDYNIDFFENDGVPRIAIIVKGAELTEKGREEMRNLIEDN 240 (467) T ss_pred eeEeccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHhh Confidence 6789999999999998899999999999999999999999999999999999999999986 468999999999999887 Q ss_pred hcC------------cccCCceecCCCceeeecc--------ccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccc Q lcl|Aclame:pro 247 YTG------------ENAGKTAILSNGAKYNPTT--------FSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS 306 (454) Q Consensus 247 ~~g------------~n~g~~~vl~~g~~~~~l~--------~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~ 306 (454) +++ .|+++++++++|.++++++ ++++|+||++++++++++||++|||||.+||..+++++ T Consensus 241 ~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~lG~~~~~~~ 320 (467) T protein:vir:31 241 NEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDVPPVIAGVVESGAF 320 (467) T ss_pred hcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHHHHHHHHHHHHhCCCHHHcccCCCCCc Confidence 642 5788899998876665543 35689999999999999999999999999998877766 Q ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc----cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh Q lcl|Aclame:pro 307 -DNVEALEQQYYSQCLQTLIESIELLLDEALETGE----NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRE 381 (454) Q Consensus 307 -~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~----~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~ 381 (454) +|+|++...|++.||.|+++.|+++||++|++.. +++++|+++.+++.|.+++++++..++++|++|+||+|+++ T Consensus 321 ~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~~~~~i~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~ 400 (467) T protein:vir:31 321 STDAEEQRKEFAEETIQPKQHDFGELLYELVHKQGLDAPDWTIEFELAKPDTKLQDVEIASQRVQAMQGLLTVNELRDEF 400 (467) T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceEEEecchhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh Confidence 6899999999999999999999999999998753 45789999999999999999999999999999999999999 Q ss_pred cCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccccccccccHHHHHHHHH Q lcl|Aclame:pro 382 NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDAVKAMFRGI 451 (454) Q Consensus 382 g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a~~~~~ 451 (454) |+||+++++. .+...... .......+....+.......+++.++..|..++..++++..+....... T Consensus 401 Gl~pi~d~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (467) T protein:vir:31 401 GFEPFPEEHV--YGGETLVA-EVTGGSGPGGGIGDQIEQLVEDRADEIIDSYQADLETEQLIEIGANADS 467 (467) T ss_pred CCCCCCcccc--cCCccccc-ccccccCCCCcccCcCCCCCCCcccchHhhhhhccccchhhhhccccCC Confidence 9999975432 22111110 0000011111111111111111111111111222222211110000000 No 75 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=100.00 E-value=7e-75 Score=427.14 Aligned_cols=376 Identities=17% Similarity=0.247 Sum_probs=301.1 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +.||+|+.++..... .. .+......+...+.++..++.+.++++++|++||++||+++|++||++++... T Consensus 1 Mg~f~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~~~~~~~~~~--- 70 (382) T protein:vir:48 1 MPIFNLATESPPDNQ----GG---FFDVVDSDFLASLKGNEWVSAETALRNSDLFSIINQLSNDLATVKLITSRKKL--- 70 (382) T ss_pred CccccccccCCcccc----cc---cccchhhhccccccCCcccchHhhhccHHHHHHHHHHHHhhccCceeeecchh--- Confidence 777776655433221 11 11222233455667788899999999999999999999999999999986432 Q ss_pred ceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCce-eeEEecc Q lcl|Aclame:pro 82 RRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEV-FYRITPD 160 (454) Q Consensus 82 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~-~~~~~~~ 160 (454) ..|+.+||++||+.+||+.++.+|+++||||++++|+.+|++++|+||+|++|++..+.++.. .|.+... T Consensus 71 ---------~~L~~~PN~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~~~l~~i~~~~v~v~~~~~~~~~~y~~~~~ 141 (382) T protein:vir:48 71 ---------QGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNITFD 141 (382) T ss_pred ---------hhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCCeEEEEEEec Confidence 357899999999999999999999999999999999999999999999999999998877654 4444433 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~ 240 (454) +...+..+.++++||||++++++.+.++|+||+.++..+|....++.+++.++|+||+.|+++|++++..++++.++++ T Consensus 142 -~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~e~~~~~~ 220 (382) T protein:vir:48 142 -DPRIPPKQHVPQNDVLHFRLLSVDGGMTSVSPLMALSRELDIQKASGNLTINSLKNALNANGILKIKGGGLLDFKTKLS 220 (382) T ss_pred -CccccceeEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHHHHHH Confidence 2334456789999999999888878899999999999999999999999999999999999999999999999999998 Q ss_pred HHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQC 320 (454) Q Consensus 241 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~ 320 (454) +.|.+.. .|+|+++|+++|++|++++++++|+||+|.+++.+++||++|||||.+||+.++. ++.+++.+.|++.| T Consensus 221 ~~~~~~~--~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~~~~--~~~~~~~~~~~~~~ 296 (382) T protein:vir:48 221 RSRQAMK--QMQGGPLVLDDLEDFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPDNVVGGQGDQ--QSSLEMSSDLYSKA 296 (382) T ss_pred HHHHhhc--cCCCCeeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCc--ccHHHHHHHHHHHH Confidence 8887654 5789999999999999999999999999999999999999999999999986553 46788889999999 Q ss_pred HHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCC-----CCccccccc Q lcl|Aclame:pro 321 LQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPL-----AGGDALYLQ 395 (454) Q Consensus 321 i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~-----~~~d~~~~~ 395 (454) |.|+++.|+++|+++|++..+. +....+..+.......+.+++++|++|+||+|+.++..++ ++++.... T Consensus 297 l~p~~~~i~~~l~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~g~~t~~e~r~~l~~~g~~~~~~~~~~~~~~- 371 (382) T protein:vir:48 297 VSRYLRPFLSELSQKLSCDVDA----DIFPAVDPTGSNYISRINSLVKTGTLAQNQGLYILQQAEILPKELPNGENPNS- 371 (382) T ss_pred HHHHHHHHHHHHHHHhcChhhh----hhhhhhccchhHHHHHHHHHhhcCccCHHHHHHHHhhCCCCCcchhhhhcCCC- Confidence 9999999999999999876543 3333334455566677889999999999999998753221 22111100 Q ss_pred cccccccccccccccccCCCccCcccCCCCCCcc Q lcl|Aclame:pro 396 QQNYSLEALSRRDAREDPFASSGKTASVPQAVAA 429 (454) Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (454) +++ +++ .++++ T Consensus 372 ----~~~---------------GGd----~~~~~ 382 (382) T protein:vir:48 372 ----TLK---------------GGE----EDGQD 382 (382) T ss_pred ----CCC---------------CCC----CCCCC Confidence 000 000 00000 No 76 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=100.00 E-value=8.9e-75 Score=426.56 Aligned_cols=367 Identities=15% Similarity=0.117 Sum_probs=288.3 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +++|++.+++.... .+.. . +.....++.+.|+++++|++||++||+++|++|+++++.. T Consensus 1 Mg~f~~l~~~~~~~------~~~~--~---------~~~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~~p~~~~~~~---- 59 (376) T protein:vir:78 1 MGFFSELFKRNKEI------EWMW--D---------LDFLEDKTTKVYLKKMALNTCVKHIARTIAKSDFRLKNGE---- 59 (376) T ss_pred CchhhhhhccCCcc------cccc--c---------hhhccccchhhhhhhHHHHHHHHHHHHhhcccceeecccc---- Confidence 55555544432211 0000 0 0112346778899999999999999999999999998532 Q ss_pred ceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEeccc Q lcl|Aclame:pro 82 RRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPDR 161 (454) Q Consensus 82 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~ 161 (454) ....++.+.+|+.+||++||+++||+.++.++++.||+|+++.|+..|.+.+++|+.+..+...... .+... T Consensus 60 -~~~~~~l~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~- 131 (376) T protein:vir:78 60 -TSVRDKLYYKLNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDTDDFLIADSYVRKEFAFFPDVFE------GVTVK- 131 (376) T ss_pred -ccccchHHHHHhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeCCCeeeccceeecccceeeeeee------eeeee- Confidence 2345667777888999999999999999999999999999999999999999999998876543321 11111 Q ss_pred cccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHH Q lcl|Aclame:pro 162 NCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKS 241 (454) Q Consensus 162 ~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~ 241 (454) ..+....+++++|||++++......++.+++..+...+... ....++.++.++.+++..+..+++++.+++++ T Consensus 132 --~~~~~~~~~~~evih~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 204 (376) T protein:vir:78 132 --DYRYNRNFSMDDVIFLEYGNERLSAFTDGMFEDYGELFGKM-----IRAQMRNFQIRGAVNFKMAGVADKDKQTKLQE 204 (376) T ss_pred --cceeeeeeccccEEEeccCCCCchhhhhHHHHHHHHHHHHH-----HHHHHhcCCCceeEEEccCCCCCHHHHHHHHH Confidence 11223568999999999776543333333333333222211 12223445556666676777889999999999 Q ss_pred HHHHHhcCc--ccCCceecCCCceeeeccccchhh-----HHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH Q lcl|Aclame:pro 242 NWDSGYTGE--NAGKTAILSNGAKYNPTTFSPVDS-----QTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ 314 (454) Q Consensus 242 ~~~~~~~g~--n~g~~~vl~~g~~~~~l~~~~~d~-----~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~ 314 (454) .|++.++|. +.++++++++|++|+++++++.|+ ||+|.+++++++||++|||||.+||+ +++|+|++.. T Consensus 205 ~~~~~~~g~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVPp~~l~~----~~s~~e~~~~ 280 (376) T protein:vir:78 205 YIDKVYASFNNNEIAIVPQLEGFNYEEFGTTSVNNSQSFDEVKKLRKEMIDYVASILGIPSSLLHG----DMADLSNNMK 280 (376) T ss_pred HHHHHhccccccCcceEEcCCCceEEeeccCccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhCC----CCCCHHHHHH Confidence 999999873 455577899999999999988664 99999999999999999999999973 6889999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCc--ccc Q lcl|Aclame:pro 315 QYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGG--DAL 392 (454) Q Consensus 315 ~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~--d~~ 392 (454) .|+++||.|++.+||++||++|+++.++.++|+++.+++.|.+++++++.+++++|++|+||+|+++|+||+|+| |.+ T Consensus 281 ~f~~~~l~P~~~~ie~~l~~kll~~~~~~~~~~~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~lg~~p~~~g~~d~~ 360 (376) T protein:vir:78 281 AYMEYCIDPLTKKLEDELNAKLFTFSEFLAGEHIKIIHKKDIIENAEAVDKLVASGSFNRNEVRELLGAERVDNPELDKY 360 (376) T ss_pred HHHHHHHHHHHHHHHHHHHhhhCCcccceecccchhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCcee Confidence 999999999999999999999999988889999999999999999999999999999999999999999999887 899 Q ss_pred cccccccccccccccc Q lcl|Aclame:pro 393 YLQQQNYSLEALSRRD 408 (454) Q Consensus 393 ~~~~~~~~~~~~~~~~ 408 (454) ++++|+++++..++.. T Consensus 361 ~~~~n~~~~~~~~e~g 376 (376) T protein:vir:78 361 LITKNYQSADEGGEDG 376 (376) T ss_pred eeccCceehhccccCC Confidence 9999999987543322 No 77 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=100.00 E-value=7e-74 Score=421.66 Aligned_cols=431 Identities=17% Similarity=0.146 Sum_probs=297.7 Q ss_pred Ccchhhhhccc--c----ccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEE Q lcl|Aclame:pro 1 MWNLLRRTRKN--Q----KSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLM 74 (454) Q Consensus 1 m~n~f~r~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~ 74 (454) |||........ + ..+.............++..++ ......+.+..+++|++||++||++||++||+++ T Consensus 1 ~~~~~~~i~s~~~~~~i~~~~~~s~~~~~~~~~~~~~pp~------~~~~la~l~~~n~~v~scI~~ia~~IA~l~~~~~ 74 (542) T protein:vir:41 1 MFNYHLSIRSLEKYKAIKREEVESQALGETRFEEYVEPKV------NPLVLLSLLQVNPYHASACSIKANDIIRTGYILE 74 (542) T ss_pred CccccccccccccchhhhhccccccccccccCCccccCCC------CHHHHHHHHhhcHHHHHHHHHHHHHHhhCceeee Confidence 99943221111 1 1111111100001111111110 0111124455689999999999999999999996 Q ss_pred eccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCcee Q lcl|Aclame:pro 75 QTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVF 154 (454) Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~ 154 (454) .... +. ++...||+++++.+||+.++.+++++||||++++|+.+|++.+|+||++++|++..+.++... T Consensus 75 ~~~~---------~~--l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~~L~~l~~~~v~v~~d~~~~~~ 143 (542) T protein:vir:41 75 GDDE---------GV--VDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPIRFEYIPSHTIRVHKDGSRYRQ 143 (542) T ss_pred cccc---------hh--hhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCcceEEEEcCCeeEe Confidence 4222 11 223459999999999999999999999999999999999999999999999999987654322 Q ss_pred eE-------Eecccc------ccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCc Q lcl|Aclame:pro 155 YR-------ITPDRN------CGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRP 221 (454) Q Consensus 155 ~~-------~~~~~~------~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p 221 (454) +. +..+.. ..+.....+++++|||++..++.+++||+||+.++...|....++.+++.++|+||++| T Consensus 144 ~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~eIiHir~~~~~~~~~Glspi~~~~~~i~~~~~~~~~~~~~f~Ng~~p 223 (542) T protein:vir:41 144 TWDGVNITHFKDYRYEGEINPETGEDQDSVGANELVFIHIPSPVCSYYGVPRYVSAAPAILAMQKIDEYNYAFFDNYTIP 223 (542) T ss_pred eecCCcceeEEeecccccccccccccccccCcccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCc Confidence 11 110000 01122346889999999999889999999999999999999999999999999999999 Q ss_pred ceeEecCc----------cCCHHHHHHHHHHHHHHhcC--cccCCceecC------CCceeeeccccchhhHHHHHHHHH Q lcl|Aclame:pro 222 SGVIEIPG----------SITEENAKKLKSNWDSGYTG--ENAGKTAILS------NGAKYNPTTFSPVDSQTVEQLKMT 283 (454) Q Consensus 222 ~~~l~~~~----------~~s~e~~~~~~~~~~~~~~g--~n~g~~~vl~------~g~~~~~l~~~~~d~~~~e~~~~~ 283 (454) +++|+++. ..++++.+++++.|++.+.| .|+|+++||+ +|+++++++++++|++|+++++++ T Consensus 224 ~gIL~~~~~l~de~~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~ 303 (542) T protein:vir:41 224 SYVITVTGEFEDELEEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEK 303 (542) T ss_pred cEEEEeCCccccccccccccCHHHHHHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHH Confidence 99998864 34788999999999999876 5788999984 799999999999999999999999 Q ss_pred HHHHHHHhccchhhhcccccc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--ceeeecchhhhhcCHHHH Q lcl|Aclame:pro 284 AEIVCSVFRVPAYKIGVGQPP--SSDNVEALEQQYYSQCLQTLIESIELLLDEALETGEN--ESTEFDVTTLLRMDSERR 359 (454) Q Consensus 284 ~~~Ia~~fgvp~~~lg~~~~~--~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~--~~~~f~~~~l~~~d~~~~ 359 (454) +++||++|||||.+||..+.+ +++|+|++...|+++||.|+++.|+++||++|++..+ .+++|+.+.+++.|. T Consensus 304 ~~~Ia~afgVPp~~lG~~~~~t~n~sn~Eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~~~~~~~f~~~~ll~~d~--- 380 (542) T protein:vir:41 304 KYDIAAAHMIDPYRLGIADTGPLGGNFAEVTRRTYYESVVRPQQNIISSILTDFFQVKFNPKTRFKFNDETLLESDS--- 380 (542) T ss_pred HHHHHHHhCCCHHHhCcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEecchhhcchHH--- Confidence 999999999999999987665 5589999999999999999999999999999987644 467788888888764 Q ss_pred HHHHHHHHhCCCcCHHHHHHHh-cCCCCCCccccccccccccccccccccccccCC--CccCcccCCCC---CCcccCcc Q lcl|Aclame:pro 360 MKTLGDAVKNTLLTPNEARKRE-NLPPLAGGDALYLQQQNYSLEALSRRDAREDPF--ASSGKTASVPQ---AVAASDGN 433 (454) Q Consensus 360 ~~~~~~~~~~g~~T~NE~R~~~-g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~d~~ 433 (454) .+.+..++++|++|+||+|+.+ |++ +++..++.............+...... ...++...... ++..++.. T Consensus 381 ~~~~~~~v~~GilT~NE~Re~L~g~~---pgdd~~l~p~~~~~~~~~~~~~n~~~~~~~~~~k~~~k~~~~~~~~~~~~~ 457 (542) T protein:vir:41 381 VRNCALLVQSGVLTPAEARERLFGLD---GGPDIFMVPSKGAAKSVKRQERNYEKNQIREIRKIYAKYRPRFNEIISSKL 457 (542) T ss_pred HHHHHHHHhCCCCCHHHHHHhhCCCC---CCCccccccccccccccccCCcCCCCCchhhhhhcccccCccccccccccc Confidence 4456779999999999999753 554 455554433333332222211111110 00011000000 00000110 Q ss_pred cccc-cccccHHHHHHHHHhcC Q lcl|Aclame:pro 434 KAIT-ETEHDAVKAMFRGILKK 454 (454) Q Consensus 434 ~~~~-~~~~~~~~a~~~~~~~~ 454 (454) .+.+ +..++...+.+...=.+ T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~ 479 (542) T protein:vir:41 458 SAEEKKKKIDESLAEFRAEAYE 479 (542) T ss_pred cchhhcccccchhhhhHHhHHh Confidence 1111 11222233333333333 No 78 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=100.00 E-value=2e-74 Score=424.59 Aligned_cols=368 Identities=15% Similarity=0.183 Sum_probs=287.4 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +|++|+++.+.. .. .+ + .. ....++.+.|+++++|++||++||+++|++||++++.+.. T Consensus 3 ~f~~~f~~~~~~--~~-----~~-~-~~-----------~~~~~~~~~a~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~- 61 (385) T protein:vir:95 3 LFDSVFKRHSEL--SW-----MY-D-LE-----------FLQDKSKKAYLKQIALNTVVEMVARTISQSEFRVMKNNTK- 61 (385) T ss_pred hhhhhhccCccc--cc-----cc-c-hh-----------hhhccchhhhhhhHHHHHHHHHHHHHHcccceeeeecCcc- Confidence 555543322111 00 00 0 00 1123566789999999999999999999999999974432 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) ..++.+.+|+.+||++||+.+||+.++.+++++||||+++.+... .+..++++.+..+...... ++.+.. T Consensus 62 ----~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~- 131 (385) T protein:vir:95 62 ----EKGTLYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKNDEGH-FFVADDFEKEDELGLYSHR----FTNVLV- 131 (385) T ss_pred ----ccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEEecCCC-eeecccccccccccccccc----ceeeee- Confidence 245566667789999999999999999999999999998876654 3445555555555443222 111111 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCc--cCCHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPG--SITEENAKK 238 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~--~~s~e~~~~ 238 (454) ...+....+++++|||++++++.+..+|.||+..+...+....++.. + ++.|+++++++. .+++++.++ T Consensus 132 --~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~-----~--~~~~~g~l~~~~~~~~~~e~~~~ 202 (385) T protein:vir:95 132 --NDFEFKRVFTMDDVIYLKYNNQKLDAFSLGLFEDYGEIFGRMIDLQM-----L--NNQIRGILKVDATKFYNKEKQKE 202 (385) T ss_pred --cccceeeeeccccEEEecCCCCCcccccchHHHHHHHHHHHHHHHHH-----h--cCCCceEEEeCCccCCCHHHHHH Confidence 11233467899999999998887788999999999999877665432 2 234778887754 568999999 Q ss_pred HHHHHHHHhcCc--ccCCceecCCCceeeeccc------cchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHH Q lcl|Aclame:pro 239 LKSNWDSGYTGE--NAGKTAILSNGAKYNPTTF------SPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVE 310 (454) Q Consensus 239 ~~~~~~~~~~g~--n~g~~~vl~~g~~~~~l~~------~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e 310 (454) +++.|++.++|. +.++++++++|++++++++ +++|+||+|.+++++++||++|||||++|+ ++++|.| T Consensus 203 ~~~~~~~~~~g~~~~~~~i~~l~~g~~~~~l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~----~~~sn~e 278 (385) T protein:vir:95 203 LQAYIDTLFDAFQNNTIAVVPLTEGLAYEEHSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSLVL----GEMADLE 278 (385) T ss_pred HHHHHHHHhhhhhhcCCceEEcCCCceeEeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhc----CCCcCHH Confidence 999999999873 4556889999999999985 567999999999999999999999999996 4689999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccc---ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCC- Q lcl|Aclame:pro 311 ALEQQYYSQCLQTLIESIELLLDEALETGEN---ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPL- 386 (454) Q Consensus 311 ~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~---~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~- 386 (454) ++...|+++||.|++.+||++||++|+++.+ .+++||++.+++.|.+++++++.+++++|+||+||+|+++|+||+ T Consensus 279 ~~~~~~~~~~l~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~D~~~~~~~~~~~~~~g~lt~NE~R~~~g~~p~~ 358 (385) T protein:vir:95 279 KTIESYLQFCINPLLRKIEAELNSKFFYQDEYLNDDMHIKVVGIDKRDPLKLSEAIDKLVASGTFTRNQVRIMTGEEPAD 358 (385) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhhcccceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 9999999999999999999999999998744 378999999999999999999999999999999999999999998 Q ss_pred -CCcccccccccccccccccccccccc Q lcl|Aclame:pro 387 -AGGDALYLQQQNYSLEALSRRDARED 412 (454) Q Consensus 387 -~~~d~~~~~~~~~~~~~~~~~~~~~~ 412 (454) |+||.+++++|+++++....++..+. T Consensus 359 ~~~gd~~~~~~n~~~~~~~kgge~~~e 385 (385) T protein:vir:95 359 DPELDKFIITKNLQSADAFKGGESNEE 385 (385) T ss_pred CCCCceeeecccceecccccCCCCCCC Confidence 78999999999998865311111111 No 79 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=100.00 E-value=2.9e-73 Score=418.27 Aligned_cols=382 Identities=11% Similarity=0.030 Sum_probs=281.7 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +++||+.++....+..... .| . .+.....++.+.|+++++|++||++||+++|++||++++.++ T Consensus 3 ~~~~~~~~~~~~~~~~~~~--~~------~------~~~~~~~~~~~~~l~~~~v~~~v~~Ia~~ia~~p~~~~~~~~-- 66 (395) T protein:vir:40 3 FKSWVSGFFNEEQRTLNLT--DT------V------WCSIPSEKLKELSIKKWAIDSCANKIANTLSCAEVLTYEKGE-- 66 (395) T ss_pred hHHHHHhhhcccccccccc--cc------h------hhccccccchhhhhhhHHHHHHHHHHHHHHhhCceeeccCCc-- Confidence 5666665555433322211 11 1 011233466788999999999999999999999999986332 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) ...++.+.+|+.+||++||+.+||+.++.+|+++||||+++.++.. ++.+ +.......... ..|.... T Consensus 67 ---~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~~~~------~~~~-~~~~~~~~~~~-~~~~~v~- 134 (395) T protein:vir:40 67 ---EVRKKNWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQDEYI------YVAD-SFTKNDKSLYE-NTYTEVT- 134 (395) T ss_pred ---cccchHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEecCce------eecC-Ccccccccccc-ceeeeee- Confidence 2346677788889999999999999999999999999999876542 2222 22221111111 1111111 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~ 240 (454) ....+....+++++|||+++++.....++.+.+..+...+.... ....+.++..+.+++..+...++++.++++ T Consensus 135 -~~~~~~~~~~~~~evih~r~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 208 (395) T protein:vir:40 135 -LKDLTLKKEFKESEVLHLTLNNESIKSIIDGFYLLYGDLLTAAV-----NKYKKLNSRKIIVKLKAMFGQTPEAEEKLR 208 (395) T ss_pred -ecCceeeeeeccccEEEeecCCCCccccchhHHHHHHHHHHHHH-----HHHHhcCCCCceEEEecccCCCHHHHHHHH Confidence 11122345689999999997665444444444444444333222 233445666677777778888999999999 Q ss_pred HHHHHHhcC--cccCCceecCCCceeeeccccchhhHHHHHHHHHH---HHHHHHhccchhhhcccccccccCHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTG--ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTA---EIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ 315 (454) Q Consensus 241 ~~~~~~~~g--~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~---~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~ 315 (454) +.|++.+++ .++++++++++|++|++++++++|+|++|.+++.. ++||++|||||.+|| ++++|.+++... T Consensus 209 ~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l~----~~~sn~e~~~~~ 284 (395) T protein:vir:40 209 LMLSERMKKFLAEGDSALPVEDGMEIDELAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLAK----GDTVGLSEQVNS 284 (395) T ss_pred HHHHHHHHHhhccCCceeecCCCceEEeccCChhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CCCcCHHHHHHH Confidence 999999876 57888999999999999999999999999998874 799999999999997 368899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcc----cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCC--c Q lcl|Aclame:pro 316 YYSQCLQTLIESIELLLDEALETGE----NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAG--G 389 (454) Q Consensus 316 ~~~~~i~P~~~~ie~~l~~~l~~~~----~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--~ 389 (454) |+++||.|++++||++||++|++.. +.+++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+++ | T Consensus 285 f~~~~L~P~~~~ie~~l~~kLl~~~~~~~g~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~~~~g 364 (395) T protein:vir:40 285 FLMFSINPIAEMFTDEGNRKFYGRDSVLERTYMKLDTTRIKVQDIQEIASSMDVLFHIGVNTIDDNLRMIGREPVMSPET 364 (395) T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhcCCceEEEechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCC Confidence 9999999999999999999999864 468999999999999999999999999999999999999999999955 9 Q ss_pred cccccccccccccccccccccccCCCccCcccCCCCCCcccCc Q lcl|Aclame:pro 390 DALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDG 432 (454) Q Consensus 390 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 432 (454) |.++++.|+++++...... .+.+ .+++..+. T Consensus 365 D~~~~~~n~~~~~~~~~~~------kgge------~~~~~~~~ 395 (395) T protein:vir:40 365 QERFVTKNYAPLGENEEDL------KGGD------INENKGDS 395 (395) T ss_pred ceeeecccccccccccccc------CCCC------CCCCcCCC Confidence 9999999999886543211 0000 00000000 No 80 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=100.00 E-value=6.2e-73 Score=416.44 Aligned_cols=377 Identities=14% Similarity=0.084 Sum_probs=276.9 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +||+|+++..... ....+... -..++.+.|+++++|++||++||+++|++||++++.+++ T Consensus 3 l~d~~~~~~~~~~-----~~~~~~~~--------------~~~~~~~~~l~~~~v~~~i~~Ia~~ia~lp~~v~~~~~~- 62 (395) T protein:vir:96 3 ILDFFSFKKSGTL-----SDDDSGST--------------TSEKLTNVVLKEDALYKCVNYLARIISKSTFRIKAPEKL- 62 (395) T ss_pred chhhhcCCCCccc-----cccccccc--------------hhhhcchhhhhhHHHHHHHHHHHHhhccceeEEEeCCcc- Confidence 8898866432111 00111111 112456779999999999999999999999999975332 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) ....++...+|+.+||++||+.+||+.++.+++++||+|++++|+..+.+...++... .. .+...+.+... T Consensus 63 --~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~v~~~ 133 (395) T protein:vir:96 63 --TENQKDWLYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIPGKGIYVADAFTQDK-----KL--SGNKFKVSRVQ 133 (395) T ss_pred --ccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEcCCceecCCcccccc-----cc--ccceeeeeeec Confidence 3344556667778999999999999999999999999999999876543332222111 11 11111111111 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHH------HHHHHHHHHHhccCCcceeEecCccCCHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGH------HIQENSTSFFRNGGRPSGVIEIPGSITEE 234 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~------~~~~~~~~~~~ng~~p~~~l~~~~~~s~e 234 (454) .......+++++|||+|++.+....++.+++......+.... .+.++..+++.+++.+.+++..+....++ T Consensus 134 ---~~~~~~~~~~~dvih~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (395) T protein:vir:96 134 ---GQTYEKIFTFDQVIYLKNDNSDLMLKVESLWEEYGELLGHVINNQKIANQIRFTMTPPKDKVRERAQENSDGGRQPK 210 (395) T ss_pred ---cceeeeEeccCceEEecccCCccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeccCchhhHH Confidence 112245689999999998877666666665555444443333 34467888999999999999887766655 Q ss_pred HHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHH------HHHHHHHhccchhhhcccccccccC Q lcl|Aclame:pro 235 NAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMT------AEIVCSVFRVPAYKIGVGQPPSSDN 308 (454) Q Consensus 235 ~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~------~~~Ia~~fgvp~~~lg~~~~~~~~n 308 (454) ..+++.+++..... .+.++++++++|++++++++++.|+|+++.+++. .++||++|||||++|| ++++| T Consensus 211 ~~~~~~~~~~~~~~-~~~~~v~~l~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~~l~----~~~sn 285 (395) T protein:vir:96 211 SDKDFFKRTIEKIR-TESVVGIPVTANTNYEEYGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH----GDIAD 285 (395) T ss_pred HHHHHHHHHHHHhh-cCCcceEEccCCceeEecccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CCCcc Confidence 55444444433332 2345678899999999999999999999888765 5899999999999997 46889 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCC Q lcl|Aclame:pro 309 VEALEQQYYSQCLQTLIESIELLLDEALETGEN--ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPL 386 (454) Q Consensus 309 ~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~--~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~ 386 (454) .|++.++|+++||.|++.+||++|+++|+++.. ..++|+++.+++.|.+++++.+.+++++|++|+||+|+++|+||+ T Consensus 286 ~e~~~~~f~~~~L~P~~~~ie~~l~~~Ll~~~e~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi 365 (395) T protein:vir:96 286 NQKNYELLLEGPIESLITNIVDGLEYAIFDKSETLEGSFIKVTGLKNYDLFSISSQADKLISSGFVFIDEVREEIGLPEL 365 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhcCceeEeecchhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Confidence 999999999999999999999999999998643 346789999999999999999999999999999999999999999 Q ss_pred CC--ccccccccccccccccccccccccCC Q lcl|Aclame:pro 387 AG--GDALYLQQQNYSLEALSRRDAREDPF 414 (454) Q Consensus 387 ~~--~d~~~~~~~~~~~~~~~~~~~~~~~~ 414 (454) |+ ||.+++++|+++++..+.....+++. T Consensus 366 ~~~~gD~~~~~~N~~~~~~~gge~~~~~~~ 395 (395) T protein:vir:96 366 PDGLGKVLYMTKNYESVLERGGEVDEEVET 395 (395) T ss_pred CCCCCceeeecccceechhccCCCCCCCCC Confidence 77 99999999999886421111111000 No 81 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=100.00 E-value=1.9e-72 Score=413.73 Aligned_cols=358 Identities=11% Similarity=0.140 Sum_probs=270.3 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +++|++...-.+........ .+.. + .....++++++|++||++||++||++|+++++..+.+. T Consensus 1 Mg~f~~~~~~~~~~~~~~~~---~~~~---------~-----~~~~~~~~~~~v~~~v~~IA~~iA~lp~~~~~~~~~~~ 63 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNNDTQ---RVTA---------W-----QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) T ss_pred CCccccchhcccccccCCcc---eeee---------e-----ccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccCc Confidence 66665543211110000000 0000 0 11234677889999999999999999999887665543 Q ss_pred c-----eehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC-CCceeEEEEecCcceEEEECCCCceee Q lcl|Aclame:pro 82 R-----RETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA-RGQIKELRILDWNRVEPLVADDGEVFY 155 (454) Q Consensus 82 ~-----~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~-~G~~~~l~~l~~~~~~~~~~~~g~~~~ 155 (454) . ....|+++.+|+.+||++||+++||+.++.+++++||+|++++++. .|++..++|.. T Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~~~~l~p~~---------------- 127 (378) T protein:vir:94 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD---------------- 127 (378) T ss_pred ccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCceEEEEEecC---------------- Confidence 2 2233455555666899999999999999999999999999987655 46666555421 Q ss_pred EEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHH Q lcl|Aclame:pro 156 RITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEEN 235 (454) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~ 235 (454) ....+++++|||++. +.++..|+||+..+...+... +++ +.++++|+++..+++++ T Consensus 128 -----------~~~~~~~~diiH~~~--~~~~~~g~s~l~~~~~~i~~~----------~~~-~~~~gil~~~~~l~~~~ 183 (378) T protein:vir:94 128 -----------DKKEYKPEELVRLTS--PFYINEDTSILDNALASIQTK----------LEQ-GKLRGLLKINAFLDIDN 183 (378) T ss_pred -----------CeeEeeeeeeEEecC--cCCccchhHHHHHHHHHHHHH----------Hhc-ccccceeeeCCcCCHHH Confidence 124578899999994 457778999998888776432 334 45889999999998887 Q ss_pred HHHHHHHHHHHh----cCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHH Q lcl|Aclame:pro 236 AKKLKSNWDSGY----TGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEA 311 (454) Q Consensus 236 ~~~~~~~~~~~~----~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~ 311 (454) .++++++|++.+ +|+++|++++|++|++|++++++++++++ +.+++++++||++|||||.+|+. ++.++ T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVP~~~l~~------~~se~ 256 (378) T protein:vir:94 184 TQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG------TASQE 256 (378) T ss_pred HHHHHHHHHHHHHHhhcccccccceecCCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcC------ChHHH Confidence 777777666554 56789999999999999999999999996 56789999999999999999953 24488 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccc----------ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh Q lcl|Aclame:pro 312 LEQQYYSQCLQTLIESIELLLDEALETGEN----------ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRE 381 (454) Q Consensus 312 ~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~----------~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~ 381 (454) +..+|+++||.|++++||++||++|+++.. ..++|+++.+++.|.+++++.+.+++++|+||+||+|+++ T Consensus 257 ~~~~f~~~tL~P~~~~ie~~l~~~Ll~~~er~~g~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~ 336 (378) T protein:vir:94 257 QQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKM 336 (378) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh Confidence 999999999999999999999999998632 1367999999999999999999999999999999999999 Q ss_pred cCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccc Q lcl|Aclame:pro 382 NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNK 434 (454) Q Consensus 382 g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 434 (454) |+||+||||.+++++|+++++.........+...+.+. ++ ++ T Consensus 337 gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e----------~~-n~ 378 (378) T protein:vir:94 337 GEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDE----------TN-NQ 378 (378) T ss_pred CCCCCCCCCeeeecccccccccchhhcCCcCCCCCCCC----------CC-CC Confidence 99999999999999999999766443322111111110 00 01 No 82 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=100.00 E-value=5.2e-72 Score=411.38 Aligned_cols=358 Identities=12% Similarity=0.137 Sum_probs=270.5 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +++|++..+-...... ....... .+ .....+++.++|++||++||++||++||++++..+.+. T Consensus 1 Mg~f~~~~~~~~~~~~---~~~~~~~---------~~-----~~~~~~~~~~~v~~~i~~Ia~~iA~l~~~~~~~~~~~~ 63 (378) T protein:vir:16 1 MNLFGKVVSFSRGKLN---NDTQRVT---------AW-----QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) T ss_pred Cccchhhhhhhccccc---CCcceee---------ec-----ccchhhHHHHHHHHHHHHHHhhhhhCceeEEEEccccc Confidence 6767654321111000 0000000 00 12234678889999999999999999999998766554 Q ss_pred ce-----ehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC-CceeEEEEecCcceEEEECCCCceee Q lcl|Aclame:pro 82 RR-----ETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR-GQIKELRILDWNRVEPLVADDGEVFY 155 (454) Q Consensus 82 ~~-----~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~-G~~~~l~~l~~~~~~~~~~~~g~~~~ 155 (454) .. ...++++++|+.+||++||+++||+.++.+++++||+|+++++++. |++..++|.. T Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~g~~~~l~~~~---------------- 127 (378) T protein:vir:16 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLLFAD---------------- 127 (378) T ss_pred ccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEEecC---------------- Confidence 32 2235556666669999999999999999999999999999988764 5555444321 Q ss_pred EEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHH Q lcl|Aclame:pro 156 RITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEEN 235 (454) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~ 235 (454) ....|+++||||+|. +.++..|.|++..+...+. ..+.+ +.++++|+.+..+++++ T Consensus 128 -----------~~~~~~~~diih~r~--~~~~~~~~s~l~~~~~~i~----------~~~~~-~~~~g~l~~~~~l~~~~ 183 (378) T protein:vir:16 128 -----------DKKEYKPEELVRLTS--PFYINEDTSILDNALASIQ----------TKLEQ-GKLRGLLKINAFLDIDN 183 (378) T ss_pred -----------CeeEecccceEEecC--ccCccchhHHHHHHHHHHH----------HHHhc-CccceeeEeCCcCCHHH Confidence 124577899999994 4567788998887776653 23344 46889999999888887 Q ss_pred HHHHHHHHHHH----hcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHH Q lcl|Aclame:pro 236 AKKLKSNWDSG----YTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEA 311 (454) Q Consensus 236 ~~~~~~~~~~~----~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~ 311 (454) .++.+++|++. .+|+++|++++|++|++|++++++++++++. .+++++++||++|||||.+|+. +++|+ T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~g------~~~e~ 256 (378) T protein:vir:16 184 TQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKD-EIDLIKSELLTGYFMNENILLG------TASQE 256 (378) T ss_pred HHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhhhHH-HHHHHHHHHHHHhCCCHHHhcC------CchHH Confidence 76666666655 4667899999999999999999999999974 5689999999999999999953 34589 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccc----------ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh Q lcl|Aclame:pro 312 LEQQYYSQCLQTLIESIELLLDEALETGEN----------ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRE 381 (454) Q Consensus 312 ~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~----------~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~ 381 (454) +..+|+.+||.|++++||++||++|+++.. ..++|+++.+++.|.+++++.+.+++++|++|+||+|+++ T Consensus 257 ~~~~f~~~tl~P~~~~ie~~l~~kLl~~~e~~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~ 336 (378) T protein:vir:16 257 QQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKM 336 (378) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh Confidence 999999999999999999999999998642 2377999999999999999999999999999999999999 Q ss_pred cCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccc Q lcl|Aclame:pro 382 NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNK 434 (454) Q Consensus 382 g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 434 (454) |+||+||||.+++++|+++++...+.........+.+. ++. + T Consensus 337 g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e----------~~n-e 378 (378) T protein:vir:16 337 GEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDE----------TNN-Q 378 (378) T ss_pred CCCCCCCCCeEeeccccccccchhhhcCccCCCCCCCC----------CCC-C Confidence 99999999999999999999766544322211111111 000 0 No 83 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=100.00 E-value=5.6e-72 Score=411.22 Aligned_cols=358 Identities=12% Similarity=0.143 Sum_probs=270.5 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) ++||++...-......... .... .+ .+...+++.++|++||++||++||++|+++++..+.+. T Consensus 1 Mg~f~~~~~f~~~~~~~~~---~~~~---------~~-----~~~~~~~~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~~~ 63 (378) T protein:vir:93 1 MNLFGKVVSFSRGKLNNDT---QRVT---------AW-----QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) T ss_pred CccchhhhhhhccccCCCc---ceee---------ec-----ccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEccccc Confidence 6666543221110000000 0000 01 12234678889999999999999999999998766554 Q ss_pred ce-----ehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC-CceeEEEEecCcceEEEECCCCceee Q lcl|Aclame:pro 82 RR-----ETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR-GQIKELRILDWNRVEPLVADDGEVFY 155 (454) Q Consensus 82 ~~-----~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~-G~~~~l~~l~~~~~~~~~~~~g~~~~ 155 (454) .. ...++++.+|+.+||++||+++||+.++.+++++||+|++++++.. |++..++|.. T Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g~~~~l~~~~---------------- 127 (378) T protein:vir:93 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLLFAD---------------- 127 (378) T ss_pred ccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEEecC---------------- Confidence 22 2234455566669999999999999999999999999999887654 5555544311 Q ss_pred EEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHH Q lcl|Aclame:pro 156 RITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEEN 235 (454) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~ 235 (454) ....|++++|||++. +.++..|.|++..+...+. .++.+| .++++|+.+..+++++ T Consensus 128 -----------~~~~~~~~diih~r~--~~~~~~~~s~l~~~~~~i~----------~~~~~~-~~~g~l~~~~~l~~~~ 183 (378) T protein:vir:93 128 -----------DKKEYKTEELVRLTS--PFYINEDTSILDNALASIQ----------TKLEQG-KLRGLLKINAFLDIDN 183 (378) T ss_pred -----------CeeEeccceeEEecC--ccccchhhHHHHHHHHHHH----------HHHhcC-cccceeeeCCcCCHHH Confidence 124578899999984 4567789999887766553 345555 5889999999988887 Q ss_pred HHHHHHHHHHH----hcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHH Q lcl|Aclame:pro 236 AKKLKSNWDSG----YTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEA 311 (454) Q Consensus 236 ~~~~~~~~~~~----~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~ 311 (454) .++++++|++. .+|++++++++|++|++|++++++++|+|+ +.+++++++||++|||||.+|++ ++.|+ T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~g------~~~e~ 256 (378) T protein:vir:93 184 TQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG------TATQE 256 (378) T ss_pred HHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcC------CcHHH Confidence 77777666654 456788999999999999999999999997 66789999999999999999953 34589 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccc----------ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh Q lcl|Aclame:pro 312 LEQQYYSQCLQTLIESIELLLDEALETGEN----------ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRE 381 (454) Q Consensus 312 ~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~----------~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~ 381 (454) +..+|+++||.|++++||++||++|+++.. ..++|+++.+++.|.+++++++.+++++|++|+||+|+++ T Consensus 257 ~~~~f~~~tl~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~ 336 (378) T protein:vir:93 257 QQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKM 336 (378) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh Confidence 999999999999999999999999998642 2478999999999999999999999999999999999999 Q ss_pred cCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccc Q lcl|Aclame:pro 382 NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNK 434 (454) Q Consensus 382 g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 434 (454) |+||+||||.+++++|+++++..+.....+....+. .++.++ T Consensus 337 gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~-----------~e~~n~ 378 (378) T protein:vir:93 337 GEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTST-----------DETNNQ 378 (378) T ss_pred CCCCCCCCCeeeeccccccccchhhhcCccCCCCCC-----------CCCCCC Confidence 999999999999999999997665543222111111 111111 No 84 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=100.00 E-value=2.9e-71 Score=407.27 Aligned_cols=378 Identities=13% Similarity=0.073 Sum_probs=281.4 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +||||.++.... .....+.. ....++.+.++++++|++||++||+++|++|+++++.++++ T Consensus 3 lf~~~~~~~~~~-----~~~~~~~~--------------~~~~~~~~~~~~~~~v~~~I~~ia~~iA~lp~~~~~~~~~~ 63 (395) T protein:vir:98 3 ILDFFSFKKSGT-----LSDDDSGS--------------TTSEKLTNVVLKEDALYKCVNYLARIISKSTFRLKTPEKLT 63 (395) T ss_pred chhhhcCCCccc-----ccccccch--------------hhhhhcchhhhhhHHHHHHHHHHHHHHhhCceeEEecCCcc Confidence 888885432210 00010100 11224556789999999999999999999999999754332 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEecc Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 160 (454) ...++...+|+.+||++||+++||+.++.+++++||||++++++..+. ++...+..... .+...+.+... T Consensus 64 ---~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~ 133 (395) T protein:vir:98 64 ---ENQKDWLYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPGKGIY------VADSFTQDKKI-SGSQFKVSRVQ 133 (395) T ss_pred ---cccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCCcee------cCCcccccccc-cCcccceeeec Confidence 335566777778999999999999999999999999999999875432 22233222211 11112222211 Q ss_pred ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHH--HHHHHHHHhccCCcceeEecCccC-CHHHHH Q lcl|Aclame:pro 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHI--QENSTSFFRNGGRPSGVIEIPGSI-TEENAK 237 (454) Q Consensus 161 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~--~~~~~~~~~ng~~p~~~l~~~~~~-s~e~~~ 237 (454) .......+++++|||+|+.++....++.+++......+...... .....+++.++..+.+++...... ++++.+ T Consensus 134 ---~~~~~~~~~~~evih~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (395) T protein:vir:98 134 ---GQTYEKTFTFDQVIYLKNDNSDLMSKVESLWEEYGELLGHVINNQKIANQIRFTMIPPKDKVRERAQENSDGGRQSK 210 (395) T ss_pred ---CceeeeEecCccEEEecCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCcHHHHH Confidence 11224678999999999877655566666666666655544443 344566788888888877666544 566777 Q ss_pred HHHHHHHHHhcCc--ccCCceecCCCceeeecccc------chhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCH Q lcl|Aclame:pro 238 KLKSNWDSGYTGE--NAGKTAILSNGAKYNPTTFS------PVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNV 309 (454) Q Consensus 238 ~~~~~~~~~~~g~--n~g~~~vl~~g~~~~~l~~~------~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~ 309 (454) +.++.+++.+++. +.+.++++++|++|++++++ +.++|+++.+++++++||++|||||++|| ++++|. T Consensus 211 ~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~----~~~sn~ 286 (395) T protein:vir:98 211 SDKDFFKRTVEKIRTESVVGIPVTANTNYEEYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH----GDIADN 286 (395) T ss_pred HHHHHHHHHHhhhhcCCcceeecCCCceeEecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CCcccH Confidence 8888888888763 44557789999999999854 56779999999999999999999999997 468899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCC Q lcl|Aclame:pro 310 EALEQQYYSQCLQTLIESIELLLDEALETGEN--ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLA 387 (454) Q Consensus 310 e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~--~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~ 387 (454) |++...|+++||.|++++||++||++|+++.. ...+|+++.+++.|.+++++++.+++++|++|+||+|+++|+||++ T Consensus 287 e~~~~~f~~~tl~P~~~~ie~~l~~kll~~~~~~~g~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~Pi~ 366 (395) T protein:vir:98 287 QKNYELLLEGPIESLITNIVDGLEYAIFDKSETLQGSFIKVTGLKNYDLFSISNQADKLISSGFVFIDEVREEIGLPELP 366 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCcceeeehhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 99999999999999999999999999998643 3567899999999999999999999999999999999999999997 Q ss_pred C--ccccccccccccccccccccccccCC Q lcl|Aclame:pro 388 G--GDALYLQQQNYSLEALSRRDAREDPF 414 (454) Q Consensus 388 ~--~d~~~~~~~~~~~~~~~~~~~~~~~~ 414 (454) + ||.+++++|+++++..+.....+++. T Consensus 367 ~~~gD~~~~~~n~~~~~~~gge~~~~~~~ 395 (395) T protein:vir:98 367 DGLGKVLYMTKNYESVLERGGEVDEEVET 395 (395) T ss_pred CCCCceeeecccceecccccCCCCCCCCC Confidence 7 99999999999986421111111110 No 85 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=100.00 E-value=2e-69 Score=397.23 Aligned_cols=445 Identities=12% Similarity=0.073 Sum_probs=293.3 Q ss_pred Ccchhhhhcc---ccc---------------cccc---------cCcccchhhhhhhhh----hc-cccccCCcccc--- Q lcl|Aclame:pro 1 MWNLLRRTRK---NQK---------------SGRD---------VREAGWTSLFQAVAE----PF-AGAWQQGVKAD--- 45 (454) Q Consensus 1 m~n~f~r~~~---~~~---------------~~~~---------~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~--- 45 (454) .|+..+-.++ -.+ .+.+ .+.+. ...+.-.+. .. ++......+++ T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~d~~-~~~~~r~g~~~~~~~~g~~~~~epp~d~~~ 88 (648) T protein:vir:79 10 FWSRISLMWRDEDDDKEPLVLEESMQLGEAPGAMPKGGGGGGSAKRDPK-MSLVKRIGLAIMDGGGGGRDFEEPEFDFNE 88 (648) T ss_pred hhhhhhhhccCccccccccccccccccCCCccccCCCCcccccccccch-hHHHHHhHHHHHhhcCCccccccCCcCHHH Confidence 2222111111 000 0000 00000 001111100 00 11111112233 Q ss_pred -HHHHHhhHHHHHHHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEE Q lcl|Aclame:pro 46 -PEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLK 124 (454) Q Consensus 46 -~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~ 124 (454) .+.+..+|+|++||++||+++|++||.++..++.. ........++.+||++++.++||+.++.+++++||+|+++ T Consensus 89 l~~l~~~np~V~~aI~iia~~ia~l~~~i~~~~~~~----~~~~~~~~ll~rPn~~~t~~~f~~~l~~~lll~GNAYvei 164 (648) T protein:vir:79 89 ITSAYNTEGYVRQAVDKYIEMMFKADWDFVSKNPNA----VEYIRMRFTLMAEATQIPTNQLFIEIAEDLVKYCNVVIAK 164 (648) T ss_pred HHHHHhcChHHHHHHHHHHHHHhhCcceEEecCCcc----chhhHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCeEEEE Confidence 24455799999999999999999999987644322 2233444567899999999999999999999999999999 Q ss_pred eeCCCCc---------------eeEEEEecCcceEEEECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCccc Q lcl|Aclame:pro 125 IRNARGQ---------------IKELRILDWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLI 189 (454) Q Consensus 125 ~r~~~G~---------------~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~ 189 (454) +|+.+|. ..++||++|.+|++..+.+|...++.+.. .+.+..+.|++++|||+++..+.+++| T Consensus 165 iRd~~G~~~~~l~~~~~~~~~~v~~l~pl~p~~v~v~~d~~g~~~~Y~y~~--~g~~~~~~~~~~dIIHik~~~~~d~~~ 242 (648) T protein:vir:79 165 SRAKDALPFQGMNVMGVGDSMPVAGYFPLNLASMKVKRDKFGMIKGWQQEQ--EGQDKPQKFKPEDIVHIYYKREKGRAF 242 (648) T ss_pred EecCCCccchhhhhhhhccccceeeeEeecCceeEEEEcCCCceeeeEEEe--cCCceeEEecCccEEEEccCCCCCCce Confidence 9998883 47899999999999999888655433221 233456789999999999988899999 Q ss_pred ccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCcc-CCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeecc Q lcl|Aclame:pro 190 GLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGS-ITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTT 268 (454) Q Consensus 190 G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~-~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~ 268 (454) |+||+.++..+|....++.++..++|.||++|+++|+++.+ ...++.+++++.|...+.+.+.++..+....+.+.+. T Consensus 243 GlSpi~~a~~aI~l~~aa~~~~~~fF~NGa~P~gil~~~~~~~~~e~~k~~~e~~~~~~~~~~i~gg~v~~~~~~i~~~- 321 (648) T protein:vir:79 243 GTPWLLPALDDIRALRQVEENVLRLVYRNLHPLWHVKVGLEQEGFGAEEGEVDLVRGEVENMDVEGGMVTTERVNISSI- 321 (648) T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCccchHHHHHHHHHHHHhcccccccccccccceeecccc- Confidence 99999999999999999999999999999999999998633 3556677777778777654332222222222222222 Q ss_pred ccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCc----- Q lcl|Aclame:pro 269 FSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDE----ALETG----- 339 (454) Q Consensus 269 ~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~----~l~~~----- 339 (454) .+++|+||++++++++++||++|||||.+||+.++++++|.+++...| ..++.|++..++..++. .++.+ T Consensus 322 ~s~~dlqfle~rk~~~~eIa~aFgVPP~lLG~~~~ss~stae~~~~~~-~~~i~~l~~~i~~~le~~~~~~ll~e~~l~~ 400 (648) T protein:vir:79 322 ASNQIIDAKEYLKHFEQRAFTVLGVSELMMGRGGTASRSTGDNLSSDF-KDRIKALQKVMATFINEFMVKEILMEGGFDP 400 (648) T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCHhHcccCCCccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhccc Confidence 256899999999999999999999999999999888999988877665 56788877666555443 33221 Q ss_pred ---ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccc-cccccccccccccccccccccCCC Q lcl|Aclame:pro 340 ---ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDA-LYLQQQNYSLEALSRRDAREDPFA 415 (454) Q Consensus 340 ---~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~ 415 (454) ..++++|+++++++.|.+++++.+.+++++|+||+||+|+++|+||+|+|+. .++..++.+.......+.....+. T Consensus 401 ~l~~d~~ieF~~~~Llr~D~~~~a~~~~~l~~~GilT~NEaR~~lGlpPi~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~ 480 (648) T protein:vir:79 401 VLNPDDKVEFRFNEIDMDSKIKLENQAVFLYEHNAISEDEMRELIGRDPVDDGEGRAKMHLQMVTIAQATALAALAPTPA 480 (648) T ss_pred cccccceEEEeecccchhhHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCccccccccccchhccccccCCCCCC Confidence 1246789999999999999999999999999999999999999999998764 355555554433222111111111 Q ss_pred c-------cC--cccCCCCCCcccCccccccc---ccccHHHHHHHHHhcC Q lcl|Aclame:pro 416 S-------SG--KTASVPQAVAASDGNKAITE---TEHDAVKAMFRGILKK 454 (454) Q Consensus 416 ~-------~~--~~~~~~~~~~~~d~~~~~~~---~~~~~~~a~~~~~~~~ 454 (454) + .+ .....+.+...+...++.+- +...-+..++..+++. T Consensus 481 ~~~~~~a~~eg~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 531 (648) T protein:vir:79 481 GGSSASASGDKKKKATDNKTKPTNQHGTKTSPKKQTNGRHVRYMQEMLLEY 531 (648) T ss_pred CCCCCCccccccccccCCCCCCCCCCCcCCCCccccchhhhhhhhhhhhcc Confidence 0 00 01111111111111111111 1112233444445544 No 86 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=100.00 E-value=5.8e-70 Score=400.18 Aligned_cols=358 Identities=11% Similarity=0.114 Sum_probs=262.2 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +|+|.|...-.+..... +-.+.+ ..+....++.+++|++||++||++||++|+++++..+++. T Consensus 1 M~~f~k~~~~~~~~~~~---~~~~~~--------------~~~~~~~~~~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~ 63 (378) T protein:vir:85 1 MNLFGKVVSFSRGKLNN---DTQRVT--------------AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) T ss_pred Cchhhhhhhhhhccccc---CCccee--------------eeeccchhhhhHHHHHHHHHHHHhHhhCceeEEEEecccc Confidence 66665432111100000 000000 1122234678899999999999999999999998776554 Q ss_pred c-----eehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEee-CCCCceeEEEEecCcceEEEECCCCceee Q lcl|Aclame:pro 82 R-----RETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIR-NARGQIKELRILDWNRVEPLVADDGEVFY 155 (454) Q Consensus 82 ~-----~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r-~~~G~~~~l~~l~~~~~~~~~~~~g~~~~ 155 (454) . ....+++.++|+.+||++||+.+||+.++.+++++||||+++++ +.+|.+..+ T Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~-------------------- 123 (378) T protein:vir:85 64 GSDTLISMAGSDLDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSETGELLDL-------------------- 123 (378) T ss_pred ccccccccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCCCceEEEE-------------------- Confidence 3 23445566677789999999999999999999999999998753 334443332 Q ss_pred EEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHH Q lcl|Aclame:pro 156 RITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEEN 235 (454) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~ 235 (454) ++.. ....+.++++||++.+...++ +.+.+..+... ....+++ +.++++++.+..+++++ T Consensus 124 -~~~~------~~~~~~~~dvih~~~~~~~~~--~~~~~~~a~~~----------~~~~~~~-~~~~g~l~~~~~l~~~~ 183 (378) T protein:vir:85 124 -LFAN------DKKEYKPEELVRLVSPFYINE--DTSILDNALAS----------IQTKLEQ-GKLRGLLKINAFLDIDN 183 (378) T ss_pred -EecC------CCEEEcccceEEEecCcCccc--hhhHHHHHHHH----------HHHHHhc-CCcceEEEeCCcCCHHH Confidence 2211 124567889999985443332 23333333322 2333444 46899999999999888 Q ss_pred HHHHHHHHHHH----hcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHH Q lcl|Aclame:pro 236 AKKLKSNWDSG----YTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEA 311 (454) Q Consensus 236 ~~~~~~~~~~~----~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~ 311 (454) .++++++|++. .++.|+|++++|++|++|++++++++++++ +.+++..++||++|||||.+|+. ++.|+ T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~------s~~e~ 256 (378) T protein:vir:85 184 TQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIELIKSELLTGYFMNENILLG------TATQE 256 (378) T ss_pred HHHHHHHHHHHHHHhhcccccccceecCCCceEEeccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcC------CchHH Confidence 77777777654 456789999999999999999999999996 67899999999999999999953 34588 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccc----------ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh Q lcl|Aclame:pro 312 LEQQYYSQCLQTLIESIELLLDEALETGEN----------ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRE 381 (454) Q Consensus 312 ~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~----------~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~ 381 (454) +..+|+++||.|++.+||++||++|+++.. ..+.|+.+.+++.|.+++++.+.+++++|++|+||+|+++ T Consensus 257 ~~~~f~~~tL~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~l 336 (378) T protein:vir:85 257 QQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKM 336 (378) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhccccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh Confidence 999999999999999999999999998632 1367899999999999999999999999999999999999 Q ss_pred cCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccc Q lcl|Aclame:pro 382 NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNK 434 (454) Q Consensus 382 g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 434 (454) |+||+||||.+++++|+++++.........+... +..++.++ T Consensus 337 gl~p~~gGD~~~~~~N~~~~~~~~~~~~~~~~~~-----------~~~e~~n~ 378 (378) T protein:vir:85 337 GEQPIEGGDIYIANLNAVAVKNLSDLQGSRKDVA-----------STDETNNQ 378 (378) T ss_pred CCCCCCCCCeEeecccccccccchhhcCccCCCC-----------CCCCCCCC Confidence 9999999999999999999886554322221111 11111111 No 87 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=100.00 E-value=3e-69 Score=396.21 Aligned_cols=358 Identities=11% Similarity=0.119 Sum_probs=262.3 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +++|.|.......... .+..+.+ ..+....++++++|++||++||++||++|+++|+....+. T Consensus 1 M~if~~~~~~~~~~~~---~~~~~~~--------------~~~~~~~~~~~~~v~~~v~~Ia~~iA~lp~~~~~~~~~~~ 63 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLN---NDTQRVT--------------AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) T ss_pred CchhHHhHhhhhcccc---cCcceee--------------eeecchhhhhhHHHHHHHHHHHHhHhhCceeeeeeccccc Confidence 5555543321111100 0000000 1123344678889999999999999999999988765443 Q ss_pred c-----eehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEee-CCCCceeEEEEecCcceEEEECCCCceee Q lcl|Aclame:pro 82 R-----RETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIR-NARGQIKELRILDWNRVEPLVADDGEVFY 155 (454) Q Consensus 82 ~-----~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r-~~~G~~~~l~~l~~~~~~~~~~~~g~~~~ 155 (454) . ....++++++|+.+||++||+.+||+.++.++++.||+|++++. +..|.+..+++. T Consensus 64 ~~~~~~~~~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~~----------------- 126 (378) T protein:vir:94 64 GSDTLISMAGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSETGELLDLLFA----------------- 126 (378) T ss_pred ccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEEe----------------- Confidence 2 23445667777789999999999999999999999999998653 444554433221 Q ss_pred EEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHH Q lcl|Aclame:pro 156 RITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEEN 235 (454) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~ 235 (454) . ....+++++|||++.+...+ .+.+++..+...+. ..++++ .++++|+.+..+++++ T Consensus 127 ----~------~~~~~~~~dvih~~~~~~~~--~~~~~~~~~~~~~~----------~~~~~~-~~~g~l~~~~~l~~~~ 183 (378) T protein:vir:94 127 ----N------DKKEYKPEELVRLTSPFYIN--EDTSILDNALASIQ----------TKLEQG-KLRGLLKINAFLDIDN 183 (378) T ss_pred ----c------CcEEechhceeeecCcCCcc--cchhHHHHHHHHHH----------HHHhhC-CcccceeeCCcCCHHH Confidence 1 12457889999999654333 24455555444332 233443 5788999999888776 Q ss_pred HHHHHHHHH----HHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHH Q lcl|Aclame:pro 236 AKKLKSNWD----SGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEA 311 (454) Q Consensus 236 ~~~~~~~~~----~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~ 311 (454) .++.+++|+ +.+++.|+|++++|++|++|++++++++++++ +.++++.++||++|||||.+|++. ..|+ T Consensus 184 ~~~~~e~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgvPp~~l~g~------~~e~ 256 (378) T protein:vir:94 184 TQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT------ATQE 256 (378) T ss_pred HHHHHHHHHHHHHHhhcccccccceeccCCceEEEccCChHHhhH-HHHHHHHHHHHHHhCCCHHHhcCC------chHH Confidence 655555554 45567888999999999999999999999996 778999999999999999999532 2378 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccc----------ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh Q lcl|Aclame:pro 312 LEQQYYSQCLQTLIESIELLLDEALETGEN----------ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRE 381 (454) Q Consensus 312 ~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~----------~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~ 381 (454) +..+|+++||.|+++.||++||++|+++.. ..+.|+++.+++.|.+++++.+.+++++|++|+||+|+++ T Consensus 257 ~~~~f~~~tl~P~~~~ie~~l~~~Ll~~~e~~~g~~~~~~~~~~f~~~~l~~~d~~~~~e~~~~~~~~G~~t~NE~R~~~ 336 (378) T protein:vir:94 257 QQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKM 336 (378) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhhcccceeEeecchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh Confidence 889999999999999999999999997532 2467999999999999999999999999999999999999 Q ss_pred cCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccc Q lcl|Aclame:pro 382 NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNK 434 (454) Q Consensus 382 g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 434 (454) |+||+||||.+++++|+++++..+......+...+.+. +.++ T Consensus 337 g~~p~~ggd~~~~~~n~~~~~~~~~~~~~~~~~~~~~e-----------~~n~ 378 (378) T protein:vir:94 337 GEQPIEGGDVYIANLNAVAVKNLSDLQGNRKDVTSTDE-----------TNNQ 378 (378) T ss_pred CCCCCCCCCeeeecccccchhcchhcccccCCCCCCCC-----------CCCC Confidence 99999999999999999998866554333222111111 1111 No 88 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=100.00 E-value=6.6e-69 Score=394.37 Aligned_cols=428 Identities=15% Similarity=0.154 Sum_probs=305.0 Q ss_pred Ccchhhhhccc----c-----------ccccccCcccchhhhhhhhhhccccccCCccccH---HHHHh-hHHHHHHHHH Q lcl|Aclame:pro 1 MWNLLRRTRKN----Q-----------KSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADP---EAVLS-FHAVFACISL 61 (454) Q Consensus 1 m~n~f~r~~~~----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~v~~~i~~ 61 (454) |-+-=+..+.. . ..+.......+ ..- ...-..+.++ ....+ ++++++||++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------~~~~~p~~~~~~L~~~~e~~~~~~~~i~~ 70 (651) T protein:vir:99 1 MTDTTGETQETKVHVEGLGGEADLAKSPNSTQIPDHRI----QSH------NVGVNPPYNPDRLAAFLELNETLATGIRK 70 (651) T ss_pred CCCccceeeeeEEEeecccccccccccccccccchhhh----ccc------CCCCCCCCCHHHHHHHHhcChHHHHHHHH Confidence 44421111100 0 00011111111 000 0001111222 33334 8999999999 Q ss_pred HHHhhcccceEEEeccc-ccc--ceeh----------hhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC Q lcl|Aclame:pro 62 ISQDIAKMRLRLMQTDA-QGI--RRET----------RRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA 128 (454) Q Consensus 62 ia~~va~~~~~~~~~~~-~~~--~~~~----------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~ 128 (454) ++++||+++|.+..... ++. ..+. .++.+......+|+.+++.+|++.++.|++.+|++|+.++++. T Consensus 71 ~~~~iag~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~tGna~ieiIrn~ 150 (651) T protein:vir:99 71 KSRYEVGFGFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHGVGWLALEMLTDI 150 (651) T ss_pred HhhhhhccCceeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHHHhhHhhhhhhcC Confidence 99999999999865322 111 1110 1122333345578899999999999999999999999999999 Q ss_pred CCceeEEEEecCcceEEEECCCCc---------------------------------eeeEEec---------------- Q lcl|Aclame:pro 129 RGQIKELRILDWNRVEPLVADDGE---------------------------------VFYRITP---------------- 159 (454) Q Consensus 129 ~G~~~~l~~l~~~~~~~~~~~~g~---------------------------------~~~~~~~---------------- 159 (454) .|.+.+++++++..+++..+.... .++.+.. T Consensus 151 ~g~pv~L~~lp~~~~Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v 230 (651) T protein:vir:99 151 EGRPVGLAYVPARTVRVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDRYRGQEVVIDESGDEP 230 (651) T ss_pred ccchhhhhhcChhheeeecccccccchhhhhhhcccccccchhHHHHHHHHHhcCcceEEEeeccccceeeeeccCCcce Confidence 999999999999988765432110 0000000 Q ss_pred ------c-----------------ccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 160 ------D-----------------RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFR 216 (454) Q Consensus 160 ------~-----------------~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ 216 (454) + .....+....+++++||||+.+++.++++|+||+..+...|.++.++++++.++|+ T Consensus 231 ~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~eViHir~~~~~~g~~G~spl~~a~~~i~~a~~a~~~~~~~f~ 310 (651) T protein:vir:99 231 TIRYREDEESEREPIFVDRETGDVTTGDANGLENRPANELIFIPNPSILEDDYGVPDWVSAIRTISADEAAKDYNRDFFD 310 (651) T ss_pred eEEeccCcceeeeeecccceeeeEEEcCCCceeEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 0 00011223457899999999988889999999999999999999999999999999 Q ss_pred ccCCcceeEecCc-cCCHHHHHHHHHHHHHHhcCcccCCceecCC-----------Cceeeeccccc-hhhHHHHHHHHH Q lcl|Aclame:pro 217 NGGRPSGVIEIPG-SITEENAKKLKSNWDSGYTGENAGKTAILSN-----------GAKYNPTTFSP-VDSQTVEQLKMT 283 (454) Q Consensus 217 ng~~p~~~l~~~~-~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~-----------g~~~~~l~~~~-~d~~~~e~~~~~ 283 (454) ||++|+++|+++. .+++++.+++++.|++.++ |+|+++||++ |++|+++++++ +|+||+|+++++ T Consensus 311 NG~~p~gil~~~~~~ls~e~~~~lr~~~~~~~~--nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfle~r~~~ 388 (651) T protein:vir:99 311 NDTIPRMVIKVTGGELSEESKRDLRQMLNGLRE--ESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFRQFREKN 388 (651) T ss_pred ccCCCceEEEecCCCCCHHHHHHHHHHHHHHhc--cCCceEEeecccccccccccCCceEEEcCcCchhhHHHHHHHHHH Confidence 9999999999975 4899999999999998774 6788888865 99999999987 599999999999 Q ss_pred HHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc------ceeeecchhhhhcCHH Q lcl|Aclame:pro 284 AEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGEN------ESTEFDVTTLLRMDSE 357 (454) Q Consensus 284 ~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~------~~~~f~~~~l~~~d~~ 357 (454) +++||++|||||.+||..+++|++|+|++.+.|+++||.|++..||++||++|+++.. .++.|+...+++.|.+ T Consensus 389 ~~eIa~afgVPp~~lG~~~~~~~sn~E~~~~~f~~~tL~P~~~~ie~eln~kLl~~~e~~~~~~i~~ef~~~~llr~D~~ 468 (651) T protein:vir:99 389 EHEIAKVLEVPPVKIGVTDSANRSNSDQQDKDFALEVIQPEQHTFAEWLYQIIHQQALGVTDWTIEYELRGADQPKQEAQ 468 (651) T ss_pred HHHHHHHhCCCHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCceEEEEeccchhhhccHH Confidence 9999999999999999999999999999999999999999999999999999997632 2456777789999999 Q ss_pred HHHHHHHHHHhCCCcCHHHHHHHhcCCCCCC--ccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccc Q lcl|Aclame:pro 358 RRMKTLGDAVKNTLLTPNEARKRENLPPLAG--GDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKA 435 (454) Q Consensus 358 ~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 435 (454) ++++.+..++++|+||+||+|+++|+||+++ |+..+.+.++...+...+ + +.......++ .+.. T Consensus 469 ~~~e~~~~~i~~G~~T~NE~R~~lglppi~~~~gd~~l~~~~~~~~g~~~~---------g-ge~~~~~~~~----~~~~ 534 (651) T protein:vir:99 469 LAEQRVRAMRLAGVGLVDEAREELGLDPLGEPYGEMTLSEFEAEVAGDVAG---------G-GETEAVHEPP----EENK 534 (651) T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcccccccccccccccccccc---------C-CCCcccccCc----cccc Confidence 9999999999999999999999999999965 666655544333221111 0 0011111111 1122 Q ss_pred cccccccHHHHHHH--HHhcC Q lcl|Aclame:pro 436 ITETEHDAVKAMFR--GILKK 454 (454) Q Consensus 436 ~~~~~~~~~~a~~~--~~~~~ 454 (454) ..+.+.++.++.+. .++++ T Consensus 535 ~~~~e~~~~~~~~~~~e~~~~ 555 (651) T protein:vir:99 535 IGEREWDTVKSELTTKDPIEQ 555 (651) T ss_pred cccchhhhhhhhhcccchhhh Confidence 22344555555444 23333 No 89 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=100.00 E-value=3e-62 Score=357.86 Aligned_cols=274 Identities=16% Similarity=0.208 Sum_probs=248.7 Q ss_pred hcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEE Q lcl|Aclame:pro 66 IAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEP 145 (454) Q Consensus 66 va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~ 145 (454) ||++|+++++.++.+ .++.+.+|+.+||++||+.+||+.++.+++++||||++++|+.+|.+++|||++|++|++ T Consensus 1 ia~l~~~~~~~~~~~-----~~~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G~~~~l~~l~~~~v~v 75 (278) T protein:vir:78 1 MASLPLKMYEDYKVV-----NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEM 75 (278) T ss_pred CccceeEEEecCccc-----ccHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCCcEEEEEEECCceeEE Confidence 999999999755433 466777888999999999999999999999999999999999999999999999999999 Q ss_pred EECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeE Q lcl|Aclame:pro 146 LVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVI 225 (454) Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l 225 (454) ..+.++...++.+.. ..+..+.+++++|||+++.++.++++|+||+.++...+....++++++...+.+ .|++++ T Consensus 76 ~~~~~~~~~~y~~~~---~~g~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~i~ 150 (278) T protein:vir:78 76 LIENQSRELYYSIHA---ATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQK--PDSFML 150 (278) T ss_pred EEcCCCceEEEEEEc---CCceEEEEccccEEEECCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHhcC--CCcEEE Confidence 998887665544432 234567899999999999888999999999999999999999999987665555 478999 Q ss_pred ecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccccc Q lcl|Aclame:pro 226 EIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPS 305 (454) Q Consensus 226 ~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~ 305 (454) ..+..+++|+.++++++|++.++ ++|+++++++|++++++++++.|+++++.+++++++||++|||||.++|+.+++| T Consensus 151 ~~~~~l~~e~~~~~~~~~~~~~~--~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~ 228 (278) T protein:vir:78 151 KYGSNVGKEKRQQVLEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTN 228 (278) T ss_pred EeCCCCCHHHHHHHHHHHHHHhc--cCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC Confidence 99999999999999999998874 5789999999999999999999999999999999999999999999999999999 Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc----cceeeecchhh Q lcl|Aclame:pro 306 SDNVEALEQQYYSQCLQTLIESIELLLDEALETGE----NESTEFDVTTL 351 (454) Q Consensus 306 ~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~----~~~~~f~~~~l 351 (454) ++|++++.+.|++.||+|+++.|+++||++|+++. +.+++||++.| T Consensus 229 ~sn~~~~~~~~~~~~l~P~~~~i~~~ln~~L~~~~e~~~g~~~~f~~~~l 278 (278) T protein:vir:78 229 FAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKIGILNLTLNLI 278 (278) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhcCCceEEEecccC Confidence 99999999999999999999999999999999864 46899999999 No 90 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=100.00 E-value=2.9e-56 Score=325.10 Aligned_cols=337 Identities=13% Similarity=0.095 Sum_probs=246.9 Q ss_pred hhhhcccc-ccccccCc--c-------------cchhhhhhhhhhccccccCCcccc-------HHHHHhhHHHHHHHHH Q lcl|Aclame:pro 5 LRRTRKNQ-KSGRDVRE--A-------------GWTSLFQAVAEPFAGAWQQGVKAD-------PEAVLSFHAVFACISL 61 (454) Q Consensus 5 f~r~~~~~-~~~~~~~~--~-------------~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~i~~ 61 (454) -+|+.+.. ++...... + .-...|.. +++- ++..+..++ ...+.+.|+-+.|+.. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-g~p~--~~~~~~~~~~~~~~~~~~~~~~~pi~~~~la~ 77 (368) T protein:vir:79 1 MSRNKTRRAARAASAHVRTANTDAPTEHHTDRAAQAEVFSF-GDPV--EVLDRRELLDYVECMRMGQWYEPPMPWDGLAR 77 (368) T ss_pred CCccccccchhccCcccccccccCcchhhccccCceEEEEc-CCce--eecchhhHHHHHHHHhccchhccCcCHHHHHH Confidence 22222111 11110000 0 00000100 0000 000000000 0112333433444433 Q ss_pred HHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCc Q lcl|Aclame:pro 62 ISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWN 141 (454) Q Consensus 62 ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~ 141 (454) +.+.- +. ........+.+..++.+||++||+.+|++ ++.+++++||+|++++|+..|++++|+|+++. T Consensus 78 ~~~~~---~~--------h~~~~~~~~n~l~l~~~Pn~~~t~~~f~~-l~~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~ 145 (368) T protein:vir:79 78 SFRAA---AH--------HSSAVYVKRNILVSTFIPHPLLSRATFER-LVLDWQVFGNAYLERRENVLGGTIRLDTPLAK 145 (368) T ss_pred HHhhc---cc--------cchhhhhhcchhhhhcCCCcCCCHHHHHH-HHHHHhhcCCeEEEEEEcCCCCEEEEEEeCcc Confidence 32222 11 11112233445567789999999999976 67899999999999999999999999999999 Q ss_pred ceEEEECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCc Q lcl|Aclame:pro 142 RVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRP 221 (454) Q Consensus 142 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p 221 (454) +|++..+.+. ++++. ..+..+.|++++|||++..++.+++||+||+.++..++.+..++..+..++|+||++| T Consensus 146 ~v~~~~~~~~--~~~~~-----~~~~~~~~~~~dIihir~~~~~~~~yGlsp~~~a~~si~l~~aa~~~~~~~~~NGa~~ 218 (368) T protein:vir:79 146 YVRRGLDLNT--YFFVQ-----NWQQPYTFAAGSVFHLQEPDINQEVYGLPEYLSALNATWLNESATLFRRRYYKNGSHA 218 (368) T ss_pred cceeeccCCE--EEEEe-----cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 9997766432 22222 2346688999999999988889999999999999999999999999999999999999 Q ss_pred ceeEecC-ccCCHHHHHHHHHHHHHHhcCcccCCceec-----CCCceeeeccccchhhHHHHHHHHHHHHHHHHhccch Q lcl|Aclame:pro 222 SGVIEIP-GSITEENAKKLKSNWDSGYTGENAGKTAIL-----SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPA 295 (454) Q Consensus 222 ~~~l~~~-~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~ 295 (454) +++|.++ ..+++++.++++++|++..+..|+|+++|+ ++|++|++++++++|+||++.+++++++||++||||| T Consensus 219 ~gil~~~~~~l~~e~~~~lk~~~~~~~G~~N~g~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp 298 (368) T protein:vir:79 219 GFILYMTDAAQKQEDVDTLREAMKSAKGPGNFRNLFMYAPNGKKDGIQLLPVSEVAAKDEFWNIKNVTRDDQLAAHRVPP 298 (368) T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHhcCCcccCceeEecCCCCccceeEEEcCCCHHHHHHHHHHHHhHHHHHHHhCCCH Confidence 9999886 468999999999999987667899999998 6789999999999999999999999999999999999 Q ss_pred hhhcccccc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHH Q lcl|Aclame:pro 296 YKIGVGQPP--SSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAV 367 (454) Q Consensus 296 ~~lg~~~~~--~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~ 367 (454) .++|+.++. +++|+|++.+.|++++|.|+++.|+ ++|.+|.. ..++|+...+++.|.+.++....+-- T Consensus 299 ~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~ie-~ln~~l~~---e~~rF~~~~l~~~D~~a~a~~~~rsa 368 (368) T protein:vir:79 299 QLMGIIPNNTGGFGDVEKAAMVFARNEVKPLQDRLL-AINDWIGD---EVVRFAPYALGGHDQPAAAPGGQRSA 368 (368) T ss_pred HHccccCCCCCccccHHHHHHHHHHHHHHHHHHHHH-HHHhccCc---ceeeechhHhhcccccccCCcccccC Confidence 999987654 5899999999999999999999998 68887743 35789999999999887776222111 No 91 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=100.00 E-value=3.9e-55 Score=318.88 Aligned_cols=320 Identities=13% Similarity=0.114 Sum_probs=242.1 Q ss_pred Ccch----hhhhccccccccccC--------------cccchh---------hhhhhhhhccccccCCccccH----HHH Q lcl|Aclame:pro 1 MWNL----LRRTRKNQKSGRDVR--------------EAGWTS---------LFQAVAEPFAGAWQQGVKADP----EAV 49 (454) Q Consensus 1 m~n~----f~r~~~~~~~~~~~~--------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~----~~~ 49 (454) +|+- .+|+++..+...... ..+|++ +++.+...+.+.+- ..+++. +.. T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fg~p~~v~~~~~~~~~~~~~~~~~~~-~pp~~~~~La~~~ 96 (376) T protein:vir:10 18 IFIHGVLRMSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWF-EPPVSFAGLAKSF 96 (376) T ss_pred hhhcccccchhccCCCcccchhhhhHhhhccCcceeEEEEcCCceeccCcchhhhhhhhhhcCcee-cCCCCHHHHHHHH Confidence 4441 233222211111100 001111 11111111111100 012222 222 Q ss_pred HhhHHHHHHHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC Q lcl|Aclame:pro 50 LSFHAVFACISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR 129 (454) Q Consensus 50 ~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~ 129 (454) ..++...+||...++.+++ .-+||+++|..+|++. +.+++++||+|++++|+.. T Consensus 97 ~~~~~h~s~l~~k~n~l~~-------------------------~~~Pnp~lT~~~f~~~-v~d~ll~Gnay~~~~rn~~ 150 (376) T protein:vir:10 97 RASTHHSSALFFKANVLAS-------------------------TFRPHRWLSRHAFERW-ALDFLTFGNGYLERRRNMV 150 (376) T ss_pred hhhHHhhhhHHHHhHHHHh-------------------------ccCCCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCC Confidence 2344444555444333322 2469999999999865 5689999999999999999 Q ss_pred CceeEEEEecCcceEEEECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHH Q lcl|Aclame:pro 130 GQIKELRILDWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQE 209 (454) Q Consensus 130 G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~ 209 (454) |.+++|+|++|.+|++..+.++. .+.. ..++.+.|++++|||++..++.+++||+|++.++..++.+..++.. T Consensus 151 G~~~~L~pl~~~~vr~~~d~~~~---~~~~----~~~~~~~~~~~eViHir~~~~~~~~yGls~~~~a~~si~l~~aa~~ 223 (376) T protein:vir:10 151 GGTLRLEPALAKYVRRKADFNGF---VYVN----GWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTL 223 (376) T ss_pred CCEEEEEEeCCcceEEEeeCCeE---EEEE----cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHH Confidence 99999999999999998876542 2221 2345678999999999998889999999999999999999999999 Q ss_pred HHHHHHhccCCcceeEecC-ccCCHHHHHHHHHHHHHHhcCcccCCceec-----CCCceeeeccccchhhHHHHHHHHH Q lcl|Aclame:pro 210 NSTSFFRNGGRPSGVIEIP-GSITEENAKKLKSNWDSGYTGENAGKTAIL-----SNGAKYNPTTFSPVDSQTVEQLKMT 283 (454) Q Consensus 210 ~~~~~~~ng~~p~~~l~~~-~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~ 283 (454) ++.++|+||++|++||.++ ..+++++.++++++|++..+..|+++++|+ ++|+++++++++++|+||+|.++++ T Consensus 224 f~~~~f~NGa~pggIl~~~d~~l~~e~~~~lr~~~~~~~G~~N~~~~~vl~~~g~~~Gi~~~pls~~~~d~qf~e~k~~~ 303 (376) T protein:vir:10 224 FRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVT 303 (376) T ss_pred HHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEccCCHHHHHHHHHHHHh Confidence 9999999999999999886 468999999999999986666889999888 5689999999999999999999999 Q ss_pred HHHHHHHhccchhhhccccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHH Q lcl|Aclame:pro 284 AEIVCSVFRVPAYKIGVGQP--PSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSER 358 (454) Q Consensus 284 ~~~Ia~~fgvp~~~lg~~~~--~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~ 358 (454) +++||++|||||.++|+.++ ++++|+|++.+.|++++|.|+++.|+ ++|.+|.. ..++|+...|++.|.++ T Consensus 304 ~~eIa~af~VPp~llGi~~~~t~~~sn~eq~~~~f~~~~L~Pl~~~ie-eln~~L~~---~~~~F~~~~Llr~d~ka 376 (376) T protein:vir:10 304 RDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFA-ELNDWLGE---EVVRFDDYEIPPAPVAA 376 (376) T ss_pred HHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHH-HHHhhccc---cccccChhHhhcccccC Confidence 99999999999999998765 46899999999999999999999998 58887743 25899999999999887 No 92 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=100.00 E-value=4.2e-55 Score=318.71 Aligned_cols=325 Identities=13% Similarity=0.021 Sum_probs=239.2 Q ss_pred Ccchhhhhccccc----ccccc--Ccccc---hhhhhhhhhhccccc-cCCccccH----HHHHhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MWNLLRRTRKNQK----SGRDV--REAGW---TSLFQAVAEPFAGAW-QQGVKADP----EAVLSFHAVFACISLISQDI 66 (454) Q Consensus 1 m~n~f~r~~~~~~----~~~~~--~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~v~~~i~~ia~~v 66 (454) |---...+..... ..+.. .+.+. .+++..+.-.+.+.. --..+++. +....++.+.+||....+.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~epp~~~~~La~l~~~n~~h~~~i~~k~N~l 80 (348) T protein:vir:26 1 MTEQLIHSHTTDGTESKSVYSFDPNPEPVDTNSWMTRYCELFYNDFDDYWEPPISLKGLAEIANANGYHGSLLKARANYV 80 (348) T ss_pred CCccccchhhccccCCceEEEecCCCeeecCcchHHHHHHHHhcCCCccccCCCCHHHHHHHHhhhhhhhhhHhhhhhHH Confidence 2211111000000 00000 00000 111122211111100 00111222 12222344444443333322 Q ss_pred cccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEE Q lcl|Aclame:pro 67 AKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPL 146 (454) Q Consensus 67 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~ 146 (454) ++ .-.||+++|..+|++. +.+++++||||++++|+..|++++|+|+++.+|++. T Consensus 81 ~~-------------------------~~~Pn~~~t~~~f~~~-~~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~v~~~ 134 (348) T protein:vir:26 81 AG-------------------------RFMNGGGLPMYKMNSA-CWDYFGLGMSAFVKIRSYLKNVIALEPLPMVHMRKR 134 (348) T ss_pred hh-------------------------cccCCCCCCHHHHHHH-HHHHHhcCCeEEEEEEcCCCcEEEEEEecCceeEee Confidence 21 2369999999999776 468999999999999999999999999999999987 Q ss_pred ECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEe Q lcl|Aclame:pro 147 VADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIE 226 (454) Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~ 226 (454) .+.+ +|.+.. .+..+.|++++|||++..++.+++||+|++.+++.++.+..++..+.+++|+||++|++||. T Consensus 135 ~d~~---~~~~~~-----~g~~~~f~~~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~ 206 (348) T protein:vir:26 135 KNGD---FVQLLR-----NNEQKVFKAKDVIFIPQYDPQQQIYGLPDYLGSIQSSLLNRDATLFRRRYYLNGAHMGFIFY 206 (348) T ss_pred ecCc---EEEEEe-----cCeEEEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE Confidence 6542 222222 24567899999999998888899999999999999999999999999999999999999998 Q ss_pred cCc-cCCHHHHHHHHHHHHHHhcCcccCCceec-----CCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcc Q lcl|Aclame:pro 227 IPG-SITEENAKKLKSNWDSGYTGENAGKTAIL-----SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGV 300 (454) Q Consensus 227 ~~~-~~s~e~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~ 300 (454) ++. .+++|+.+++++.|++..++.|.++++++ ++|+++++++++++|+||++.+++++++||++|||||.++|+ T Consensus 207 ~~~~~ls~e~~~~lk~~~~~~~G~~n~~~~~vl~~~g~~~Gi~~~pis~~~~d~qf~e~k~~t~~dIa~af~VPp~llGi 286 (348) T protein:vir:26 207 ATDPNLSEADEKALKEKIASSKGIGNFRSMFVNIPNGKEKGIQLIPVGDIATKDEFERIKNITAQDIFVGHRFPAGMGGM 286 (348) T ss_pred ecCCCCCHHHHHHHHHHHHHhcCcccccceeEEcCCCCccceeEEEccCChhHHHHHHHHHhhHHHHHHHhCCCHHHccc Confidence 764 68999999999999998777899999988 789999999999999999999999999999999999999997 Q ss_pred cc--cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhh-hhcCHHHH Q lcl|Aclame:pro 301 GQ--PPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTL-LRMDSERR 359 (454) Q Consensus 301 ~~--~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l-~~~d~~~~ 359 (454) .+ +++++|+|++.+.|++++|.|+++.|+++||++|..+...+++|+++.. .+.|..+. T Consensus 287 ~~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~~~fdl~~~~e~~~~~a~ 348 (348) T protein:vir:26 287 LPQQGANVPDPLKVSQVYDFYEVIPVCKRFMDAVNNDPEIPDNLKLKFNLNPGVESANGSAV 348 (348) T ss_pred cCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCccEEEEecCcccccchhhcC Confidence 54 4678999999999999999999999999999999877778888988853 33333222 No 93 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=100.00 E-value=5e-55 Score=318.30 Aligned_cols=330 Identities=15% Similarity=0.154 Sum_probs=240.7 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccc--cHHHHHhh------HHHHHHHHHHHHhhcccceE Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKA--DPEAVLSF------HAVFACISLISQDIAKMRLR 72 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~v~~~i~~ia~~va~~~~~ 72 (454) |--.-+|.........+. . -...|.. ++|- +...+..+ ..+.+..+ |.-+ .-+|+.+-..+.+ T Consensus 1 m~~~~~~~~~~~~~~~~~--~-~~~~~~~-~~p~--~~~~~~~~~~~~~~~~~~~~~~~pp~~~---~~la~l~~~~~~h 71 (346) T protein:vir:10 1 MKKQLRKNLTQNDRLQPQ--A-QTEIFSF-GDPI--PVLDRADILNYLECSAMYEKWYNPPMSF---DGLAKSLRSSTHH 71 (346) T ss_pred CCcccCCCCCcccccccc--c-CeEEEec-CCcc--eecCchhHHHHHHHhhcCCceEecCCCH---HHHHHHHHhhhhc Confidence 322111111111111110 0 0011111 0000 00000000 00000000 1111 1123322223322 Q ss_pred EEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCc Q lcl|Aclame:pro 73 LMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE 152 (454) Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~ 152 (454) - .....+.+.+..++.+||++||+.+|++. +.+++++||||++++|+..|++++|+|+++.+|++..+.++. T Consensus 72 ~-------~~i~~k~n~l~~l~~~Pn~~~t~~~f~~~-~~d~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~ 143 (346) T protein:vir:10 72 E-------SAIITKANILLSTCEVDSRYLSRRDLSSF-VKDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQF 143 (346) T ss_pred c-------hhhhhhhhhHHHHHhCCCCCCCHHHHHHH-HHHHHhcCCeEEEEEEcCCCcEEEEEEecCCceEEEEcCCeE Confidence 1 11112344566777899999999999875 678999999999999999999999999999999998877653 Q ss_pred eeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecC-ccC Q lcl|Aclame:pro 153 VFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIP-GSI 231 (454) Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~-~~~ 231 (454) .|.+. ...+..+.|++++|||++..++.+++||+|++.++..++.+..++..++.++|+||++|++||.++ ..+ T Consensus 144 -~~~~~----~~~g~~~~~~~~dIih~r~~~~~~~~~G~~~~~~a~~si~l~~~a~~~~~~~~~NG~~~~~il~~~d~~l 218 (346) T protein:vir:10 144 -YYVPQ----RFDHQEHEFAKGSIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSDASQ 218 (346) T ss_pred -EEEEE----ccCCeEEEEecccEEEecCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCC Confidence 23222 123456889999999999888889999999999999999999999999999999999999999876 468 Q ss_pred CHHHHHHHHHHHHHHhcCcccCCceecC-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccc--c Q lcl|Aclame:pro 232 TEENAKKLKSNWDSGYTGENAGKTAILS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP--P 304 (454) Q Consensus 232 s~e~~~~~~~~~~~~~~g~n~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~--~ 304 (454) ++++.++++++|++.+++.|+++++|+. .|++++|++.+++|+||++.+++++++||++|||||.++|+.++ + T Consensus 219 ~~e~~~~i~~~~~~~~g~~n~~~~~vl~~~~~~~gi~~~pis~~~~d~qf~e~k~~~~~~I~~af~VPp~llG~~~~~~~ 298 (346) T protein:vir:10 219 KQEDVENIRQQLKQSKGVGNFKNLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSRDDVLAAHRVPPQLMGIIPNNTG 298 (346) T ss_pred CHHHHHHHHHHHHHhcCccccCceeEecCCCCccceeEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCC Confidence 9999999999999988888999999885 47899999999999999999999999999999999999998765 4 Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCH Q lcl|Aclame:pro 305 SSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDS 356 (454) Q Consensus 305 ~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~ 356 (454) +++|+|++...|++++|.|+++.||+ +|.+|.. ..++|+...|++.|. T Consensus 299 ~~s~~e~~~~~f~~~~l~P~~~~iee-~n~~L~~---e~i~F~~~~ll~~~~ 346 (346) T protein:vir:10 299 GFGNVADAAEVFFITEIEPLQERLKE-FNQWLGQ---EVIKFKPSKLLQRTQ 346 (346) T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH-HHhhccc---ceeeechhhhcccCC Confidence 68999999999999999999999985 7777743 358999999999987 No 94 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=100.00 E-value=3.9e-54 Score=313.37 Aligned_cols=316 Identities=13% Similarity=0.134 Sum_probs=237.2 Q ss_pred hhhhccccccccccC--------------cccchhh---------hhhhhhhccccccCCccccH----HHHHhhHHHHH Q lcl|Aclame:pro 5 LRRTRKNQKSGRDVR--------------EAGWTSL---------FQAVAEPFAGAWQQGVKADP----EAVLSFHAVFA 57 (454) Q Consensus 5 f~r~~~~~~~~~~~~--------------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~ 57 (454) -+|++..++...... ...|++. ++.....+.+.+- ..+++. +.+..++...+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~-~pp~~~~~la~~~~~~~~h~~ 79 (351) T protein:vir:79 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWF-EPPVSFAGLAKSFRASTHHSS 79 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhhcCcee-cCCCCHHHHHHHHhhhHhhhh Confidence 222222111111000 0011110 1111111111000 011222 11222333334 Q ss_pred HHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEE Q lcl|Aclame:pro 58 CISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRI 137 (454) Q Consensus 58 ~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~ 137 (454) ||...++.+++ .-+||++||..+|++ ++.+++++||||++++|+..|.+++|+| T Consensus 80 ~l~~k~n~l~~-------------------------~~~Pnp~~t~~~f~~-~v~d~ll~Gnay~~~~r~~~G~~~~L~~ 133 (351) T protein:vir:79 80 ALFFKANVLAS-------------------------TFRPHRWLSRHAFER-WALDFLTFGNGYLERRRNMVGGTLRLEP 133 (351) T ss_pred hhhhhhhHHhh-------------------------cccCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCCEEEEEE Confidence 43322222211 347999999999975 5679999999999999999999999999 Q ss_pred ecCcceEEEECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 138 LDWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRN 217 (454) Q Consensus 138 l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~n 217 (454) ++|.+|++..+.++ |+++. ..++.+.|++++|||++..++.+++||+|++.++..++.+..++..+.+++|+| T Consensus 134 l~~~~v~~~~~~~~---~~~~~----~~g~~~~~~~~eIihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~N 206 (351) T protein:vir:79 134 ALAKYVRRKADFSG---FVYVN----GWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYEN 206 (351) T ss_pred eCCcceeeeecCCe---EEEEe----cCceEEEEcCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 99999999887764 22221 234567899999999999988999999999999999999999999999999999 Q ss_pred cCCcceeEecCc-cCCHHHHHHHHHHHHHHhcCcccCCceec-----CCCceeeeccccchhhHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 218 GGRPSGVIEIPG-SITEENAKKLKSNWDSGYTGENAGKTAIL-----SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVF 291 (454) Q Consensus 218 g~~p~~~l~~~~-~~s~e~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~f 291 (454) |++|+++|.++. .+++++.++++++|++..+..|.++++++ ++|++++|++++++|+||++.+++++++||++| T Consensus 207 Ga~pg~il~~~~~~ls~e~~~~lk~~~~~~~G~~N~~~~~v~~~~g~~~gi~~~pl~~~~~d~ef~e~k~~s~~eI~~a~ 286 (351) T protein:vir:79 207 GSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAH 286 (351) T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHh Confidence 999999998764 68999999999999987666889999887 578999999999999999999999999999999 Q ss_pred ccchhhhccccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHH Q lcl|Aclame:pro 292 RVPAYKIGVGQP--PSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSER 358 (454) Q Consensus 292 gvp~~~lg~~~~--~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~ 358 (454) ||||.++|+.+. ++++|+|++.+.|++++|.|+++.|++ +|.+|- ...++|+...+++.|.++ T Consensus 287 ~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~Pl~~~ie~-ln~~lg---~~~~~F~~~~llr~d~~a 351 (351) T protein:vir:79 287 RVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLG---DEVVTFDDYEIPPAPVAA 351 (351) T ss_pred CCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcC---cceeeeChhhhccccccC Confidence 999999998665 468999999999999999999999985 777663 235799999999999887 No 95 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=100.00 E-value=4.6e-54 Score=312.98 Aligned_cols=321 Identities=13% Similarity=0.083 Sum_probs=237.5 Q ss_pred hhhhccccccccccCcc------cch-----hhhhhhhhhccccc-cCCccccHH----HHHhhHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 5 LRRTRKNQKSGRDVREA------GWT-----SLFQAVAEPFAGAW-QQGVKADPE----AVLSFHAVFACISLISQDIAK 68 (454) Q Consensus 5 f~r~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~v~~~i~~ia~~va~ 68 (454) .++..+++......... +++ +.+.+.+..+...+ --..+++.. .+..++...+||...++.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~~~~~~~~h~~~i~~k~n~l-- 78 (345) T protein:vir:37 1 MKTNVKTDNKKGIVIAPINDRTFSLSEITASPALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHSRANMV-- 78 (345) T ss_pred CCccccccchhhhcCCCceEEEeecCCcccchhhcccceeeecCCccccCCCCHHHHHHHhhcchhhcchhhhhhhHH-- Confidence 22222222111111000 000 11111111000000 000111111 1112233333332222111 Q ss_pred cceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEEC Q lcl|Aclame:pro 69 MRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVA 148 (454) Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~ 148 (454) .....||++||+.+|++. +.+++++||||++++|+..|++++|+|++|.+|++..+ T Consensus 79 -----------------------~~~~~Pn~~~t~~~f~~~-v~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~d 134 (345) T protein:vir:37 79 -----------------------SATYEGGKALSKMEMRAL-CLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVHKD 134 (345) T ss_pred -----------------------hhccCCCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCCEEEEEEecCceeEEeec Confidence 123479999999999765 56889999999999999999999999999999998776 Q ss_pred CCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecC Q lcl|Aclame:pro 149 DDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIP 228 (454) Q Consensus 149 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~ 228 (454) .+.... +........+....|++++|||++..++.+++||+|++.++..++.+..++..++.++|+||++|++||.++ T Consensus 135 ~~~~~~--~~~~~~~~~g~~~~~~~~eViHir~~~~~~~~~Gl~~~~~a~~si~l~~~a~~~~~~~f~NGa~~~~Il~~t 212 (345) T protein:vir:37 135 GGYSYL--MKKSLYDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYST 212 (345) T ss_pred CCeeEE--EeeeeeccCceEEEEccccEEEEcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeC Confidence 643332 222223334677889999999999888889999999999999999999999999999999999999999876 Q ss_pred -ccCCHHHHHHHHHHHHHHhcCcccCCceec-----CCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccc Q lcl|Aclame:pro 229 -GSITEENAKKLKSNWDSGYTGENAGKTAIL-----SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQ 302 (454) Q Consensus 229 -~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~ 302 (454) ..+++++.++++++|++.+++.|.++++++ ++|+++++++++++|+||++.+++++++||++|||||.++|+.+ T Consensus 213 ~~~l~~e~~~~lk~~~~~~~g~~n~~~~~i~~~~g~~~G~~~~pl~~~~~d~qf~e~k~~~~~dI~~a~~VPp~liGi~~ 292 (345) T protein:vir:37 213 DPDLTEEMEEEIARKISESKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIP 292 (345) T ss_pred CCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceeEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccc Confidence 468999999999999999887777766665 46899999999999999999999999999999999999999865 Q ss_pred c--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhh Q lcl|Aclame:pro 303 P--PSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLR 353 (454) Q Consensus 303 ~--~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~ 353 (454) + ++++|+|++.+.|++++|.|+++.|++++|+.+..+....++|+..+|++ T Consensus 293 ~~t~~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~~e~~~~~~i~F~~~~l~k 345 (345) T protein:vir:37 293 TNTGGLGDPLKYREVYHYDEVMPLQEIIAETINQDPEIKNLLKIKFREQNFAK 345 (345) T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcceEEECchhhcC Confidence 4 56899999999999999999999999999986655567889999999988 No 96 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=100.00 E-value=3.9e-54 Score=313.38 Aligned_cols=334 Identities=14% Similarity=0.064 Sum_probs=239.6 Q ss_pred hhhhccccccccccCcccchhhhhhhhhhccccccCCccc---cHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 5 LRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKA---DPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 5 f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) -++..+++..........-...|.. ++|-.........+ ....+.+-|.-+..+..+ +-.-+.+- . T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~l---~~~~~~h~-------~ 69 (345) T protein:vir:37 1 MKTNVKTDNKKGIVIAPINDRTFSL-NEISASPALDYVGIGFDENYNCYLPPVNRHALAKL---PHQNAQHG-------G 69 (345) T ss_pred CCCCccccchhhcccCcceeEEeec-CCcccccchhhhhhhhcCCccccCCCCCHHHHHHH---hhcccccc-------c Confidence 2222222211111111100001110 11110000000000 000122222222222222 21112110 0 Q ss_pred ceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEeccc Q lcl|Aclame:pro 82 RRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPDR 161 (454) Q Consensus 82 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~ 161 (454) ....+...+. ..-+||++||..+|++. +.+++++||||++++|+..|.+++|+|+++.+|++..+.+....++ ... T Consensus 70 ~i~~k~n~l~-~~~~Pn~~lt~~~f~~~-~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~~~--~~~ 145 (345) T protein:vir:37 70 ILHSRANMVS-SLYEGGKALSRMDMRAL-CLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVRKDGGYSYLMK--KSL 145 (345) T ss_pred ceeeechHHH-hhccCCCCCCHHHHHHH-HHHHHhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEEeCCeeEEEE--EeE Confidence 0000111222 33579999999999865 5789999999999999999999999999999999988765543333 222 Q ss_pred cccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecC-ccCCHHHHHHHH Q lcl|Aclame:pro 162 NCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIP-GSITEENAKKLK 240 (454) Q Consensus 162 ~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~-~~~s~e~~~~~~ 240 (454) ....+....|++++|||++..++.+++||+|++.++..++.+..++..+++++|+||++|++||.++ ..+++++.++++ T Consensus 146 ~~~~g~~~~~~~~dVihir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NG~~p~~Il~~~d~~l~~e~~~~lk 225 (345) T protein:vir:37 146 YDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTDPDLTEEMEEEIA 225 (345) T ss_pred ecCCceEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEecCCCCCHHHHHHHH Confidence 3345677889999999999888899999999999999999999999999999999999999999886 568999999999 Q ss_pred HHHHHHhcCcccCCceec-----CCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccc--ccccCHHHHH Q lcl|Aclame:pro 241 SNWDSGYTGENAGKTAIL-----SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP--PSSDNVEALE 313 (454) Q Consensus 241 ~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~--~~~~n~e~~~ 313 (454) ++|++..++.|.++++++ ++|++++|++++++|+||+|.+++++++||++|||||.++|+.++ ++++|+|++. T Consensus 226 ~~~~~~~g~~n~~~~~i~~p~g~~~G~~~~pls~~~~d~qf~e~k~~~~~dIa~a~~VPp~llGi~~~~~~~~~~~e~~~ 305 (345) T protein:vir:37 226 RKISESKGVGNFRSMFVNIANGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYR 305 (345) T ss_pred HHHHHhcCcccccceEEEcCCCcccceEEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCccCCCCCCcccHHHHH Confidence 999997766788888877 579999999999999999999999999999999999999998654 5689999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhh Q lcl|Aclame:pro 314 QQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLR 353 (454) Q Consensus 314 ~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~ 353 (454) +.|++++|.|+++.|++++|+.+..+....++|+-.+|.+ T Consensus 306 ~~f~~~~l~P~~~~ie~~ln~~~~~~~~~~i~F~~~~L~~ 345 (345) T protein:vir:37 306 EVYHYDEVMPLQEIIAETINQDPEIKNLLKIKFREQNFAK 345 (345) T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCcceEEecchhhcC Confidence 9999999999999999999986655666778888888766 No 97 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=100.00 E-value=5.9e-54 Score=312.39 Aligned_cols=316 Identities=13% Similarity=0.118 Sum_probs=237.2 Q ss_pred hhhhccccccccccC--------------cccchhh---------hhhhhhhccccccCCccccH----HHHHhhHHHHH Q lcl|Aclame:pro 5 LRRTRKNQKSGRDVR--------------EAGWTSL---------FQAVAEPFAGAWQQGVKADP----EAVLSFHAVFA 57 (454) Q Consensus 5 f~r~~~~~~~~~~~~--------------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~ 57 (454) -++++..++...... ...|++. ++.....+.+.+- ..+++. +.+..++...+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~-~pp~~~~~la~~~~~~~~h~~ 79 (351) T protein:vir:78 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWF-EPPVSFAGLAKSFRASTHHSS 79 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhccCcee-cCCCCHHHHHHHHhhhHhhhh Confidence 222222111111000 0011110 1111111111000 011222 11112333334 Q ss_pred HHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEE Q lcl|Aclame:pro 58 CISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRI 137 (454) Q Consensus 58 ~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~ 137 (454) ||...++.+++ .-+||++||..+|++. +.+++++||+|++++|+..|.+++|+| T Consensus 80 ~l~~k~n~l~~-------------------------~~~Pn~~~t~~~f~~~-~~d~ll~Gnay~~~~rn~~G~~~~L~p 133 (351) T protein:vir:78 80 ALFFKANVLAS-------------------------TFRPHRWLSRHAFERW-ALDFLTFGNGYLERRRNMVGGTLRLEP 133 (351) T ss_pred hhhhhhhHHhh-------------------------cccCCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCCEEEEEE Confidence 43332222211 3479999999999755 568899999999999999999999999 Q ss_pred ecCcceEEEECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 138 LDWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRN 217 (454) Q Consensus 138 l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~n 217 (454) +++.+|++..+.++ |.+.. ..+..+.|++++|||++..++.+++||+|++.++..++.+..++..+++++|+| T Consensus 134 l~~~~v~~~~~~~~---~~~~~----~~~~~~~~~~~eVihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~N 206 (351) T protein:vir:78 134 ALAKYVRRKADFSG---FVYVN----GWQERHEFAPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYEN 206 (351) T ss_pred ecCcceEEeeeCCe---EEEEe----cCCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 99999999887764 22221 234668899999999999888999999999999999999999999999999999 Q ss_pred cCCcceeEecC-ccCCHHHHHHHHHHHHHHhcCcccCCceec-----CCCceeeeccccchhhHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 218 GGRPSGVIEIP-GSITEENAKKLKSNWDSGYTGENAGKTAIL-----SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVF 291 (454) Q Consensus 218 g~~p~~~l~~~-~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~f 291 (454) |++|++||.++ ..+++++.++++++|++..+..|+++++|+ ++|++++|++++++|+||+|.+++++++||++| T Consensus 207 Ga~pggIl~~~~~~ls~e~~~~lr~~~~~~~G~~N~~~~~v~~~~g~~~g~k~~pls~~~~d~qf~e~k~~~~~eIa~a~ 286 (351) T protein:vir:78 207 GSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAH 286 (351) T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcccccceeeecCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHh Confidence 99999999886 468999999999999987666899999987 468999999999999999999999999999999 Q ss_pred ccchhhhccccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHH Q lcl|Aclame:pro 292 RVPAYKIGVGQP--PSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSER 358 (454) Q Consensus 292 gvp~~~lg~~~~--~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~ 358 (454) ||||.++|+.++ ++++|+|++.+.|++++|.|+++.|++ +|.+|.. ..++|+...|++.|.++ T Consensus 287 ~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~P~~~~iee-~n~~l~~---~~~~F~~~~Llr~d~ka 351 (351) T protein:vir:78 287 RVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLGD---EVVRFDDYEIPPAPVAA 351 (351) T ss_pred CCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcCc---cceecChhhhccccccC Confidence 999999998765 458999999999999999999999985 6766632 25899999999999887 No 98 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=100.00 E-value=3.6e-54 Score=313.61 Aligned_cols=321 Identities=13% Similarity=0.157 Sum_probs=229.4 Q ss_pred hhhhccccccccccC-----------cccchhhhhhhhhhccccccCCccc-cHHHHHhhHHHHHHHH---------HHH Q lcl|Aclame:pro 5 LRRTRKNQKSGRDVR-----------EAGWTSLFQAVAEPFAGAWQQGVKA-DPEAVLSFHAVFACIS---------LIS 63 (454) Q Consensus 5 f~r~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~i~---------~ia 63 (454) -+|+++...+..... ..+-...|.. ++| .+| +....+.-..++.|-+ -+| T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p--------~~v~~~~~~~~y~~~~~~~~~~~pp~~~~~la 71 (350) T protein:vir:11 1 MSKRRSHRRQQPVTVQSAQEGEFIPRQGGRAEAFTF-GDP--------MPVLDGRGILDYLECWPNGRWYEPPLSMEGLA 71 (350) T ss_pred CCccccCCCcCccccCCcchhhhccccccceEEEEe-CCc--------eeecCcchhhHHHHHhhcCccccCCCCHHHHH Confidence 232222211100000 0000011110 000 000 0110111111111111 012 Q ss_pred HhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcce Q lcl|Aclame:pro 64 QDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRV 143 (454) Q Consensus 64 ~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~ 143 (454) +.+-..+.+- .....+.. ......+||+++|..+|++ ++.+++++||||++++|+..|++++|+|+++.+| T Consensus 72 ~~~~~~~~h~-------~~l~~k~n-~l~~~~~Pn~~~t~~~f~~-~v~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~v 142 (350) T protein:vir:11 72 KSVGSSVYLQ-------SGLKFKRN-MLAKTFIPHRLLSRATFEQ-FSLDWLTFGSAYLEQPRSRLGTRMPLQAPLAKYM 142 (350) T ss_pred HHHhhhhhhc-------cchhhhhh-hhhhcccCCCCCCHHHHHH-HHHHHHhcCCeEEEEEEcCCCCEEEEEEeCCcee Confidence 2211111110 00000011 1112348999999999986 5678999999999999999999999999999999 Q ss_pred EEEECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcce Q lcl|Aclame:pro 144 EPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSG 223 (454) Q Consensus 144 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~ 223 (454) ++..+.+. +|.+. ..+..+.|++++|||++..++.+++||+||+.++..++.+..++..+.+++|+||++|++ T Consensus 143 r~~~~~~~--~~~~~-----~~~~~~~~~~~eVihir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~~~g 215 (350) T protein:vir:11 143 RRGTDLET--FYQVR-----SWKDEHEFEKGSVIQLREADINQEIYGVPEWFCALQSALLNESATLFRRKYYNNGSHAGF 215 (350) T ss_pred EeeecCCe--EEEEe-----eCCeEEEECcccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCce Confidence 98776543 33332 234568899999999999888999999999999999999999999999999999999999 Q ss_pred eEecCc-cCCHHHHHHHHHHHHHHhcCcccCCceec-----CCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhh Q lcl|Aclame:pro 224 VIEIPG-SITEENAKKLKSNWDSGYTGENAGKTAIL-----SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYK 297 (454) Q Consensus 224 ~l~~~~-~~s~e~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~ 297 (454) ||.++. .+++++.+++++.|++..++.|+++++|+ ++|+++++++++++|+||+|.+++++++||++|||||.+ T Consensus 216 il~~~~~~ls~e~~~~l~~~~~~~~G~~N~~~~~v~~~~g~~~g~~~~pl~~~~~d~qf~e~k~~~~~eIa~a~~VPp~l 295 (350) T protein:vir:11 216 ILYMTDAAQNEEDIDALRTALKTAKGPGNFRNLFVYAPNGKKEGIQLIPVSEVAAKDEFGSIKNISRDDQLAGLRVYPQL 295 (350) T ss_pred EEEecCCCCCHHHHHHHHHHHHHhcCccccCceeeecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHH Confidence 999874 68999999999999998777899999887 468999999999999999999999999999999999999 Q ss_pred hccccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhh Q lcl|Aclame:pro 298 IGVGQP--PSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTL 351 (454) Q Consensus 298 lg~~~~--~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l 351 (454) +|+.++ ++++|+|++.+.|++++|.|+++.|++ +|.+|.....+...|++.+| T Consensus 296 lGi~~~~t~~~sn~e~~~~~f~~~~L~P~~~~ie~-ln~~l~~~~~~F~~~~~~~l 350 (350) T protein:vir:11 296 MGVVPQNAGGFGSISDAAAVWASLELAPMQTRLQQ-VNEMIGEEVVRFAQFDAPGL 350 (350) T ss_pred hcccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH-HHhhcCccccccCcccccCC Confidence 998765 568999999999999999999999985 88888655444445677777 No 99 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=100.00 E-value=3e-53 Score=308.51 Aligned_cols=326 Identities=15% Similarity=0.133 Sum_probs=234.3 Q ss_pred CcchhhhhccccccccccCcccchhhhhhh-hhh-ccccccCC-c-cccHHHHHhhHHHHHHHHHHHHhhccc--ceEEE Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAV-AEP-FAGAWQQG-V-KADPEAVLSFHAVFACISLISQDIAKM--RLRLM 74 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~-~-~~~~~~~~~~~~v~~~i~~ia~~va~~--~~~~~ 74 (454) |- +|+.+... .......+-...|... ..+ +.+..... . ......+++.|+-+..+..+.++-+.. ++.+. T Consensus 1 m~---~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~a~~~h~s~i~~k 76 (340) T protein:vir:98 1 MS---KRKPRKAV-AMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVK 76 (340) T ss_pred CC---CCCCCccc-cccccCccceeEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHHhccccchhhhhh Confidence 33 33222111 1111111111111110 000 10100000 0 000011222233233332222111110 11110 Q ss_pred eccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCcee Q lcl|Aclame:pro 75 QTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVF 154 (454) Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~ 154 (454) ...+ .-.-+||+++|..+|++ ++.+++++||+|++++|+..|.+++|+|+++.+|++..+.+ .+ T Consensus 77 ------------~n~l-~~~~~Pn~~lt~~~f~~-~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~~~~--~~ 140 (340) T protein:vir:98 77 ------------RNVL-ASTYIPHPLLSRQDFSR-FALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS--VF 140 (340) T ss_pred ------------hhHH-hhccCCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceEEEcccCc--EE Confidence 0011 11348999999999975 55789999999999999999999999999999999866543 34 Q ss_pred eEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCc-cCCH Q lcl|Aclame:pro 155 YRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPG-SITE 233 (454) Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~-~~s~ 233 (454) |.+.. .+..+.|++++|||++..++.+++||+|++.++..++.+..++..+++++|+||++|++||.++. .+++ T Consensus 141 ~~~~~-----~~~~~~~~~~eViHir~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~pg~il~~~~~~ls~ 215 (340) T protein:vir:98 141 WFVEN-----FTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSA 215 (340) T ss_pred EEEec-----CCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCH Confidence 44432 34567899999999998888899999999999999999999999999999999999999998874 6899 Q ss_pred HHHHHHHHHHHHHhcCcccCCceec-----CCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccc--ccc Q lcl|Aclame:pro 234 ENAKKLKSNWDSGYTGENAGKTAIL-----SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP--PSS 306 (454) Q Consensus 234 e~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~--~~~ 306 (454) ++.++++++|++..+..|.++++|+ ++|+++++++.+++|+||++++++++++||++|||||.++|+.++ +++ T Consensus 216 e~~~~lk~~~~~~~G~~n~~~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~ 295 (340) T protein:vir:98 216 TDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSL 295 (340) T ss_pred HHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCcc Confidence 9999999999987656789999888 578999999999999999999999999999999999999998654 468 Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcC Q lcl|Aclame:pro 307 DNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMD 355 (454) Q Consensus 307 ~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d 355 (454) +|+|++.+.|++++|.|+++.||+ +|.+|..+ .++|+...+++.| T Consensus 296 sn~e~~~~~f~~~~l~Pl~~~iee-~n~~L~~e---~~rF~~~~l~~~d 340 (340) T protein:vir:98 296 GDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME---VIRFKEYTLDNPE 340 (340) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-HHhccccc---ccccCccccccCC Confidence 999999999999999999999995 88887543 3789888999988 No 100 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=100.00 E-value=5.9e-53 Score=306.93 Aligned_cols=320 Identities=13% Similarity=0.094 Sum_probs=234.0 Q ss_pred hhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHH---hhcccceEEEecccccc Q lcl|Aclame:pro 5 LRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQ---DIAKMRLRLMQTDAQGI 81 (454) Q Consensus 5 f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~---~va~~~~~~~~~~~~~~ 81 (454) -++.++++......... ..|. |+.+ .+ .+...++..|+...-. ..-..|+....-.+ - T Consensus 1 m~~~~~~~~~~~~~~~~---~~~~-----~~~p----~~-----~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~La~--l 61 (337) T protein:vir:78 1 MTKRQQQPAQAAASSPR---PSVV-----FSMP----EA-----IDPTAWMTDYTGVFYNPYGEYYQPPIDRKGLAK--V 61 (337) T ss_pred CCCcccCcccccccCce---eEEE-----ecCc----cc-----ccCcchhHhhhhhhhccCcceecCCCCHHHHHH--H Confidence 22222222111111111 0111 1111 11 1122223334333322 22223332210000 0 Q ss_pred ceehhhhHHHHhhhhccccCCH----HHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEE Q lcl|Aclame:pro 82 RRETRRGDIARLCRRPNAQQNR----IQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRI 157 (454) Q Consensus 82 ~~~~~~~~~~~l~~~pn~~~~~----~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~ 157 (454) .....+| ...+..+||+.+++ .++++.++.|++++||||++++|+..|++++|+|+++.+|++..+ +..+|.+ T Consensus 62 ~~~~~~h-~~~L~~k~N~~~~~f~~~~~~~~~~~~d~ll~GNay~~~~rn~~G~~~~L~pl~~~~v~~~~d--~~~~~~~ 138 (337) T protein:vir:78 62 ARANAHH-GAILMARRNMVAGRFTNQRATITAFVHNYLQFGDGGLLKLRNSFGQVVGLHPLSSVYLRRRED--GCFVYLQ 138 (337) T ss_pred hhcchhh-hhHHHhhhccccccCcCcHHHHHHHHHHHHhhCCeEEEEEECCCCcEEEEEEeCCceeEeeeC--CeEEEEE Confidence 0011111 23456799987654 478999999999999999999999999999999999999987764 3333322 Q ss_pred eccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCc-cCCHHHH Q lcl|Aclame:pro 158 TPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPG-SITEENA 236 (454) Q Consensus 158 ~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~-~~s~e~~ 236 (454) . .+....|++++|||++..++.+++||+||+.+++.++.+..+++.+++++|+||++|++||.+++ .+++++. T Consensus 139 ~------~~~~~~~~~~eIiHik~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~p~~il~~~~~~l~~e~~ 212 (337) T protein:vir:78 139 Q------GKPNLIYRPDDVIWLAQYDPEQQVYGMPDYLGGLQSALLNQDATLFRRRYFLNGAHMGFIFYATDPNMDDDTE 212 (337) T ss_pred c------CCceEEECCccEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeEEcCCCCCCHHHH Confidence 1 24567899999999998888899999999999999999999999999999999999999998765 6899999 Q ss_pred HHHHHHHHHHhcCcccCCceec-----CCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccc---ccccC Q lcl|Aclame:pro 237 KKLKSNWDSGYTGENAGKTAIL-----SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP---PSSDN 308 (454) Q Consensus 237 ~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~---~~~~n 308 (454) +++++.|++..++.|.++++++ ++|+++++++++++|+||++++++++++||++|||||.++|+..+ ++++| T Consensus 213 ~~lk~~~~~~~G~~n~~~~~v~~~~g~~~Gi~~~pis~~~~d~qfle~k~~s~~eIa~a~~VPp~llGi~~~~~~~~~~n 292 (337) T protein:vir:78 213 EEMKEMIANSKGVGNFRSMFVNIPDGKPDGIKLIPVGDIATKDEFAAIKGITAQDVLTAHRYPPALAGIIPTNGGGGLGD 292 (337) T ss_pred HHHHHHHHHhcCcccccceEEEcCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcccccCCCcCcccc Confidence 9999999987666788888887 578999999999999999999999999999999999999997543 56789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc-ceeeecchhhh Q lcl|Aclame:pro 309 VEALEQQYYSQCLQTLIESIELLLDEALETGEN-ESTEFDVTTLL 352 (454) Q Consensus 309 ~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~-~~~~f~~~~l~ 352 (454) +|++...|++++|.|+++.||+++|+++++... ..++++...++ T Consensus 293 ~e~~~~~f~~~~L~P~~~~ie~~~n~~ll~~~~~~~f~~~~~~~~ 337 (337) T protein:vir:78 293 PEKYDATYARNEVLPLCELVQDAINSAGLPRALWVTFRETIGAAV 337 (337) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhceeccccccccC Confidence 999999999999999999999999998886543 34555566666 No 101 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=100.00 E-value=1.6e-52 Score=304.56 Aligned_cols=324 Identities=14% Similarity=0.134 Sum_probs=228.4 Q ss_pred hhhhcccccc---ccccCcccchhhhhh-hhhhccccccCCccccHH-----HHHhhHHHHHHHHHHHHhhc--ccceEE Q lcl|Aclame:pro 5 LRRTRKNQKS---GRDVREAGWTSLFQA-VAEPFAGAWQQGVKADPE-----AVLSFHAVFACISLISQDIA--KMRLRL 73 (454) Q Consensus 5 f~r~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~i~~ia~~va--~~~~~~ 73 (454) .+|+++++.. .......+-...|.. -..+.... +...-..+ .+.+=|+-+..+..+.++-+ +-++.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~--~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~s~i~~ 78 (344) T protein:vir:56 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDR--RDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYV 78 (344) T ss_pred CCCCCCCCCchhhHHhhcCCCceEEEEcCCceeecCc--chhhhHHHhhhcCccccCCCCHHHHHHHHhhhhhhCcccee Confidence 3332222111 010111111111111 00000000 00000000 01111111222222211111 112222 Q ss_pred EeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCce Q lcl|Aclame:pro 74 MQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEV 153 (454) Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~ 153 (454) ++ ..+ ...-+||++||..+| +.++.+++++||||++++|+..|++++|+|+++.+|++..+.+. T Consensus 79 k~------------n~l-~~~~~Pnp~~t~~~f-~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~~-- 142 (344) T protein:vir:56 79 KR------------NIL-ASTFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV-- 142 (344) T ss_pred hh------------hhH-HhhcCCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceeEEeecCCE-- Confidence 10 111 123589999999999 66788999999999999999999999999999999998776643 Q ss_pred eeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCc-cCC Q lcl|Aclame:pro 154 FYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPG-SIT 232 (454) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~-~~s 232 (454) +|.+. ..++.+.|++++|||++..++.+++||+||+.++..++.+..++..+..++|+||++|++||.++. .++ T Consensus 143 ~~~~~-----~~g~~~~~~~~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~d~~ls 217 (344) T protein:vir:56 143 YWWVP-----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQD 217 (344) T ss_pred EEEEe-----cCCeEEEEcCccEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCC Confidence 22222 235678899999999998888899999999999999999999999999999999999999998864 689 Q ss_pred HHHHHHHHHHHHHHhcCcccCCceec------CCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccc--c Q lcl|Aclame:pro 233 EENAKKLKSNWDSGYTGENAGKTAIL------SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP--P 304 (454) Q Consensus 233 ~e~~~~~~~~~~~~~~g~n~g~~~vl------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~--~ 304 (454) +++.++++++|++..+ .++++.++| ++|+++++++++++|+||+|.+++++++||++|||||.++|+.++ + T Consensus 218 ~e~~~~lk~~~~~~~g-~~~~r~l~l~~p~g~~~G~~~~pis~~~~d~qf~e~k~~s~~eIa~afrVPp~llGi~~~~t~ 296 (344) T protein:vir:56 218 RNDIEMLRENMVKSKG-RNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVG 296 (344) T ss_pred HHHHHHHHHHHHHhcC-CCCccceEEecCCCCccceeEEEcCCChHHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCC Confidence 9999999999998764 577888887 479999999999999999999999999999999999999998665 4 Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCH Q lcl|Aclame:pro 305 SSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDS 356 (454) Q Consensus 305 ~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~ 356 (454) +++|+|++.+.|++++|.|+++.|++ +|.+|..+ .++|+--.+...|- T Consensus 297 ~~~n~eq~~~~f~~~tL~Pl~~~ie~-~n~~l~~~---~~~F~~y~l~~~~~ 344 (344) T protein:vir:56 297 SLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQE---VIRFKNYSLDTDNG 344 (344) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH-HHhhhccc---cccCCCccccccCC Confidence 58999999999999999999999985 78887533 24555445544443 No 102 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=100.00 E-value=3.9e-52 Score=302.43 Aligned_cols=328 Identities=16% Similarity=0.135 Sum_probs=228.6 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhh---ccccccCC-cc-ccHHHHHhhHHHHHHHHHHHHh--hcccceEE Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEP---FAGAWQQG-VK-ADPEAVLSFHAVFACISLISQD--IAKMRLRL 73 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~-~~~~~~~~~~~v~~~i~~ia~~--va~~~~~~ 73 (454) |.-.-++...... ........-...|.. ++| +.+.+... .. .....+++-|.-+..+-.+.++ ..+-++.+ T Consensus 1 m~~~~~~~~~~~~-~~~~~~~~~~~~~~f-~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~~ 78 (344) T protein:vir:60 1 MSKKKGKTLQPAA-KKMTASAPKMEAFTF-GEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYV 78 (344) T ss_pred CCcccCCCCCchH-HhhcCCcCcEEEEEc-CCceeecCCcchhHHHHhhhcCccccCCCCHHHHHHHHHhhhhhccchhh Confidence 4332221111110 011111110011111 000 00000000 00 0000011111111111111111 11111111 Q ss_pred EeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCce Q lcl|Aclame:pro 74 MQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEV 153 (454) Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~ 153 (454) + ...+ ...-+||++||..+| +.++.+++++||||++++|+..|++++|+|+++.+|++..+.+. T Consensus 79 k------------~n~l-~~~~~Pn~~~t~~~f-~~~~~d~ll~Gnay~~i~rn~~G~~~~L~~l~~~~vr~~~~~~~-- 142 (344) T protein:vir:60 79 K------------RNIL-ASTFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV-- 142 (344) T ss_pred h------------hhHH-HhhccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCcceEEEeecCCe-- Confidence 1 0111 123489999999999 56788999999999999999999999999999999999877653 Q ss_pred eeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecC-ccCC Q lcl|Aclame:pro 154 FYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIP-GSIT 232 (454) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~-~~~s 232 (454) +|.+. ..+....|++++|||++..++.+++||+||+..+..++.+..++..+..++|+||++|+++|.++ ..++ T Consensus 143 ~~~v~-----~~~~~~~~~~~eIiHir~~~~~~~~yGlsp~~~a~~si~l~~~a~~~~~~~f~NG~~pg~il~~~~~~ls 217 (344) T protein:vir:60 143 YWWVP-----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQD 217 (344) T ss_pred EEEEc-----cCCeEEEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCC Confidence 22222 23466789999999999888889999999999999999999999999999999999999999886 4689 Q ss_pred HHHHHHHHHHHHHHhcCcccCCceec------CCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccc-- Q lcl|Aclame:pro 233 EENAKKLKSNWDSGYTGENAGKTAIL------SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPP-- 304 (454) Q Consensus 233 ~e~~~~~~~~~~~~~~g~n~g~~~vl------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~-- 304 (454) +++.++++++|++.+++ ++++.++| ++|+++++++++++|+||+|.+++++++||++|||||.++|+.++. T Consensus 218 ~e~~~~ik~~~~~~~g~-~~~r~~~l~~p~g~~~g~~~~pis~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~ 296 (344) T protein:vir:60 218 RNDIEMLRENMVKSKGR-NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVG 296 (344) T ss_pred HHHHHHHHHHHHHhcCC-CCCcceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCC Confidence 99999999999998754 56777776 4799999999999999999999999999999999999999986653 Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCH Q lcl|Aclame:pro 305 SSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDS 356 (454) Q Consensus 305 ~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~ 356 (454) +++|+|++...|++++|.|+++.|| +||.+|-. ..++|+...+...|- T Consensus 297 ~~~n~e~~~~~f~~~~L~Pl~~~~e-~ln~~lg~---~~i~F~~~~l~~~d~ 344 (344) T protein:vir:60 297 SLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQ---EVIRFKNYSLDTDNG 344 (344) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH-HHHHhcCC---cccccCccccCCCCC Confidence 5899999999999999999999998 58888732 235677777666665 No 103 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=100.00 E-value=7.4e-52 Score=300.91 Aligned_cols=326 Identities=14% Similarity=0.125 Sum_probs=228.7 Q ss_pred hhhhcccccc-c--cccCcccchhhhhh-hhhh-ccccccCCc-c-ccHHHHHhhHHHHHHHHHH--HHhhcccceEEEe Q lcl|Aclame:pro 5 LRRTRKNQKS-G--RDVREAGWTSLFQA-VAEP-FAGAWQQGV-K-ADPEAVLSFHAVFACISLI--SQDIAKMRLRLMQ 75 (454) Q Consensus 5 f~r~~~~~~~-~--~~~~~~~~~~~~~~-~~~~-~~~~~~~~~-~-~~~~~~~~~~~v~~~i~~i--a~~va~~~~~~~~ 75 (454) .+|+++.+.. . ......+-...|.. -..+ +.+.+.... . ..-..+.+=|.-+..+..+ |+...+-++.+++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~~k~ 80 (344) T protein:vir:20 1 MSKKKGKTPQPAAKTMTASGPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) T ss_pred CCcccCCCCcchhhhhhccCCceEEEEcCCceEecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhhhhCccceehh Confidence 3332222111 0 00001110111110 0000 111100000 0 0000000001111222111 1111122222211 Q ss_pred ccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceee Q lcl|Aclame:pro 76 TDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFY 155 (454) Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~ 155 (454) . .+ ...-+||++||..+| +.++.+++++||||++++|+..|++++|+|+++.+|++..+.+. +| T Consensus 81 -----------n-~l-~~~~~Pn~~lt~~~f-~~~~~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~~~~~--~~ 144 (344) T protein:vir:20 81 -----------N-IL-ASTFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV--YW 144 (344) T ss_pred -----------h-hH-HHhccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCCceeEeeecCCE--EE Confidence 1 11 113489999999999 57788999999999999999999999999999999999876643 22 Q ss_pred EEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecC-ccCCHH Q lcl|Aclame:pro 156 RITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIP-GSITEE 234 (454) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~-~~~s~e 234 (454) .+. ..+..+.|++++|||++..++.+++||+||+.++..++.+..++..++.++|+||++|++||.++ ..++++ T Consensus 145 ~~~-----~~~~~~~~~~~eIiHir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~p~~Il~~~d~~l~~e 219 (344) T protein:vir:20 145 WVP-----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRN 219 (344) T ss_pred EEc-----cCCeEEEEcCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHH Confidence 222 23466889999999999888889999999999999999999999999999999999999999876 568999 Q ss_pred HHHHHHHHHHHHhcCcccCCceec------CCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccc--ccc Q lcl|Aclame:pro 235 NAKKLKSNWDSGYTGENAGKTAIL------SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP--PSS 306 (454) Q Consensus 235 ~~~~~~~~~~~~~~g~n~g~~~vl------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~--~~~ 306 (454) +.++++++|++.++ .++++.++| ++|+++++++.+++|+||+|.+++++++||++|||||.++|+.++ +++ T Consensus 220 ~~~~ik~~~~~~~g-~~n~r~l~l~~p~g~~~gi~~~pis~~~~d~qf~e~k~~s~~eIa~af~VPp~llGi~~~~t~~~ 298 (344) T protein:vir:20 220 DIEMLRENMVKSKG-RNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSL 298 (344) T ss_pred HHHHHHHHHHHhcC-CCCccceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCcc Confidence 99999999999765 456777776 469999999999999999999999999999999999999998664 458 Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCH Q lcl|Aclame:pro 307 DNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDS 356 (454) Q Consensus 307 ~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~ 356 (454) +|+|++.+.|++++|.|+++.|+ ++|.+|.. ..++|+...+...|. T Consensus 299 ~n~e~~~~~f~~~~l~P~~~~~e-~in~~lg~---~~i~F~~~~l~~~d~ 344 (344) T protein:vir:20 299 GDIEKVAKVFVRNELIPLQDRIR-EINGWLGQ---EVIRFKNYSLDTDND 344 (344) T ss_pred ccHHHHHHHHHHHHHHHHHHHHH-HHHHhcCC---cccccCccccccCCC Confidence 99999999999999999999998 57877743 236777777766555 No 104 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=100.00 E-value=2.1e-50 Score=292.89 Aligned_cols=249 Identities=14% Similarity=0.198 Sum_probs=201.4 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +.||++..+.... .....+... ...........+..++.+.|+++|+|++||++||+++|++|+++++..+. T Consensus 1 MglF~~~~~r~~~---~~~~~~~~~---~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~iA~lp~~~~~~~~~-- 72 (251) T protein:vir:46 1 MGIFYKNEKRDLQ---YNEDDLQMM---VQTLPSFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQI-- 72 (251) T ss_pred CCccccccccccC---CCccchhhh---hhhhccccCcCcceechhhhhccHHHHHHHHHHHHhHhhCceEEeeCccc-- Confidence 4555443332211 111112111 11112223344667889999999999999999999999999999974432 Q ss_pred ceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceeeEEeccc Q lcl|Aclame:pro 82 RRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPDR 161 (454) Q Consensus 82 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~ 161 (454) ...++.+.+|+.+||++||+.+||+.++.+++++||||++++|+.+|++++|+||+|++|++..+.+|...|+++... T Consensus 73 --~~~~~~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~ 150 (251) T protein:vir:46 73 --NYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRID 150 (251) T ss_pred --cccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCceEEEEECCCCcEEEEEEEec Confidence 234566777778999999999999999999999999999999999999999999999999999999998888877665 Q ss_pred cccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCC-HHHHHHHH Q lcl|Aclame:pro 162 NCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSIT-EENAKKLK 240 (454) Q Consensus 162 ~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s-~e~~~~~~ 240 (454) ....+....++++||||++.. +.++++|+||+..+..+|.+..++++++.++|+||++|+++|++++.++ +++.++++ T Consensus 151 ~~~~g~~~~~~~~diiH~r~~-~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~~e~~~~~~ 229 (251) T protein:vir:46 151 SNGNNIERNVKFEDMLDIKFY-SLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAR 229 (251) T ss_pred cCCcceeEEECCccEEEecCc-CCCCeeecCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcEEEEeCCCCCCHHHHHHHH Confidence 555667789999999999975 5789999999999999999999999999999999999999999998875 56789999 Q ss_pred HHHHHHhcC-cccCCceecCCCcee Q lcl|Aclame:pro 241 SNWDSGYTG-ENAGKTAILSNGAKY 264 (454) Q Consensus 241 ~~~~~~~~g-~n~g~~~vl~~g~~~ 264 (454) +.|++.++| +|+|++++ |++- T Consensus 230 ~~~~~~~~g~~n~g~~~~---gm~~ 251 (251) T protein:vir:46 230 EEFPKVLVELNKLGKLSY---SMNQ 251 (251) T ss_pred HHHHHHhcCccccccccc---ccCC Confidence 999999988 68888665 3332 No 105 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=100.00 E-value=1e-45 Score=267.30 Aligned_cols=211 Identities=14% Similarity=0.112 Sum_probs=182.2 Q ss_pred EEECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCccee Q lcl|Aclame:pro 145 PLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGV 224 (454) Q Consensus 145 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~ 224 (454) +....+|...|.+........+....++++||||+|...+.++++|+||+.+++.+|....++.+|+.++|+||++|++| T Consensus 1 ~r~~~dg~~~y~~~~~~~~~~g~~~~~~~~eilH~r~~~~~~~~~Glspi~~a~~~i~~~~aa~~~~~~~f~Ng~~p~gi 80 (219) T protein:vir:98 1 MRVCKDGNYKYLMKKSLYDTKSEIYEYNKNDVIFIKLYDPMQQVYGSPDYVGGITSALLNSDATIFRRRYYSNGAHMGFI 80 (219) T ss_pred CceeecCeEEEEEecceecCCceeEEeccccEEEecCCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceE Confidence 34445566676665554445567788999999999988889999999999999999999999999999999999999999 Q ss_pred EecCc-cCCHHHHHHHHHHHHHHhcCcccCCceec-----CCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhh Q lcl|Aclame:pro 225 IEIPG-SITEENAKKLKSNWDSGYTGENAGKTAIL-----SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKI 298 (454) Q Consensus 225 l~~~~-~~s~e~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l 298 (454) |.++. .+++++++++++.|++..++.|+++++|+ ++|++|++++++++|+||+|++++++++||++|||||++| T Consensus 81 l~~~~~~l~~e~~~~~~~~~~~~~g~~n~~~~~l~~~gg~~~G~~~~~~~~~~~d~qfle~rk~~~~eIa~~fgVPp~~l 160 (219) T protein:vir:98 81 LYSTDPDMTEEMEDEIAERIRDSKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGQKDEFANIKNISAQDVLTSHRFPPGLS 160 (219) T ss_pred EEeCCCCCCHHHHHHHHHHHHHhcCcccccceeEecCCCCccceeEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHc Confidence 98765 68999999999999987766777776666 5689999999999999999999999999999999999999 Q ss_pred cccc--cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcC Q lcl|Aclame:pro 299 GVGQ--PPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMD 355 (454) Q Consensus 299 g~~~--~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d 355 (454) |+.+ +++++|+|++...|+++||.|+++.||++||++++.+....++|+.+.+...+ T Consensus 161 G~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~~~~~~~~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 161 GIIPVNTAGLGDPLKIREAYQADEVLPLQEIIAESINSDYEIKSALKVNFKQPEKRDKN 219 (219) T ss_pred ccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccEEeecCcccccCC Confidence 9754 45799999999999999999999999999999877777777777755543333 No 106 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.96 E-value=7.6e-30 Score=180.22 Aligned_cols=390 Identities=12% Similarity=0.076 Sum_probs=230.4 Q ss_pred Ccchhhhh---ccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecc Q lcl|Aclame:pro 1 MWNLLRRT---RKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTD 77 (454) Q Consensus 1 m~n~f~r~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~ 77 (454) +.+-|... .+++. ...+. .+..+..... ..-...|.+++.++++|+.+|+++.+.++.+... T Consensus 3 ~~D~~~~~~~~~g~~~------~~~~~-------~~~~~~~~~~-~~l~a~Y~~~~l~~~~vd~~a~d~~r~~~~i~~~- 67 (437) T protein:vir:52 3 FFDGIKSLALKLGSKQ------EQTYY-------SPSLSLTDDL-VQLEALWRDNWIANKVCIKRPEDMVRNWREIYSN- 67 (437) T ss_pred hhhhhHhHHhcCCCcc------cccee-------ecCccccccH-HHHHHHHHhCchhhHHhhcchHHhhcCCceEecC- Confidence 11111110 00000 00000 0000001111 1112457789999999999999999999998531 Q ss_pred ccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC---------CCceeEEEEecCcceEEEEC Q lcl|Aclame:pro 78 AQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA---------RGQIKELRILDWNRVEPLVA 148 (454) Q Consensus 78 ~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~---------~G~~~~l~~l~~~~~~~~~~ 148 (454) +... . .-..+...+.+=+ ..+-+..++.+.-++|.++++++.++ .|.+..+.+++++.+++... T Consensus 68 -d~~~-~-~~~~~~~~~~~l~----~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~~~~~~~~~v~~~~~v~~~~~ 140 (437) T protein:vir:52 68 -DLNS-K-QLDLFTKFERSLK----LRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKPTERLKRLIILPKWKISPTGT 140 (437) T ss_pred -CCCH-H-HHHHHHHHHHhhc----HHHHHHHHHHhcccccceEEEEEecCCCcccccccCCceeEEEEechhhcccccc Confidence 1111 1 1111222223222 23344444555568999999998765 36788999999998885322 Q ss_pred CC--------Cce-eeEEeccccccccceeEEehhheEEeec---CCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 149 DD--------GEV-FYRITPDRNCGITEAVTVPAREVIHDRF---NCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFR 216 (454) Q Consensus 149 ~~--------g~~-~~~~~~~~~~~~~~~~~~~~~~vih~~~---~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ 216 (454) .+ |.. .|.+ ...+..+.++++.+|||.. +.+.+.++|.|+++.+.+.|.....+.......+. T Consensus 141 ~~~dp~s~~fg~p~~y~v-----~~~~~~~~iH~SRii~~~~~~~~~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~ 215 (437) T protein:vir:52 141 KDDDVLSPNFGRYSEYSI-----LGGSQSITVHHSRLIILNANDAPLSDNDIWGVSDLEKIIDVLKRFDSASVNVGDLIF 215 (437) T ss_pred ccccccccccCcceEEEE-----ecCCcceeEccceeEEecCccCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHH Confidence 21 222 2222 2234456799999999963 33557778999999999999999999999999888 Q ss_pred ccCCcceeEecCc---cCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 217 NGGRPSGVIEIPG---SITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRV 293 (454) Q Consensus 217 ng~~p~~~l~~~~---~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgv 293 (454) +...+. ++++. .++....+.+.+.++....+.+.+++++++.+.+++.++.+..+. .+.......+||++++| T Consensus 216 ~~~~~v--~k~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~sgl--~~~l~~~~~~iaaa~~i 291 (437) T protein:vir:52 216 ESKIDI--FKIAGLSDKIAAGMENEVASVISAVQEIKSATNSLLLDAENEYDRKELTFTGL--KDLLTEFRNAVAGAADM 291 (437) T ss_pred HcCCCc--eecchHHHHhcCCcHHHHHHHHHHHHHhcCCCceEEEcCCcceEEEecCcCCH--HHHHHHHHHHHHHHhcC Confidence 765554 33432 222222233333333333334567889999888999988777654 46778889999999999 Q ss_pred chhhhcccccccccCHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHH------ Q lcl|Aclame:pro 294 PAYKIGVGQPPSSDNVEALEQQYYS-------QCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRM------ 360 (454) Q Consensus 294 p~~~lg~~~~~~~~n~e~~~~~~~~-------~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~------ 360 (454) |...|.+...+..++.++..++|+. .-+.|+++.+-..|-+..+.+....+.|+|..|...+.++++ T Consensus 292 P~t~L~G~s~~Glasge~D~~~yyd~i~~~Qe~~l~p~le~l~~~i~~~~~g~~~~~~~~~f~pL~~~s~kekae~~~~~ 371 (437) T protein:vir:52 292 PVTILFGQSVSGLASGDEDIQNYHEAIRRLQETRLRPIFEIIDPLICNELFGGLPADWWFEFVPLTTVKQEQQINMLNTF 371 (437) T ss_pred chhhhcCcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCcCCcCHHHHHHHHHHH Confidence 9988866666667888888888876 457777777777666655544444577888888777765544 Q ss_pred -HHHHHHHhCCCcCHHHHHHHhc----CCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccc Q lcl|Aclame:pro 361 -KTLGDAVKNTLLTPNEARKREN----LPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKA 435 (454) Q Consensus 361 -~~~~~~~~~g~~T~NE~R~~~g----~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 435 (454) +++.+++++|+++++|+|+++. ++.+++.+..-. .......+...+ .+..+.+..+ T Consensus 372 a~a~~~~~~~g~i~~~e~r~~L~~~g~~~~i~~~~~~~~-------------~~~~~~~~~~~~---~~~~~~~~~~--- 432 (437) T protein:vir:52 372 ATAANTLIQNGVLNEYQIANELRESGLFANISAEHIEEL-------------KNADEFAGNFEE---PEKMEGAQVQ--- 432 (437) T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCccccccc-------------cCCCCCCCccCC---CCCCCCCCCC--- Confidence 5588889999999999999873 222332211100 000000000000 0000000000 Q ss_pred ccccc Q lcl|Aclame:pro 436 ITETE 440 (454) Q Consensus 436 ~~~~~ 440 (454) .+.++ T Consensus 433 ~~~~~ 437 (437) T protein:vir:52 433 NSEDQ 437 (437) T ss_pred CCCCC Confidence 11111 No 107 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.94 E-value=4.2e-27 Score=165.18 Aligned_cols=424 Identities=13% Similarity=0.097 Sum_probs=229.9 Q ss_pred Ccchhhhhccccccc---cc--cCcccch--------------------------hhh---h----hhhhh--------c Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSG---RD--VREAGWT--------------------------SLF---Q----AVAEP--------F 34 (454) Q Consensus 1 m~n~f~r~~~~~~~~---~~--~~~~~~~--------------------------~~~---~----~~~~~--------~ 34 (454) ||.||+|+...+... .. .....+. .+. . .+... + T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~ 80 (537) T protein:vir:10 1 MFKFWRKKTVEAVQSSIAERIEPRVGIFGAGDDEKPFTRAQLVHQTMMAIRDHAIAMMPKVDGSHPDMAMDGLDVEGGTF 80 (537) T ss_pred CCCccccccccccccccccccccccCCCcccchhhHHHHHHhhhhccCCCCCccCcccccccccccchhccccccchhhh Confidence 999998765221110 00 0000000 000 0 00000 0 Q ss_pred ---ccc---------ccCCcc---ccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccc Q lcl|Aclame:pro 35 ---AGA---------WQQGVK---ADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNA 99 (454) Q Consensus 35 ---~~~---------~~~~~~---~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~ 99 (454) .+. +..... -....|.+++.++++|+.+|+++.+-++.+...+++....... ..+...+.+ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~r~iVd~~A~d~~r~~~~i~~~~~~~~~~~~~-~~l~~~~~~--- 156 (537) T protein:vir:10 81 SAYANPNLSEGLVLWYAQQAFIGHQMCALIATHWLVNKACSQMPRDAMRKGYKIISDDGNELDPKDA-KFIDRYDRA--- 156 (537) T ss_pred hhhccccccchhhhhccccCCccHHHHHHHHhCchhhhhhhhhhHHhhcCCceeecCCcccccHHHH-HHHHHHHHH--- Confidence 000 000000 1123466899999999999999999999986433322221111 112222222 Q ss_pred cCCHHHHHHHHHHHHHHhCCeEEEEe-eCCC---------------CceeEEEEecCcceEEEEC----CC--CceeeEE Q lcl|Aclame:pro 100 QQNRIQFFELWLNAKLRHGNTVVLKI-RNAR---------------GQIKELRILDWNRVEPLVA----DD--GEVFYRI 157 (454) Q Consensus 100 ~~~~~~f~~~~~~~~ll~G~~~i~~~-r~~~---------------G~~~~l~~l~~~~~~~~~~----~~--g~~~~~~ 157 (454) ...+..|.+ ++.+..++|.+++++. ...+ |....|.+++|..+++... .+ ...++.. T Consensus 157 l~~~~~l~~-a~~~~rlyG~~~i~i~v~~~D~~~~~~Pl~~~~i~kg~~k~l~vidp~~~~~~~~~~~~~dp~sp~fg~P 235 (537) T protein:vir:10 157 FNIKKHAIQ-FVRKGRIFGIRIALFKVDSPDPYYYEKPFNIDGVMPGAYKGIVQIDPYWCAPLLDAQASSNPVSMHFYEP 235 (537) T ss_pred hhHHHHHHH-HHHhcccccceEEEEeecCcCCcccccccccccccccceeEEEEechhhcccccchhhhccCCccccCCc Confidence 222333444 4444566899888764 2222 2346788888887776431 11 1111111 Q ss_pred eccccccccceeEEehhheEEeecC------CCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccC Q lcl|Aclame:pro 158 TPDRNCGITEAVTVPAREVIHDRFN------CFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI 231 (454) Q Consensus 158 ~~~~~~~~~~~~~~~~~~vih~~~~------~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~ 231 (454) ..+. .....+.++.||||... .+...++|.|.++.+...|.....+.......+.......+.+.....+ T Consensus 236 ~~y~----v~g~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~v~k~~~~~~l 311 (537) T protein:vir:10 236 TYWL----INGKKYHRSHLAIYINDEVVDFLKPSYIYGGVPLPQQIMERVYAAERTANEGPMLAMTKRQTVLKVDAAQVL 311 (537) T ss_pred eeee----ecCeEecceeEEEecCCCCchhhhcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeechHHhh Confidence 1110 11246788999998533 2334568999999999999999999999999888877665444333333 Q ss_pred CHHHHHHHHHHHHHHhcCcccCCceecCC-CceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhh-cccccccccCH Q lcl|Aclame:pro 232 TEENAKKLKSNWDSGYTGENAGKTAILSN-GAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKI-GVGQPPSSDNV 309 (454) Q Consensus 232 s~e~~~~~~~~~~~~~~g~n~g~~~vl~~-g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l-g~~~~~~~~n~ 309 (454) +.+ +.+.+++.....+.+..++++++. +.++..++.+..++ -+.+....+.||.+.|||...| |..-.+..++. T Consensus 312 ~~~--~~~~~r~~~~~~~r~n~g~~~id~e~e~~e~~~~~lsgl--~~~l~~~~~~iAa~~~IP~t~L~G~sp~GlnatG 387 (537) T protein:vir:10 312 ANK--QQFDETMSWWTATRDNYQVRVVDKDNEDVVQIDTTLNDL--DKVIMNQYQLVCAIARTPAPKMLGTVPTGFNSTG 387 (537) T ss_pred cCH--HHHHHHHHHHHhhcCCcceeEecCCCceeEEEeccCCCH--HHHHHHHHHHHHhhhCCCceeeccCCccccccch Confidence 322 223333433333333445677765 58888877666654 5677888889999999999955 54334444556 Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHH-------HHHHHHhCCCcCHHH Q lcl|Aclame:pro 310 EALEQQYYSQ------CLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMK-------TLGDAVKNTLLTPNE 376 (454) Q Consensus 310 e~~~~~~~~~------~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~-------~~~~~~~~g~~T~NE 376 (454) +....+|+.. .|.|.++.+...+.+..+.+ ...+.|.+..|...|.+++++ ++.+++++|++++|| T Consensus 388 e~D~~~yyd~I~~~Qe~l~p~l~~l~~ll~~~~~~~-~~~~~i~f~pL~~~s~kEkAei~~~~a~a~~~~~~~G~i~~~E 466 (537) T protein:vir:10 388 DYEEASYHEECESTQDDMRPLIDRHHQLVCRSHLRK-RIRVKVEFPPMDAPKESERADTFLKKMQAAKLAFEMGAVDGVD 466 (537) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CcceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH Confidence 7677777643 37888888887777666543 446788888998888887665 588999999999999 Q ss_pred HHHHhcCCCCCCccccccccccccccccc-----cc-cccccCCCccC---cccCCCCCCcccCccccccc Q lcl|Aclame:pro 377 ARKRENLPPLAGGDALYLQQQNYSLEALS-----RR-DAREDPFASSG---KTASVPQAVAASDGNKAITE 438 (454) Q Consensus 377 ~R~~~g~~p~~~~d~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~ 438 (454) +|+.++..|..+-+.+.........+... +. .....+....+ .........+..+++.+..+ T Consensus 467 vr~~L~~~~~~g~~~l~~~~~~ed~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 537 (537) T protein:vir:10 467 VNEYLRMDPTLGFTSITPAMRPTDAEDIDVDDEGKPVRIIEDQPAPSEMFGATSSGESANDPRDSGAAFED 537 (537) T ss_pred HHHHHhccCccccccccCCCChhhhhcccCCccCCcCCCCCCCCCccccCCCCccccccCCCccCccccCC Confidence 99999987755433332111110000000 00 00000000000 00000011111111111111 No 108 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.93 E-value=5.1e-26 Score=159.24 Aligned_cols=438 Identities=9% Similarity=0.056 Sum_probs=230.2 Q ss_pred Ccchhhhhcccc-----ccccccCcccch-----hhhh------hhhhh--------cc-ccccCCccccHHHHHhhHHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQ-----KSGRDVREAGWT-----SLFQ------AVAEP--------FA-GAWQQGVKADPEAVLSFHAV 55 (454) Q Consensus 1 m~n~f~r~~~~~-----~~~~~~~~~~~~-----~~~~------~~~~~--------~~-~~~~~~~~~~~~~~~~~~~v 55 (454) -.-.-+.+++++ .++....+.... +..+ +++.. +. .....+. .....|.+++.+ T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~-~l~a~Y~~~~l~ 97 (532) T protein:vir:94 19 QAQRVDAKRATHTSLGLATAHEIDPTAYSPYERNAAQNAMAMDYGLQTGRNGRNALSFVEATSWPGF-PTLALLAQLPEY 97 (532) T ss_pred hHhhhhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccCcccccccccccccccccchH-HHHHHHHcCchh Confidence 000011111110 000000000000 0000 11000 00 0001111 123456789999 Q ss_pred HHHHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC------- Q lcl|Aclame:pro 56 FACISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA------- 128 (454) Q Consensus 56 ~~~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~------- 128 (454) +++|+.+|+++.+-.+++....++..... ....+...+.+= ...+-+..++.+..++|.+++++...+ T Consensus 98 r~~Vd~~aed~~r~~~~i~~~~~~~~~~~-~~~~i~~~~~~l----~v~~~l~~a~~~~rlyG~a~i~i~v~~~~~~~~~ 172 (532) T protein:vir:94 98 RTMHETPADECVRAWGKITCSSKDELAAD-KATRITQKLEQY----NVRTLVRTVVIHDQAYGGAHVFPHLKMDGDSVPA 172 (532) T ss_pred hhhhccchHHHhhCCceEeeCCccccchH-HHHHHHHHHHhh----hHHHHHHHHHHhhhcccceEEEEEeccCCccccc Confidence 99999999999999999864333222111 111122222221 223344445555678999988874332 Q ss_pred ------------CCceeEEEEecCcceEEEECCC--------CceeeEEeccccccccceeEEehhheEEeecCC----- Q lcl|Aclame:pro 129 ------------RGQIKELRILDWNRVEPLVADD--------GEVFYRITPDRNCGITEAVTVPAREVIHDRFNC----- 183 (454) Q Consensus 129 ------------~G~~~~l~~l~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~----- 183 (454) .|.+.++.+++|..+++..... |...++... ....++++.||||.... T Consensus 173 ~~p~~l~~~~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp~fg~P~~y~v~-------~g~~iH~SRli~f~g~~~p~~~ 245 (532) T protein:vir:94 173 DAPLLLSPSFVQRGCLIGFATIEPMWLSPNAYNATDPTLPSFYKPDSWIAT-------SGKKIHSSRIHTVVGRPVGDML 245 (532) T ss_pred cccccccccccccceeeEEEeechheecccccccccccccccCCceeEEEc-------cCeeeccceEEEecCCCchhhh Confidence 2345678889998888653221 111121110 12368899999986432 Q ss_pred -CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCC-C Q lcl|Aclame:pro 184 -FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSN-G 261 (454) Q Consensus 184 -~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~-g 261 (454) +...++|.|.++.+...|.....+.................+.....++.+..+.+.+++.....+.+..++++++. + T Consensus 246 ~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~v~k~~~a~~ls~~~~~~~~~r~~~~~~~~~n~g~~~id~~~ 325 (532) T protein:vir:94 246 KAAYSFRGVSISQLAMPYVDNWLRTRQSVSDTVKQFSMTNLATDMAQLLAPGGAQSLDARLQLFNLYRDNRNIGALDKGT 325 (532) T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeechHHhhcchhHHHHHHHHHHHHhhcCCccceEEcCCC Confidence 33455899999999999999999998888877775544433333233455666777777765544433445777764 5 Q ss_pred ceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccc-cCHHHHHHHHHH-------HHHHHHHHHHHHHHH Q lcl|Aclame:pro 262 AKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS-DNVEALEQQYYS-------QCLQTLIESIELLLD 333 (454) Q Consensus 262 ~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~-~n~e~~~~~~~~-------~~i~P~~~~ie~~l~ 333 (454) .+|++++.+..+ +.+......++||.+.|||...|-+...+.. ++.+....+|+. .-+.|.++.+-..|. T Consensus 326 e~~e~~~~~lsg--l~~~l~~~~~~iAaa~~IP~t~LfG~sp~GlnstGe~D~~~yyd~I~s~Qe~~l~p~le~l~~~l~ 403 (532) T protein:vir:94 326 EEIQQTNTPLSG--LDSLQAQSQEQMAAVSHIPLVKLLGITPNGLNASSDGEIRVWYDFIAGYQATNLTPLMEWIIDLIQ 403 (532) T ss_pred ceeEEEecccCC--HHHHHHHHHHHHHhHhCCCeeeeecCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 788888776665 4566788899999999999996533333333 455666666665 446788888887776 Q ss_pred HhhcCcccceeeecchhhhhcCHHHHH-------HHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccc-cccccc Q lcl|Aclame:pro 334 EALETGENESTEFDVTTLLRMDSERRM-------KTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNY-SLEALS 405 (454) Q Consensus 334 ~~l~~~~~~~~~f~~~~l~~~d~~~~~-------~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~-~~~~~~ 405 (454) +..+......+.|.|..|...+.++++ +++.+++++|++++||+|++++..|..+.+......... ..+... T Consensus 404 ~s~~g~~~~d~~~~f~pL~~~s~kEkAei~~~~a~a~~~~~~~Gvi~~~Evr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (532) T protein:vir:94 404 LSEYGQIDPGLAWEWSPLMELDDKELAEVRQLNASTDSTLMELGVIDAKMVQQRLAADPTSGYAGALGERDELDDVEEIA 483 (532) T ss_pred HHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCccccccccccccccccccchh Confidence 655543334577788888777777654 456789999999999999999998876654432221111 000000 Q ss_pred cccccccCCCccCcccCCCCCCcccCcccccccccccHHHHH-HHHHhcC Q lcl|Aclame:pro 406 RRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDAVKAM-FRGILKK 454 (454) Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a~-~~~~~~~ 454 (454) .........++ ........++.....++.......++.-++ .+=.=.| T Consensus 484 ~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 532 (532) T protein:vir:94 484 KQLMAAALNPP-ATAPQTPNPQPDSEDDQTDNQPDAQADPAQNDQPVGNR 532 (532) T ss_pred hhhcccccCCC-CCCCCCCCCCCCCCCCCCCCccCCCccccccCCCcCCC Confidence 00000000000 000000000000001111110000000000 0000000 No 109 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=99.91 E-value=2.1e-23 Score=144.87 Aligned_cols=422 Identities=13% Similarity=0.046 Sum_probs=247.2 Q ss_pred Ccchhhhhccccc--ccccc-Cccc-chhhhhhhhhhccccccCCccccHHHHH-hhHHHHHHHHHHHHhhcccceEEEe Q lcl|Aclame:pro 1 MWNLLRRTRKNQK--SGRDV-REAG-WTSLFQAVAEPFAGAWQQGVKADPEAVL-SFHAVFACISLISQDIAKMRLRLMQ 75 (454) Q Consensus 1 m~n~f~r~~~~~~--~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~i~~ia~~va~~~~~~~~ 75 (454) |-.--.- ..++ .+... +... ...++......--..+..+..+. +..+ +.+.|.+|++.+...|.+++|+|.. T Consensus 1 ~~~~~~~--~~p~~~~g~~~~~~~~~~~~~~~~~e~~~~lr~~~~~~ly-~~m~e~D~~i~s~l~~rk~av~~~~w~v~p 77 (469) T protein:vir:10 1 MTERVKT--AAPVSEAGYVFGSGVVDGWTVWDPFEQTPELQWPQSVAVY-SRMDNEDSRVTSLLEAISLPIRSTPWRIRA 77 (469) T ss_pred CCCcccC--CCCccchhhhhhcccccchhhccccccccccccccchHHH-HHHHhhChHHHHHHHHHHHHHhcCCceEec Confidence 3331110 1111 00000 0000 01111110000000111222232 3343 5899999999999999999999976 Q ss_pred ccccccceehhhhHHHHhhhhc-------------cccCCHHHHHHHHHHHHHHhCCeEEEEeeCC-----CC--ceeEE Q lcl|Aclame:pro 76 TDAQGIRRETRRGDIARLCRRP-------------NAQQNRIQFFELWLNAKLRHGNTVVLKIRNA-----RG--QIKEL 135 (454) Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~p-------------n~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~-----~G--~~~~l 135 (454) ..++.... ... ...+..+ +...+|.+++..++.+.+.+|.++.++++.. +| .+..| T Consensus 78 ~~~~~e~~---~~~-~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~~~~~dG~~~~~~l 153 (469) T protein:vir:10 78 NGASDEVT---EFV-SRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPRNQSPDGRFWLRKL 153 (469) T ss_pred CCCCHHHH---HHH-HHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeecccccCCCceeeeee Confidence 44432211 111 1112221 1234788888888888888999999998753 24 26677 Q ss_pred EEecCcceE-EEECCCCcee-eEEeccc-------cccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHH Q lcl|Aclame:pro 136 RILDWNRVE-PLVADDGEVF-YRITPDR-------NCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHH 206 (454) Q Consensus 136 ~~l~~~~~~-~~~~~~g~~~-~~~~~~~-------~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~ 206 (454) .+.|+.++. ...+.++... ++..... .........+++...|++++....+.++|.|.+..++-..-.... T Consensus 154 ~~rp~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~k~i~~~~~~~~g~p~g~gLlr~~~~~~~fK~~ 233 (469) T protein:vir:10 154 APRPQWTISKFNVAPDGGLESIEQIAPPARTRGSLYVANIAPPEIPVNRLVVYTRNKRPGQWQGKSILRSAYKHWLLKDK 233 (469) T ss_pred eecCcccceeeeeccCCceeeeeecCcccccccccccCCCCccccccCcEEEEEecCCCCCcccchhHHHHHHHHHHHHH Confidence 777877663 2333333322 2221110 011123456888888988888888889999999999999999999 Q ss_pred HHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHH Q lcl|Aclame:pro 207 IQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEI 286 (454) Q Consensus 207 ~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~ 286 (454) ..++...|...-+.|--+.+.+...++++.+.+.+.+.+...|.++ .++++.|++++-++.+.....|.+..++..++ T Consensus 234 ~~~~w~~f~EryG~P~~vgky~~~a~~~ek~~l~~a~~~~~~g~~a--~~iip~~~~ie~~ea~g~~~~~~~li~~~d~~ 311 (469) T protein:vir:10 234 LLRIEAATAERNGMGIPVGTASSATDEDEVRKMAALARSVRGGINA--GVGLAQGQILELLGVSGNLPDIRRAIEGHDRS 311 (469) T ss_pred HHHHHHHHHHHcCCcceEEecCCCCCHHHHHHHHHHHHHHhcCCce--EEEccCCceEEEeecCCCchHHHHHHHHHHHH Confidence 9999999999999999999998888898888888888888766555 36678888877776665666788899999999 Q ss_pred HHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--------ccceeeecchhhhhcCHHH Q lcl|Aclame:pro 287 VCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETG--------ENESTEFDVTTLLRMDSER 358 (454) Q Consensus 287 Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~--------~~~~~~f~~~~l~~~d~~~ 358 (454) |+.+. +-..+......++++-.+. ........+.-.++.|+..||+.|+++ ...+.+|.++... .+.+. T Consensus 312 Isk~i-LG~tlTs~~~gGS~a~~~v-h~ev~~d~~~sDa~~i~~tln~~li~~l~~lN~g~~~~~P~~~~~~~e-~~~~~ 388 (469) T protein:vir:10 312 IALSG-LAHFLNLDGKGGSYALASV-LEDPFTQAVHAYATSICRIANQHIIEDLVDINFGVDTPAPVLTFDPIG-SRQDL 388 (469) T ss_pred HHHHH-hcccccccCccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEecCCC-CcHHH Confidence 98877 2223332223344444333 344556678888999999999877643 2223455555543 56677 Q ss_pred HHHHHHHHHhCCCc-----CHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 359 RMKTLGDAVKNTLL-----TPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 359 ~~~~~~~~~~~g~~-----T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) .++.++++++.|++ +.+.+|+.+|+|+..+++....+.. .........+.... ......+... T Consensus 389 ~a~~i~~l~~~G~~~~~~~~~~~~~e~~gip~~~~~~~~~~~~~---------~~~~~~~~~~~~~~---~~~~~~~~~~ 456 (469) T protein:vir:10 389 TAAAVKLLYDAGVFDDDPAVKRAIRQRFNLPSELNDTPSAEPEE---------PAAVPNQSAAPART---RSSGNADARA 456 (469) T ss_pred HHHHHHHHHhcCCccCccccHHHHHHHhCCCCCCCCcccccchh---------cccCCCCCcccccc---CCCCCccccc Confidence 89999999999984 4577999999997666544322110 00000000000000 0000000010 Q ss_pred cccccccccHHHH Q lcl|Aclame:pro 434 KAITETEHDAVKA 446 (454) Q Consensus 434 ~~~~~~~~~~~~a 446 (454) .+.........+| T Consensus 457 ~~~~~~~~~l~da 469 (469) T protein:vir:10 457 RAPKADQGVLFDA 469 (469) T ss_pred ccCCChHHhhccC Confidence 1111000000011 No 110 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=99.89 E-value=2.7e-23 Score=144.35 Aligned_cols=437 Identities=14% Similarity=0.056 Sum_probs=228.4 Q ss_pred Ccchhhhhcccccc----ccccCcc--cchhh-----hhhhhhhcccc----------------ccCCccccHHHHHhhH Q lcl|Aclame:pro 1 MWNLLRRTRKNQKS----GRDVREA--GWTSL-----FQAVAEPFAGA----------------WQQGVKADPEAVLSFH 53 (454) Q Consensus 1 m~n~f~r~~~~~~~----~~~~~~~--~~~~~-----~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 53 (454) |++|+....+.+.. ....+.. ...+. .+++....++. ...+.. ....|.+++ T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gyq-l~alY~~~~ 121 (765) T protein:vir:96 43 IRGWNVEPEKAPVIRSVKDFLEPGLSVAMDSAYGDGPTPAAKAAAGGQNPYVVPTMLQDWYNSQGFIGYQ-ACAIISQHW 121 (765) T ss_pred HhhcccccccCCCCCCCCcccCcccceeccccccccccchHHHhhhccCccchhhHHHhhhcccCCccHH-HHHHHHhCc Confidence 77877554443211 1110110 00000 01111111000 011111 234577899 Q ss_pred HHHHHHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeC-CC--- Q lcl|Aclame:pro 54 AVFACISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRN-AR--- 129 (454) Q Consensus 54 ~v~~~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~-~~--- 129 (454) .++++|+.+++++-+-.|.|.....+.. ......+...+++= ...+-+..++.+..++|.+|+++.-. .+ T Consensus 122 l~rkiVd~pAeDa~R~g~~I~~~~~e~~--~~~~~~l~~~~~rl----~v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~ 195 (765) T protein:vir:96 122 LVDKACSMSGEDAARNGWELKSDGRKLS--DEQSALIARRDMEF----RVKDNLVELNRFKNVFGVRIALFVVESDDPDY 195 (765) T ss_pred hhhhhhhcchHHhhcCCceeecCccccC--HHHHHHHHHHHHHh----hHHHHHHHHHHHhhhceeeEEEEEecccCcch Confidence 9999999999999999988853221111 11111122222222 23444555566677899888776432 11 Q ss_pred ------------CceeEEEEecCcceEEEEC----CC--CceeeEEeccccccccceeEEehhheEEeecCC------Cc Q lcl|Aclame:pro 130 ------------GQIKELRILDWNRVEPLVA----DD--GEVFYRITPDRNCGITEAVTVPAREVIHDRFNC------FF 185 (454) Q Consensus 130 ------------G~~~~l~~l~~~~~~~~~~----~~--g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~------~~ 185 (454) |....|..++|..+.+... .+ ...++....+.. ....+.++.||||.-.. +. T Consensus 196 l~~PL~~~~I~kg~~kgl~vldp~~~~~~~v~e~~~Dp~sp~fg~P~~y~i----~g~~IH~SRli~~~g~~lpd~lk~~ 271 (765) T protein:vir:96 196 YEKPFNPDGIAPGSYKGISQIDPYWAMPQLTAESTADPSAEHFYEPDFWII----SGKKYHRSHLVVVRGPQPPDILKPT 271 (765) T ss_pred hhccccccccccceeeEEEEechhhcccccchhccccccccccCcceeeee----cCceeccceEEEecCCCchhhhccc Confidence 3445677777766665321 11 111221111111 12357788899885433 44 Q ss_pred CcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceee Q lcl|Aclame:pro 186 HPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYN 265 (454) Q Consensus 186 ~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~ 265 (454) ...+|.|.++.+...|.....+......++.......+.+.....+.. .+.+.++++......+..++++++.+.+|. T Consensus 272 ~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~~v~k~~~~~~l~~--~~~l~~r~~~~~~~r~n~g~~~id~ee~~e 349 (765) T protein:vir:96 272 YIFGGIPLTQRIYERVYAAERTANEAPLLAMSKRTSTIHVDVEKAIAN--EDAFNARLAFWIANRDNHGVKVIGIDETME 349 (765) T ss_pred cCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccceeeechHhhhcc--HHHHHHHHHHHHHhcCCceeEEecCCccee Confidence 556899999999999999999999999988887655443333222222 234455555444443344688898888999 Q ss_pred eccccchhhHHHHHHHHHHHHHHHHhccchhhhcccc-cccccCHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 266 PTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQ-PPSSDNVEALEQQYYS-------QCLQTLIESIELLLDEALE 337 (454) Q Consensus 266 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~-~~~~~n~e~~~~~~~~-------~~i~P~~~~ie~~l~~~l~ 337 (454) .++.+..+ +.+.+....++||.+.+||...|-+.. .+-.++.+....+|+. .-+.|.++.+-..|-+.- T Consensus 350 ~~s~~lsg--l~d~l~~~~~~iAaas~IP~t~LfGqsp~GlnATGe~D~~nYyD~I~s~Qe~~l~p~le~L~~li~~s~- 426 (765) T protein:vir:96 350 QFDTNLSD--FDSVIMNQYQLVAAIAKTPATKLLGTSPKGFNATGEHETISYHEELESIQEHIFDPLLERHYLLLAKSE- 426 (765) T ss_pred EEecccCC--HHHHHHHHHHHHHhhhCCCeeeeccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc- Confidence 88887775 466788889999999999997654433 4444666777777776 345555555555443321 Q ss_pred CcccceeeecchhhhhcCHHHHHH-------HHHHHHhCCCcCHHHHHHHhcCCCC------CCccc----ccccccccc Q lcl|Aclame:pro 338 TGENESTEFDVTTLLRMDSERRMK-------TLGDAVKNTLLTPNEARKRENLPPL------AGGDA----LYLQQQNYS 400 (454) Q Consensus 338 ~~~~~~~~f~~~~l~~~d~~~~~~-------~~~~~~~~g~~T~NE~R~~~g~~p~------~~~d~----~~~~~~~~~ 400 (454) .....+.|.|..|...+.+++++ ++.+++++|++++||+|+++..++. ++.+. ..-+.+... T Consensus 427 -~i~~d~~i~FnpL~~~sekEkAei~~k~Aea~~~~~~~Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~~~~~pe~~~~ 505 (765) T protein:vir:96 427 -SIDVQLEIVWNPVDSTTSQQQAELNNKKAATDEIYINSGVVSPDEVRERLRDDPRSGYNRLTDDQAETEPGMSPENLAE 505 (765) T ss_pred -CCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccccCCCCCCCccccccccCCCcccccc Confidence 12235778888888888777654 5788999999999999999865442 22111 111111111 Q ss_pred ccccccccc--------cccCCCccCcc-cCC---C--CCCcccCcccccc----cccccHHHHHHHHHhcC Q lcl|Aclame:pro 401 LEALSRRDA--------REDPFASSGKT-ASV---P--QAVAASDGNKAIT----ETEHDAVKAMFRGILKK 454 (454) Q Consensus 401 ~~~~~~~~~--------~~~~~~~~~~~-~~~---~--~~~~~~d~~~~~~----~~~~~~~~a~~~~~~~~ 454 (454) .+.....+. ...+.+..... ... + ..+...++..... +...+...+.+++.... T Consensus 506 ~~~~~~~~~~~~~e~~~~~a~p~~~eg~~~~~~~~p~~~~p~~~~~~~~~g~~~~~p~~~~p~~~~~~~~~~ 577 (765) T protein:vir:96 506 LEKAGAQSAKAKGEAERAEAQAGAVEGAGDPVPAAPRGTKPLAKAAEEGAGEAATPPSRPNPRAELRNLLSD 577 (765) T ss_pred ccCCCcccccccCccccccCCCCccCCCCcccccCCcccCCccccccccCccccCccccccccccchhcccc Confidence 111110000 00000000000 000 0 0000111111111 11122233444544443 No 111 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=99.88 E-value=4.6e-22 Score=137.54 Aligned_cols=431 Identities=9% Similarity=0.012 Sum_probs=244.1 Q ss_pred CcchhhhhccccccccccC--cccchhhhhhhhhhcccc--------ccCCcccc--HH---HHH-hhHHHHHHHHHHHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVR--EAGWTSLFQAVAEPFAGA--------WQQGVKAD--PE---AVL-SFHAVFACISLISQ 64 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~~--~~---~~~-~~~~v~~~i~~ia~ 64 (454) +.++++|..+.+....... ..+....+.........+ ...+..+. .+ .+. +.+.|.+|++.+.. T Consensus 4 ~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~~~m~e~D~~i~s~l~~Rk~ 83 (528) T protein:vir:10 4 IVDIYGNPLRTQQLRKQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQGHLQAQAELFMDMEERDAHLFAEMSKRKR 83 (528) T ss_pred eECCCCCccccccccchhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHHHHHH Confidence 5555555544322111110 000011111000000000 00011111 11 122 58899999999999 Q ss_pred hhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC-C--ceeEEEEecCc Q lcl|Aclame:pro 65 DIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR-G--QIKELRILDWN 141 (454) Q Consensus 65 ~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~-G--~~~~l~~l~~~ 141 (454) .|.+++|.|....++..........+..++.+ ...+.+++..++. .+++|.+++++++..+ | .+..+.++++. T Consensus 84 av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~---~~~f~~~i~~~ld-a~~~G~s~~Ei~w~~~~g~~~~~~~~~r~~~ 159 (528) T protein:vir:10 84 AVLGLDWTIEPPRNASAAEKADAEYLHELLLD---LEGIEDLMLDCMD-GVGHGYSAIELDWSLQGREWLPQAFDHRPQS 159 (528) T ss_pred HHhcCCceEecCCCCCHHHHHHHHHHHHHHhC---CccHHHHHHHHHh-hhhhcceeEEEEEeecCCceeEEEeeeeccc Confidence 99999999986544332211111122223322 1135556655443 5779999999986543 3 46788999998 Q ss_pred ceEEEECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCc Q lcl|Aclame:pro 142 RVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRP 221 (454) Q Consensus 142 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p 221 (454) ++.+..+.. ..+.... +. .....+++...+++++....+.++|.|.+..+.-..-......++...|...-|+| T Consensus 160 ~f~~~~~~~--~~l~~~~--~~--~~g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P 233 (528) T protein:vir:10 160 WFQLNPDDQ--DELRLRD--NS--IAGEVLQPFGWIMHKPRSRSGYVARSGLFRVLAWPYLFKHYSTADLAEMLEIYGLP 233 (528) T ss_pred ceeeccCCC--cEEeccC--CC--CCceeecCCCeEEEeecCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCC Confidence 877655432 2333221 11 23456777777777877788888999999999999999999999999999999999 Q ss_pred ceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeecccc-chhhHHHHHHHHHHHHHHHHhccchhhhcc Q lcl|Aclame:pro 222 SGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFS-PVDSQTVEQLKMTAEIVCSVFRVPAYKIGV 300 (454) Q Consensus 222 ~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~ 300 (454) -.+.+.+...++++.+++.+.+.++.+ ++ .++++.|++++-++.+ ..-..|.+..++..++|+.+. +-..+... T Consensus 234 ~~igky~~~a~~~ek~~L~~al~~i~~--~~--~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i-LGqtlTs~ 308 (528) T protein:vir:10 234 IRLGKYPPGTPDEEKVTLLRAVTGLGH--AA--AGIIPESMSIDFQEASKGSAEPFMAMMRWCDDSMSKAI-LGGTLTSQ 308 (528) T ss_pred eEEEecCCCCCHHHHHHHHHHHHHHhh--Cc--EEEecCCceeEEeecCCCChhHHHHHHHHHHHHHHHHH-hhhhhhcc Confidence 999999988899988888888877743 23 4667766655544422 222347888899999988876 33333222 Q ss_pred cc---cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-----------cceeeecchhhhhcCHHHHHHHHHHH Q lcl|Aclame:pro 301 GQ---PPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGE-----------NESTEFDVTTLLRMDSERRMKTLGDA 366 (454) Q Consensus 301 ~~---~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~-----------~~~~~f~~~~l~~~d~~~~~~~~~~~ 366 (454) .. .++++-.+ .........+.-.++.|+..||+.|+.+. ..+.+|.++.....|.+.+++.+.++ T Consensus 309 ~~~g~~gS~Alg~-vh~~v~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L 387 (528) T protein:vir:10 309 TSESGGGAYALGQ-VHNEVRHDLLAADARQLAATLSRDLLWPLLVLNRSGNLDARRAPRLVFDLKDRADLAAMATSLPPL 387 (528) T ss_pred ccccccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCCcccHHHHHHHHHHH Confidence 11 12232222 23344566777788999999998775421 12235555555678889999999999 Q ss_pred HhCCC-cCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccccccc------- Q lcl|Aclame:pro 367 VKNTL-LTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITE------- 438 (454) Q Consensus 367 ~~~g~-~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------- 438 (454) +..|+ ++..++|+.+|+|.-.+++.+..+....+.. +...........................+ T Consensus 388 ~~~G~~i~~~~i~e~~gip~p~~~e~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 460 (528) T protein:vir:10 388 VKLGVQVPVNWVQEQLGIPLPANGEAVLGDQAGAGIA-------QLSRRPGPRIAALAQVIGPRYRDQEALDQVLASLPA 460 (528) T ss_pred HhCCCCCCHHHHHHHhCCCCCCCCcccccCCCccccc-------ccCcccccccccccccccccccccchHHHHHHHHHH Confidence 99998 8999999999998765555554322111110 00000000000000000000001000100 Q ss_pred -ccccHHHH---HHHHHhcC Q lcl|Aclame:pro 439 -TEHDAVKA---MFRGILKK 454 (454) Q Consensus 439 -~~~~~~~a---~~~~~~~~ 454 (454) .-+...++ .+++++++ T Consensus 461 ~~~~~~~~~~l~~i~~~l~~ 480 (528) T protein:vir:10 461 QDMQNQADSLVAPLLDVISR 480 (528) T ss_pred HHHHHHHHHHHHHHHHHHHh Confidence 00011111 22233333 No 112 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=99.88 E-value=8.7e-22 Score=136.03 Aligned_cols=433 Identities=10% Similarity=0.032 Sum_probs=244.3 Q ss_pred Ccchh---hhhccccccccc--cCcccchhhhhhh-hhhc--------cccccCC-ccccHHH---HH-hhHHHHHHHHH Q lcl|Aclame:pro 1 MWNLL---RRTRKNQKSGRD--VREAGWTSLFQAV-AEPF--------AGAWQQG-VKADPEA---VL-SFHAVFACISL 61 (454) Q Consensus 1 m~n~f---~r~~~~~~~~~~--~~~~~~~~~~~~~-~~~~--------~~~~~~~-~~~~~~~---~~-~~~~v~~~i~~ 61 (454) |--++ .|-...+..... ..-.+....+... ...+ ......| .....+. +. +.+.|.+|++. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iLr~a~~gd~~~~~~L~e~m~e~D~~i~s~l~~ 80 (526) T protein:vir:99 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCcCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 44443 332221111000 0000001111100 0000 0000011 1111112 22 58999999999 Q ss_pred HHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC-C--ceeEEEEe Q lcl|Aclame:pro 62 ISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR-G--QIKELRIL 138 (454) Q Consensus 62 ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~-G--~~~~l~~l 138 (454) +...|.+++|.|....+++.........+..++.+ ..++.+++..++. .+.+|-+++++++..+ | .+..+.+. T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~---~~~~~~~i~~~ld-a~~~G~s~~Eivw~~~~g~~~~~~l~~r 156 (526) T protein:vir:99 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLD---LEGLEDLLLDALD-GIGHGYSCIELEWALQGREWMPLAFHHR 156 (526) T ss_pred HHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhc---ccCHHHHHHHHHH-hhhhcceeEEEEEeecCCceeEEEeeee Confidence 99999999999986544433222111222223321 1246677777664 6789999999986554 3 47788999 Q ss_pred cCcceEEEECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 139 DWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNG 218 (454) Q Consensus 139 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng 218 (454) ++.++....+...... +... ......+++...|.+++....+.++|.|.+..+.-..-......++...|...- T Consensus 157 ~~~~f~~~~~~~~~l~--~~~~----~~~g~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~y 230 (526) T protein:vir:99 157 PQSWFQLNPEDQNELR--LRDN----SPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIY 230 (526) T ss_pred cccceeeccCCCcEEE--ecCC----CCCceeecCCCeEEEeecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHc Confidence 9988887655543322 2211 123456777777777777778889999999999999999999999999999999 Q ss_pred CCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeecccc-chhhHHHHHHHHHHHHHHHHhccchhh Q lcl|Aclame:pro 219 GRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFS-PVDSQTVEQLKMTAEIVCSVFRVPAYK 297 (454) Q Consensus 219 ~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~~fgvp~~~ 297 (454) |+|-.+.+.+...++++.+++.+.+.+..+ ++ .++++.|++++-+..+ .....|.+..++..++|+.++ +-..+ T Consensus 231 G~P~~igky~~~a~~~ek~~L~~av~~i~~--d~--~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i-LGqtl 305 (526) T protein:vir:99 231 GLPIRLGKYPPGTADEEKATLLRAVTGLGH--AA--AGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV-LGGTL 305 (526) T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHHHhh--Cc--EEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHH-hhhhh Confidence 999999999888899988888888877743 23 5677777665544432 222347888899999998876 33332 Q ss_pred hccc---ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-----------ccceeeecchhhhhcCHHHHHHHH Q lcl|Aclame:pro 298 IGVG---QPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETG-----------ENESTEFDVTTLLRMDSERRMKTL 363 (454) Q Consensus 298 lg~~---~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~-----------~~~~~~f~~~~l~~~d~~~~~~~~ 363 (454) .... ..++++..+. ........+.-.++.|+..||+.|+.+ .....+|.++.....|.+.+++.+ T Consensus 306 Ts~~~~g~~gS~a~g~v-h~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~ 384 (526) T protein:vir:99 306 TSTTSQSGGGAFALGQV-HNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSI 384 (526) T ss_pred ccccccCcchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCCcccHHHHHHHH Confidence 2211 1223333322 233455667778899999999877542 112335556656678899999999 Q ss_pred HHHHhCCC-cCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccccccccccc Q lcl|Aclame:pro 364 GDAVKNTL-LTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHD 442 (454) Q Consensus 364 ~~~~~~g~-~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 442 (454) .+++..|+ ++..++|+.+|+|.-.+++.++.+..-.... . ...............+..++.+.-+....+.... T Consensus 385 ~~L~~~G~~i~~~~i~e~~Gip~~~~~e~~l~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~ 459 (526) T protein:vir:99 385 PALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAIL---S--RQHGQRVAALATIVGPRYGDQQALDKALADLPAK 459 (526) T ss_pred HHHHhCCCccCHHHHHHHhCCCCCCCcccccCCCCCCccc---c--cccccccccccccccccCcchhhHHHHHHHHHHH Confidence 99999997 8999999999998655555444321110000 0 0000000000000000111100000000000001 Q ss_pred HHH-------HHHHHHhcC Q lcl|Aclame:pro 443 AVK-------AMFRGILKK 454 (454) Q Consensus 443 ~~~-------a~~~~~~~~ 454 (454) ... +.++.++++ T Consensus 460 ~~~~~~~~~l~~i~~~l~~ 478 (526) T protein:vir:99 460 DMQNQANDLLAPLLEAVNR 478 (526) T ss_pred HHHHHHHHHHHHHHHHHHh Confidence 111 123333333 No 113 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=99.87 E-value=2.4e-21 Score=133.60 Aligned_cols=430 Identities=10% Similarity=0.024 Sum_probs=243.9 Q ss_pred Ccchh---hhhcccccccc-cc-Ccccchhhhhh-hhhhc--------cccccCC-ccccHHH---HH-hhHHHHHHHHH Q lcl|Aclame:pro 1 MWNLL---RRTRKNQKSGR-DV-REAGWTSLFQA-VAEPF--------AGAWQQG-VKADPEA---VL-SFHAVFACISL 61 (454) Q Consensus 1 m~n~f---~r~~~~~~~~~-~~-~~~~~~~~~~~-~~~~~--------~~~~~~~-~~~~~~~---~~-~~~~v~~~i~~ 61 (454) |--++ .|-.+...... .. .-.+....+.. ....+ +.....| .....+. .. +.+.|.+|++. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~edm~e~D~~i~s~l~~ 80 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) T ss_pred CCeeeCCCCCccCccccchhhhhhhhhhhhhcccCCCCCcCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 44443 33222111000 00 00000011110 00000 0000011 1111122 22 58999999999 Q ss_pred HHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC-C--ceeEEEEe Q lcl|Aclame:pro 62 ISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR-G--QIKELRIL 138 (454) Q Consensus 62 ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~-G--~~~~l~~l 138 (454) +...|.+++|.|....+++......-..+..++.+ ..++.+++..++. .+.+|-+++++++..+ | .+..+.+. T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~---~~~~~~~i~~~ld-A~~~G~s~~Ei~w~~~~g~~~~~~l~~r 156 (526) T protein:vir:79 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLD---LEGLEDLLLDALD-GIGHGYSCIELEWALQGREWMPLAFHHR 156 (526) T ss_pred HHHHHhCCCceEecCCCCChHHHHHHHHHHHHHhc---ccCHHHHHHHHHh-hhhhcceeEEEEEeecCCceeEEEeeee Confidence 99999999999986544433222111222233321 1236667777655 5779999999987654 3 47788999 Q ss_pred cCcceEEEECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 139 DWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNG 218 (454) Q Consensus 139 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng 218 (454) ++.++....+...... +.. .......+++...|++++....+.++|.|.+..+.-..-......++...|...- T Consensus 157 ~~~~F~~~~~~~~~l~--~~~----~~~~g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~y 230 (526) T protein:vir:79 157 PQSWFQLNPEDQNELR--LRD----NSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIY 230 (526) T ss_pred cccceEeccCCCcEEE--ecC----CCCCceeecCCceEEEeecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHc Confidence 9988886655443322 221 1123456777777777878788889999999999999999999999999999999 Q ss_pred CCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeecccc-chhhHHHHHHHHHHHHHHHHhccchhh Q lcl|Aclame:pro 219 GRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFS-PVDSQTVEQLKMTAEIVCSVFRVPAYK 297 (454) Q Consensus 219 ~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~~fgvp~~~ 297 (454) |+|-.+.+.+...++++.+++.+.+.++-+ + ..++++.|++++-++.+ .....|.+..++..++|+.+. +-..+ T Consensus 231 G~P~~igky~~~a~~~ek~~L~~av~~i~~--d--a~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i-LGqtl 305 (526) T protein:vir:79 231 GLPIRLGKYPPGTADEEKATLLRAVTGLGH--A--AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV-LGGTL 305 (526) T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHHHhc--C--cEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHH-hhhhh Confidence 999999999888888888888888887743 2 35677777666554432 222357888899999998876 33333 Q ss_pred hccc---ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-----------cceeeecchhhhhcCHHHHHHHH Q lcl|Aclame:pro 298 IGVG---QPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGE-----------NESTEFDVTTLLRMDSERRMKTL 363 (454) Q Consensus 298 lg~~---~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~-----------~~~~~f~~~~l~~~d~~~~~~~~ 363 (454) .... ..++++..+. ........+.-.++.|+..||+.|+.+. ....+|.++.....|.+.+++.+ T Consensus 306 Ts~~~~g~~gS~a~g~v-h~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~ 384 (526) T protein:vir:79 306 TSTTSQSGGGAFALGQV-HNEVRHDILASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSI 384 (526) T ss_pred ccccccCcchhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCCcccHHHHHHHH Confidence 2211 1223333333 3344566777788999999998776431 12335555555678899999999 Q ss_pred HHHHhCCC-cCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCC---CCCcccCcccccccc Q lcl|Aclame:pro 364 GDAVKNTL-LTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVP---QAVAASDGNKAITET 439 (454) Q Consensus 364 ~~~~~~g~-~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~ 439 (454) .+++..|+ ++..++|+.+|+|...+++.+..+.. ................... ..++.+..+....+. T Consensus 385 ~~L~~~G~~i~~~~i~e~~gip~~~~~e~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 456 (526) T protein:vir:79 385 PALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRPAA--------QPAILSRQHGQRVAALATIVGPRYGDQQALDKALADL 456 (526) T ss_pred HHHHhCCCcCCHHHHHHHhCCCCCCCchhhccccC--------CccccccccccccccccccccccCchhhHHHHHHHHH Confidence 99999997 88899999999976555444432211 0000000000000000000 000000000000010 Q ss_pred cc----cHHH---HHHHHHhcC Q lcl|Aclame:pro 440 EH----DAVK---AMFRGILKK 454 (454) Q Consensus 440 ~~----~~~~---a~~~~~~~~ 454 (454) .. .+.+ +.++.++++ T Consensus 457 ~~~~~~~~~~~~~~~i~~~~~~ 478 (526) T protein:vir:79 457 PAKDMQNQANDLLAPLLDAVNR 478 (526) T ss_pred HHHHHHHHHHHHHHHHHHHHHh Confidence 00 0111 122222222 No 114 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=99.87 E-value=3.9e-22 Score=137.95 Aligned_cols=436 Identities=13% Similarity=0.055 Sum_probs=220.4 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhh---------------hccccccCCccccHHHHHhhHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAE---------------PFAGAWQQGVKADPEAVLSFHAVFACISLISQD 65 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ 65 (454) |=|-.+...+.. ......+.......++. .+......+.. ....|.+++.++++|+.++++ T Consensus 84 ~~~a~~~~~~~~---~~~~~Dgl~n~~~~lG~~~~~s~y~~~~~~~~~~~~~~f~gyq-l~alY~~~~larkiVd~pAeD 159 (862) T protein:vir:99 84 MDSAVRSAIKAI---TGFAMDDGGGAPVPIGAEGKQSSYAVPEALQDWYLSQGFIGHQ-ACALIAQHWLVDKACSLAGED 159 (862) T ss_pred chhhcchhhhhh---hhhhhhcchhhhhhccccccccccccchhccccccccCcccHH-HHHHHHhCchhhhhhhhhhHH Confidence 111110000000 00000000000000000 00000011111 134677899999999999999 Q ss_pred hcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEee-CCC--------------- Q lcl|Aclame:pro 66 IAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIR-NAR--------------- 129 (454) Q Consensus 66 va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r-~~~--------------- 129 (454) +.+-.+++....++..........+...+.+=+ ..+-+..++.+.-++|.+++++.. ..+ T Consensus 160 atR~g~~I~~~~d~~e~~~e~~~~ie~~~~rL~----v~~~l~eair~~RLyGga~ililv~~~D~~~LsqPLn~e~I~k 235 (862) T protein:vir:99 160 AIRNGWHLKSLGEGEEIDEESLEKFKAIDVEFK----VKENLIEFNRFKNVFGIRVAIFVVDSEDPDYYEKPFNPDGITP 235 (862) T ss_pred HhhCCceEeecCcccccCHHHHHHHHHHHHHhh----HHHHHHHHHHhcccccceEEEEEecCcCchhhhcCcCcccccc Confidence 999999997533322211111112222222222 222333444445668877766542 222 Q ss_pred CceeEEEEecCcceEEEE----CCC--CceeeEEeccccccccceeEEehhheEEeecCC------CcCcccccchhhhh Q lcl|Aclame:pro 130 GQIKELRILDWNRVEPLV----ADD--GEVFYRITPDRNCGITEAVTVPAREVIHDRFNC------FFHPLIGLPPVYAA 197 (454) Q Consensus 130 G~~~~l~~l~~~~~~~~~----~~~--g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~------~~~~~~G~s~l~~~ 197 (454) |.+..|.+++|.++.+.. ..+ ...++....+.. ....+.++.+|+|.-.. +...++|+|.++.+ T Consensus 236 G~lkgl~vlDp~w~~p~~v~~~~~Dp~sp~yGkP~~y~I----~g~~IH~SRliif~g~~vpd~lk~ay~f~G~SvLe~i 311 (862) T protein:vir:99 236 GSYRGISQIDPYWMMPMLTAESTADPSSQFFYEPEFWII----SGQKYHRSHLIIARGPQPADILKPTYIFGGIPLVQRI 311 (862) T ss_pred cceeEEEEechhhhcccccccccccccccccCCceeeee----cCeeeccceeEEecCCCchhhhhccCCccCccHHHHH Confidence 345678888887776532 111 111111111111 11357788888885433 34456799999999 Q ss_pred HhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHH Q lcl|Aclame:pro 198 GLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTV 277 (454) Q Consensus 198 ~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~ 277 (454) ...|.....+......++.+.....+-+..-..+..+ +.+.+++.....+.+..++++++.+.+++.++.+..++ - T Consensus 312 yd~L~~~d~t~~saa~Ll~ka~l~v~ktd~l~~l~~e--d~l~~r~~~~~~~rdN~Gi~liD~eEe~e~ls~slSGL--~ 387 (862) T protein:vir:99 312 YERVYAAERTANEAPLLAMNKRTTAIHTDTAKAIANE--DKFIQRLMFWVRYRDNHAVKVLGTDETMEQFDTSLADF--D 387 (862) T ss_pred HHHHHHHHHHHHHHHHHHHHhccceeechhHhhhccH--HHHHHHHHHHHhccCcceeEEecCCCceeEEecccCCh--H Confidence 9999999999999999988866444333222223322 33444444333333344588999888999888777654 5 Q ss_pred HHHHHHHHHHHHHhccchhh-hcccccccccCHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcCcccceeeecch Q lcl|Aclame:pro 278 EQLKMTAEIVCSVFRVPAYK-IGVGQPPSSDNVEALEQQYYS-------QCLQTLIESIELLLDEALETGENESTEFDVT 349 (454) Q Consensus 278 e~~~~~~~~Ia~~fgvp~~~-lg~~~~~~~~n~e~~~~~~~~-------~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~ 349 (454) +......++||.+.+||... +|..-.+..++.+....+|+. .-+.|+++.+...+...+-.+ ..+.|.|. T Consensus 388 dll~~~~q~IAaas~IP~tiLfGqspaGlnATGE~D~~nYyD~I~s~QE~~L~P~LerL~~li~~~lg~~--~d~~ieFn 465 (862) T protein:vir:99 388 AVIMGQYQLVASIAKTPATKLLGTAPKGFNSTGEFETISYHEELESIQEHVYMPFLQRHYLISRLSLGIQ--HEIDVVME 465 (862) T ss_pred HHHHHHHHHHHhhhCCCceeecccCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcceEEeC Confidence 56788888999999999985 554435555677777777766 457788888887776555322 34677778 Q ss_pred hhhhcCHHHHHH-------HHHHHHhCCCcCHHHHHHHh------cCCCCCCcccc----cccccccccccccccc--cc Q lcl|Aclame:pro 350 TLLRMDSERRMK-------TLGDAVKNTLLTPNEARKRE------NLPPLAGGDAL----YLQQQNYSLEALSRRD--AR 410 (454) Q Consensus 350 ~l~~~d~~~~~~-------~~~~~~~~g~~T~NE~R~~~------g~~p~~~~d~~----~~~~~~~~~~~~~~~~--~~ 410 (454) .|...+.+++++ ++..++++|+++++|+|+++ |++.+++.+.. ..+.+.......+... .+ T Consensus 466 pL~~~sekEkAEi~kk~Aea~~~lv~sGvispdEvR~~L~~~~~~g~~~l~ded~E~d~~~~~e~~~~~e~~g~a~~~ap 545 (862) T protein:vir:99 466 PVASMTAQQQADLNKTKAEGGKVLIDGGVISPDEERNRIRDDKRSGYNRLTKEDAEETPGASPENLAAYQKAGAAQETAS 545 (862) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcCCCCCCcccccccCCCCcccccccccCCccccccc Confidence 888888877664 46789999999999999976 44444332211 1111111111100000 00 Q ss_pred ccCCCcc-------CcccCCCCCCc--------ccCcccccc------cccccHHHHHHHH------------HhcC Q lcl|Aclame:pro 411 EDPFASS-------GKTASVPQAVA--------ASDGNKAIT------ETEHDAVKAMFRG------------ILKK 454 (454) Q Consensus 411 ~~~~~~~-------~~~~~~~~~~~--------~~d~~~~~~------~~~~~~~~a~~~~------------~~~~ 454 (454) .....+. +.....+..+. ..++..+.. .....+.-+.+++ ++.. T Consensus 546 ~de~~aga~~~~~e~d~~~~p~~~~~~~g~~~~~t~~~~a~~p~~~~~~~~~~~~~~e~~~~~~~~~~~v~~~~~~~ 622 (862) T protein:vir:99 546 AKETQAGAAVTTAEGDQPNVQMVPSMKPGQMVGPEVGITAPMPEDDAPVAGVVAKLAELQQAQMGAVTGVLARLVEQ 622 (862) T ss_pred ccccccccCCccccCCcccccccCCCCCCCccccccccccCCCccccccCcccccchhhhcCcchhhcchhhhhHHH Confidence 0000000 00000000000 000000000 0001111122222 1222 No 115 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.86 E-value=3e-22 Score=138.58 Aligned_cols=387 Identities=11% Similarity=0.045 Sum_probs=209.8 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhh----hccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAE----PFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTD 77 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~ 77 (454) +-+|-++.+.+.+.. .++...+.+... .+......+...-...|.+++.++++|+.+|+.+-+..|++.... T Consensus 1 ~~~~m~~~~~~~~~~----D~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Y~~~~l~~~~Vd~~aed~~r~g~~i~g~~ 76 (435) T protein:vir:79 1 MGVFMSDKVKAITKE----DGYNEIFGSKDGTFRPNAFYMQRAAFKALSQFYEEDGMARRIVDVIPEEMVTPGFKVDGVK 76 (435) T ss_pred CCcccccccccchhh----cchhhhhcccccccccCcccCCcCCHHHHHHHHhcCchhhhhhccchHHhhcCCceecCCC Confidence 555644333222211 122121211100 000111112222234567899999999999999999999874211 Q ss_pred ccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEee-CC---------CCceeEEEEecCcceEEEE Q lcl|Aclame:pro 78 AQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIR-NA---------RGQIKELRILDWNRVEPLV 147 (454) Q Consensus 78 ~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r-~~---------~G~~~~l~~l~~~~~~~~~ 147 (454) . . ..+...+.+= ...+-+..++.+..++|.++|++.. +. .|....+.++++..+++.. T Consensus 77 ~--~------~~~~~~~~~l----~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~~g~i~~i~v~d~~~i~~~~ 144 (435) T protein:vir:79 77 N--E------KSFKSRWDEL----RLNAKIIDALSWSRLFGGSAILAVVADNKMLKSPVKPGAQLEDIRVYDRYQITIHE 144 (435) T ss_pred h--H------HHHHHHHHHh----hHHHHHHHHHHhhhccccEEEEEEecCCCCcccccccCCceeeEEeechhhccchh Confidence 1 1 1111122221 2223455555666789998888763 22 3455688888888877543 Q ss_pred CC-------CCcee-eEEeccccccccceeEEehhheEEeec------CCCcCcccccchh-hhhHhHHHHHHHHHHHHH Q lcl|Aclame:pro 148 AD-------DGEVF-YRITPDRNCGITEAVTVPAREVIHDRF------NCFFHPLIGLPPV-YAAGLAATQGHHIQENST 212 (454) Q Consensus 148 ~~-------~g~~~-~~~~~~~~~~~~~~~~~~~~~vih~~~------~~~~~~~~G~s~l-~~~~~~i~~~~~~~~~~~ 212 (454) .. .|.+. |.+.. ........+.++.+|||.. ..+.+..+|.|++ +.+.+.|.....+..... T Consensus 145 ~~~dp~sp~fg~P~~y~v~~---~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~ 221 (435) T protein:vir:79 145 RETNARSVRYGEPKLYKISP---GGDIPEFFVHYSRICIIDGERVSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELAT 221 (435) T ss_pred hccCCcccccCcceEEEEec---CCCCCceEEcceeEEEecCCcchhhhccccCcccchHHHHHHHHHHHHHHHHHHHHH Confidence 22 12222 33321 1122356789999999852 3355677899998 688999999999999988 Q ss_pred HHHhccCCcceeEe-cCccC-CHHHHHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 213 SFFRNGGRPSGVIE-IPGSI-TEENAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCS 289 (454) Q Consensus 213 ~~~~ng~~p~~~l~-~~~~~-s~e~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~ 289 (454) ..+.........+. +.... +.......++++...... .+.+.+++..++.+++.++.+..+ +.+......++||. T Consensus 222 ~l~~~~~~~v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~i~~~~e~~e~~~~~lsg--l~~~~~~~~~~iaa 299 (435) T protein:vir:79 222 QLLRRKQQAVWKARDLALMCDDEEGRYAARLRLAQVDDESGVGKAIGIDATDEEYEVLNSDVSG--VPEFLQEKIDRIVA 299 (435) T ss_pred HHHHHhcCccccchhHHHhhcCccchHHHHHHHHHHHHhcCCCCceeEecCCcceEEEecccCC--HHHHHHHHHHHHHh Confidence 88766554433221 11111 222333444444433322 223445555566778888877665 46778899999999 Q ss_pred Hhccchhhhcccccccc-cCHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHH-- Q lcl|Aclame:pro 290 VFRVPAYKIGVGQPPSS-DNVEALEQQYYSQC-------LQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERR-- 359 (454) Q Consensus 290 ~fgvp~~~lg~~~~~~~-~n~e~~~~~~~~~~-------i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~-- 359 (454) +.+||...|.+...+.. ++.+....+|+..+ +.|.++.+-.. +... ..+.|.|+.|...|.+++ T Consensus 300 a~~IP~t~L~G~s~~glnstgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~l----i~~s--~d~~~~f~pL~~~sekEkAe 373 (435) T protein:vir:79 300 LTGIHEIIIKNKNTGGVSASQNTALETFYKLIDRKRVEDYKPILEFLLPF----MISE--TEWSIEFEPLSVPSDKDKAE 373 (435) T ss_pred hhCCCeeeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcC--CCCeEEeCCCCCCCHHHHHH Confidence 99999987654444433 55677777776643 33443333222 2222 356777888887777654 Q ss_pred -----HHHHHHHHhCCCcCHHHHHHHh-cCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 360 -----MKTLGDAVKNTLLTPNEARKRE-NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 360 -----~~~~~~~~~~g~~T~NE~R~~~-g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) ++++.+++++|+++++|+|+.+ ...+..+.. ......++.. +..+. .+..+..++ T Consensus 374 i~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~----~~~~~~~~~~------~d~~~---------~~~~e~g~~ 434 (435) T protein:vir:79 374 IMAKNVESVVKLKAEQAINLKETRDTLRSICPDLKIM----DNDNIELPEP------EDLDP---------EPGQEGGLN 434 (435) T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccccCCC----CcccccCCcc------ccCCC---------CCCCCCCCC Confidence 4567788999999999999877 322211100 0000001000 00000 000011111 Q ss_pred c Q lcl|Aclame:pro 434 K 434 (454) Q Consensus 434 ~ 434 (454) + T Consensus 435 ~ 435 (435) T protein:vir:79 435 K 435 (435) T ss_pred C Confidence 1 No 116 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.86 E-value=5.4e-22 Score=137.19 Aligned_cols=432 Identities=11% Similarity=0.002 Sum_probs=232.3 Q ss_pred cchhhhhccc-------c---ccc-c-ccCcccchhhhhhhhhhcccc------ccC-CccccHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 2 WNLLRRTRKN-------Q---KSG-R-DVREAGWTSLFQAVAEPFAGA------WQQ-GVKADPEAVLSFHAVFACISLI 62 (454) Q Consensus 2 ~n~f~r~~~~-------~---~~~-~-~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~v~~~i~~i 62 (454) +||+-|.... + .+. . ......-.....|... ..+. ... -..-+...+..+|.+..+|+.+ T Consensus 1 mn~~dr~i~~~sP~~~~~R~~ar~~~~~y~aa~~~r~~~~~~~-~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~ 79 (502) T protein:vir:79 1 MAILDDVIGVFSPGWKAARLRSRAVIQAYEAVKTTRTHKARRE-NRTADQLSQYGAVSLREQARYLDNNHDLVIGVFDKL 79 (502) T ss_pred CchHhhHHhhcChHHHHHHHhhHHHHhhccccCcccccCCCCC-CCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH Confidence 4444332111 0 000 0 0000000000011000 0000 000 0001123455689999999988 Q ss_pred HHhhccc-ceEEEe--ccccccce-eh---hhhHHHHhhhhcc--ccCCHHHHHHHHHHHHHHhCCeEEEEeeCC----- Q lcl|Aclame:pro 63 SQDIAKM-RLRLMQ--TDAQGIRR-ET---RRGDIARLCRRPN--AQQNRIQFFELWLNAKLRHGNTVVLKIRNA----- 128 (454) Q Consensus 63 a~~va~~-~~~~~~--~~~~~~~~-~~---~~~~~~~l~~~pn--~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~----- 128 (454) ...+-.. .+.+.. ...+.... +. -...+..|.+++. -.++++.+-..++..++..|++|+.+++.. T Consensus 80 ~~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~~~~ 159 (502) T protein:vir:79 80 EERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMVSGRINSLT 159 (502) T ss_pred HHhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEeecccCccC Confidence 7777654 343322 11221111 11 1122333333332 247899999999999999999999986543 Q ss_pred --CCceeEEEEecCcceE------------EEECCCCceeeEEecc---ccccccceeEEehhheEEeecCCCcCccccc Q lcl|Aclame:pro 129 --RGQIKELRILDWNRVE------------PLVADDGEVFYRITPD---RNCGITEAVTVPAREVIHDRFNCFFHPLIGL 191 (454) Q Consensus 129 --~G~~~~l~~l~~~~~~------------~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~ 191 (454) .+.+..|..|+|+.+. |..|..|....|+... ......+...+++++|||+......++..|+ T Consensus 160 ~g~~~~l~lq~iepd~l~~~~~~~~~i~~GVe~d~~Gr~~aY~i~~~hPgd~~~~~~~rvpA~~vlH~f~~~r~gQ~RGi 239 (502) T protein:vir:79 160 PSAGVHFWLEALEPDFIPMTSDESNRLNQGVFVDDWGRPEKYLVYKSRPVSGRQMETKEVDAERMLHLKFVRRLHQMRGT 239 (502) T ss_pred CCcccceEEEEecchhcCCCCCCCCeeEeeeEECCCCceEEEEEeecCCCCCcccceeEechhheEEeecccCCccccCC Confidence 2346789999998886 4455566555444332 2223345678999999999988888999999 Q ss_pred chhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCce-ecCCCceeeecccc Q lcl|Aclame:pro 192 PPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTA-ILSNGAKYNPTTFS 270 (454) Q Consensus 192 s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~-vl~~g~~~~~l~~~ 270 (454) |.+..+...+.......+......+-.+...++|+.+.+.+..... .-..-......-..|.++ .|..|.+++..+.+ T Consensus 240 s~lapvl~~l~~l~~~~dael~~a~i~A~~~~fi~~~~~~~~~~~~-~~~~~~~~~~~l~pG~i~~~L~pGe~i~~~~p~ 318 (502) T protein:vir:79 240 SLLSGVLIRLSALKEYEDSELTAARIAAALGMYIRKGDGQSYEPDG-NGSKENERELTIQPGIIYDDLKPGEEIGMVKSD 318 (502) T ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCccccccc-CCCCCccccccccCCccccccCCCceeeeeCCC Confidence 9999999999988888888888877788788888765432111000 000000000011235444 58899999888866 Q ss_pred chhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHH-----------HHHHHHH-HHHHHHHHhhcC Q lcl|Aclame:pro 271 PVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQ-----------CLQTLIE-SIELLLDEALET 338 (454) Q Consensus 271 ~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~-----------~i~P~~~-~ie~~l~~~l~~ 338 (454) .....|.+..+...+.||+++|||-+.|...-+.|||++.+....+.+. .++|+.. +++.++-.-.++ T Consensus 319 ~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~G~i~ 398 (502) T protein:vir:79 319 RPNPNLETFRNGQLRAVAAGSRLSFSSTARNYNGTYSAQRQELVESTDGYLILQDWFIGAVTRPMYRAWLKQAVASGVIR 398 (502) T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC Confidence 5566789999999999999999999876654456888876666555432 3333332 233333222221 Q ss_pred -cc----cc--eeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccc Q lcl|Aclame:pro 339 -GE----NE--STEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDARE 411 (454) Q Consensus 339 -~~----~~--~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~ 411 (454) +. .. .+.|-.-.....|+...+++...++.+|+.|.-++-...|.+|.+.-+.+---.....--++.....+. T Consensus 399 ~p~~~~~~~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~Gl~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~ 478 (502) T protein:vir:79 399 LPRDLDRSSLYTAVYSGPVMPWIDPVKEAEAWKIQIRGGAATESDWVRAGGRNPDDVKRRRKAEIDENRKLDLVFDTDPA 478 (502) T ss_pred CCCCCCchhhcceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCCCC Confidence 11 01 122222334557999999999999999999999988888998754322211000000000000000111 Q ss_pred cCCCccCcccCCCCCCcccCcccccccccc Q lcl|Aclame:pro 412 DPFASSGKTASVPQAVAASDGNKAITETEH 441 (454) Q Consensus 412 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 441 (454) ....+. ......+++..+++ +.++ T Consensus 479 ~~~~~~-~~~~~~~e~~~~~~-----~~e~ 502 (502) T protein:vir:79 479 SDKGGS-SAATKRQEPQHTDD-----QSEE 502 (502) T ss_pred CCCCCC-CCCCCCCCCCCCCC-----CCCC Confidence 000000 00000011111111 0111 No 117 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.86 E-value=9e-22 Score=135.98 Aligned_cols=396 Identities=14% Similarity=0.113 Sum_probs=217.2 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhcc------ccccC----CccccHHHHHhhHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFA------GAWQQ----GVKADPEAVLSFHAVFACISLISQDIAKMR 70 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~~~v~~~i~~ia~~va~~~ 70 (454) |--. ..++.........+...+..+++.+.. ..+.. +...-...|.+++.++++|+.+++.+-+-+ T Consensus 1 ~~~~----~~a~~~~~~~~a~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~l~~lY~~~~l~r~iVd~~a~d~~r~g 76 (461) T protein:vir:80 1 MYSI----DKAKQAKIDSKIVNRNDFMVGHGKANSRDKLTRQTPGNGQKLDLKACENLYASNSIAMNIVDIISEDMVRAG 76 (461) T ss_pred Cccc----hhhhhhhhhhhhhhhhHHHhhcCCcchhhhhhccccCcccccCHHHHHHHHHhCCccchhhccchHHhhcCC Confidence 3221 000000000000111122222211100 00111 111112456678999999999999999988 Q ss_pred eEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEee-CCC------------CceeEEEE Q lcl|Aclame:pro 71 LRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIR-NAR------------GQIKELRI 137 (454) Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r-~~~------------G~~~~l~~ 137 (454) +++... ++ . ....+...+.+= ...+-+...+.+..++|.+++++.- +.+ +.+..+.. T Consensus 77 ~~i~~~-~~-~----~~~~~~~~~~~l----~~~~~l~~~~~~~rl~G~a~i~i~v~d~~~~~~~~~~pl~~~~~~~~~~ 146 (461) T protein:vir:80 77 WSLKTD-NK-E----MKKNIESKWRKL----KTKDRFQKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKTIKSIPY 146 (461) T ss_pred eeeecC-CH-H----HHHHHHHHHHHh----hHHHHHHHHHHhhcccccEEEEEEeecCCccccCccCCcccccccceeE Confidence 877421 11 1 111122222221 1233455556667899999988843 221 11123333 Q ss_pred ec---CcceEEE---EC----CCCcee-eEEec--------cccccccceeEEehhheEEeecCCCcCcccccchhhhhH Q lcl|Aclame:pro 138 LD---WNRVEPL---VA----DDGEVF-YRITP--------DRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAG 198 (454) Q Consensus 138 l~---~~~~~~~---~~----~~g~~~-~~~~~--------~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~ 198 (454) |+ +..+.+. .+ ..|... |.+.. ..+........+.++.+|||......+..+|.|.++.+. T Consensus 147 l~~~~~~~i~~~~~~~dp~sp~fg~P~~y~i~~~~~~~~~~~~~~~~~~~~~iH~SRii~~~~~~~~~~~~G~S~le~~~ 226 (461) T protein:vir:80 147 INTFNTQKVTQLYLNQDMFSEHFGEVEFFEVNRVSQLGEEILSGTTASTSEQIHRSRIIHEQGLRFEGETKGRSIFESLY 226 (461) T ss_pred EEeccccccchhhhcccCcCcccccceEEEEeccccccccccccccCccceEEccccEEEecCCCCCccccCcchHHHHH Confidence 32 2222221 11 112222 22221 111223345679999999999888888899999999999 Q ss_pred hHHHHHHHHHHHHHHHHhccCCcceeEecC--ccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHH Q lcl|Aclame:pro 199 LAATQGHHIQENSTSFFRNGGRPSGVIEIP--GSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQT 276 (454) Q Consensus 199 ~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~--~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~ 276 (454) +.|.....+......++.+...+. ++.+ .....+......+.++...+ ..++++++.+.+++.++.+..+ + T Consensus 227 ~~l~~~~~~~~~~~~l~~~~~~~v--~k~~~l~~~~~~~~~~~~~~~~~~~~---~~g~~~~d~~e~~e~~~~~lsg--l 299 (461) T protein:vir:80 227 DIITVMDTSLWSVGQILYDFAFKV--YKTDDIDALNKDDKANLTAMLDFMFR---TEALAIIKGDEQLTKESTNVSG--M 299 (461) T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc--eecchHHhhhchHHHHHHHHHHHhcC---CceEEEEcCCcceEEEecCcCC--H Confidence 999999999999998887765443 3443 22333444455556655443 3357888888899988877775 4 Q ss_pred HHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcC------cccce Q lcl|Aclame:pro 277 VEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQ-------CLQTLIESIELLLDEALET------GENES 343 (454) Q Consensus 277 ~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~-------~i~P~~~~ie~~l~~~l~~------~~~~~ 343 (454) .+..+.....||.+-+||...|.+...+..++.+....+|+.. -+.|+++.+-..|-+..+. +..+. T Consensus 300 ~~~l~~~~~~iaa~s~iP~t~L~G~s~g~~asge~D~~~yyd~i~~~qe~~l~p~le~l~~~i~~s~~~~~~~~~p~~~~ 379 (461) T protein:vir:80 300 KDLLDYGWDYLAGAVRMPKTVLKGQEAGTLTGAQYDVMNYYARVSSIQENRLRPQLEYLTRLLMWASDDCGPSIDPDSFE 379 (461) T ss_pred HHHHHHHHHHHhhhhcCCeeeeecccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc Confidence 5778899999999999999877655556667777777777543 3456666655555443322 22346 Q ss_pred eeecchhhhhcCHHHHH-------HHHHHHHhCCCcCHHHHHHHh-cCCCCCCccccccccccccccccccccccccCCC Q lcl|Aclame:pro 344 TEFDVTTLLRMDSERRM-------KTLGDAVKNTLLTPNEARKRE-NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFA 415 (454) Q Consensus 344 ~~f~~~~l~~~d~~~~~-------~~~~~~~~~g~~T~NE~R~~~-g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (454) +.|.|+.|...|.++++ +++.+++++|+++++|+|+.+ +.-..+.. .++..++. ...+ T Consensus 380 ~~i~f~~L~~~s~kekAe~~~~~a~a~~~~~~~g~is~~e~r~~l~~~~~~~~~------~~~~~~~~-~~~~------- 445 (461) T protein:vir:80 380 WAIEFNPLWNLDSKTDAEVRKLTAEADQIYIVNGVLDPDEVKETRFGRFGLENS------SKFSGDSA-EIDK------- 445 (461) T ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCC------ccCCCCCc-hhhh------- Confidence 78889999888887765 458889999999999999855 32211110 00000000 0000 Q ss_pred ccCcccCCCCCCcccCc Q lcl|Aclame:pro 416 SSGKTASVPQAVAASDG 432 (454) Q Consensus 416 ~~~~~~~~~~~~~~~d~ 432 (454) ..........+++.+| T Consensus 446 -~~~~~~~~~~~e~~~g 461 (461) T protein:vir:80 446 -LAKLVYDAYAKKNADG 461 (461) T ss_pred -hhhhccccccccCCCC Confidence 0000000011111111 No 118 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=99.85 E-value=8.5e-21 Score=130.63 Aligned_cols=413 Identities=10% Similarity=-0.010 Sum_probs=235.2 Q ss_pred hhhhccccccccccC-cccchhhhhhhh----hhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 5 LRRTRKNQKSGRDVR-EAGWTSLFQAVA----EPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 5 f~r~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) .+|..-.+...+... ...+.+.+.++. .++......... ..+..++.+.|.+|++.+...|.+++|.|....++ T Consensus 1 v~~~~l~~e~at~~~~~d~~~~~~~~l~~~~~~il~~a~~g~~~-~y~~l~~D~~i~s~l~~rk~av~~~~w~i~p~~~~ 79 (488) T protein:vir:99 1 MEKPALGREIATSGDGRDITRPFISGLQVPNDSILQRRGGNDLR-VYEEILSDAQVKTVWGQRQLAVVSREWKVEAGGDR 79 (488) T ss_pred CCccchhHHHHHHHhhhhhhccccCCCCCCChHHHHhhccCCHH-HHHHHhhChHHHHHHHHHHHHHhcCCceEEcCCCC Confidence 222110000000000 001111111111 001000000111 12445679999999999999999999999753322 Q ss_pred ccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC-C--ceeEEEEecCcceEEEECCCCceeeE Q lcl|Aclame:pro 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR-G--QIKELRILDWNRVEPLVADDGEVFYR 156 (454) Q Consensus 80 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~-G--~~~~l~~l~~~~~~~~~~~~g~~~~~ 156 (454) ... ......+..++.+ ..+.+++..++. .+.+|.+++++++..+ | .+..+.+.|+.++.... ++...+. T Consensus 80 ~~~-~~~ae~v~~~l~~----~~~~~~l~~~ld-a~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d~--~~~l~~~ 151 (488) T protein:vir:99 80 PID-QAAAEHLEQQLQR----VGWDRVTSKMLF-GVFYGYAVSELIYGRDDRYITLEAIKVRNRRRFRYDQ--DGGLRLL 151 (488) T ss_pred hHH-HHHHHHHHHHHhC----CCHHHHHHHHHh-hhhhcceeEEEEEeecCCeeeEeeeeeecccceeecC--CCceEEe Confidence 111 1111223344444 367788888764 6889999999987543 3 36688999998777543 3444333 Q ss_pred EeccccccccceeEEehh-heEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCc-cCCHH Q lcl|Aclame:pro 157 ITPDRNCGITEAVTVPAR-EVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPG-SITEE 234 (454) Q Consensus 157 ~~~~~~~~~~~~~~~~~~-~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~-~~s~e 234 (454) ... +.. ....++.. .++..++....+.++|.|.+..+.-..-......++...|...-|+|-.+.+.+. ..+++ T Consensus 152 ~~~--~~~--~g~~lp~~~~~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~~a~~~ 227 (488) T protein:vir:99 152 TPN--NMF--EGEPCPAPYFWHFSTGADNDDEPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTAVGRYDDKTATPE 227 (488) T ss_pred ccC--CCC--CccccccCceEEEEeecCCCCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeeeecCCCCCCHH Confidence 221 111 22344433 3444455566677899999999999999999999999999999999998888874 56788 Q ss_pred HHHHHHHHHHHHhcCcccCCceecCCCceeeecccc-chhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHH Q lcl|Aclame:pro 235 NAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFS-PVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALE 313 (454) Q Consensus 235 ~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~ 313 (454) +.+++.+.+.+.-+ + ..++++.|++++-++.+ .....|.+..++..++|+.++ +-..+.+...+++++..+... T Consensus 228 ek~~l~~av~~~~~--~--~~~viP~~~~ie~~ea~~~~~~~~~~li~~~d~~Isk~i-LGqtlts~~~~Gs~a~~~vh~ 302 (488) T protein:vir:99 228 DKAKLLAALHAIQT--D--SAIIMPAGMQAELLEAGRSGTADYKTLHDTMDATIAKVG-LGQVASTQGTPGRLGNDDLQA 302 (488) T ss_pred HHHHHHHHHHHHhc--C--cEEEecCCceeEEeecCCCChHHHHHHHHHHHHHHHHHH-hhhhhcccccccchhhHHHHH Confidence 88888777777642 2 34666766655544422 222357888899999998885 233333333334455444444 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCc-------ccceeeecchhhhhcCHHHHHHHHHHHHhC-CC-cCHHHHHHHhcCC Q lcl|Aclame:pro 314 QQYYSQCLQTLIESIELLLDEALETG-------ENESTEFDVTTLLRMDSERRMKTLGDAVKN-TL-LTPNEARKRENLP 384 (454) Q Consensus 314 ~~~~~~~i~P~~~~ie~~l~~~l~~~-------~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~-g~-~T~NE~R~~~g~~ 384 (454) ......+.-.++.|+..||+.|+.+ .....+|-++.....|.+.+++.+.++++. |+ ++..++|+.+|+| T Consensus 303 -~v~~d~~~aDa~~i~~tln~~li~~l~~~N~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~~G~~i~~~~i~e~~Gip 381 (488) T protein:vir:99 303 -DVRLDLVKADADLICESFNLGPARWLTEWNFPGAQPPRVYRVIEEPEDITAKAERDEKVFRMSGFRPTRGYVQETYGVE 381 (488) T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcCCceeEecCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHcCCC Confidence 4456778889999999999877643 112223444444568889999999999996 75 7888899999999 Q ss_pred CCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccccccccc---cHHHHHHHHHhcC Q lcl|Aclame:pro 385 PLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEH---DAVKAMFRGILKK 454 (454) Q Consensus 385 p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~a~~~~~~~~ 454 (454) +-..++....+.. ....+... ...+..+....+..+..+ ++..+.++.++++ T Consensus 382 ~~~~~~~~~~~~~--------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 436 (488) T protein:vir:99 382 VESTQAEATAPTP--------------STEFAEGD----QPSDPAAAMAPQLAEAMQPVVGNWTTQLRTLIEQ 436 (488) T ss_pred CcccccccccCCC--------------cccCCCCC----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 7554433221100 00000000 000000000000001111 1222334444444 No 119 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=99.85 E-value=1.7e-20 Score=129.01 Aligned_cols=413 Identities=11% Similarity=0.010 Sum_probs=240.0 Q ss_pred Ccchhhhhcccc------ccccccC-----cccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQ------KSGRDVR-----EAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKM 69 (454) Q Consensus 1 m~n~f~r~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~ 69 (454) ++..-.+-.+.. ....... ........+.....+ ........ ..+..++.+.|.+|++.+...|.++ T Consensus 5 i~~~~g~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~p~~~~il-~~~~~~~~-~y~~m~~D~~i~s~l~~Rk~av~~~ 82 (491) T protein:vir:79 5 LWVSPTEFVKFGEPDKSLSSQIATRARSIDFFALGMYLPNPDPVL-KALGKDIR-VYRELRADAHVGGCVRRRKAAVKAL 82 (491) T ss_pred eeCCCCCcccccccchhHHHHHhhhccccccccccccCcchhHHH-hhccCCHH-HHHHHhhChHHHHHHHHHHHHHhCC Confidence 222222211111 0011100 000111111111111 10011112 2244668999999999999999999 Q ss_pred ceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC-C--ceeEEEEecCcceEEE Q lcl|Aclame:pro 70 RLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR-G--QIKELRILDWNRVEPL 146 (454) Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~-G--~~~~l~~l~~~~~~~~ 146 (454) +|.|...+++.+ ....+..++.++ .+.+++..++ +.+.+|.+++++++... | .|..+.++|+.++... T Consensus 83 ~w~i~~~~~~~~----~a~~i~e~l~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d 153 (491) T protein:vir:79 83 EWGLDRGKAKSR----VAKSIADVFADL----DLSRIATEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPADWFVYD 153 (491) T ss_pred CcEEecCCCCHH----HHHHHHHHHhcC----CHHHHHHHHH-HhhhhcceeEEEEEeecCCeeeEEeeeeecccceeec Confidence 999976544322 112333444443 4677777765 46789999999987554 3 3668999999888754 Q ss_pred ECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEe Q lcl|Aclame:pro 147 VADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIE 226 (454) Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~ 226 (454) . ++...+.... + ......+++...|++++....+.++|.|.+..+.-..-......++...|.+.-|+|-.+.+ T Consensus 154 ~--~~~l~l~~~~--~--~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~igk 227 (491) T protein:vir:79 154 P--ENQLRFRSKE--H--WVQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGK 227 (491) T ss_pred c--CCceEEeecC--C--CCCceeecCCCeEEEEecCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEe Confidence 4 3444443322 1 12346678888999888888888999999999999999999999999999999999999999 Q ss_pred cCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeecc--ccc-hhhHHHHHHHHHHHHHHHHhccchhhhccccc Q lcl|Aclame:pro 227 IPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTT--FSP-VDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP 303 (454) Q Consensus 227 ~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~--~~~-~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~ 303 (454) .+...++++.+++.+.+.++.+ ++ .++++.|++++-+. ... ....|.+..++..++|+.+. +-..+... .+ T Consensus 228 y~~~a~~~ek~~l~~al~~~~~--~a--~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~i-LGqtlTt~-~~ 301 (491) T protein:vir:79 228 HPRSASDAETNLLLDRLEDMVQ--DA--VAVIPDDSSIEIKEAAGKSGSADVYERLLHFCRGEVSIAL-LGQNQTTE-AT 301 (491) T ss_pred cCCCCCHHHHHHHHHHHHHHhc--Ce--EEEecCCceeEEEeccCCCCChhHHHHHHHHHHHHHHHHH-hhhhhccC-cc Confidence 9888889888888888887642 23 46677766655543 222 22247788888888888766 21112211 33 Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-------ccceeeecchhhhhcCHHHHHHHHHHHHhCCC-cCHH Q lcl|Aclame:pro 304 PSSDNVEALEQQYYSQCLQTLIESIELLLDEALETG-------ENESTEFDVTTLLRMDSERRMKTLGDAVKNTL-LTPN 375 (454) Q Consensus 304 ~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~-------~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~-~T~N 375 (454) ++++..+.... .....+.-.+..|+..||+ |+.+ ......|.+.... .+.+.+++..+++++.|+ ++.+ T Consensus 302 gs~a~~~vh~~-v~~~i~~~D~~~i~~tln~-li~~l~~~N~~~~~~p~f~~~e~e-e~~~~~a~~~~~L~~~G~~i~~~ 378 (491) T protein:vir:79 302 STRASAQAGLE-VTDDIRDGDKAIVVEAMNM-LIRWICDLNFDGAARPVFDMWEQE-QVDEIQAGRDEKLTRAGARFTPA 378 (491) T ss_pred cchhhHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcceEeecCcC-chhHHHHHHHHHHHhCCCccCHH Confidence 44555444333 4456677788888888886 5432 1123445554432 223557899999999997 8889 Q ss_pred HHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccccccccc----ccHHH---HHH Q lcl|Aclame:pro 376 EARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETE----HDAVK---AMF 448 (454) Q Consensus 376 E~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~---a~~ 448 (454) ++|+.+|+|+-+.+........ +....... . .....+..+..+....+.. +.+.. +.+ T Consensus 379 ~~~e~~Gip~~~~~e~~~~~~~------------~~~~~~~~-~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i 443 (491) T protein:vir:79 379 YFKRAYNLQDGDLDERPLPVSA------------VDAVGAAS-F--AEFEAPDQDALDAALNALSARDLNADAQALVAPL 443 (491) T ss_pred HHHHHhCCCCCCCCccccCcCc------------cccccccc-c--cccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH Confidence 9999999987555443321110 00000000 0 0011111111111111111 11111 233 Q ss_pred HHHhcC Q lcl|Aclame:pro 449 RGILKK 454 (454) Q Consensus 449 ~~~~~~ 454 (454) ++++++ T Consensus 444 ~~~l~~ 449 (491) T protein:vir:79 444 LKRIAN 449 (491) T ss_pred HHHHHh Confidence 344444 No 120 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=99.84 E-value=9.7e-20 Score=124.82 Aligned_cols=412 Identities=10% Similarity=0.013 Sum_probs=239.5 Q ss_pred Ccch----hhhhcccccc--ccccCcccchhhh------hhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MWNL----LRRTRKNQKS--GRDVREAGWTSLF------QAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAK 68 (454) Q Consensus 1 m~n~----f~r~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~ 68 (454) ++.. +.+....+.. ....+. .+.+.. ..+...+-.. .....+ .+..++.+.|.+|++.+...|.+ T Consensus 5 i~~~~g~p~~~~~~~~~~~~~ia~~~-~~~~~~~~~~~~~~~~~iLr~~-~~~~~~-y~~m~~D~~i~s~l~~Rk~av~~ 81 (491) T protein:vir:10 5 LWVSPTEFVTFGEPDKSLSSQIATRA-RSIDFFALGMYLPNPDPVLKAL-GKDIRV-YRELRADAHVGGCVRRRKAAVKA 81 (491) T ss_pred eeCCCCCccCcccCChHHHHHHHhhh-cccccccccCCccchHHHHHhc-CCCHHH-HHHHhhChHHHHHHHHHHHHHhC Confidence 2221 2111101100 000000 011110 1111111100 011122 23456799999999999999999 Q ss_pred cceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC-C--ceeEEEEecCcceEE Q lcl|Aclame:pro 69 MRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR-G--QIKELRILDWNRVEP 145 (454) Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~-G--~~~~l~~l~~~~~~~ 145 (454) ++|.|...+++.+ ....+..++.++ .+.+++..++ +.+.+|.++.++++... | .+..+.++|+.++.. T Consensus 82 ~~w~i~~~~~~~~----~~e~v~e~l~~~----~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~ 152 (491) T protein:vir:10 82 LEWGLDRGKAKSR----VAKSIADVFADL----DLSRIVTEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPADWFVY 152 (491) T ss_pred CCcEEecCCCCHH----HHHHHHHHHhcC----CHHHHHHHHH-HhhhhcceeEEEEEeecCCeeEEEEeeeecccceee Confidence 9999976544322 122334444443 5778888876 56889999999987654 3 366899999988875 Q ss_pred EECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeE Q lcl|Aclame:pro 146 LVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVI 225 (454) Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l 225 (454) .. ++...+.... .......+++...|++++....+.++|.|.+..+.-..-......++...|...-|.|-.+. T Consensus 153 d~--~~~l~~~~~~----~~~~g~~l~~~k~i~~~~~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~ig 226 (491) T protein:vir:10 153 DP--ENQLRFRSKD----HWMQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVG 226 (491) T ss_pred cc--CCceEEecCC----CCCCcceecCCCEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE Confidence 44 3444443221 12234567888888888888888899999999999999999999999999999999999999 Q ss_pred ecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeecc--ccchhh-HHHHHHHHHHHHHHHHhccchhhhcccc Q lcl|Aclame:pro 226 EIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTT--FSPVDS-QTVEQLKMTAEIVCSVFRVPAYKIGVGQ 302 (454) Q Consensus 226 ~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~--~~~~d~-~~~e~~~~~~~~Ia~~fgvp~~~lg~~~ 302 (454) +.+...++++.+++.+.+.++.+ + ..++++.|++++-+. .+.... .|.+..++..++|+.+.- -..+... . T Consensus 227 ky~~~a~~~ek~~l~~al~~~~~--~--a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iL-GqtlTt~-~ 300 (491) T protein:vir:10 227 KHPRSASDGEKNLLLDCLEDMVQ--D--AVAVVPDDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIALL-GQNQTTE-A 300 (491) T ss_pred ecCCCCCHHHHHHHHHHHHHHhc--C--cEEEecCCceeEEEecCCCCCChhHHHHHHHHHHHHHHHHHh-hhhcccC-c Confidence 99988899999888888888742 2 346677776665543 222222 477788888888877741 1122211 2 Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-------ccceeeecchhhhhcCHHHHHHHHHHHHhCCC-cCH Q lcl|Aclame:pro 303 PPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETG-------ENESTEFDVTTLLRMDSERRMKTLGDAVKNTL-LTP 374 (454) Q Consensus 303 ~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~-------~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~-~T~ 374 (454) +++++..+... ......+.-.+..|+..||+ |+.+ ...+.+|.+.... .+.+.+++.+.++++.|+ ++. T Consensus 301 ~gs~a~~~vh~-~v~~di~~~D~~~i~~tln~-li~~l~~~N~~~~~~p~f~~~~~~-e~~~~~a~~~~~L~~~G~~i~~ 377 (491) T protein:vir:10 301 TSTRASAQAGL-EVTDDIRDGDKAVVSEAMNM-LIRWICDLNFDGADRPVFDMWEQE-QVDEIQAGRDQKLTQAGARFTP 377 (491) T ss_pred ccchhHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcceEEecCcC-chhHHHHHHHHHHHhCCCcCCH Confidence 34454444433 34456667778888888885 5432 1123455555432 334678999999999997 888 Q ss_pred HHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccccccccccc----HH---HHH Q lcl|Aclame:pro 375 NEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHD----AV---KAM 447 (454) Q Consensus 375 NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----~~---~a~ 447 (454) .++|+.+|+|+-+.+....... .+...... .......+..+..+....+...+ +. .+. T Consensus 378 ~~i~e~~Gip~~~~~~~~~~~~------------~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 442 (491) T protein:vir:10 378 AYFKRAYNLQDGDLDERPLPVS------------AVDTVGAA---SFAEFEAPDQDALDAALNTLSARDLNADAQALVAP 442 (491) T ss_pred HHHHHHhCCCCCCcCccccccC------------CCCCcccc---cccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH Confidence 9999999998654443221100 00000000 00001111111111111111111 11 123 Q ss_pred HHHHhcC Q lcl|Aclame:pro 448 FRGILKK 454 (454) Q Consensus 448 ~~~~~~~ 454 (454) ++.++++ T Consensus 443 i~~~l~~ 449 (491) T protein:vir:10 443 LLKRIAN 449 (491) T ss_pred HHHHHHh Confidence 3333444 No 121 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=99.83 E-value=1.3e-19 Score=124.04 Aligned_cols=423 Identities=9% Similarity=-0.042 Sum_probs=239.8 Q ss_pred Ccchh---hhhccccccccc--cCcccchhhhhh-hhhhccc-------cccCCcccc------HHHHHhhHHHHHHHHH Q lcl|Aclame:pro 1 MWNLL---RRTRKNQKSGRD--VREAGWTSLFQA-VAEPFAG-------AWQQGVKAD------PEAVLSFHAVFACISL 61 (454) Q Consensus 1 m~n~f---~r~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~------~~~~~~~~~v~~~i~~ 61 (454) |--++ .|-......... ..-.+....+.. ....++. ....+..+. .+-..+.+.|.+|++. T Consensus 1 m~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iL~~a~~gd~~~~~~L~~dm~~~D~hi~s~l~~ 80 (512) T protein:vir:19 1 MGRILDISGQPFDFDDEMQSRSDELAMVMKRTQEHPSSGVTPNRAAQMLRDAERGDLTAQADLAFDMEEKDTHLFSELSK 80 (512) T ss_pred CcceeCCCCCccccccccccccchhcccchhhccccccCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 44444 332221111100 000000010100 0000000 000111111 1112368899999999 Q ss_pred HHHhhcccceEEEeccccccceehhhhHHHHhh-hhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC---CCceeEEEE Q lcl|Aclame:pro 62 ISQDIAKMRLRLMQTDAQGIRRETRRGDIARLC-RRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA---RGQIKELRI 137 (454) Q Consensus 62 ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~---~G~~~~l~~ 137 (454) +...|.+++|.|....++..........+..++ ..| ++.+++..++. .+.+|-+++++++.. ...|..+.+ T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~----~f~~~~~~lld-A~~~G~s~~Ei~w~~~~g~~~~~~~~~ 155 (512) T protein:vir:19 81 RRLAIQALEWRIAPARDASAQEKKDADMLNEYLHDAA----WFEDALFDAGD-AILKGYSMQEIEWGWLGKMRVPVALHH 155 (512) T ss_pred HHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcCC----CHHHHHHHHHh-hhhhcceeeeeEeeeeCCceeeeeeee Confidence 999999999999764432221111111222233 233 36677777654 677999999998743 345778999 Q ss_pred ecCcceEEEECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 138 LDWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRN 217 (454) Q Consensus 138 l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~n 217 (454) +++.++....+..+...++ . . ......+++...|+.++....+.++|.|.+..+.-..-......+....|... T Consensus 156 r~~~~f~~~~~~~~~lr~~--~--~--~~~G~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~ 229 (512) T protein:vir:19 156 RDPALFCANPDNLNELRLR--D--A--SYHGLELQPFGWFMHRAKSRTGYVGTNGLVRTLIWPFIFKNYSVRDFAEFLEI 229 (512) T ss_pred eccccceeccCCCcEEEec--C--C--CCCceeecCCceEEEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9998887766544333322 1 1 12335677788888888888888999999999999999999999999999999 Q ss_pred cCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeecccc-chhhHHHHHHHHHHHHHHHHhccchh Q lcl|Aclame:pro 218 GGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFS-PVDSQTVEQLKMTAEIVCSVFRVPAY 296 (454) Q Consensus 218 g~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~~fgvp~~ 296 (454) -|.|-.+.+.+...++++.+++.+.+.++-+ + ..++++.|++++-+..+ .....|.+..++..++|+.+. +-.. T Consensus 230 yG~P~~igky~~~a~~~ek~~L~~al~~~~~--~--a~~iiP~~~~ie~~ea~~~~~~~y~~li~~~d~~Isk~i-LGqt 304 (512) T protein:vir:19 230 YGLPMRVGKYPTGSTNREKATLMQAVMDIGR--R--AGGIIPMGMTLDFQSAADGQSDPFMAMIGWAEKAISKAI-LGGT 304 (512) T ss_pred cCCCeeEEecCCCCCHHHHHHHHHHHHHHhh--C--cEEEecCCceEEEeecCCCCHHHHHHHHHHHHHHHHHHH-hhhh Confidence 9999999999888888888888888888742 2 35677777666544432 233457888899999998874 1111 Q ss_pred hhcc-cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-----------cceeeecchhhhhcCHHHHHHHHH Q lcl|Aclame:pro 297 KIGV-GQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGE-----------NESTEFDVTTLLRMDSERRMKTLG 364 (454) Q Consensus 297 ~lg~-~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~-----------~~~~~f~~~~l~~~d~~~~~~~~~ 364 (454) +... ..+++++.. +.........+.-.++.|+..||+.|+.+. ....+|.++.....|.+..++.+. T Consensus 305 lTs~~g~~Gs~a~~-~vh~ev~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~f~~~e~eDl~~~a~~~~ 383 (512) T protein:vir:19 305 LTTEAGDKGARSLG-EVHDEVRREIRNADVGQLARSINRDLIYPLLALNSDSTIDINRLPGIVFDTSEAGDITALSDAIP 383 (512) T ss_pred hcccccccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCChhhHHHHHHHHH Confidence 1111 122234433 334445667788899999999999886531 112345555555678888888888 Q ss_pred HHHhCCC-cCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccccccccccH Q lcl|Aclame:pro 365 DAVKNTL-LTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDA 443 (454) Q Consensus 365 ~~~~~g~-~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 443 (454) ++. .|+ ++..++|+.+|+|...+++....+... +++........... ...+..+..+.. .+ .... T Consensus 384 ~l~-~G~~i~~~~i~e~~Gip~~~~~e~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~d~~-~~-~~~~ 449 (512) T protein:vir:19 384 KLA-AGMRIPVSWIQEKLHIPQPVGDEAVFTIQPV----------VPDNGSQKEAALSA-EDIPQEDDIDRM-GV-SPED 449 (512) T ss_pred HHh-cCCCCCHHHHHHHhCCCCCCCccccccCCCc----------cccccccccccccc-cCCCchhhHhHH-hh-hHHH Confidence 876 564 888999999999754444333221100 00000000000000 000111111000 00 0111 Q ss_pred HHHHHHHHhcC Q lcl|Aclame:pro 444 VKAMFRGILKK 454 (454) Q Consensus 444 ~~a~~~~~~~~ 454 (454) ....++.+++. T Consensus 450 ~~~~~~~~~~~ 460 (512) T protein:vir:19 450 WQRSVDPLLKP 460 (512) T ss_pred HHHHHHHHHHH Confidence 12223333333 No 122 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.83 E-value=6e-21 Score=131.46 Aligned_cols=432 Identities=10% Similarity=0.022 Sum_probs=234.5 Q ss_pred Ccchhhhhcccc----------ccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQ----------KSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMR 70 (454) Q Consensus 1 m~n~f~r~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~ 70 (454) |-.++.-..+.. .........+|.+.......-..........-+...+..|+.+..||+.+...+-... T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~w~~~~~s~~~~i~~~~~~lr~RaRdl~rNn~~a~~av~~~~~nvVG~G 82 (530) T protein:vir:38 3 IPSLVGPDGKTSLREYAGYHGGGGGFGGQLRGWNPPSESADAALLPNYSRGNARADDLVRNNGYAANAVQLHQDHIVGSF 82 (530) T ss_pred cceeecCccccchHHHhhhhcccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhCCC Confidence 111111000000 0001111112211100000000000000111123345568999999999988888778 Q ss_pred eEEEeccc------cccce----ehhhhHHHHhhhhccc------cCCHHHHHHHHHHHHHHhCCeEEEEeeCCC-C--c Q lcl|Aclame:pro 71 LRLMQTDA------QGIRR----ETRRGDIARLCRRPNA------QQNRIQFFELWLNAKLRHGNTVVLKIRNAR-G--Q 131 (454) Q Consensus 71 ~~~~~~~~------~~~~~----~~~~~~~~~l~~~pn~------~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~-G--~ 131 (454) +.+...-+ ++... ..-...+..|.+.|+. .++++++-..++..++..|++|+.+.+... | . T Consensus 83 i~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~~~~~~g~~~ 162 (530) T protein:vir:38 83 FRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGELCVQATWDSDSTRLF 162 (530) T ss_pred ceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCceEEEeeeccCCCCcc Confidence 87654311 11111 1112234455556553 468899999999999999999998876543 3 3 Q ss_pred eeEEEEecCcceEE--------------EECCCCceeeEEecccc---cccc------ceeEEehhheEEeecCCCcCcc Q lcl|Aclame:pro 132 IKELRILDWNRVEP--------------LVADDGEVFYRITPDRN---CGIT------EAVTVPAREVIHDRFNCFFHPL 188 (454) Q Consensus 132 ~~~l~~l~~~~~~~--------------~~~~~g~~~~~~~~~~~---~~~~------~~~~~~~~~vih~~~~~~~~~~ 188 (454) +..|.+|+|+.+.. ..|..|....|+..... .... ....++.++|||+......++. T Consensus 163 ~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~vlH~f~~~r~gQ~ 242 (530) T protein:vir:38 163 RTQFKMVSPKRVSNPNNIGDTRNCRAGVKINDSGAALGYYVSDDGYPGWMAQNWTYIPRELPGGRPSFIHVFEPMEDGQT 242 (530) T ss_pred ceEEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEEeeccCCCccccccceeeeeeccChhHeEeeccccCCCcc Confidence 56788999888763 33445544433332111 0001 1244677799999988888999 Q ss_pred cccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCC-----------HHHHHHHHHHHHH---HhcC----c Q lcl|Aclame:pro 189 IGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSIT-----------EENAKKLKSNWDS---GYTG----E 250 (454) Q Consensus 189 ~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s-----------~e~~~~~~~~~~~---~~~g----~ 250 (454) .|+|.+..+...+.-...-.+......+-.+...++|+.+.+.. +++...+...... .+.. - T Consensus 243 RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (530) T protein:vir:38 243 RGANAFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGADNKEQQSKLTGWLGEMAAYYSAAPVRL 322 (530) T ss_pred cCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeeccCCccccccccccCCcccccccccccchhhhhcccccceec Confidence 99999999999998888888888777777777777776543211 1111111111111 1110 1 Q ss_pred ccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhh-cccccccccCHHHHHHHHHHH---------- Q lcl|Aclame:pro 251 NAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKI-GVGQPPSSDNVEALEQQYYSQ---------- 319 (454) Q Consensus 251 n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l-g~~~~~~~~n~e~~~~~~~~~---------- 319 (454) ..|.+..|..|.+++..+-+-...+|.+..+...+.||+++|||-+.| |..+..|||++.+....+++. T Consensus 323 ~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~ 402 (530) T protein:vir:38 323 GGARVPHLLPGDSLNLQSAQDTDNGYSTFEQSLLRYIAAGLGVSYEQLSRNYSQMSYSTARASANESWAYFMGRRKFVAS 402 (530) T ss_pred cCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHH Confidence 345677889999999888775567899999999999999999999866 666777898776665555433 Q ss_pred -HHHHHHH-HHHHHHHHhhcC-cccc------------eeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCC Q lcl|Aclame:pro 320 -CLQTLIE-SIELLLDEALET-GENE------------STEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLP 384 (454) Q Consensus 320 -~i~P~~~-~ie~~l~~~l~~-~~~~------------~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~ 384 (454) .+.|+.. +++.++.+-.++ +.+. ...|-.-.....|+...+++...++++|+.|.-++-...|.+ T Consensus 403 ~~~~pi~~~wl~~av~~G~i~~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~G~D 482 (530) T protein:vir:38 403 RQACQMFLCWLEEAIVRRVVTLPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKRGDD 482 (530) T ss_pred HHhhHHHHHHHHHHHHcCCccCCCCCCCCchhhHHhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCC Confidence 2233332 234433332222 1111 112222234456999999999999999999999988888988 Q ss_pred CCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccc Q lcl|Aclame:pro 385 PLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKA 435 (454) Q Consensus 385 p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 435 (454) +.+--+.+---.....--++...........+ ....++.++++.++.+ T Consensus 483 ~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~---~~~~~~~~~~d~~~~a 530 (530) T protein:vir:38 483 YQEIFAQQVRESMERRAAGLNPPAWAAAAFEA---GVKKSNEEEQDGARAA 530 (530) T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcccccCC---CCCCCCCCCCCCCCCC Confidence 75332221100000000000000011111100 1111111111111111 No 123 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=99.83 E-value=4.8e-21 Score=131.96 Aligned_cols=374 Identities=11% Similarity=0.051 Sum_probs=208.9 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhh---ccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEP---FAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTD 77 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~ 77 (454) |- +..++...+-+..++ +..+.......-...|.+++.++++|+.+|+.+.+-.|++...+ T Consensus 1 ~~----------------~~D~~~n~~~gg~~~~~~~~~~~~~~~~~l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~~~~ 64 (422) T protein:vir:10 1 MV----------------KTDSYANIFLGGSDGSEIYGSLQNQAPTILASLYADNALVRRIIDTIPETALAAGFHIDGID 64 (422) T ss_pred Cc----------------cchhhHHHHcCCCCCccccCcccccCHHHHHHHHHhChhhHHHHhhhhHHHhcCCccccCCC Confidence 11 111111111110000 00011111111234577899999999999999999999884211 Q ss_pred ccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEee-C---------CCCceeEEEEecCcceEEEE Q lcl|Aclame:pro 78 AQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIR-N---------ARGQIKELRILDWNRVEPLV 147 (454) Q Consensus 78 ~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r-~---------~~G~~~~l~~l~~~~~~~~~ 147 (454) .+ ... ...+..+ ...+-+..++....++|.+++++.. + ..|....+.++++..+++.. T Consensus 65 --~~-~~~-~~~~~~l--------~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~~~ 132 (422) T protein:vir:10 65 --DE-PAF-WSRWDDL--------EMTQNINDAWSWARLFGGAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKVQT 132 (422) T ss_pred --HH-HHH-HHHHHHh--------hHHHHHHHHHHhhccccceEEEEEecCCCCccccccccCceeeEEeeccccccchh Confidence 11 111 1112222 2234455556666789999888754 3 24567788999998888653 Q ss_pred CC-------CCce-eeEEeccccccccceeEEehhheEEeecC------CCcCcccccchhhh-hHhHHHHHHHHHHHHH Q lcl|Aclame:pro 148 AD-------DGEV-FYRITPDRNCGITEAVTVPAREVIHDRFN------CFFHPLIGLPPVYA-AGLAATQGHHIQENST 212 (454) Q Consensus 148 ~~-------~g~~-~~~~~~~~~~~~~~~~~~~~~~vih~~~~------~~~~~~~G~s~l~~-~~~~i~~~~~~~~~~~ 212 (454) .. .|.+ .|.+.. ...+....+.++.+||+.-. .+.+..+|.|++.. +.+.|.....+..... T Consensus 133 ~~~dp~s~~fg~P~~y~v~~---~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~ 209 (422) T protein:vir:10 133 REENPRNARFGEPLTYRITT---NESDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLAT 209 (422) T ss_pred cccCccccccCcceEEEEec---CCCCcceeeccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHH Confidence 22 1232 233322 11223467889999998432 35566789999986 7899999999999999 Q ss_pred HHHhccCCcceeEecCc---cC-CHHHHHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 213 SFFRNGGRPSGVIEIPG---SI-TEENAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIV 287 (454) Q Consensus 213 ~~~~ng~~p~~~l~~~~---~~-s~e~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~I 287 (454) ..+........ +++. -. +.......++++...... .+.+.+++..++.++++++.+..+ +.+......++| T Consensus 210 ~l~~~~~~~v~--~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsg--l~~~~~~~~~~i 285 (422) T protein:vir:10 210 QLLKRKQQAVW--KAKGLAELCDDSEGFGAARLRLAQVDNNSGVGQAIGIDAESEEYSVLNSDIGG--IDAFLDKKFDRI 285 (422) T ss_pred HHHHHhccccc--cchhHHHhcCCccchHHHHHHHHHHHHhcCCccceeEecCCcceEEEecccCC--hHHHHHHHHHHH Confidence 88777654433 3332 11 123344444555544333 234445555667889988877775 567789999999 Q ss_pred HHHhccchhhhcccccccc-cCHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHH- Q lcl|Aclame:pro 288 CSVFRVPAYKIGVGQPPSS-DNVEALEQQYYSQ-------CLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSER- 358 (454) Q Consensus 288 a~~fgvp~~~lg~~~~~~~-~n~e~~~~~~~~~-------~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~- 358 (454) |++.+||...|.+.+.+.. ++.+...++|+.. -+.|.++.+-.. +.... .+.|.|..|...+.++ T Consensus 286 aaa~~IP~t~L~G~s~~Glnatgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~~----i~~s~--~~~~~f~pL~~~sekek 359 (422) T protein:vir:10 286 VALSGIHEIILKNKNVGGVSSSQNTALETFHKLVDRKRNAELLPILEFLIPF----IVNAE--EWSVEFNPLAQESSKDK 359 (422) T ss_pred HhhhCCCeeeeccCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcccC--CcEEEeCCCCCCCHHHH Confidence 9999999997755444444 4567777777663 334444333222 22233 4556666777777665 Q ss_pred ------HHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccC Q lcl|Aclame:pro 359 ------RMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASD 431 (454) Q Consensus 359 ------~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 431 (454) .++++.+++++|+++++|+|+.+--.....+ +..+..+.+ ..+ ......+..++++| T Consensus 360 aei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~----~~~~~~~~~------~~~------~~~~~~~~~~~~~d 422 (422) T protein:vir:10 360 AEILEKNVNSIAALIAAGAMDIDEARDTLRTIAPEVK----INDGSVETE------VTI------SETSNDPLEVPTDD 422 (422) T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhccccc----CCCCCCccc------cch------hhcCCCCCCCCCCC Confidence 4566788999999999999998742211111 111111100 000 00000111111111 No 124 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=99.82 E-value=1.7e-20 Score=129.01 Aligned_cols=373 Identities=11% Similarity=0.076 Sum_probs=206.7 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhh--hhcc-ccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVA--EPFA-GAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTD 77 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~ 77 (454) ||+ ..++..+..+.. ..+. .....+.. -...|.+++.++++|+.+|+++.+..|++.... T Consensus 3 ~~~----------------~d~~~~~~~~~~~~~~~~~~~~~~~~~-l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~g~~ 65 (427) T protein:vir:10 3 IVK----------------HDGYNDIFNGGADGSPKPFFMSDASYH-VGSFYNDNATAKRIVDVIPEEMVTAGFKMSGVK 65 (427) T ss_pred ccc----------------cchHHHHhhcCCCCcccCccccCchHH-HHHHHHcCchhhhhhccchHHhhcCCccccCcc Confidence 111 011111111000 0000 01111211 235677899999999999999999999885211 Q ss_pred ccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEe-eC---------CCCceeEEEEecCcceEEEE Q lcl|Aclame:pro 78 AQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKI-RN---------ARGQIKELRILDWNRVEPLV 147 (454) Q Consensus 78 ~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~-r~---------~~G~~~~l~~l~~~~~~~~~ 147 (454) . . ..+...+.+= ...+-+..++....++|.+++++. ++ ..|.+..+.+++++.+++.. T Consensus 66 ~---~-----~~~~~~~~~l----~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~~g~l~~l~v~d~~~~~~~~ 133 (427) T protein:vir:10 66 D---E-----KEFKSLWDSY----KLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFAITVEK 133 (427) T ss_pred H---H-----HHHHHHHHHh----hHHHHHHHHHHhccccceeEEEEEecCCCccccccCCCcceeEEEEechhcccccc Confidence 1 1 1111112211 223345555666678999998874 22 35678899999998887653 Q ss_pred CC-------CCcee-eEEeccccccccceeEEehhheEEeecC------CCcCcccccchhh-hhHhHHHHHHHHHHHHH Q lcl|Aclame:pro 148 AD-------DGEVF-YRITPDRNCGITEAVTVPAREVIHDRFN------CFFHPLIGLPPVY-AAGLAATQGHHIQENST 212 (454) Q Consensus 148 ~~-------~g~~~-~~~~~~~~~~~~~~~~~~~~~vih~~~~------~~~~~~~G~s~l~-~~~~~i~~~~~~~~~~~ 212 (454) .. .|.+. |.+. .........++++.+|||.-. .+.+..+|.|++. .+.+.|.....+..... T Consensus 134 ~~~dp~s~~fg~P~~y~v~---~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~ 210 (427) T protein:vir:10 134 RVTNARSPRYGEPEIYKVS---PGDNMQPYLIHHSRVFIADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCESLAT 210 (427) T ss_pred cccCccccccCcceEEEEe---cCCCCcceEEccccEEEecCCCchhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHH Confidence 32 12232 3332 112234467899999998522 3456778999986 57788999988888888 Q ss_pred HHHhccCCcceeEecCc---cC-CHHHHHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 213 SFFRNGGRPSGVIEIPG---SI-TEENAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIV 287 (454) Q Consensus 213 ~~~~ng~~p~~~l~~~~---~~-s~e~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~I 287 (454) ..+....... ++++. -. +.......++++...... .+.+.+++..++.++++++.+..+ +.+......++| T Consensus 211 ~l~~k~~~~v--~k~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsg--l~~~~~~~~~~i 286 (427) T protein:vir:10 211 QILRRKQQAV--WKVKGLAEMCDDDDAQYAARLRLAQVDDNSGVGRAIGIDAETEEYDVLNSDISG--VPEFLSSKMDRI 286 (427) T ss_pred HHHHHhcccc--ccchhHHHHhcCccchHHHHHHHHHHHHhcCcccceeeecCCCceeEEecccCC--hHHHHHHHHHHH Confidence 8877755443 33321 11 112222333444433222 234455666667888888877765 456788899999 Q ss_pred HHHhccchhhhcccccccc-cCHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHH Q lcl|Aclame:pro 288 CSVFRVPAYKIGVGQPPSS-DNVEALEQQYYSQ-------CLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERR 359 (454) Q Consensus 288 a~~fgvp~~~lg~~~~~~~-~n~e~~~~~~~~~-------~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~ 359 (454) |++.+||...|-+.+.+.. ++.+....+|+.. .+.|.++.+-.. +.... .+.|.|..|...+.+++ T Consensus 287 aaa~~IP~t~L~G~sp~Glnstgd~D~~nyyd~i~~~Qe~~l~p~l~~l~~~----i~~s~--~~~~~f~pL~~~s~kEk 360 (427) T protein:vir:10 287 VSLSGIHEIIIKNKNVGGVSASQNTALETFYKLVDRKREEDYRPLLEFLLPF----IVDEE--EWSIEFEPLSVPSKKEE 360 (427) T ss_pred HhhhCCCeeeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCC--CcEEEeCCCCCCCHHHH Confidence 9999999997754444444 5557777777663 344544443332 22222 45666777777666554 Q ss_pred -------HHHHHHHHhCCCcCHHHHHHHh----cCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCc Q lcl|Aclame:pro 360 -------MKTLGDAVKNTLLTPNEARKRE----NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVA 428 (454) Q Consensus 360 -------~~~~~~~~~~g~~T~NE~R~~~----g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (454) ++++.+++++|+++++|+|+.+ +...+.++. ....+... +..+.++ +.++. T Consensus 361 aei~~~~a~a~~~~~~~gvi~~~e~r~~L~~~~~~~~~~~~~-------~~~~e~~~--~~~e~~p---------~~~e~ 422 (427) T protein:vir:10 361 SEITKNNVESVTKAITEQIIDLEEARDTLRSIAPEFKLKDGN-------NINIREPE--ETTEPEP---------GLGEK 422 (427) T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhhccccCCCCc-------cccccccc--hhcCCCC---------CCCCC Confidence 4677889999999999999877 222222211 11111111 1111100 11111 Q ss_pred ccCcc Q lcl|Aclame:pro 429 ASDGN 433 (454) Q Consensus 429 ~~d~~ 433 (454) ++|.+ T Consensus 423 ~~d~~ 427 (427) T protein:vir:10 423 LEDEN 427 (427) T ss_pred CCCCC Confidence 11111 No 125 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.82 E-value=3.3e-21 Score=132.84 Aligned_cols=423 Identities=13% Similarity=0.089 Sum_probs=233.9 Q ss_pred Ccchhhhhcc-------cc----cccc-----ccCcccchhhhhhhhhh---ccccccCCccccHHHHHhhHHHHHHHHH Q lcl|Aclame:pro 1 MWNLLRRTRK-------NQ----KSGR-----DVREAGWTSLFQAVAEP---FAGAWQQGVKADPEAVLSFHAVFACISL 61 (454) Q Consensus 1 m~n~f~r~~~-------~~----~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 61 (454) =.|++-|... .. .+.+ ..+..+|... +...++ .......-..-+...+..|+.+..+|+. T Consensus 7 ~~~~~dr~i~~~~~~~~~~~~~~~~~y~aa~~~r~~~~w~~~-~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av~~ 85 (505) T protein:vir:96 7 KPSLAQRMVNWAWYRYVEPQKNAARAFEAARRDRLGKAWLRR-ASRLSADEEIYADLASLVQRAREQSINNPYAKRFYQL 85 (505) T ss_pred ccchhhcccchhhhhhHHHHHHhhhhcccccCCCccccccCC-CCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH Confidence 1111111110 00 0000 0011111000 000000 0000000011122345568999999998 Q ss_pred HHHhhcc-cceEEEeccc--cccc-e---ehhhhHHHHhhhhcccc----CCHHHHHHHHHHHHHHhCCeEEEEeeCCCC Q lcl|Aclame:pro 62 ISQDIAK-MRLRLMQTDA--QGIR-R---ETRRGDIARLCRRPNAQ----QNRIQFFELWLNAKLRHGNTVVLKIRNARG 130 (454) Q Consensus 62 ia~~va~-~~~~~~~~~~--~~~~-~---~~~~~~~~~l~~~pn~~----~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G 130 (454) +...+-. ..+.+..... .+.. . ..-...+..|.+.+|+. ++++++-..++..++..|++|+.+++...+ T Consensus 86 ~~~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~ 165 (505) T protein:vir:96 86 LKNNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETLARDGEVLVREHRGYPN 165 (505) T ss_pred HHHHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHHhhCCceEEEEeecCCC Confidence 7777765 5665543211 1111 1 11123345555556643 678999999999999999999988754433 Q ss_pred -ceeEEEEecCcceEE----------------EECCCCceeeEEeccccc---------cccceeEEehhheEEeecCCC Q lcl|Aclame:pro 131 -QIKELRILDWNRVEP----------------LVADDGEVFYRITPDRNC---------GITEAVTVPAREVIHDRFNCF 184 (454) Q Consensus 131 -~~~~l~~l~~~~~~~----------------~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~~~vih~~~~~~ 184 (454) .+..|.+|+|+.+.. ..|..|....|+...... .......++.++|||+..... T Consensus 166 ~~~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~hPgd~~~~~~~~~~~~~rvpa~~vlH~f~~~r 245 (505) T protein:vir:96 166 KWGYALQILECDRLDLNYNADLQNGNRIRMSIELDAWERPVAYHLLVNHPGDNSYCYHYAGQTYERVPADEIIHTFVPWR 245 (505) T ss_pred CcceEEEEechhhcCCCCCcccCCcCeEEeceEECCCCceEEEEEeecCCCccccccccccccccccCHhHhhhhhcccC Confidence 466888899888853 233444444433322111 112345689999999998888 Q ss_pred cCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCcee Q lcl|Aclame:pro 185 FHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKY 264 (454) Q Consensus 185 ~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~ 264 (454) .++..|+|.+..+...+.-.....+......+-.+...++|+.+.+.......... ......-..|.+..|..|.++ T Consensus 246 ~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~---~~~~~~l~pG~i~~L~pGe~i 322 (505) T protein:vir:96 246 PHQNRGIPWTHASMVELHHIGEYRKSEMIAAELGAKKVGFYEQDPEAYDQPPEDDQ---GEIVEEVEAGTYQLLPYGIRF 322 (505) T ss_pred CccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCccCCCcccccc---CccccccCCceeeecCCCCee Confidence 89999999999999999888888888888877788788888765432111100000 001111135667889999999 Q ss_pred eeccccchhhHHHHHHHHHHHHHHHHhccchhhh-cccccccccCHHHHHHHHH-----------HHHHHHHHH-HHHHH Q lcl|Aclame:pro 265 NPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKI-GVGQPPSSDNVEALEQQYY-----------SQCLQTLIE-SIELL 331 (454) Q Consensus 265 ~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l-g~~~~~~~~n~e~~~~~~~-----------~~~i~P~~~-~ie~~ 331 (454) +.++-+-....|.+..+...+.||+.+|||-+.| |..+..|||++.+....++ ...++|+.. +++.+ T Consensus 323 ~~~~~~~p~~~~~~f~~~~lr~iaaglgi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a 402 (505) T protein:vir:96 323 KEHKIDHPHTNFGAFVKSSLRGVAAGMGPAYNRLAHDLEGVNFSSLRSGELDERDLYKLLQFFVVTELLERVAGNLISMS 402 (505) T ss_pred eeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9988776667899999999999999999998866 5556678887666555443 334445443 24443 Q ss_pred HHHhhcCccc----c--eeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccc-ccccc Q lcl|Aclame:pro 332 LDEALETGEN----E--STEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNY-SLEAL 404 (454) Q Consensus 332 l~~~l~~~~~----~--~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~-~~~~~ 404 (454) +-.-.++-.. . .+.|-.-.....|+...++....++.+|+.|.-|+-...|.++.+--+.+---.... .++ + T Consensus 403 ~l~G~i~~p~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~G-l 481 (505) T protein:vir:96 403 LLTQALPLNMVDIDRLSQYAFQPRGWDWVDPAKDSKAHSESIKNRTRSRSSIIRAAGDDPEDVFDEIAWEEQLMRDKG-V 481 (505) T ss_pred HHcCCcCCCCccchhhceeeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC-C Confidence 3332222111 1 123333334557999999999999999999999988888998754322221000000 000 0 Q ss_pred ccccccccCCCccCcccCCCCCCcccC Q lcl|Aclame:pro 405 SRRDAREDPFASSGKTASVPQAVAASD 431 (454) Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~d 431 (454) ....... ...............++ T Consensus 482 ~~~~~~~---~~~~~~~~~~~~~~~d~ 505 (505) T protein:vir:96 482 NPTPPEQ---ESKDATTDEEDDSASDD 505 (505) T ss_pred CCCCCCC---CCCCCCCCCCCCCCCCC Confidence 0000000 00000000000001111 No 126 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.81 E-value=1.9e-20 Score=128.66 Aligned_cols=432 Identities=11% Similarity=0.022 Sum_probs=233.8 Q ss_pred Ccchh-hhhcccccc--------------ccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MWNLL-RRTRKNQKS--------------GRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQD 65 (454) Q Consensus 1 m~n~f-~r~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ 65 (454) |-+.- .+....+.. ....+..+|.+..................-+...+..|+.+..+|+.+... T Consensus 1 ~~~p~~~~~~~~~~~~~~~~~~~y~~~a~~~~~~~~~w~p~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~~n 80 (533) T protein:vir:34 1 MKTPTIPTLLGPDGMTSLREYAGYHGGGSGFGGQLRSWNPPSESVDAALLPNFTRGNARADDLVRNNGYAANAIQLHQDH 80 (533) T ss_pred CCCchhhhhhcccccchHHHHHhhhhccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH Confidence 33331 111110000 000011111111000000000000000111223455689999999998888 Q ss_pred hcccceEEEeccc------cccce----ehhhhHHHHhhhhccc------cCCHHHHHHHHHHHHHHhCCeEEEEeeCCC Q lcl|Aclame:pro 66 IAKMRLRLMQTDA------QGIRR----ETRRGDIARLCRRPNA------QQNRIQFFELWLNAKLRHGNTVVLKIRNAR 129 (454) Q Consensus 66 va~~~~~~~~~~~------~~~~~----~~~~~~~~~l~~~pn~------~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~ 129 (454) +-.-.+.+...-+ +++.. ..-...+..+.+.++. .++++++...++..++..|++|+.+.+... T Consensus 81 vVG~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~ 160 (533) T protein:vir:34 81 IVGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHAFNGELFVQATWDTS 160 (533) T ss_pred hhCCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHHHHhCCceEEEeeeccC Confidence 8777777654211 11111 1112234455555553 358899999999999999999998865443 Q ss_pred -C--ceeEEEEecCcceEE--------------EECCCCceeeEEecccccc---cc------ceeEEehhheEEeecCC Q lcl|Aclame:pro 130 -G--QIKELRILDWNRVEP--------------LVADDGEVFYRITPDRNCG---IT------EAVTVPAREVIHDRFNC 183 (454) Q Consensus 130 -G--~~~~l~~l~~~~~~~--------------~~~~~g~~~~~~~~~~~~~---~~------~~~~~~~~~vih~~~~~ 183 (454) | .+..|..|+|+.+.. ..+..|....|+....... .. ....++.++|||+.... T Consensus 161 ~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~VlH~f~~~ 240 (533) T protein:vir:34 161 SSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQINDSGAALGYYVSEDGYPGWMPQKWTWIPRELPGGRASFIHVFEPV 240 (533) T ss_pred CCCccceEEEEechhhcCCCCCCCCCCceEeeeEECCCCCeEEEEEeecCCCCccccccceeeeeeccChhHeeeecccc Confidence 2 356888899888763 2333444333332211100 00 12346788999999988 Q ss_pred CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccC-----------CHHHHHHHHH---HHHHHhcC Q lcl|Aclame:pro 184 FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI-----------TEENAKKLKS---NWDSGYTG 249 (454) Q Consensus 184 ~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~-----------s~e~~~~~~~---~~~~~~~g 249 (454) ..++..|+|.+..+...+.-...-.+......+-.+...++|+.+.+. .....+.+.. .-...+.+ T Consensus 241 r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (533) T protein:vir:34 241 EDGQTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGANSQEQRERLTGWIGEIAAYYAA 320 (533) T ss_pred CCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCcccccccccCCCcccccccccccchhhhhccCc Confidence 889999999999999999888888888887777777777777654321 1111111111 11111111 Q ss_pred ----cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhh-cccccccccCHHHHHHHHHH------ Q lcl|Aclame:pro 250 ----ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKI-GVGQPPSSDNVEALEQQYYS------ 318 (454) Q Consensus 250 ----~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l-g~~~~~~~~n~e~~~~~~~~------ 318 (454) -..|.+..|..|.+++.++.+-....|.+..+...+.||+++|||-+.| |..+..|||++.+....+.+ T Consensus 321 ~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iAaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q 400 (533) T protein:vir:34 321 APVRLGGAKVPHLMPGDSLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSRNYAQMSYSTARASANESWAYFMGRR 400 (533) T ss_pred ceeeccCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHHHH Confidence 1246677899999999888776667899999999999999999999865 55567788887655554433 Q ss_pred -----HHHHHHHH-HHHHHHHHhhcC-cccc------------eeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHH Q lcl|Aclame:pro 319 -----QCLQTLIE-SIELLLDEALET-GENE------------STEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARK 379 (454) Q Consensus 319 -----~~i~P~~~-~ie~~l~~~l~~-~~~~------------~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~ 379 (454) ..++|+.. +++.++-.-.++ +.+. .+.|-.-.....|+...++....++.+|+.|.-|+-. T Consensus 401 ~~~~~~~~~pi~~~wl~~ail~G~i~~p~~~~~~~~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a 480 (533) T protein:vir:34 401 KFVASRQASQMFLCWLEEAIVRRVVTLPSKARFSFQEARSAWGNCDWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECA 480 (533) T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccCCCccCCCchhhHHhhhceeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHH Confidence 33344433 233333332221 1110 1223233345579999999999999999999999888 Q ss_pred HhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccc Q lcl|Aclame:pro 380 RENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKA 435 (454) Q Consensus 380 ~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 435 (454) ..|.++.+--+.+---.....--++.....+.... ........+++..++..+ T Consensus 481 ~~G~D~~ev~~q~a~e~~~~~~~gl~~~~~~~~~~---~s~~~~~~~~~~~~~~~~ 533 (533) T protein:vir:34 481 KRGDDYQEIFAQQVRETMERRAAGLKPPAWAAAAF---ESGLRQSTEEEKSDSRAA 533 (533) T ss_pred HcCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcCc---cCCCCCCCCCCcccCCCC Confidence 88998754322221000000000000001111000 000000011111111111 No 127 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=99.80 E-value=4e-20 Score=126.93 Aligned_cols=431 Identities=11% Similarity=-0.008 Sum_probs=236.1 Q ss_pred CcchhhhhccccccccccCcccc--hhh---------hhhhhhhccc-------cccCCccccHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGW--TSL---------FQAVAEPFAG-------AWQQGVKADPEAVLSFHAVFACISLI 62 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~i~~i 62 (454) |.+-..|................ ..+ ..+......+ .......-+.+.+..|+.+..+|+.+ T Consensus 1 m~~~~~r~~~~~a~~~~~~~~~~~~~~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~lr~RaRdL~rNn~~a~~av~~~ 80 (553) T protein:vir:63 1 MTKVTVRKLSEVTSGRPEQSASLGGGGLEGASRLSRETVSWNPSLRSPDALINPLKRIADARGRDMADNDGFTNGAVGYQ 80 (553) T ss_pred CcchhhhhhcccccccchhhhhhhcccccccccCCCcccccccCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH Confidence 77755554332222111111100 000 0000000000 00000001123345689999999998 Q ss_pred HHhhcccceEEEeccc-------cccce----ehhhhHHHHhhhhccc------cCCHHHHHHHHHHHHHHhCCeEEEEe Q lcl|Aclame:pro 63 SQDIAKMRLRLMQTDA-------QGIRR----ETRRGDIARLCRRPNA------QQNRIQFFELWLNAKLRHGNTVVLKI 125 (454) Q Consensus 63 a~~va~~~~~~~~~~~-------~~~~~----~~~~~~~~~l~~~pn~------~~~~~~f~~~~~~~~ll~G~~~i~~~ 125 (454) ...+-.-.+.+...-+ ++... ..-...+..|.+.++. .++++++-..++..++..|++|+.++ T Consensus 81 ~~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~ 160 (553) T protein:vir:63 81 RDSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGYVKTGEVLATAE 160 (553) T ss_pred HHhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHHHhCCceEEEee Confidence 8888777777653311 11111 1112334555555543 36889999999999999999999886 Q ss_pred eCCC-C--ceeEEEEecCcceEEE--------------ECCCCceeeEEeccccccc--------------cceeEEehh Q lcl|Aclame:pro 126 RNAR-G--QIKELRILDWNRVEPL--------------VADDGEVFYRITPDRNCGI--------------TEAVTVPAR 174 (454) Q Consensus 126 r~~~-G--~~~~l~~l~~~~~~~~--------------~~~~g~~~~~~~~~~~~~~--------------~~~~~~~~~ 174 (454) +... | .+..|.+|+|+++... .|..|....|+......+. .....++.+ T Consensus 161 ~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~~r~~~~~~v~a~ 240 (553) T protein:vir:63 161 WDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYKWKFVQQSKPWGRR 240 (553) T ss_pred eccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEeeccCCCccccccccccceeeeccccccChh Confidence 5432 2 2567889999888643 3344444433332211110 012358899 Q ss_pred heEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH-------------- Q lcl|Aclame:pro 175 EVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK-------------- 240 (454) Q Consensus 175 ~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~-------------- 240 (454) +|||+......++..|+|.+..++..+.-.....+......+-.+...++|+.+.+ ++...+.+. T Consensus 241 ~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~daeL~~a~i~A~~a~fi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 319 (553) T protein:vir:63 241 QVIHILEPREPDQSRGIADIVSGLKDMRMAKRFKEMSLQNAVINASYAAAIESELP-PEFIHSQMSGGSPNADMVGIFGK 319 (553) T ss_pred HheecccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCC-hhhhhhhcccccccccccccccc Confidence 99999988888999999999999999988888888888877777777777775432 111111111 Q ss_pred --HHHHHHhcC-----cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhh-cccccccccCHHHH Q lcl|Aclame:pro 241 --SNWDSGYTG-----ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKI-GVGQPPSSDNVEAL 312 (454) Q Consensus 241 --~~~~~~~~g-----~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l-g~~~~~~~~n~e~~ 312 (454) +.....+.+ -..|.+..|..|.+++-++.+-...+|.+..+...+.||+.+|||-+.| |..+..|||++.+. T Consensus 320 ~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D~s~~nYSS~R~~ 399 (553) T protein:vir:63 320 YMDALKAYVGGANNIQIDGAKIPHLFPGTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRDFSKANYSSIQAG 399 (553) T ss_pred cccccccccccccceeecCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHH Confidence 111111111 1356677889999999888775566899999999999999999998855 66677788887655 Q ss_pred HHHHHH-----------HHHHHHHHH-HHHHHHHhhc--Ccccce--------------eeecchhhhhcCHHHHHHHHH Q lcl|Aclame:pro 313 EQQYYS-----------QCLQTLIES-IELLLDEALE--TGENES--------------TEFDVTTLLRMDSERRMKTLG 364 (454) Q Consensus 313 ~~~~~~-----------~~i~P~~~~-ie~~l~~~l~--~~~~~~--------------~~f~~~~l~~~d~~~~~~~~~ 364 (454) ...+++ ..++|+... ++.++-+-.+ +..... +.|-.-.....|+...++... T Consensus 400 ~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a~l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~iDP~Ke~~A~~ 479 (553) T protein:vir:63 400 IAMTRRFLEGRKKMCADRLATEFFTLWLEEAIAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQIDQLKETQAAV 479 (553) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccchhhcchhhhhhhhceeeecCCccccChHHHHHHHH Confidence 555433 333443322 3333322111 111111 112222334569999999999 Q ss_pred HHHhCCCcCHHHHHHHhcCCCCCCcccc-----cc-ccccccccccccccccccCCCccCcccCCCCCCcccCccccccc Q lcl|Aclame:pro 365 DAVKNTLLTPNEARKRENLPPLAGGDAL-----YL-QQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITE 438 (454) Q Consensus 365 ~~~~~g~~T~NE~R~~~g~~p~~~~d~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 438 (454) .++.+|+.|.-|+-...|.++.+--+.+ ++ ..++. .+. .+......... ..+.+.++......+ T Consensus 480 ~~i~~G~~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~-~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~ 549 (553) T protein:vir:63 480 MRIDAGLSTYEREIARLGGDFRKSFAQRAREDALLKKYGLT-FNL-----SAKRSLGDGRD----AATGIAEDPAAAQTS 549 (553) T ss_pred HHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC-CCC-----CCccccCCCcc----cCCCCCCCCCCCCcc Confidence 9999999999998888898875332221 11 11111 111 00000000000 000001111000000 Q ss_pred cccc Q lcl|Aclame:pro 439 TEHD 442 (454) Q Consensus 439 ~~~~ 442 (454) ++.+ T Consensus 550 ~~~e 553 (553) T protein:vir:63 550 QQGE 553 (553) T ss_pred cccC Confidence 0001 No 128 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=99.79 E-value=3.8e-18 Score=116.07 Aligned_cols=418 Identities=12% Similarity=0.098 Sum_probs=218.3 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccc----------cccCCccccHHHHHhhHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAG----------AWQQGVKADPEAVLSFHAVFACISLISQDIAKMR 70 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~ 70 (454) |.. .+.....+.+.-..++.........+ .+.....+ .+.+++.+.|.+|++.+...|.+++ T Consensus 1 ~~~-------~~~~~~gl~p~rl~~i~~~~~~~~~~~~~~~~~~~Lr~~~~~~l-y~~m~~D~hi~s~l~~Rk~av~~~~ 72 (488) T protein:vir:95 1 MAD-------ITETQESLPPFRMGEVGSLGLKVKNGRIYEEPRQALRFPESIKT-FQLMMRDPAVAASVNIIKMFVRKVN 72 (488) T ss_pred CCC-------ccccCCCCCHHHHHHHHHHhhccccchhhccchhhhcccchHHH-HHHHhhChHHHHHHHHHHHHHhcCC Confidence 222 11111111111111111111000000 11122223 3445679999999999999999999 Q ss_pred eEEEeccccccceehh--hhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC-------------CCc--ee Q lcl|Aclame:pro 71 LRLMQTDAQGIRRETR--RGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA-------------RGQ--IK 133 (454) Q Consensus 71 ~~~~~~~~~~~~~~~~--~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~-------------~G~--~~ 133 (454) |.|....+........ ...+..++. |...++.+++..++ +.+.+|-+++++++.. +|. +. T Consensus 73 w~v~p~~~~~~d~~~~~~a~~v~~~l~--~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~~~~~~~~~~~~dg~~~~~ 149 (488) T protein:vir:95 73 WRFVPPKGKEQDPKMLERADFFNSLMD--DMEHDWADFINSVM-SFCTYGFCVNEKVYKKRQGKKGKYQSKFDDGLIGWA 149 (488) T ss_pred ceEecCCCCchhHHHHHHHHHHHHHHh--ccCccHHHHHHHHH-HhhcccceeeeeeeeccccccccccccccCCeeeee Confidence 9997543322211100 111222222 22345777777765 4688999999998753 232 45 Q ss_pred EEEEecCcceE-EEECCCCceeeEEecc-c----------cccccceeEEehhheEEeecCCCcCcccccchhhhhHhHH Q lcl|Aclame:pro 134 ELRILDWNRVE-PLVADDGEVFYRITPD-R----------NCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAA 201 (454) Q Consensus 134 ~l~~l~~~~~~-~~~~~~g~~~~~~~~~-~----------~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i 201 (454) .+.+.++.+.+ ...+.++......... . .......+.+|....|++++....+.++|.|.+..+.-.. T Consensus 150 ~i~~Rpq~~~~~f~~d~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~kfi~~~~~~~~g~p~g~gLlr~~~w~~ 229 (488) T protein:vir:95 150 KLPIRNQSTLDKWYFDEDFRRVTGVRQNLRNVSHIAGAINLGERPLTRKLPRAKFMLFKYDDEYGNPEGRSPLLNAYVPW 229 (488) T ss_pred eeeecCcccccceeeccCCCceeecccccccccccccccccccccccccccccceEEEeecCCCCccchhhHHHHHHHHH Confidence 56666664322 2233333222211110 0 0011234568888888888888888899999999999999 Q ss_pred HHHHHHHHHHHHHHhccCCcceeEecCcc----CCHHHHHHHHHHHHHHh----cCcccCCceecCCCceee-------- Q lcl|Aclame:pro 202 TQGHHIQENSTSFFRNGGRPSGVIEIPGS----ITEENAKKLKSNWDSGY----TGENAGKTAILSNGAKYN-------- 265 (454) Q Consensus 202 ~~~~~~~~~~~~~~~ng~~p~~~l~~~~~----~s~e~~~~~~~~~~~~~----~g~n~g~~~vl~~g~~~~-------- 265 (454) -......++...|....+.|--+...+.. .++++...+.+.+.++. .+..+| ++++.|+++. T Consensus 230 ~fK~~~~~~w~~f~Er~g~g~p~~~~p~~~~~~~~~~e~~~l~~a~~~i~~~~~~~~~ag--~iiP~g~~~~~k~~~~e~ 307 (488) T protein:vir:95 230 KYKVQIEEYEAVGVSRDLVGMPKIGLPPDYLDENAEPEKKAFVQYCKTVVNDMIANDRAG--LIWPRYIDPDTKEDIFEF 307 (488) T ss_pred HHHHHHHHHHHHHHHHhcccceeEeeccCCCCCcccHHHHHHHHHHHHHHHHhhccchhh--eeeccccccccchhhhhh Confidence 99999999999999876555544444322 33444444444444432 222233 4556555322 Q ss_pred -ecccc-chhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc---- Q lcl|Aclame:pro 266 -PTTFS-PVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETG---- 339 (454) Q Consensus 266 -~l~~~-~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~---- 339 (454) -++.. ..-..|.+..++..++|+.+.--..--.+....++++.. +.........+.-.++.|+..||+.|+++ T Consensus 308 ~l~~~~~~~~~~~~~li~~~d~~Isk~iLGqtLT~~~~~~Gs~Al~-~vh~ev~~~i~~aDa~~i~~tln~~li~~l~~~ 386 (488) T protein:vir:95 308 SLVSRQGAKAYDTGSIIDRYSKQIMMAFMSDVLAMGQSKYGSFSLA-DSKTSLLAMSVDILLKQIKNVINRDLVAQTYAL 386 (488) T ss_pred hccccccCCchhHHHHHHHHHHHHHHHHhccccccccCcchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 12221 122346677788888888776222111111122333333 33344556677788899999999977653 Q ss_pred ----ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCH-----HHHHHHhcCCCCCCcccccccccccccccccccccc Q lcl|Aclame:pro 340 ----ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTP-----NEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAR 410 (454) Q Consensus 340 ----~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~-----NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~ 410 (454) ...+.+|.++.....|.+..++.+.++++.|+.-+ +.+|+.+|+|+-+++.....+.... . ....+ T Consensus 387 Nfg~~~~~P~~~~~~~e~~Dl~~~ae~~~~L~~~G~~i~~~~~~~~i~e~~gip~~~~~e~~~~~~~~~--~---~~~~~ 461 (488) T protein:vir:95 387 NMWDDEEHVQITYDDIETPDLEAIGSYIQKTVAVGALEVDKELSNKLREHIGLPPADESQPVSEKLSPN--S---QSRSG 461 (488) T ss_pred cCCCCCCccEEEecCcChhhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCccccccCCCC--C---CCCCC Confidence 22334566676677888999999999999998654 5689999999765554433221000 0 00000 Q ss_pred ccCCCccCcccCCCCCCcccCccccccccccc Q lcl|Aclame:pro 411 EDPFASSGKTASVPQAVAASDGNKAITETEHD 442 (454) Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 442 (454) .....+.... +.++...+. +..+..+. T Consensus 462 ~~~~~~~~~~---~~~~~~~~~--~~a~~~~~ 488 (488) T protein:vir:95 462 DGYKTAGEGT---AKTPSAKDP--STANKANK 488 (488) T ss_pred cccCCCcccC---Ccccccccc--hhhhhccC Confidence 0000000000 011110000 00011101 No 129 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=99.78 E-value=1.8e-19 Score=123.29 Aligned_cols=422 Identities=11% Similarity=0.024 Sum_probs=225.4 Q ss_pred cchhhhhccccccccccCc-----ccchhhhhhhhhhccccc-------cCCccccHHHHHhhHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVRE-----AGWTSLFQAVAEPFAGAW-------QQGVKADPEAVLSFHAVFACISLISQDIAKM 69 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~ 69 (454) +||+.+...........+. .+-.....+...+..++. ..-..-+...+..|+.+..+|+.+...+-.- T Consensus 1 m~~~~~~~~a~~~~~~~~~~~~~y~aa~~~~~~~~~~~~s~d~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~~~vVG~ 80 (495) T protein:vir:10 1 MNMTPSGYQSLASGLLVPVGASAYEGASGGHRWQDIGDYGPDTAVASGIQTLRARSHHNVRNNPWATNAVATWVAAAVGN 80 (495) T ss_pred CCcccccccccchhhhhHHHhhhhhccccCcccCCCCCCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC Confidence 8888765433221111000 000000000000000000 0000011233456899999999998888666 Q ss_pred ceEEEeccccccceehhhhHHHHhhhhcc--ccCCHHHHHHHHHHHHHHhCCeEEEEeeC--CCC--ceeEEEEecCcce Q lcl|Aclame:pro 70 RLRLMQTDAQGIRRETRRGDIARLCRRPN--AQQNRIQFFELWLNAKLRHGNTVVLKIRN--ARG--QIKELRILDWNRV 143 (454) Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~l~~~pn--~~~~~~~f~~~~~~~~ll~G~~~i~~~r~--~~G--~~~~l~~l~~~~~ 143 (454) .+.......+......-...+..+.+++. -.++++.+...++..++..|++|+.+... ..| .+..|..|+|+.+ T Consensus 81 Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g~~~~~~lqliepd~l 160 (495) T protein:vir:10 81 GLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGLSVPLQLQIIEPDML 160 (495) T ss_pred CcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCCCccceEEEEechhhc Confidence 76654433332222222334444544432 24788999999999999999999887643 233 4678899999888 Q ss_pred EEE-----------------ECCCCceeeEEecccccc-------ccceeEEehhheEEeecCCCcCcccccchhhhhHh Q lcl|Aclame:pro 144 EPL-----------------VADDGEVFYRITPDRNCG-------ITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGL 199 (454) Q Consensus 144 ~~~-----------------~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~ 199 (454) ..- .+..|....|+......+ ......+++++|+|+. ....++..|+|.+..+. T Consensus 161 ~~~~~~~~~~~g~~i~~GIe~d~~Gr~vaY~i~~~hpgd~~~~~~~~~~~rvpA~~vlH~f-~~r~gQ~RGis~la~i~- 238 (495) T protein:vir:10 161 ASDIPDETLPSGGYVKGGIRFSNGGKRKAYCFYRNHPAESSLIGDPVDTVWIKAEHVLHVT-VLTVRSDAGAPWFQLLL- 238 (495) T ss_pred CCCCCCCCCCCCCEEEeceEECCCCceEEEEEeecCCCcccccccccceeeechhheEecc-ccCCCcccCcchhHHHH- Confidence 632 222333333332211111 1235679999999996 45668899999766544 Q ss_pred HHHHHHHHHHHHHHHHhccCCcceeEecCccCCH--HHHHH-HHHHHHHHhcCcccCCceecCCCceeeeccccchhhHH Q lcl|Aclame:pro 200 AATQGHHIQENSTSFFRNGGRPSGVIEIPGSITE--ENAKK-LKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQT 276 (454) Q Consensus 200 ~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~--e~~~~-~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~ 276 (454) .+.-.....+......+-.+...++|+.+.+... +.... ..+.-......-..|.+..|..|.+++.++.+.....| T Consensus 239 ~l~~l~~y~dael~~a~i~A~~~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~ 318 (495) T protein:vir:10 239 RLNELDQYEDAELVRKKTAALFAAFIQEATADSTGGPTIGQPKRSKGGKRITGLNPGTLQYLQPGQEVKFSNPADVGTTY 318 (495) T ss_pred HHHHhhHHHHHHHHHHHHhhhheeeeecCCCccccccccCccccccCcccceecCCceeeecCCCCeeeeeCCCCCCCCH Confidence 4655555555655555666666667665432110 00000 00000001111235677889999999998876555678 Q ss_pred HHHHHHHHHHHHHHhccchhhh-cccccccccCHHHHHHHHHHHH------------HHHHHH-HHHHHHHHhhcC-ccc Q lcl|Aclame:pro 277 VEQLKMTAEIVCSVFRVPAYKI-GVGQPPSSDNVEALEQQYYSQC------------LQTLIE-SIELLLDEALET-GEN 341 (454) Q Consensus 277 ~e~~~~~~~~Ia~~fgvp~~~l-g~~~~~~~~n~e~~~~~~~~~~------------i~P~~~-~ie~~l~~~l~~-~~~ 341 (454) .+..+...+.||+++|||-+.| |..+..|||++.+....+.+.. ++|+.. +++.++-.-.++ +.. T Consensus 319 ~~f~~~~lr~iaaglGi~Ye~ltgD~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~ 398 (495) T protein:vir:10 319 EPWLRYQLLSIAKGYGITYEMLTGDLRGVNYSSIRAGLLEFRRLCQQVQHHMIIHQFCRPVGRWFMDFAVASGAVVIPDY 398 (495) T ss_pred HHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCc Confidence 9999999999999999999866 6667778988766665554332 122222 122222221111 111 Q ss_pred c-------eeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccc-----cc-cccccccccccccc Q lcl|Aclame:pro 342 E-------STEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDAL-----YL-QQQNYSLEALSRRD 408 (454) Q Consensus 342 ~-------~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~-----~~-~~~~~~~~~~~~~~ 408 (454) . .+.|-.-.....|+...+++...++.+|+.|.-|+-...|+++.+--+.+ .+ ..++ +++. T Consensus 399 ~~~~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~G~~s~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl-~~~~----- 472 (495) T protein:vir:10 399 LQRRRYYNRVSWRTPRWEEVDPLKKHLADLGDVRAGFAPISDKQAERGYDMEELFDMISDANQLIDEYDL-RLDS----- 472 (495) T ss_pred hhhhHhhhccccccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-CCCC----- Confidence 0 11222233455799999999999999999999998888899874332221 11 1111 1111 Q ss_pred ccccCCCccCcccCCCCCCcccCccc Q lcl|Aclame:pro 409 AREDPFASSGKTASVPQAVAASDGNK 434 (454) Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~d~~~ 434 (454) .+... ++.+. .....++.++.++ T Consensus 473 ~p~~~-~~~~~--~~~~~~~~~~~~e 495 (495) T protein:vir:10 473 DPRYV-NGSGA--EQKSVMEAALNNE 495 (495) T ss_pred CCCcC-CCccC--CCCCCCCCCCCCC Confidence 11111 11111 0011111111211 No 130 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=99.76 E-value=1.7e-17 Score=112.53 Aligned_cols=408 Identities=10% Similarity=0.003 Sum_probs=225.8 Q ss_pred Ccchhhhhcccccccccc---Cc----ccchhh-hhhhhhhccc----------cccCCccccHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDV---RE----AGWTSL-FQAVAEPFAG----------AWQQGVKADPEAVLSFHAVFACISLI 62 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~---~~----~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~i~~i 62 (454) |. +|..++. +..+. .. ..+... ......++.+ .++.+..+ .+.+++.+.|.+|++.+ T Consensus 1 m~---k~~~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~~~l-y~~m~~D~hi~s~l~~R 75 (448) T protein:vir:79 1 MA---KRGRKPK-ELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDGLLV-YHKMLSDGTVKNALNYI 75 (448) T ss_pred CC---CCCCCCc-cccCcccccccccchhhhhhhhhhcccccccccccchhHhhccccchHH-HHHHhhChHHHHHHHHH Confidence 43 2222221 11111 00 000000 0000101111 11122222 34466789999999999 Q ss_pred HHhhcccceEEEeccccccceehhhhHHHHhhhhccc---cCCHHHHHHHHHHHHHHhCCeEEEEeeC--CCCc--eeEE Q lcl|Aclame:pro 63 SQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNA---QQNRIQFFELWLNAKLRHGNTVVLKIRN--ARGQ--IKEL 135 (454) Q Consensus 63 a~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~---~~~~~~f~~~~~~~~ll~G~~~i~~~r~--~~G~--~~~l 135 (454) ...|.+++|.|....++...... ...+..++..+.. ..++.+++..++. .+++|.+++++++. .+|. +..+ T Consensus 76 k~av~~~~w~v~p~~~~~~~~~~-ae~v~~~l~~~~~~~~~~~f~~~~~~~ld-a~~~G~s~~Eivw~~~~~g~~~~~~l 153 (448) T protein:vir:79 76 FGRIRSAKWYVEPASTDPEDIAI-AAFIHAQLGIDDASVGKYPFGRLFAIYEN-AYIYGMAAGEIVLTLGADGKLILDKI 153 (448) T ss_pred HHHHhcCCceEecCCCCHHHHHH-HHHHHHHhhhhhhhhccCCHHHHHHHHHH-hhhhcceeEEEEeeecCCCceecccc Confidence 99999999999653332221111 1123344444443 2456666766544 67899999999874 3554 4466 Q ss_pred EEecCcceE-EEECCCCceeeEEecccc---ccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHH Q lcl|Aclame:pro 136 RILDWNRVE-PLVADDGEVFYRITPDRN---CGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENS 211 (454) Q Consensus 136 ~~l~~~~~~-~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~ 211 (454) .+.++.+++ ...+.++...+....... ......+.+|..-++|+.+ ...+.++|.|.+..+.-..-......+.. T Consensus 154 ~~r~~~~~~~f~~~~d~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~-~~~g~p~g~gLlr~~~w~~~fK~~~~~~w 232 (448) T protein:vir:79 154 VPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVSGLEIPIWKTVVFLH-NDDGSFTGQSALRAAVPHWLAKRALILLI 232 (448) T ss_pred cccCCccccceeeecCCceEEeecCCcccccccCCCccccccceEEEEec-CccCCcccchhHHHHHHHHHHHHHHHHHH Confidence 666766433 223333333333221111 1112234567788888865 45567899999999999999999999999 Q ss_pred HHHHhccCCcceeEecCccCC--HHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 212 TSFFRNGGRPSGVIEIPGSIT--EENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCS 289 (454) Q Consensus 212 ~~~~~ng~~p~~~l~~~~~~s--~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~ 289 (454) ..|.+.-|.|--+.+.+.+.+ +++.+.+.+.+.+...|.+++ ++++.|++++-++......++.+..++..++|+. T Consensus 233 ~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~--~iiP~~~~ie~~ea~~~~~~~~~~i~~~d~~Isk 310 (448) T protein:vir:79 233 NHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHG--IILPDDWKFDTVDLKSAMPDAIPYLTYHDAGIAR 310 (448) T ss_pred HHHHHHcCCceEEEecCCCCCcCHHHHHHHHHHHHHHhcCCceE--EEecCCceEEEEecCCCcccHHHHHHHHHHHHHH Confidence 999999999988888876544 456666666666665565554 6688888776665544445577788888888877 Q ss_pred HhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--------ccceeeecchhhhhcCHHHHHH Q lcl|Aclame:pro 290 VFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETG--------ENESTEFDVTTLLRMDSERRMK 361 (454) Q Consensus 290 ~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~--------~~~~~~f~~~~l~~~d~~~~~~ 361 (454) +. +-..+....+.++++...+.........+.--++.|+..||+.|+++ ...+-+|.++.....|.+..++ T Consensus 311 ~i-LGqtlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~li~~l~~lNfg~~~~~P~~~f~~~e~~Dl~~~a~ 389 (448) T protein:vir:79 311 AL-GIDFNTVQLNMGVQAINIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPSATRFPRLTFEMEERNDFSAAAN 389 (448) T ss_pred HH-hhhhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcEEEecCCChHHHHHHHH Confidence 76 22222222222233333333334455667778899999999887653 1223345555556678888899 Q ss_pred HHHHHHhCCCcCHHHHHHHhcCCC-CCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccccccccc Q lcl|Aclame:pro 362 TLGDAVKNTLLTPNEARKRENLPP-LAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETE 440 (454) Q Consensus 362 ~~~~~~~~g~~T~NE~R~~~g~~p-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 440 (454) .+.+++..+-...+-+|+.+|+|. .|+.+ . ..............++.+ ++..=+.. T Consensus 390 ~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~-~------------------~a~~~~~~~~~~~~~~~~----~~~~~~~~ 446 (448) T protein:vir:79 390 LMGMLINAVKDSEDIPTELKALIDALPSKM-R------------------RALGVVDEVREAVRQPAD----SRYLYTRR 446 (448) T ss_pred HhhhhhccchhhHHHHHHhhcCCCCCCCcc-c------------------cccCCCCcccccccCCcc----ccchhhcc Confidence 999998876554455677778763 22211 0 000000000000000000 00000000 Q ss_pred cc Q lcl|Aclame:pro 441 HD 442 (454) Q Consensus 441 ~~ 442 (454) .. T Consensus 447 ~~ 448 (448) T protein:vir:79 447 RR 448 (448) T ss_pred cC Confidence 00 No 131 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.75 E-value=9.5e-19 Score=119.39 Aligned_cols=438 Identities=12% Similarity=0.007 Sum_probs=227.5 Q ss_pred cchhhhhccccc------c--cc----ccCcccchhhhhhhhhhcc------ccccCCccccHHHHHhhHHHHHHHHHHH Q lcl|Aclame:pro 2 WNLLRRTRKNQK------S--GR----DVREAGWTSLFQAVAEPFA------GAWQQGVKADPEAVLSFHAVFACISLIS 63 (454) Q Consensus 2 ~n~f~r~~~~~~------~--~~----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~i~~ia 63 (454) +|||-|....-. + +. ....+.-.....+...+.. ........-+.+.+..|+.+..+|+.+. T Consensus 1 Mn~iDr~i~~~sP~~a~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av~~~~ 80 (548) T protein:vir:95 1 MNLIDRLLEPLAPELVARRLAAREAIQAYEAARPGRTHKAKRQPLGADTSLQKSAVSMREQCRKLDEDHDLVTGLLDRLE 80 (548) T ss_pred CchHHhHhhhcchHHHHHHHHhHHHhccccccCccccccccCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 666654432210 0 00 0000000011111110000 0000000011233446899999999886 Q ss_pred Hhhcc-cceEEEe--ccccccce-e---hhhhHHHHhhhhcc--ccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC----- Q lcl|Aclame:pro 64 QDIAK-MRLRLMQ--TDAQGIRR-E---TRRGDIARLCRRPN--AQQNRIQFFELWLNAKLRHGNTVVLKIRNAR----- 129 (454) Q Consensus 64 ~~va~-~~~~~~~--~~~~~~~~-~---~~~~~~~~l~~~pn--~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~----- 129 (454) ..+.. ..+.+.. ...++... + .-...+..|.+++. -.++++++...++..++..|++++.+.+... T Consensus 81 ~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~~~~~~~~~~~~ 160 (548) T protein:vir:95 81 ERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQKLMGRVPNYTF 160 (548) T ss_pred HhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEEeeecccccccC Confidence 66654 2233222 22222111 1 11123334444433 2478999999999999999999998875432 Q ss_pred --CceeEEEEecCcceEE-------------EECCCCceeeEEeccccc-------cccceeEEehhheEEeecCCCcCc Q lcl|Aclame:pro 130 --GQIKELRILDWNRVEP-------------LVADDGEVFYRITPDRNC-------GITEAVTVPAREVIHDRFNCFFHP 187 (454) Q Consensus 130 --G~~~~l~~l~~~~~~~-------------~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~vih~~~~~~~~~ 187 (454) ..+..|..|+|+.+.. ..|..|....|+...... .......++.++|||+......++ T Consensus 161 g~~~~~~lqliepd~l~~~~~~~~~~i~~GIE~D~~Grp~aY~i~~~hPgd~~~~~~~~~~~rvpA~~VlHif~~~r~gQ 240 (548) T protein:vir:95 161 ATSVPFALELLEPDYLPFSYNNLSKGIVQGIERDTWRRKRAYHLLKDHPGNLQTLGGSLAVKRVEAERIIHIAYRKRIGQ 240 (548) T ss_pred CcccceEEEEechhhcCCCCCCCCCceeeeeEECCCCceEEEEEeecCCCcccccccccceeeechhHheecccccCCcc Confidence 2466889999988853 333444444333322211 123457799999999998888899 Q ss_pred ccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCce-ecCCCceeee Q lcl|Aclame:pro 188 LIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTA-ILSNGAKYNP 266 (454) Q Consensus 188 ~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~-vl~~g~~~~~ 266 (454) ..|+|.+..+...+.......+......+-.+...++|+.+.+..... +.....-.... .-..|.++ .|..|.+++. T Consensus 241 ~RGvs~lapvl~~l~~l~~y~dael~~aki~A~~a~fi~~~~~~~~~~-~~~~~~~~~~~-~~~pG~iv~~L~pGe~i~~ 318 (548) T protein:vir:95 241 NRGVPMLHAVLIRLADLKDYEESERVAARISAALAMYIKKGNPDSYTV-EPGKDRKNRTI-PIAPGMVFDDLEPGEDVGM 318 (548) T ss_pred ccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCccccC-CCCcccccccc-cccCCccccccCCCceeee Confidence 999999999999998888888888887777777788877654321110 00000000000 01234443 5888999888 Q ss_pred ccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHH-----------HHHHHHHH-HHHHHHHH Q lcl|Aclame:pro 267 TTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYS-----------QCLQTLIE-SIELLLDE 334 (454) Q Consensus 267 l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~-----------~~i~P~~~-~ie~~l~~ 334 (454) .+.+.....|.+..+...+.||+++|||-+.|...-++|||++.+....+++ ..++|+.. +++.++-. T Consensus 319 ~~p~~p~~~~~~f~~~~lr~IAaglGipYe~ltgD~s~nYSS~R~~l~e~~r~~~~~q~~~i~~~~~Pi~~~wle~a~l~ 398 (548) T protein:vir:95 319 IESNRPNPFLEGFRNGQLRMIGAGTRSTYSSVSRAYDGTYSAQRQELVEGWLGYDLLQHEFIDYWCRPVYRSWLQMYLLA 398 (548) T ss_pred cCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc Confidence 8866556689999999999999999999886655445688877666555433 33334332 23333322 Q ss_pred hhcC-cc----cceeeecc--hhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccc------ccccccc-- Q lcl|Aclame:pro 335 ALET-GE----NESTEFDV--TTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDAL------YLQQQNY-- 399 (454) Q Consensus 335 ~l~~-~~----~~~~~f~~--~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~------~~~~~~~-- 399 (454) -.++ +. ...+...+ -.....|+...+++...++.+|+.|.-|+-.+.|.++.+--+.+ +-..++. T Consensus 399 G~i~lP~~~~~~~~~~~~W~~P~~~~iDP~Kea~A~~~~i~~Gl~T~~~~~a~~G~D~~ev~~q~a~E~~~~~~~GL~~~ 478 (548) T protein:vir:95 399 RKERLPADVDHRTLYAAVYQGPVMPWINPMHEANAWELLVKAGFADEAEVARARGRDPRELKKSRETEIKANRAAGLVFS 478 (548) T ss_pred CCcCCCCCCCchhheeeeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCCC Confidence 2221 11 01122222 23445799999999999999999999988888888764321111 0011110 Q ss_pred --ccccc--ccccccccCC---CccCc----------------ccCCCCCCc-----ccCcccccccccccH Q lcl|Aclame:pro 400 --SLEAL--SRRDAREDPF---ASSGK----------------TASVPQAVA-----ASDGNKAITETEHDA 443 (454) Q Consensus 400 --~~~~~--~~~~~~~~~~---~~~~~----------------~~~~~~~~~-----~~d~~~~~~~~~~~~ 443 (454) +.... +..+..+..+ ....+ ...-+.++- +...+.+.++. ++ T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 548 (548) T protein:vir:95 479 SDAYHQLVKSGMDPVEAVQKVYLGVGKMLTADEARELVNRYGAGLPVPGPDFPNESNNGGADGQPSNP--DP 548 (548) T ss_pred CcccccccccccCCCCchhhhccccccccccchhHHhhccCCCCCcCCCCCCCcccccCCCCCCCCCC--CC Confidence 00000 0000000000 00000 000000000 00000011110 11 No 132 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=99.74 E-value=2.7e-17 Score=111.42 Aligned_cols=409 Identities=10% Similarity=0.015 Sum_probs=225.1 Q ss_pred Ccchhhhhcccccccccc----Cccc---chhh-hhhhhhhccc----------cccCCccccHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDV----REAG---WTSL-FQAVAEPFAG----------AWQQGVKADPEAVLSFHAVFACISLI 62 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~----~~~~---~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~i~~i 62 (454) |. +|+ ++++...+. .... +... .....-++.+ .+..+..+ .+..++.+.|.+|++.+ T Consensus 1 m~---kk~-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~~~l-y~~m~~D~hi~s~l~~R 75 (448) T protein:vir:77 1 MA---KRG-RKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDGLLV-YHKMLSDGTVKNALNYI 75 (448) T ss_pred CC---CCC-CCCcccCCcccccchhhhhhhccchhhhcccccccccccchhHhhccccchHH-HHHHhhChHHHHHHHHH Confidence 32 222 222211110 0000 0000 0000001100 11222222 24466789999999999 Q ss_pred HHhhcccceEEEeccccccceehhhhHHHHhhhhcc---ccCCHHHHHHHHHHHHHHhCCeEEEEeeC--CCCc--eeEE Q lcl|Aclame:pro 63 SQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPN---AQQNRIQFFELWLNAKLRHGNTVVLKIRN--ARGQ--IKEL 135 (454) Q Consensus 63 a~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn---~~~~~~~f~~~~~~~~ll~G~~~i~~~r~--~~G~--~~~l 135 (454) ...|.+++|.|....++....... ..+..++..+. ...++.+++..++ +.+.+|-+++++++. .+|. +..+ T Consensus 76 k~av~~~~w~v~p~~~~~~d~~~a-e~v~~~l~~~~~~~~~~~f~~~i~~~l-da~~~G~s~~Eivw~~~~dg~~~~~~l 153 (448) T protein:vir:77 76 FGRIRSAKWYVEPASTDPEDIAIA-AFIHAQLGIDDASVGKYPFGRLFAIYE-NAYIYGMAAGEIVLTLGADGKLILDKI 153 (448) T ss_pred HHHHhcCCceEecCCCCHHHHHHH-HHHHHHhhchhhhhccCCHHHHHHHHH-HhhhhcceeEEEEEeecCCCceeeccc Confidence 999999999997533322221111 12233333332 2346778888874 678899999999874 3554 4466 Q ss_pred EEecCcceE-EEECCCCceeeEEecccc---ccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHH Q lcl|Aclame:pro 136 RILDWNRVE-PLVADDGEVFYRITPDRN---CGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENS 211 (454) Q Consensus 136 ~~l~~~~~~-~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~ 211 (454) .+.++.+++ ...+.++...+....... ........+|..-++|..+. ..+.++|.|.+..+.-..-......+.. T Consensus 154 ~~r~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~-~~g~p~g~gLlr~~~w~~~fK~~~~~~w 232 (448) T protein:vir:77 154 VPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVNGLEIPIWKTVVFLHN-DDGSFTGQSALRAAVPHWLAKRALILLI 232 (448) T ss_pred cccCCCccceeeeecCCceEEEecCCcccccccCCCccccccceEEEEecC-CcCCcccchHHHHHHHHHHHHHhhHHHH Confidence 677775443 223344444433322111 11122345677888888654 4567899999999999999999999999 Q ss_pred HHHHhccCCcceeEecCccCC--HHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 212 TSFFRNGGRPSGVIEIPGSIT--EENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCS 289 (454) Q Consensus 212 ~~~~~ng~~p~~~l~~~~~~s--~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~ 289 (454) ..|.+.-|.|--+.+.+...+ +++.+.+.+.+.+...|.+++ ++++.|++++-++.+....++.+..++..++|+. T Consensus 233 ~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~--~iiP~g~~ie~~ea~~~~~~~~~~i~~~d~~Isk 310 (448) T protein:vir:77 233 NHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHG--IILPDDWKFDTVDLKSAMPDAIPYLTYHDAGIAR 310 (448) T ss_pred HHHHHHcCCceeEEecCCCCCCCHHHHHHHHHHHHHHhcCCceE--EEecCCceEEEEecCCCccCHHHHHHHHHHHHHH Confidence 999999999998888876543 456666776666665555553 6688887766555544445577788888899988 Q ss_pred HhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--------ccceeeecchhhhhcCHHHHHH Q lcl|Aclame:pro 290 VFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETG--------ENESTEFDVTTLLRMDSERRMK 361 (454) Q Consensus 290 ~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~--------~~~~~~f~~~~l~~~d~~~~~~ 361 (454) +.- -..+....+.++++...+.........+.-.++.|+..||+.|+++ ...+-+|-++.....|.+..++ T Consensus 311 ~iL-GqtlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~Li~~l~~lNfg~~~~~P~~~f~~~e~eDl~~~a~ 389 (448) T protein:vir:77 311 ALG-IDFNTVQLNMGVQAVNIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPGATRFPRLTFEMEERNDFSAAAN 389 (448) T ss_pred HHh-ccccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEecCCChhhHHHHHH Confidence 773 2333222223333333334334556667778899999999888643 1122344444445678888888 Q ss_pred HHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccccccccc Q lcl|Aclame:pro 362 TLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEH 441 (454) Q Consensus 362 ~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 441 (454) .+.+++ +-+|+.+|+|.--+.. ... .+..+....+... ++.+.+. ... .. T Consensus 390 ~~~~l~-------~~~~~~~~ip~~~~~~--------------~~~-~~~~~~~~~~~~~----~~~~~~~--~~~--~~ 439 (448) T protein:vir:77 390 LMGMLI-------NAVKDSEDIPTELKAL--------------IDA-LPSKMRRALGVVD----EVREAVR--QPA--DS 439 (448) T ss_pred HhHHHH-------HHHHHHhcCCccCCcC--------------CCC-CchhcccccCCCC----CCCchhh--cch--hh Confidence 888876 4589999987421110 000 0000111111100 0000000 000 00 Q ss_pred cHHHHHHHH Q lcl|Aclame:pro 442 DAVKAMFRG 450 (454) Q Consensus 442 ~~~~a~~~~ 450 (454) .++.+--|+ T Consensus 440 ~~~~~r~~~ 448 (448) T protein:vir:77 440 RYLYTRRRR 448 (448) T ss_pred HHHHhhhcC Confidence 111111111 No 133 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=99.68 E-value=2.5e-16 Score=106.12 Aligned_cols=374 Identities=10% Similarity=0.034 Sum_probs=214.5 Q ss_pred cchhhhhcccc--ccccccCcccchhhhhhhhhhccccccCCcc------ccHHHHHhhHHHHHHHHHHHHhhcccceEE Q lcl|Aclame:pro 2 WNLLRRTRKNQ--KSGRDVREAGWTSLFQAVAEPFAGAWQQGVK------ADPEAVLSFHAVFACISLISQDIAKMRLRL 73 (454) Q Consensus 2 ~n~f~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~i~~ia~~va~~~~~~ 73 (454) .|.=-|....+ .+....... ..++..++..+=....++|.. +..+-..+.+.|.+|++.+...|.+++|.| T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~-~~~~~~g~~~~D~~lr~~gg~~~~~~~l~~~m~e~D~~v~s~l~~Rk~av~~~~w~V 79 (446) T protein:vir:98 1 MNMEVRNAPTPAIRRRTIYAME-HLGLATSYLSEDGGYKRAGKPTYQQLSAWDEAAQTEPIIAQGLDSIALSVLNKVGPY 79 (446) T ss_pred CcccccCCCchhhhhhhhhccc-cchhhcccCCcchHhhhcCCChHHHHHHHHHHHhcchHHHHHHHHHHHHhhcCCcee Confidence 33211111111 001111111 111111111100000012222 222222358999999999999999999999 Q ss_pred EeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC-C--ceeE----EEEecCcceEEE Q lcl|Aclame:pro 74 MQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR-G--QIKE----LRILDWNRVEPL 146 (454) Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~-G--~~~~----l~~l~~~~~~~~ 146 (454) ...++ +... .+..++.... .++....+.+.+.+|.++.++++... | .|.. +....|..+.-. T Consensus 80 ~p~~~-----~~a~-~v~~~l~~~~-----~~~~~~~~ldai~~G~s~~Eivw~~~~g~~~p~~~~d~~~~~~~~~~r~~ 148 (446) T protein:vir:98 80 QHGDK-----RIKK-FIDDQLRNRA-----KTWISHCVKSIMTYGFSLSEQIYAHGARDNMPATVLDDIVNYHPLQVMLI 148 (446) T ss_pred cCccH-----HHHH-HHHHHHhhcC-----chhHHHHHHHHHhhCceeeeEEEeecccccccchhhccccccccccceee Confidence 64211 1111 1233333321 13344447788999999999987532 2 1111 111222222222 Q ss_pred ECCCCceeeEE----------------------eccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHH Q lcl|Aclame:pro 147 VADDGEVFYRI----------------------TPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQG 204 (454) Q Consensus 147 ~~~~g~~~~~~----------------------~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~ 204 (454) .+.++...... ........+..+.+|...++|+++....+.+||.|.+..++-..-.. T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iP~~kfi~~~~~~~~~~p~G~gLlr~~~w~~~fK 228 (446) T protein:vir:98 149 ANDNGRIVDGDTVTASQYKSGYWVPLPPYRIGDPPKKVDVVGSHVRLPSHKRLFINYNTKGNNPWGTSCLTSVLDYSIFK 228 (446) T ss_pred eccCCccccccccchhhcccccccCcccchhhhhhhhcccCcccccccccceEEEEecCCCCCccccchHHHHHHHHHHH Confidence 22222111000 00000112234568888999999998888899999999999999999 Q ss_pred HHHHHHHHHHHhccCCcceeEecCccCCHHHH---------HHHHHHHHHHhcC--cccCCce---ecCCCceeeecccc Q lcl|Aclame:pro 205 HHIQENSTSFFRNGGRPSGVIEIPGSITEENA---------KKLKSNWDSGYTG--ENAGKTA---ILSNGAKYNPTTFS 270 (454) Q Consensus 205 ~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~---------~~~~~~~~~~~~g--~n~g~~~---vl~~g~~~~~l~~~ 270 (454) ....+....|...-+.|--+.+.+.+.++++. +...+.+.+.+.. .+++.++ ++++|++++-++.. T Consensus 229 ~~~~~~w~~f~E~yG~P~~vGkyp~ga~~~~~~~~~~~~~~~~~~~~L~~av~~~~~da~~ii~~~~~P~g~eie~~ea~ 308 (446) T protein:vir:98 229 RAFRDMMLIALDRYGTPLIYVIVPPGNTGVVEEAPDGTEITTTIAEQAEDALRRLSTDSGLVLTQLSKEQPVQVGALTTG 308 (446) T ss_pred HhhHHHHHHHHhHcCCceeEEeecCCCCcccccchhHHHHHHHHHHHHHHHHHhccccceeeeecccCCCCceEEeeccc Confidence 99999999999999999999988766543221 2223345444422 2333332 34888888766543 Q ss_pred ch-hhHHHHHHHHHHHHHHHHhccchhhhccccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc------- Q lcl|Aclame:pro 271 PV-DSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP--PSSDNVEALEQQYYSQCLQTLIESIELLLDEALETGE------- 340 (454) Q Consensus 271 ~~-d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~--~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~~------- 340 (454) .. ...|.+..++..++|+.+.....-.+|...+ ++++-.+. ........+.-.++.|++.||+.|+.+. T Consensus 309 ~~~~~~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~ala~v-h~~V~~d~~~aDa~~i~~tln~~Li~~l~~lNf~~ 387 (446) T protein:vir:98 309 NNFSDSFERAISLCDNNMLMGMGIPNLLVQNRETTFGTGRASEI-QLELFDGKINSIFDTVIHAFTEQVIGNLIRLNFDP 387 (446) T ss_pred cCChhhHHHHHHHHHHHHHHHHhcccccccccccccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc Confidence 22 2358888899999999998777655554433 23332333 3344566677889999999999886431 Q ss_pred -cc-------eeeecchhhhhcCHHHHHHHHHHHHhCCCcCH---HHHHHHhcCCCCCCcc Q lcl|Aclame:pro 341 -NE-------STEFDVTTLLRMDSERRMKTLGDAVKNTLLTP---NEARKRENLPPLAGGD 390 (454) Q Consensus 341 -~~-------~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~---NE~R~~~g~~p~~~~d 390 (454) .. .++|++. ...|.+..++.+.++++.|..++ +.+|+.+|+|+..... T Consensus 388 ~~~~~~~~~~~~~~~~~--e~eDl~~~a~~~~~L~~~G~~~p~~~~~ire~~giP~~~~~~ 446 (446) T protein:vir:98 388 ALYPLASNTGYITRLPG--RATDLAALVEAIKQMHDMGFLVDGDKDHIRSITGLPDAISST 446 (446) T ss_pred cccccccccccceeccC--ChhhHHHHHHHHHHHHhCCccccccHHHHHHHhCcCCCCCCC Confidence 11 1223332 45788889999999999998764 4599999998754432 No 134 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=99.59 E-value=1.5e-14 Score=96.39 Aligned_cols=314 Identities=12% Similarity=0.033 Sum_probs=175.4 Q ss_pred EEEEeeCCC-C--ceeEEEEecCcceE-EEECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhh Q lcl|Aclame:pro 121 VVLKIRNAR-G--QIKELRILDWNRVE-PLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYA 196 (454) Q Consensus 121 ~i~~~r~~~-G--~~~~l~~l~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~ 196 (454) +.++++... | .+..|.+.|+.++. ...+.++........ ...+...+.++....|++++....+.++|.|.+.. T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~~~~l~~~~~~--~~~g~~~~~lp~~kfi~~~~~~~~g~p~G~gLlr~ 78 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQW--GVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeeccCCceeEEEec--CCCCCCcceeccCCEEEEEeCCCCCCccchhhHHH Confidence 677776543 3 36678888887665 334444433222221 11223456788888998888888888999999999 Q ss_pred hHhHHHHHHHHHHHHHHHHhccCCcceeEecCc--cCCHHH-------HHHHHHHHHH----HhcCcccCCceecCCCce Q lcl|Aclame:pro 197 AGLAATQGHHIQENSTSFFRNGGRPSGVIEIPG--SITEEN-------AKKLKSNWDS----GYTGENAGKTAILSNGAK 263 (454) Q Consensus 197 ~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~--~~s~e~-------~~~~~~~~~~----~~~g~n~g~~~vl~~g~~ 263 (454) ++-..-......++...|.+.-+.|--+...+. ..++++ .+..++.+.. ...|.++ .++++.|++ T Consensus 79 ~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~~g~~a--~~iip~g~~ 156 (355) T protein:vir:78 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAA--GGYIPHGAN 156 (355) T ss_pred HHHHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCcce--eEeecCCce Confidence 999999999999999999998744444444432 222111 2222333332 2234333 467888888 Q ss_pred eeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccc-c-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-- Q lcl|Aclame:pro 264 YNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVG-Q-PPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETG-- 339 (454) Q Consensus 264 ~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~-~-~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~-- 339 (454) ++-++......++.+..++..++|+.++-- ..+.... + .++++-.+. ........+.-.+..|++.||+.|+.. T Consensus 157 ie~~ea~g~~~~~~~~i~~~d~~Isk~iLG-qtlTs~~~~~gGS~Alg~v-h~~v~~~~~~aD~~~i~~~ln~~li~~l~ 234 (355) T protein:vir:78 157 FTLTGVQGKLPEMDGPIRYHDEQIARAVLA-HFLTLGGDKSTGSYALGDT-FASFFTGSLNAVMKHIADVTQQHVVEDLV 234 (355) T ss_pred EEEeecCCCcccHHHHHHHHHHHHHHHHhh-hhhccccCCccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 777765555666888889999999888733 3332221 1 123333333 344556677788899999999877643 Q ss_pred ------ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHH-----HHHHHhcCCCCCCcccccccccccccccccccc Q lcl|Aclame:pro 340 ------ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPN-----EARKRENLPPLAGGDALYLQQQNYSLEALSRRD 408 (454) Q Consensus 340 ------~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~N-----E~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~ 408 (454) ...+.+|.++... .+.+..++.+.+++..|+..++ .+|+.+|+|+-++++....+.. .. T Consensus 235 ~lN~~~~~~~P~~~~~~~~-~~~~~~a~~~~~l~~~G~~~~~~~~~~~~~e~~gip~p~~~~~~~~~~~---------~~ 304 (355) T protein:vir:78 235 DQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAA---------AK 304 (355) T ss_pred HhcCCCCCCCCEEEecCcC-hhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCCcccCCcc---------cc Confidence 1223345554433 4556789999999999987654 4799999986544443321100 00 Q ss_pred ccccCCCccCcccCCCCCCcccCcccccccccccHHHHHHHHHhcC Q lcl|Aclame:pro 409 AREDPFASSGKTASVPQAVAASDGNKAITETEHDAVKAMFRGILKK 454 (454) Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a~~~~~~~~ 454 (454) .+.... ....................++. .+-.-+.++.+.- T Consensus 305 ~~~~~~---~~~~~~~~~~~~~~a~~~~a~~~-~~~~~~~~~~~~~ 346 (355) T protein:vir:78 305 AAGRRR---AKRLPGQRQGAALPSRSPRADPP-RRRGPLRRRPRHP 346 (355) T ss_pred cccccc---ccccCCccccccccccCCCCCCh-hhhHHHHHHhhcc Confidence 000000 00000000000000000001111 1111223333333 No 135 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=99.57 E-value=8.4e-15 Score=97.74 Aligned_cols=394 Identities=11% Similarity=0.046 Sum_probs=179.6 Q ss_pred Ccchhhhhccccccccc--cCcccchhhhhhhhhh---ccccccCCcccc----HHHHHhhHHHHHHHHHHHHhhcccce Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRD--VREAGWTSLFQAVAEP---FAGAWQQGVKAD----PEAVLSFHAVFACISLISQDIAKMRL 71 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~v~~~i~~ia~~va~~~~ 71 (454) |-.-+....+....... ....++....-+++.. .+..+--....+ ...|.+++..+.+|+.+++.+-.--. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~rd~l~~~~~glg~~r~~~~~~~g~~~~~~~~~l~~~Yr~~~ia~~iVd~~~d~~~~~~~ 80 (449) T protein:vir:10 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNP 80 (449) T ss_pred CchhhHHHHhhhcchhHHHHHHHHHHHHHhcCCcccchhhhhcCCcccCCHHHHHHHHhcCchhHHHHHhhhhhhhhcCc Confidence 44333221110000000 0000000000000000 000000011122 22455688889999999986622211 Q ss_pred EEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEE-eeCCC---------CceeEEEEecCc Q lcl|Aclame:pro 72 RLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLK-IRNAR---------GQIKELRILDWN 141 (454) Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~-~r~~~---------G~~~~l~~l~~~ 141 (454) .+....+ .. .......+...+.+-+...-+..+.+..-+ -+++|-+++++ ++++. +.+..+.|+... T Consensus 81 ~i~~g~~-~~-~~~~~~~~e~~~~~l~~~~~~~~l~ea~~~-~rl~Gga~i~i~v~d~~~l~~Pl~~~~~i~~i~v~~~~ 157 (449) T protein:vir:10 81 EIIEGDD-AD-DSEDETSWEKKSKQVFTNRLWRSFAEADRR-RLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAG 157 (449) T ss_pred ccccCcc-cc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCcEEEEEEecCCCCCCcccccCcceeeEEeeccc Confidence 2221111 11 111111111111111111111222222222 35678777766 33332 245566666655 Q ss_pred ceEEEEC-C------CCce-eeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHH-HHHH Q lcl|Aclame:pro 142 RVEPLVA-D------DGEV-FYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQ-ENST 212 (454) Q Consensus 142 ~~~~~~~-~------~g~~-~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~-~~~~ 212 (454) .+++... . .|.+ .|.+...-.......+.+.++.++||.-. +..|.|.++.+++.+.....+. -+.. T Consensus 158 ~i~~~~~~~dp~sp~yg~P~~y~v~~~~~g~~~~~~~iH~SRl~~~~~~----~~~g~~~L~~~yn~l~~~~~~~~~~a~ 233 (449) T protein:vir:10 158 SLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGSGE 233 (449) T ss_pred cCChhhhhcCCCCCCCCCceEEEEeeeccCCCccceeeccceeEeecCC----CCCChhHHHHHHHHhhhHHHhhhhHHH Confidence 5554321 1 1322 23333221122233456888889887422 3348888888887654333322 2222 Q ss_pred HHHhccCC-----------cceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHH Q lcl|Aclame:pro 213 SFFRNGGR-----------PSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLK 281 (454) Q Consensus 213 ~~~~ng~~-----------p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~ 281 (454) .++++..+ ............++..+++.+.+.....|.+ .+.+..+.+++.++.++.+. .+... T Consensus 234 ~~l~~~~rq~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~i~~~~d~~~~~~~~sgl--~d~l~ 308 (449) T protein:vir:10 234 SFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND---VLMTTQGATVTPLVTSVADP--TATYN 308 (449) T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHhhCCchHHHHHHHHHHHHHhccch---heeecCCcceEEEecccCCh--hHHHH Confidence 33332211 1111111111223334444444444433332 34556777888888877754 45677 Q ss_pred HHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHH------HHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcC Q lcl|Aclame:pro 282 MTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQ------CLQTLIESIELLLDEALETGENESTEFDVTTLLRMD 355 (454) Q Consensus 282 ~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~------~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d 355 (454) ...++||.+-|||...|=+.+.+..++.+ -..+|+.. -+.|.++.+-..|-+.-+......+.|.|..|...+ T Consensus 309 ~~~q~iaaa~~IP~t~L~Gqsp~glnst~-D~~nyyd~i~~~Q~~l~p~le~l~~~l~~s~~g~~~~d~~i~f~pL~~~t 387 (449) T protein:vir:10 309 VNLQTAAAGVDIPTRILIGNQQAERSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQT 387 (449) T ss_pred HHHHHHHHHhCCCeeeeeccCccccccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCCCCceeEEeCCCCCCC Confidence 88889999999999865554444444333 33444332 245666666555544333222236889999999888 Q ss_pred HHHHHH-------HHHHHHhCC---CcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCC Q lcl|Aclame:pro 356 SERRMK-------TLGDAVKNT---LLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASV 423 (454) Q Consensus 356 ~~~~~~-------~~~~~~~~g---~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (454) .+++++ ++++++++| +++.+|+|+.+|++|..+.. +. ..+..+. +.+... .+ T Consensus 388 ~kEkAei~k~~A~a~~~~~~ag~~~~~~~~EiR~~~~~~~~~~~~----------~~---~e~~de~-~~~~d~--~a 449 (449) T protein:vir:10 388 GTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP----------LG---EEDGDEE-DKATDS--AA 449 (449) T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCcCHHHHHHHhcccCCCCCC----------CC---CCCCccc-cccCCc--CC Confidence 888754 455666666 89999999999998753210 00 0000000 000000 00 No 136 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=99.51 E-value=2.3e-14 Score=95.34 Aligned_cols=439 Identities=13% Similarity=0.105 Sum_probs=205.5 Q ss_pred Ccchhhh--------------------hccccccccccCc-ccchhh-hhhhhhhccccccCCccccHHHHHhhHHHHHH Q lcl|Aclame:pro 1 MWNLLRR--------------------TRKNQKSGRDVRE-AGWTSL-FQAVAEPFAGAWQQGVKADPEAVLSFHAVFAC 58 (454) Q Consensus 1 m~n~f~r--------------------~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 58 (454) -+|-+-- ....+.+...... .+|... ...+ ..+.+..--|.+ ..-...+.|-+++| T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~F~Gy~-~la~laQ~~eyr~~ 128 (698) T protein:vir:10 51 ALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDAL-SFVTSSGFPGFP-TLVLLAQLPEYRAM 128 (698) T ss_pred cccccccccccCCCccccccccceeccccCCccccchhhhhhcccccccccc-hhhhccCcchHH-HHHHHhhccchhhH Confidence 1221110 0000110000000 011000 0000 000010011111 22345578899999 Q ss_pred HHHHHHhhcccceEEEe-cccc----------cccee-hhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEee Q lcl|Aclame:pro 59 ISLISQDIAKMRLRLMQ-TDAQ----------GIRRE-TRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIR 126 (454) Q Consensus 59 i~~ia~~va~~~~~~~~-~~~~----------~~~~~-~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r 126 (454) +..|++.+.+- |.-.. ...+ +.... .+......+...-....-+..|.+.+-+ --+||-+.+++.- T Consensus 129 ~~~ia~e~~R~-w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eai~~-aRlfGGa~~~i~I 206 (698) T protein:vir:10 129 HEVLADECIRT-WGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGRAHPYFKI 206 (698) T ss_pred HHHHHHHhhcc-cceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccceEEEEEe Confidence 99999988766 52211 0000 00000 0111122222222222222233444444 4556666555432 Q ss_pred -C----------------CCCceeEEEEecCcceEEEECCC----CceeeEEeccccccccceeEEehhheEEeecCC-- Q lcl|Aclame:pro 127 -N----------------ARGQIKELRILDWNRVEPLVADD----GEVFYRITPDRNCGITEAVTVPAREVIHDRFNC-- 183 (454) Q Consensus 127 -~----------------~~G~~~~l~~l~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~-- 183 (454) . ..|....|.+++|.++++..... +..+|....+... + ..+..+.++.|.-.+ T Consensus 207 ~gdd~~l~~PL~~~~~~I~kGslKGL~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~--G--~~IH~SRL~~~vg~pvp 282 (698) T protein:vir:10 207 KGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G--SEVHATRLHTIVSRPVG 282 (698) T ss_pred ecCccccccccccccccccCccceeeeeecccccccchhhhccchhhccCCCceEEEe--c--ceecceeEEEecCCCch Confidence 2 13456678999999988754321 1112111111111 1 135555555444222 Q ss_pred ----CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH--HHHHHHhcCcccCCcee Q lcl|Aclame:pro 184 ----FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK--SNWDSGYTGENAGKTAI 257 (454) Q Consensus 184 ----~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~--~~~~~~~~g~n~g~~~v 257 (454) +...+.|+|.++.+...|..+.............-........+-..++......+. -.+-+++. +|. ++.+ T Consensus 283 d~LKp~y~f~G~Sv~q~~~e~V~~~~rT~~~v~~Li~~~~~~~l~~dla~aL~~g~~~~l~~R~eli~~~R-sn~-G~~l 360 (698) T protein:vir:10 283 DMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALTPGANVDLSMRAELINRYR-DNR-NILF 360 (698) T ss_pred hhhcchhccCCccHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHhc-Ccc-ceEE Confidence 223357999999999999998888877777765433222211111122222222233 23334444 233 5777 Q ss_pred cC-CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccc-cCHHHHHHHHHH-------HHHHHHHHHH Q lcl|Aclame:pro 258 LS-NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS-DNVEALEQQYYS-------QCLQTLIESI 328 (454) Q Consensus 258 l~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~-~n~e~~~~~~~~-------~~i~P~~~~i 328 (454) ++ +.-+|.+.+.+...+ -+......++||.+-+||...|-+.+.... +|.|...++||. .-++|.++++ T Consensus 361 lDk~~Eefeq~st~lSGL--ddVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl 438 (698) T protein:vir:10 361 LDKATEEFFQFNTPLSGL--DALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDV 438 (698) T ss_pred EecCCcceEEEecCcCCH--HHHHHHHHHHHHhhhcCchhhhhccCCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHH Confidence 77 578888888776654 455788889999999999985444333333 566666666654 4677888888 Q ss_pred HHHHHHhhcCcccceeeecchhhhhcCHHHHHHH-------HHHHHhCCCcCHHHHHHHhcCCCC-------CCcccccc Q lcl|Aclame:pro 329 ELLLDEALETGENESTEFDVTTLLRMDSERRMKT-------LGDAVKNTLLTPNEARKRENLPPL-------AGGDALYL 394 (454) Q Consensus 329 e~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~-------~~~~~~~g~~T~NE~R~~~g~~p~-------~~~d~~~~ 394 (454) -..|-+..+......+.|.|..|...+.++++++ ...++..|+++++|+|+++.-+|- +..|.... T Consensus 439 ~~ii~rS~~G~idp~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~d~~d~p~~ 518 (698) T protein:vir:10 439 IVMIQLSLFGAVDPSIKWQWNALRELDDLEVAEARYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGA 518 (698) T ss_pred HHHHHHHhcCCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCccccccCCcccCCC Confidence 8888777776655678889999888888776654 456778899999999998854431 11122222 Q ss_pred cc-cccccc--------ccccccccccCCCccCcccCCCCCCcccCcccccccccccHHHHHHHH---HhcC Q lcl|Aclame:pro 395 QQ-QNYSLE--------ALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDAVKAMFRG---ILKK 454 (454) Q Consensus 395 ~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a~~~~---~~~~ 454 (454) |. +.+... ..+....+..+..+- .....+....+...+...++.... .+.++. +|++ T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~giv~~~ 587 (698) T protein:vir:10 519 PADDDIDGVLTYVQRMAEGGDTGAPTAPGGAR-AGATAPPAAANVNANANPREAGAQ--DAAMRAAGIVFRA 587 (698) T ss_pred CCCCcchHHHhhhcCCcCCCCccccccccccc-CCCCCCcccccccCCCCccccCcc--cceeeEEEEEEEc Confidence 11 111111 001100001110000 000111111111111111111111 111111 2222 No 137 >protein:vir:102426 Length: 631 # NCBI annotation: gp11 # Family: family:all:2798 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655288;genbank:gi:109521851;genbank:GeneID:4157741 Probab=99.49 E-value=5.4e-15 Score=98.80 Aligned_cols=440 Identities=12% Similarity=0.052 Sum_probs=230.5 Q ss_pred Ccc-----hhhhhcccccc-ccccCcc--cc---hhhhhhhhhhccccccCCccccH-HHHHhhHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MWN-----LLRRTRKNQKS-GRDVREA--GW---TSLFQAVAEPFAGAWQQGVKADP-EAVLSFHAVFACISLISQDIAK 68 (454) Q Consensus 1 m~n-----~f~r~~~~~~~-~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~i~~ia~~va~ 68 (454) |.- +.||-++.+.. ...+..+ .. +..+.+.. +...++.=.... +.|-..+.++-.+..|++++++ T Consensus 1 ~~a~~~lr~~rrpkg~~~a~~r~L~aAs~~~~dpg~~~~~~~---g~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr 77 (631) T protein:vir:10 1 MAATQSLRLVRRPKGGRPAPSRALTAASQPLPDPSQVFSKST---GISRNSDWQTDAWEAVDLVGELRYYVGWRASSCSR 77 (631) T ss_pred CCcccceeeeecCCCCCccchhhhhhhhccccchhhhhhhhc---CCcccchhhHHHHHHHHhhhhHHHHhhhhhhhhce Confidence 432 23333322211 1111000 00 00011110 000010001111 2233358889999999999999 Q ss_pred cceEEEeccccccce----ehhh---hHHHHhh-hhccccCCHHHHHHHHHHHHHHhCCeEEEEe-eCCCCc-------- Q lcl|Aclame:pro 69 MRLRLMQTDAQGIRR----ETRR---GDIARLC-RRPNAQQNRIQFFELWLNAKLRHGNTVVLKI-RNARGQ-------- 131 (454) Q Consensus 69 ~~~~~~~~~~~~~~~----~~~~---~~~~~l~-~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~-r~~~G~-------- 131 (454) +.+.+-..+.++..+ +..+ ..+.... .-+.-.+...++++.+..++-+-|++||.+. +..+|. T Consensus 78 ~rL~as~idpDtg~ptg~iee~~~~~~~v~~~~~~i~gG~lgQ~~llkrl~~~ltV~GE~wiv~l~~p~~~~~~~pd~~~ 157 (631) T protein:vir:10 78 CRLVASELDENTGLPTGGISEDNTEGERVREIVSKIADGTLGQAALTKRVVECLTVPGELWIVILTRPVKGAPAQPDGSV 157 (631) T ss_pred eeeEeeeeccCCCCCccccccCCchhHHHHHHHHhcCCCcchHHHHHHHHHhheecccceEEEEEeccCcCCCCCccccc Confidence 999988877663221 1111 1122222 2455567889999999999999999999874 333322 Q ss_pred --eeEEEEecCcceEEEECCCCceeeEEeccccccccceeEEe--hhheEEeecCCCcCcccccchhhhhHhHHHHHHHH Q lcl|Aclame:pro 132 --IKELRILDWNRVEPLVADDGEVFYRITPDRNCGITEAVTVP--AREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHI 207 (454) Q Consensus 132 --~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~ 207 (454) ..+++++....++..-..+|.....- .+....|- .+-+|.+=.+.+....+--||+.+++..+.-..-. T Consensus 158 r~~~~W~~vt~~ei~~~~~g~g~~v~lp-------~g~~h~~~~~~D~l~RiW~P~prr~~e~dSpvra~l~~l~Ei~~~ 230 (631) T protein:vir:10 158 RTRQEWYAVSKEEIKKSNKGSGTNIVLP-------TGEEHEFVKGTDIIFRVWIPKPRKASEPDSPVRAVLDSIREIVRT 230 (631) T ss_pred ccccceeeccHHHHhcccCcccceeecC-------CCCccceecCCceEEEeeCCCcccccCCcchhHHHHHHHHHHHHh Confidence 23556666666654433333222111 11222222 22222222345556678899999999999888888 Q ss_pred HHHHHHHHhccCCcceeEecCccCCH---------------------HHHHHHHHHHHH----HhcC--c-ccCCceecC Q lcl|Aclame:pro 208 QENSTSFFRNGGRPSGVIEIPGSITE---------------------ENAKKLKSNWDS----GYTG--E-NAGKTAILS 259 (454) Q Consensus 208 ~~~~~~~~~ng~~p~~~l~~~~~~s~---------------------e~~~~~~~~~~~----~~~g--~-n~g~~~vl~ 259 (454) .+...+..+...+-.|++.++..+|= .....+.+.|-+ .+.. . .+--++++. T Consensus 231 t~~i~aaakSRl~gnGvlflP~els~P~~~~~~~~~~g~~v~~~~g~pa~~~l~~~l~q~a~tai~De~S~aA~vPii~~ 310 (631) T protein:vir:10 231 TKTIANASKSRLIGNGVLFVPHEMSLPAAQGPVSEVEGEEIAPLVGEPAVQQLTDMLFQVAETAVEDEDSQAAFIPVIAG 310 (631) T ss_pred hhHHHHHHHHHHhhCceeEeccccccCCCCCCCCCcCCccCCccccchhHHHHHHHHHHHHhhhhcCCCCccceeeeeEe Confidence 88888888888888888888765431 245555555542 2221 1 122233332 Q ss_pred ------CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchh-hhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 260 ------NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAY-KIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLL 332 (454) Q Consensus 260 ------~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~-~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l 332 (454) ++++...+.....+ --+++++..+..||..+.|||+ +||...++|--++=+....-++--|.|.+..||+.| T Consensus 311 ~p~E~i~~i~hlkf~~ei~e-~aiktR~daI~RlA~glDi~pE~LLGlGsd~NHWsAWqI~dedVrlHI~P~l~lic~Al 389 (631) T protein:vir:10 311 VPGEQIKDVKHIRFDNEITE-VAIKTRNDAIARLAMGLDVSPERLLGLGSQTNHWSAWQISDEDVQLHIAPVMEIFCQAL 389 (631) T ss_pred echHHhcCeeEEeecCchhH-HHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchHHHHHHHHH Confidence 24455555544333 4588899999999999999998 566655665444333333445567999999999999 Q ss_pred HHhhcCc---------ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcc-------cc---- Q lcl|Aclame:pro 333 DEALETG---------ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGD-------AL---- 392 (454) Q Consensus 333 ~~~l~~~---------~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d-------~~---- 392 (454) ++.+|.+ ..|-++||.+.|... + ++.+-+..+.+.|.||-...|+.+|+.-..+-| .. T Consensus 390 T~q~Lrp~Le~eGvDp~kYvvW~DaS~Lt~d-P-dr~deA~qa~drGAIt~eAlrk~lGf~eDd~yd~~t~e~~~~~a~~ 467 (631) T protein:vir:10 390 TDQILRVTLAREGIDPSKYVVWYDPSQLTID-P-DKSDEAKFAYENGAINGEALRKYLGLGDDAGYDFTTREGWVMWAQD 467 (631) T ss_pred HhhHHHHHHHHhCCCHHHhEeeecCcccccC-C-CCcHHHHHHHHcCCcCHHHHHHHhcCchhcccCcCchHHHHHHHHH Confidence 9988753 446789999987432 2 256667788899999999999999997543322 00 Q ss_pred -------ccccccccccccccccccccCCCccC--------cccCCCCCCcccCcccccccccc-----cHHHHHHHHHh Q lcl|Aclame:pro 393 -------YLQQQNYSLEALSRRDAREDPFASSG--------KTASVPQAVAASDGNKAITETEH-----DAVKAMFRGIL 452 (454) Q Consensus 393 -------~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~d~~~~~~~~~~-----~~~~a~~~~~~ 452 (454) ++ ..+.++....-.+....++++.. ...+.++..++.|........++ .+++.+.=+.| T Consensus 468 av~~dpaLi-p~lApl~~~~~~~v~~P~~~a~~~~g~ed~~~~~~~~~g~~epdt~d~~p~~~~a~~~~~iv~llv~RAL 546 (631) T protein:vir:10 468 AVSKDPTLI-PMLAPLIAGVLKQIEFPQQQAIDSGGNEDTSDADDLDDGEQEPDTEDDDDGTQKAGLETGIVDLMVDRAL 546 (631) T ss_pred HhhcccCcc-hhhHHHHHHHhhhccCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCccccccchHHHHHHHHHHHH Confidence 11 11122111100000000000000 00011111111111111111111 12222222222 Q ss_pred cC Q lcl|Aclame:pro 453 KK 454 (454) Q Consensus 453 ~~ 454 (454) .. T Consensus 547 el 548 (631) T protein:vir:10 547 EL 548 (631) T ss_pred Hh Confidence 21 No 138 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=99.49 E-value=4.7e-14 Score=93.64 Aligned_cols=436 Identities=11% Similarity=0.091 Sum_probs=209.5 Q ss_pred Ccchhhh--------------------hccccccccccCc-ccchhh-hhhhhhhccccccCCccccHHHHHhhHHHHHH Q lcl|Aclame:pro 1 MWNLLRR--------------------TRKNQKSGRDVRE-AGWTSL-FQAVAEPFAGAWQQGVKADPEAVLSFHAVFAC 58 (454) Q Consensus 1 m~n~f~r--------------------~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 58 (454) -+|-+-- ....+.+..+... .+|... ...+ ..+.+..--|.+ ..-...+.|-+++| T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~F~Gy~-~la~laQ~~eyr~~ 128 (695) T protein:vir:78 51 ALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDAL-SFVTSSGFPGFP-TLVLLAQLPEYRAM 128 (695) T ss_pred cccccccccccCCCcccccceeceeccccCCccccchhhhhhcccccccccc-hhhhccCcchHH-HHHHHhhccchhhH Confidence 1221110 0000000000000 011000 0000 000010011111 22345578899999 Q ss_pred HHHHHHhhcccceEEEe-cccc----------cccee-hhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEee Q lcl|Aclame:pro 59 ISLISQDIAKMRLRLMQ-TDAQ----------GIRRE-TRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIR 126 (454) Q Consensus 59 i~~ia~~va~~~~~~~~-~~~~----------~~~~~-~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r 126 (454) +..|++.+.+- |.-.. ...+ +.... .+......+...-....-+..|.+. +.+--+||-+.+++.- T Consensus 129 ~~~ia~e~~R~-w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erL~V~~~l~ea-ik~aRlfGGa~~~i~i 206 (695) T protein:vir:78 129 HEVLADECIRT-WGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTT-VIHDQAFGRAHPYFKI 206 (695) T ss_pred HHHHHHHhhcc-cceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHH-HHhhccccceEEEEEe Confidence 99999988766 52211 0000 00000 0111122222222222222233444 4444566666555532 Q ss_pred CC-----------------CCceeEEEEecCcceEEEECCC----CceeeEEeccccccccceeEEehhheEEeecCC-- Q lcl|Aclame:pro 127 NA-----------------RGQIKELRILDWNRVEPLVADD----GEVFYRITPDRNCGITEAVTVPAREVIHDRFNC-- 183 (454) Q Consensus 127 ~~-----------------~G~~~~l~~l~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~-- 183 (454) .+ .|....|.+++|.++++..... +..+|....+... + ..+..+.++.|.-.+ T Consensus 207 ~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~--G--~kIH~SRL~~f~g~plP 282 (695) T protein:vir:78 207 KGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G--TEVHATRLHTIVSRPVG 282 (695) T ss_pred ccCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEEEe--c--eEEeeeeEEEecCCCch Confidence 21 3456678999999998864321 1112111111111 1 235555555444222 Q ss_pred ----CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHH--HHHHHHHhcCcccCCcee Q lcl|Aclame:pro 184 ----FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKL--KSNWDSGYTGENAGKTAI 257 (454) Q Consensus 184 ----~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~--~~~~~~~~~g~n~g~~~v 257 (454) +...+.|+|..+.+...|................-.........-..+.......+ +-.+-+++. +|. ++.+ T Consensus 283 d~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~lk~dla~~L~~g~~~~l~~R~eli~~~R-sn~-G~~l 360 (695) T protein:vir:78 283 DMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYR-DNR-NILF 360 (695) T ss_pred hhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHhhcChhHHHHHHHHHHHHHhc-Ccc-ceEE Confidence 22345799999999999998888887777776553322211111112222222222 233334443 233 5777 Q ss_pred cC-CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhh-cccccccccCHHHHHHHHHH-------HHHHHHHHHH Q lcl|Aclame:pro 258 LS-NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKI-GVGQPPSSDNVEALEQQYYS-------QCLQTLIESI 328 (454) Q Consensus 258 l~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l-g~~~~~~~~n~e~~~~~~~~-------~~i~P~~~~i 328 (454) ++ +.-+|.+.+.+...+ -+......++||.+-+||...| |..-.+-.+|.|....+||. .-++|.++.+ T Consensus 361 lDk~~Eefeq~stslSGL--ddVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl 438 (695) T protein:vir:78 361 LDKATEEFFQFNTPLSGL--DALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDV 438 (695) T ss_pred EecCCcceEEEecccCCH--HHHHHHHHHHHHhhhcCchhhhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH Confidence 87 468888888776654 4557888889999999999854 44433333566666666654 4677888888 Q ss_pred HHHHHHhhcCcccceeeecchhhhhcCHHHHHHH-------HHHHHhCCCcCHHHHHHHhcCCCC-------CCcccccc Q lcl|Aclame:pro 329 ELLLDEALETGENESTEFDVTTLLRMDSERRMKT-------LGDAVKNTLLTPNEARKRENLPPL-------AGGDALYL 394 (454) Q Consensus 329 e~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~-------~~~~~~~g~~T~NE~R~~~g~~p~-------~~~d~~~~ 394 (454) -..|-+..+......+.|.|..|...+.++++++ ...++..|+++++|+|.++.-+|- +..|..-+ T Consensus 439 ~~ii~rS~~G~idpdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~ 518 (695) T protein:vir:78 439 IVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGV 518 (695) T ss_pred HHHHHHHhcCCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCc Confidence 8888777776665678888998888887776654 456778899999999999865531 11222212 Q ss_pred cccc---------ccccccccccccccCCCccCcccCCCCCCc--ccCcccccc-------------------------- Q lcl|Aclame:pro 395 QQQN---------YSLEALSRRDAREDPFASSGKTASVPQAVA--ASDGNKAIT-------------------------- 437 (454) Q Consensus 395 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~-------------------------- 437 (454) +..+ ..+...++ .....+ ...+...+++ +-+.+-+.. T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~g~~~~~~~~~~~~~~~~~~ag~~~~~~~aag~v~~~~g~vLl~k 592 (695) T protein:vir:78 519 PADDDIDGVLTYVQRLAEGGD--TGAPGG----ARAGATAPPTVANVNANVKPREAGAQDAAMRAAGAVYVVDGKVLLMK 592 (695) T ss_pred CccchhhhhHhhhcCcccccc--cCCCCC----CCCCCCCCCceeeeeccccccccCCCCcccceeEEEEEeCCEEEEEE Confidence 2111 11111111 000000 1111111111 111111110 Q ss_pred -------------cccccHHHHHHHHHhcC Q lcl|Aclame:pro 438 -------------ETEHDAVKAMFRGILKK 454 (454) Q Consensus 438 -------------~~~~~~~~a~~~~~~~~ 454 (454) |...+..+|+.|-+.+| T Consensus 593 r~~g~W~lPgG~vE~gEt~~~aa~RE~~EE 622 (695) T protein:vir:78 593 RPAGDWGLPAGKVEGNETPEEAARRETREE 622 (695) T ss_pred ecCCCccCCccccCCCCCHHHHHHHHHHHH Confidence 22233344444444444 No 139 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=99.48 E-value=3.9e-14 Score=94.07 Aligned_cols=440 Identities=12% Similarity=0.089 Sum_probs=210.5 Q ss_pred Ccchh--hhhccccccccccCc-ccchhhh-hhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEe- Q lcl|Aclame:pro 1 MWNLL--RRTRKNQKSGRDVRE-AGWTSLF-QAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQ- 75 (454) Q Consensus 1 m~n~f--~r~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~- 75 (454) +.-.| .-....+....+... .+|.... ..+ ..+.+..--|.+ ..-...+.|-+++|+..|++.+.+- |.-.. T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~F~Gy~-~la~laQ~~eyr~~~~~ia~e~~R~-w~~~~~ 144 (694) T protein:vir:10 68 LARQFEVDVSNYTPRERRAASYALDFNGTSMDAL-SFVTSSGFPGFP-TLVLLAQLPEYRAMHEVLADECIRT-WGEAIG 144 (694) T ss_pred hhhhccccccCCCccccchhhhhhccCcccccch-hhhhccCcchHH-HHHHHhhccchhhHHHHHHHHhhcc-cceecc Confidence 11111 001111111111000 0111000 000 000110111111 2234557899999999999988766 52211 Q ss_pred cccc----------cccee-hhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC---------------- Q lcl|Aclame:pro 76 TDAQ----------GIRRE-TRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA---------------- 128 (454) Q Consensus 76 ~~~~----------~~~~~-~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~---------------- 128 (454) ...+ |.... .+......+...-....-+..|.+. +.+--+||-+.+++.-.+ T Consensus 145 ~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~ea-ik~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~I 223 (694) T protein:vir:10 145 GTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTT-VIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTV 223 (694) T ss_pred ccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHH-HHhhccccceEEEEEeecCccccccccccccccc Confidence 0000 00000 0111122222222222222233444 444456666665553211 Q ss_pred -CCceeEEEEecCcceEEEECCC----CceeeEEeccccccccceeEEehhheEEeecCC------CcCcccccchhhhh Q lcl|Aclame:pro 129 -RGQIKELRILDWNRVEPLVADD----GEVFYRITPDRNCGITEAVTVPAREVIHDRFNC------FFHPLIGLPPVYAA 197 (454) Q Consensus 129 -~G~~~~l~~l~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~------~~~~~~G~s~l~~~ 197 (454) .|....|.+++|.++++..... +..+|....+... + ..+..+.++.|.-.+ +...+.|+|..+.+ T Consensus 224 ~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~--G--~~IH~SRL~~f~g~plPd~LKp~y~~~G~Sv~q~~ 299 (694) T protein:vir:10 224 PKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G--TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLA 299 (694) T ss_pred cCcceeeeEeecccccccchhhhccchhhccCCCceEEEe--c--eEEeeeeEEEecCCCchhhhhcccccCcccHHHHH Confidence 3556678999999998864321 1112111111111 1 235555555444222 22345799999999 Q ss_pred HhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHH--HHHHHHHhcCcccCCceecC-CCceeeeccccchhh Q lcl|Aclame:pro 198 GLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKL--KSNWDSGYTGENAGKTAILS-NGAKYNPTTFSPVDS 274 (454) Q Consensus 198 ~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~--~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~d~ 274 (454) ...|..+.............-.........-..+.......+ +-.+-+++. +|. ++.+++ +.-+|.+.+.+...+ T Consensus 300 ~e~V~~~~rT~~~v~~Li~~~~v~~lk~dla~~L~~g~~~~l~~R~eli~~~R-sn~-G~~llDk~~Eefeq~stslSGL 377 (694) T protein:vir:10 300 MPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYR-DNR-NILFLDKATEEFFQFNTPLSGL 377 (694) T ss_pred HHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHhhcChhHHHHHHHHHHHHHhc-Ccc-ceEEEecCCcceEEEecccCCH Confidence 999998888887777776553322211111112222222222 233334443 233 577777 468888888776654 Q ss_pred HHHHHHHHHHHHHHHHhccchhhh-cccccccccCHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcCcccceeee Q lcl|Aclame:pro 275 QTVEQLKMTAEIVCSVFRVPAYKI-GVGQPPSSDNVEALEQQYYS-------QCLQTLIESIELLLDEALETGENESTEF 346 (454) Q Consensus 275 ~~~e~~~~~~~~Ia~~fgvp~~~l-g~~~~~~~~n~e~~~~~~~~-------~~i~P~~~~ie~~l~~~l~~~~~~~~~f 346 (454) -+......++||.+-+||...| |..-.+-.+|.|....+||. .-++|.++.+-..|-+..+......+.| T Consensus 378 --ddVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idp~i~~ 455 (694) T protein:vir:10 378 --DALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKW 455 (694) T ss_pred --HHHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceE Confidence 4557888889999999999854 44433333566666666654 4677888888888777777666567888 Q ss_pred cchhhhhcCHHHHHHH-------HHHHHhCCCcCHHHHHHHhcCCCC-------CCcccccccccc---------ccccc Q lcl|Aclame:pro 347 DVTTLLRMDSERRMKT-------LGDAVKNTLLTPNEARKRENLPPL-------AGGDALYLQQQN---------YSLEA 403 (454) Q Consensus 347 ~~~~l~~~d~~~~~~~-------~~~~~~~g~~T~NE~R~~~g~~p~-------~~~d~~~~~~~~---------~~~~~ 403 (454) .|..|...+.++++++ ...++..|+++++|+|.++.-+|- +..|..-++..+ ..+.. T Consensus 456 ~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~ 535 (694) T protein:vir:10 456 QWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAE 535 (694) T ss_pred EeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhhhcCccc Confidence 8898888887776654 456778899999999999765431 112221111111 11111 Q ss_pred cccccccccCCCccCcccCCCCCCcccCcccc-------------------------------------cccccccHHHH Q lcl|Aclame:pro 404 LSRRDAREDPFASSGKTASVPQAVAASDGNKA-------------------------------------ITETEHDAVKA 446 (454) Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------------------------------------~~~~~~~~~~a 446 (454) .++. ...++...+...+..-.......++. ..|...+..+| T Consensus 536 ~~~~--~~~~~~~~g~~~~~~v~~~~~~~~~~~ag~~~~~~~~ag~v~~~~g~vLl~kr~~g~W~lPgG~vE~gEt~~~a 613 (694) T protein:vir:10 536 GGDT--GAPGGARAGATAPPTVANVNANVNPREAGAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGLPAGKVEGNETPEEA 613 (694) T ss_pred cccc--CCCCcccccccCCCcccccccccCccccCCCCccceeeEEEEEeCCEEEEEEecCCCccCCccccCCCCCHHHH Confidence 1110 00000000000000000000000000 00222344445 Q ss_pred HHHHHhcC Q lcl|Aclame:pro 447 MFRGILKK 454 (454) Q Consensus 447 ~~~~~~~~ 454 (454) +.|-+.+| T Consensus 614 ~~RE~~EE 621 (694) T protein:vir:10 614 ARRETREE 621 (694) T ss_pred HHHHHHHH Confidence 55555555 No 140 >protein:vir:106491 Length: 646 # NCBI annotation: Pas4 # Family: family:all:2798 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024790;genbank:gi:48697405;genbank:GeneID:2846148 Probab=99.47 E-value=1e-13 Score=91.82 Aligned_cols=441 Identities=12% Similarity=0.064 Sum_probs=232.4 Q ss_pred cchhhhhccccccc-------cccCcccchhhhhhhhhhccc---cccCCccccHHHHH-hhHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSG-------RDVREAGWTSLFQAVAEPFAG---AWQQGVKADPEAVL-SFHAVFACISLISQDIAKMR 70 (454) Q Consensus 2 ~n~f~r~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~v~~~i~~ia~~va~~~ 70 (454) +-++|.+-.+.... ..+..++- -....+..+.. ..++.-....-.++ ..|.++-.+..|+++++++. T Consensus 1 ~~~~rPk~~p~~p~~~~~arrr~LtaAsa--~l~~~~~~~~kt~~~~~~~WQ~eAW~~~d~vpELry~vgW~~~a~SR~r 78 (646) T protein:vir:10 1 MALLKPKSAPPEPFGAEVARRIALAGATA--QVDLGASSSWKTWKFGNKDWQTEGWRLYDIIPEHHFLAGRIGDSVAQAR 78 (646) T ss_pred CcccCCCCCCCCcccccccchhhhhhccc--cccCCCcceeecCCCcchhhhHHHHHHHhhhhhHhhHhhhhhhhhceee Confidence 34455442222100 00000000 00000000000 00000011112233 35888999999999999999 Q ss_pred eEEEeccccccce-ehhhhHHHHhhhhccc-cCCHHHHHHHHHHHHHHhCCeEEEE---eeCCCCceeEEEEecCcceEE Q lcl|Aclame:pro 71 LRLMQTDAQGIRR-ETRRGDIARLCRRPNA-QQNRIQFFELWLNAKLRHGNTVVLK---IRNARGQIKELRILDWNRVEP 145 (454) Q Consensus 71 ~~~~~~~~~~~~~-~~~~~~~~~l~~~pn~-~~~~~~f~~~~~~~~ll~G~~~i~~---~r~~~G~~~~l~~l~~~~~~~ 145 (454) +.+-+.++.|... ....+....+-..+-- .-...++++.+..++-+-|++||+. .....+.-..++++-.+.|.. T Consensus 79 L~aseiddtG~~tg~v~~~~v~~iv~~~~Gg~~gQ~qlLkr~~~~ltV~GE~wiv~~~~~~~~~~~~~~W~vvt~~Ev~~ 158 (646) T protein:vir:10 79 LYVTEVDDTGEETGEVQDERIKRLAAVPLGTGSQRDDNLRLAGLDLAVGGECWIVGEGAATSPEAAEGSWFVVTGSAISR 158 (646) T ss_pred eeeeeecCCCCCcCccchHHHHHHhhhhccchhhHHHHHHHHHhheecccceEEeeccccCCCCCCccceeeecHHHhcc Confidence 9998877666543 2333334444333332 2345778999999999999999964 122222223455555666632 Q ss_pred EECCCCceeeEEeccccccccceeEEehhheEEeec--CCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcce Q lcl|Aclame:pro 146 LVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRF--NCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSG 223 (454) Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~--~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~ 223 (454) ..+ .+.+.......+...+.++..+++ +|. +.+....+--||+.+++..+.-..-..+...+..+...+-.| T Consensus 159 --tg~---~~~i~~p~~~~g~~~v~~~~~d~l-vRiW~P~Prr~~epDSpvra~l~~l~Ei~~lt~~I~aaakSRL~GnG 232 (646) T protein:vir:10 159 --TGD---EIAVRRPQQRGGSKLVLVDGQDIL-IRCWRPHPNDTDQADSFTRSAIVPLREIELLTKREFAELDSRLTGAG 232 (646) T ss_pred --CCC---eeeeecCccCCCCCcceecCCceE-EEEecCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHHHHhcCc Confidence 121 222222222223344445555553 343 445556688999999999999888888888888888888888 Q ss_pred eEecCccCC-------HHHHHHHHHHHHHH----hcC--c-ccCCceecCC-Cc------eeeeccccc-hhhHHHHHHH Q lcl|Aclame:pro 224 VIEIPGSIT-------EENAKKLKSNWDSG----YTG--E-NAGKTAILSN-GA------KYNPTTFSP-VDSQTVEQLK 281 (454) Q Consensus 224 ~l~~~~~~s-------~e~~~~~~~~~~~~----~~g--~-n~g~~~vl~~-g~------~~~~l~~~~-~d~~~~e~~~ 281 (454) ++.++..++ +.....+.+-|.+. +.. + .+--++++.. |. +++.+.... .+.--+++++ T Consensus 233 vLfvP~e~s~p~~~~~~a~~~~l~~~l~qaa~tAi~De~S~aA~vPiia~~P~E~i~~~~~ik~l~f~~eite~aiktR~ 312 (646) T protein:vir:10 233 IMFLPEGVDFPRGEEDPAGLAGFMAYLQRAAAASMADQSRASAMVPIMATIPNEMMEHLDKIKPLTFWSELSAEITPMKD 312 (646) T ss_pred eeeeccccccCCCCCCCcchhHHHHHHHHHHHhhhcCCCCccceeeeEEeeChHHHhhhhcceeeccCchhhHHHhhhHH Confidence 998887653 22344555554433 221 1 1222333322 11 334333322 2334578899 Q ss_pred HHHHHHHHHhccchhh-hcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc----------ccceeeecchh Q lcl|Aclame:pro 282 MTAEIVCSVFRVPAYK-IGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETG----------ENESTEFDVTT 350 (454) Q Consensus 282 ~~~~~Ia~~fgvp~~~-lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~----------~~~~~~f~~~~ 350 (454) ..+..||....|||+. ||.. ++|--++=+....-++ -|.|.+..||+.|++.+|.+ ..|-++||.+. T Consensus 313 daI~RlA~glDIppE~LLGlg-d~NHWtAWqI~de~vr-HI~P~l~~ic~AlT~~~Lrp~Le~eGi~dp~kyvvW~DaS~ 390 (646) T protein:vir:10 313 KAIARLASSAEIPGEVLTGIG-DANHWTAWLISDEGIR-WIRGYLGLIADALTRGFLRRALESMGVTNPERYAFAFDTST 390 (646) T ss_pred HHHHHHHhccCCchhheeecc-ccceeeeeeeccccch-hhhhHHHHHHHHHHhhHHHHHHHHcCCCChhHeEEeecCcc Confidence 9999999999999985 5554 5665443333333444 49999999999999988653 34568899998 Q ss_pred hhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccc-----cc------cccccc-------cccccccccc--c Q lcl|Aclame:pro 351 LLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDA-----LY------LQQQNY-------SLEALSRRDA--R 410 (454) Q Consensus 351 l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~-----~~------~~~~~~-------~~~~~~~~~~--~ 410 (454) |...- ++.+.+..+++.|.||-...|+.+|+.-..+.+. .+ .+..++ .++....... + T Consensus 391 Lt~~p--d~~deA~qa~drGAIt~eAlrk~~Gf~~dd~pt~~E~~~~~~~~~v~~~P~Lil~P~~qa~~~~P~~~~~~lp 468 (646) T protein:vir:10 391 LASKP--NRLDEAIQLHERNLIKDEEVVKAGAFSVDQMPTVQERAVQILLGLVKTQPDLILDPAIQAALGLPAVQSVGLP 468 (646) T ss_pred cccCC--CCcHHHHHHHHcCCccHHHHHHHhcccccccCChHHHHHHHHHHHhcCCccccccchhhccccCCCcCccccC Confidence 74322 2566677889999999999999999874322211 11 111111 1111000000 0 Q ss_pred ccC---------CCccCcccCCCCCCcccCcccccc-----cc------------------cccHHHHHHHHHhcC Q lcl|Aclame:pro 411 EDP---------FASSGKTASVPQAVAASDGNKAIT-----ET------------------EHDAVKAMFRGILKK 454 (454) Q Consensus 411 ~~~---------~~~~~~~~~~~~~~~~~d~~~~~~-----~~------------------~~~~~~a~~~~~~~~ 454 (454) ... .+...+.....++++.+|.+.+.. +. -+-+++.+..+.|.+ T Consensus 469 p~~~~~~dg~~~~~e~~g~~~~~E~~~~pda~~~~a~~~~~~~r~~~~~~~~~~~~~p~a~~~aav~l~v~RAL~l 544 (646) T protein:vir:10 469 PTAAQRTDGDLDDDESEGAPNGGEAPDQPDADEARAITAALDRRIALAARPVLALPSPEAVFNASAKLMILRALEL 544 (646) T ss_pred CcccccccCCCCChhhcCCCCCCccCCCCCCCccccccccccccchhhhhhhhccccchhHHHHHHHHHHHHHHHh Confidence 000 000011111111222222111111 00 112255566666665 No 141 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=99.46 E-value=1.2e-13 Score=91.43 Aligned_cols=440 Identities=12% Similarity=0.096 Sum_probs=208.9 Q ss_pred Ccchhhhhcc----------------------------ccccccccCc-ccchhh-hhhhhhhccccccCCccccHHHHH Q lcl|Aclame:pro 1 MWNLLRRTRK----------------------------NQKSGRDVRE-AGWTSL-FQAVAEPFAGAWQQGVKADPEAVL 50 (454) Q Consensus 1 m~n~f~r~~~----------------------------~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 50 (454) -.++-+|..- .+....+... .+|... ...+ ..+.+..--|.+ ..-... T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~F~Gy~-~la~la 120 (695) T protein:vir:36 43 PADFARRGALNALDAAPVVEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDAL-SFVTSSGFPGFP-TLVLLA 120 (695) T ss_pred chhhhhcccccccccccccCCCcccccceeceecccccCccccchhhhhhcccccccccc-hhhhccCcchHH-HHHHHh Confidence 1122222110 0000000000 000000 0000 000000001111 223455 Q ss_pred hhHHHHHHHHHHHHhhcccceEEEe-cccc----------ccceeh-hhhHHHHhhhhccccCCHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 51 SFHAVFACISLISQDIAKMRLRLMQ-TDAQ----------GIRRET-RRGDIARLCRRPNAQQNRIQFFELWLNAKLRHG 118 (454) Q Consensus 51 ~~~~v~~~i~~ia~~va~~~~~~~~-~~~~----------~~~~~~-~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G 118 (454) +.|-+++|+..|++.+.+- |.-.. ...+ |..... +......+...-. ...-.+-+...+.+--+|| T Consensus 121 Q~~eyr~~~~~ia~e~~R~-w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqik~L~~e~e-rL~V~~~l~eaik~aRlfG 198 (695) T protein:vir:36 121 QLPEYRAMHEVLADECIRT-WGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIE-RLRIRDAVRTTVIHDQAFG 198 (695) T ss_pred hccchhhHHHHHHHHhhcc-cceecccchhhhhhccccccccccccCchHHHHHHHHHHH-HHHHHHHHHHHHHhhcccc Confidence 7888999999999988766 52211 0000 000000 0011112211111 1122223333344445667 Q ss_pred CeEEEEeeCC-----------------CCceeEEEEecCcceEEEECCC----CceeeEEeccccccccceeEEehhheE Q lcl|Aclame:pro 119 NTVVLKIRNA-----------------RGQIKELRILDWNRVEPLVADD----GEVFYRITPDRNCGITEAVTVPAREVI 177 (454) Q Consensus 119 ~~~i~~~r~~-----------------~G~~~~l~~l~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~vi 177 (454) -+.+++.-.+ .|....|.+++|.++++..... +..+|....+... + ..+..+.++ T Consensus 199 Ga~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~--G--~kIH~SRL~ 274 (695) T protein:vir:36 199 RAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G--TEVHATRLH 274 (695) T ss_pred ceEEEEEeccCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEEEe--c--eEEeeeeEE Confidence 6665553222 3456678999999998864321 1112111111111 1 235555555 Q ss_pred EeecCC------CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHH--HHHHHHHhcC Q lcl|Aclame:pro 178 HDRFNC------FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKL--KSNWDSGYTG 249 (454) Q Consensus 178 h~~~~~------~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~--~~~~~~~~~g 249 (454) .|.-.+ +...+.|+|..+.+...|................-.........-..+.......+ +-.+-+++. T Consensus 275 ~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~lk~dla~aL~~g~~~~l~~R~eli~~~R- 353 (695) T protein:vir:36 275 TIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYR- 353 (695) T ss_pred EecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHhhcChhHHHHHHHHHHHHHhc- Confidence 444222 22345799999999999988888877777776543222211111111222222222 233334443 Q ss_pred cccCCceecC-CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhh-cccccccccCHHHHHHHHHH-------HH Q lcl|Aclame:pro 250 ENAGKTAILS-NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKI-GVGQPPSSDNVEALEQQYYS-------QC 320 (454) Q Consensus 250 ~n~g~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l-g~~~~~~~~n~e~~~~~~~~-------~~ 320 (454) +|. ++.+++ +.-+|.+.+.+...+ -+......++||.+-+||...| |..-.+-.+|.|....+||. .- T Consensus 354 sn~-G~~llDk~~Eefeq~stslSGL--ddVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~ 430 (695) T protein:vir:36 354 DNR-NILFLDKATEEFFQFNTPLSGL--DALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNA 430 (695) T ss_pred Ccc-ceEEEecCCcceEEEecccCCH--HHHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHHHHHHH Confidence 233 577787 468888888776654 4557888889999999999854 44433333566666666654 46 Q ss_pred HHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHH-------HHHHHhCCCcCHHHHHHHhcCCCC------- Q lcl|Aclame:pro 321 LQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKT-------LGDAVKNTLLTPNEARKRENLPPL------- 386 (454) Q Consensus 321 i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~-------~~~~~~~g~~T~NE~R~~~g~~p~------- 386 (454) ++|.++.+-..|-+..+......+.|.|..|...+.++++++ ...++..|+++++|+|.++.-+|- T Consensus 431 L~p~L~rl~~ii~rS~~G~idpdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~ 510 (695) T protein:vir:36 431 LQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKL 510 (695) T ss_pred HHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCccccccc Confidence 778888888887777776665678888998888887776654 456778899999999999765431 Q ss_pred CCcccccccccc---------ccccccccccccccCCCccCcccCCCCCCcccCcccc---------------------- Q lcl|Aclame:pro 387 AGGDALYLQQQN---------YSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKA---------------------- 435 (454) Q Consensus 387 ~~~d~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------------------- 435 (454) +..|..-++..+ ..+...++ .....+...+.+.+..-.......++. T Consensus 511 D~~d~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~v~~~~~~~~~~~ag~~~~~~~aag~v~~~~g~v 588 (695) T protein:vir:36 511 DANDDPGVPADDDIDGVLTYVQRLAEGGD--TGAPGGARAGATAPPTVANVNANVNPREAGAQDAAMRAAGAVYVVDGKV 588 (695) T ss_pred ccccCCCcCccchhhhhHhhhcCcccccc--cCCCCcccccccCCCcccccccccCccccCCCCccceeeEEEEEeCCEE Confidence 112222121111 11111111 000000000000000000000000000 Q ss_pred ---------------cccccccHHHHHHHHHhcC Q lcl|Aclame:pro 436 ---------------ITETEHDAVKAMFRGILKK 454 (454) Q Consensus 436 ---------------~~~~~~~~~~a~~~~~~~~ 454 (454) ..|...+..+|+.|-+.+| T Consensus 589 Ll~kr~~g~W~lPgG~vE~gEt~~~aa~RE~~EE 622 (695) T protein:vir:36 589 LLMKRPAGDWGLPAGKVEGNETPEEAARRETREE 622 (695) T ss_pred EEEEecCCCccCCccccCCCCCHHHHHHHHHHHH Confidence 0022334455555555555 No 142 >protein:vir:106027 Length: 629 # NCBI annotation: gp9 # Family: family:all:2798 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654906;genbank:gi:109392362;genbank:GeneID:4157055 Probab=99.41 E-value=3e-13 Score=89.23 Aligned_cols=441 Identities=10% Similarity=0.031 Sum_probs=227.5 Q ss_pred Ccc----hhhhhccccccccccCcccchhhhhhhhh--hccccc-cCCccccHHHHH-hhHHHHHHHHHHHHhhcccceE Q lcl|Aclame:pro 1 MWN----LLRRTRKNQKSGRDVREAGWTSLFQAVAE--PFAGAW-QQGVKADPEAVL-SFHAVFACISLISQDIAKMRLR 72 (454) Q Consensus 1 m~n----~f~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~-~~~~v~~~i~~ia~~va~~~~~ 72 (454) |.- .-||.+..+. ...+....... .++... -..+.. +..=....-.++ ..+.++-.+..|++.++++.+. T Consensus 1 ma~~~lrv~rrpk~~p~-~r~l~aasqp~-~P~~~~~~~~~g~~~~~~WQ~eAW~~~d~VgElryyvgW~~ss~Sr~rL~ 78 (629) T protein:vir:10 1 MAASTLRVSRRPKGSPA-RRSLTAASQPM-EPGRTPSRQVAGTVVRTSWQNEAWECMDLVGELRYYVGWRASSCSRVELI 78 (629) T ss_pred CCccceeEEecCCCccc-eeeeccccCCC-CcchhhchhhhhhhhhhhhhHHHHHHHHhhhhHHHHhhhhhhhheeeeEE Confidence 543 2233333322 11221111110 010000 000000 000000111222 3478888899999999999999 Q ss_pred EEecccccccee----hhhhHHHHh----hhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCc----ee-EEEEec Q lcl|Aclame:pro 73 LMQTDAQGIRRE----TRRGDIARL----CRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQ----IK-ELRILD 139 (454) Q Consensus 73 ~~~~~~~~~~~~----~~~~~~~~l----~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~----~~-~l~~l~ 139 (454) +...+.++..+. .+++..... ..--.-.+...++++.+..++-+-|+.|++++-..++. +. +++.+. T Consensus 79 as~idpDtg~ptg~i~ed~p~~~~v~~~v~~iagG~lGqaqLlkr~~~~ltV~GE~~i~il~~~~~~pd~~~r~~W~vVt 158 (629) T protein:vir:10 79 ASELDPDTGKPTGGIRDDDPDGLRFLEIVKTMAGGPLGQAQLQKRAAECLTVPGEHRICLLDQGDKNPDGSVRHNWYVVT 158 (629) T ss_pred EeeecCCCCCCccccccCchhHHHHHHHHHHhcCccchHHHHHHHHHhheeccCceEEEEeecCCCCCCcccccceeeec Confidence 888775554321 122222222 12223346778899999999999999999987544442 23 333334 Q ss_pred CcceEEEECCCCceeeEEeccccccccceeEEehhheEEee--cCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 140 WNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDR--FNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRN 217 (454) Q Consensus 140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~--~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~n 217 (454) ...++. ...|.. .+. ...+....|..+.=+.+| .+.+.....--||+.+++..+.-..-..+...+..+. T Consensus 159 ~~Ei~~--kg~g~~--~i~----lpdg~~he~~~~~D~l~RvW~P~Prr~~e~DSpvra~l~~lrEi~r~tk~i~~aakS 230 (629) T protein:vir:10 159 NDEVKN--KGAGKT--DIE----LPDGTIHEYSKGRDVMFRVWNPRPRRAKEPDSPVRACLDSLREIIRTTKKIRNASKS 230 (629) T ss_pred HHHhcc--ccCcee--EEE----cCCCceeeeeCCCeeEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHh Confidence 444331 111111 111 112233444333333334 3445556678899999999988888888877777777 Q ss_pred cCCcceeEecCccCC----------------------HHHHHHHHHHHHHH----hcC--cc-cCCceecC------CCc Q lcl|Aclame:pro 218 GGRPSGVIEIPGSIT----------------------EENAKKLKSNWDSG----YTG--EN-AGKTAILS------NGA 262 (454) Q Consensus 218 g~~p~~~l~~~~~~s----------------------~e~~~~~~~~~~~~----~~g--~n-~g~~~vl~------~g~ 262 (454) ..+-.|++.++..++ ....+.+.+-|.+. +.. .. +--++++. +++ T Consensus 231 RL~gnGvlflP~e~slp~~~ap~~~~~Pg~~~p~~~g~aa~d~l~~~l~q~a~aAi~De~S~aA~vPiia~vP~E~l~~i 310 (629) T protein:vir:10 231 RLIGNGVVFLPQELSLPRATAPVADNQPGAPVPIVDGVAAADELSNLLFQTAAAAVDDEDSQAALIPLLATVPGEHLQKI 310 (629) T ss_pred HHhhCceeEeccCcccccccCCCCCCCCcccccccCCCcchHHHHHHHHHHHHhhhcCCCCccceeeeEEeechHHhcCe Confidence 777777876654432 01345555555433 221 11 11223332 133 Q ss_pred eeeeccccchhhHHHHHHHHHHHHHHHHhccchh-hhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-- Q lcl|Aclame:pro 263 KYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAY-KIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETG-- 339 (454) Q Consensus 263 ~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~-~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~~-- 339 (454) +...+.....+ --+++++..+..+|..+.|||+ +||...++|--++=+....-++--|.|.+..||+.|++.+|.+ T Consensus 311 khLkf~~eite-~~iktR~daI~RlAmglDispErLLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~Ait~~~Lrp~L 389 (629) T protein:vir:10 311 FHLKIGNEITE-VEIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVQLHIKPVMEVLCAAIYREVLVATL 389 (629) T ss_pred eeeeecCchhH-HHHhhHHHHHHHHHhccCCChhheeeccCCccceeeEEecccceeeecchHHHHHHHHHHhHHHHHHH Confidence 33334433333 3578899999999999999998 5666556664444344444455679999999999999987653 Q ss_pred -------ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccc-------------ccccccc Q lcl|Aclame:pro 340 -------ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDAL-------------YLQQQNY 399 (454) Q Consensus 340 -------~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~-------------~~~~~~~ 399 (454) ..|-++||.+.|.. |+ ++.+-+..+...|.||-...|+.+|+....+-+.- .-+..++ T Consensus 390 ~~eGiDp~~Yvvw~DaS~Lt~-dP-d~~deA~~a~drGaIt~eAlRr~lG~~~dd~y~~~t~~~~q~~A~~~v~~~P~Li 467 (629) T protein:vir:10 390 RAEGIDPDRYVLWYDASGLTV-DP-DKTDEATAAKEQGAITHEAYRRYLGLADEDGYDLETLEGAQAWARDAIVADPSLI 467 (629) T ss_pred HHhCCCHHHhEeeecCccccc-CC-CCcHHHHHHHHcCCccHHHHHHHhccccccCCCcCCcHHHHHHHHHHhcCCCchh Confidence 34678899998733 22 25666778889999999999999998754332210 0011111 Q ss_pred ----cc-----cccccccccc------cCCCccCcccCCCCCCcccCcccccccccccHHHHHHHHHhcC Q lcl|Aclame:pro 400 ----SL-----EALSRRDARE------DPFASSGKTASVPQAVAASDGNKAITETEHDAVKAMFRGILKK 454 (454) Q Consensus 400 ----~~-----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a~~~~~~~~ 454 (454) ++ ....-+..+. ......++.....+++++++...........+.-++-|-+.-| T Consensus 468 ~~~apll~~~l~~i~~P~p~~a~~~~~~~~~~~E~~~~~~e~~~e~dA~~a~~~~~~aa~~~A~rllv~R 537 (629) T protein:vir:10 468 KVLAPLLTDELAEIDWPEPPAALPPGEDDQADEEQDTTGSEPSTEDDAEAAARISSVADMVLAERLLTVR 537 (629) T ss_pred hhhhhhcCCccccccccCCCCcCCCCCcccCccccCCCCCCcCCCcchhhcccCCchhhHHHHHHHHHHH Confidence 11 0000000000 0011111111222333344444433333332211111112111 No 143 >protein:vir:8654 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817773;genbank:gi:29566205;genbank:GeneID:1259465 Probab=99.36 E-value=9.1e-14 Score=92.08 Aligned_cols=437 Identities=12% Similarity=0.046 Sum_probs=225.1 Q ss_pred Ccc----hhhhhcccccccc--ccCcccchhhhhhhhhh---c---cccccC-CccccHHHHHh-hHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MWN----LLRRTRKNQKSGR--DVREAGWTSLFQAVAEP---F---AGAWQQ-GVKADPEAVLS-FHAVFACISLISQDI 66 (454) Q Consensus 1 m~n----~f~r~~~~~~~~~--~~~~~~~~~~~~~~~~~---~---~~~~~~-~~~~~~~~~~~-~~~v~~~i~~ia~~v 66 (454) |.- +.||-++.+.+.. ....+ ..-+..+ + ++.+.. .-....-.++. .+.++-.+..|++++ T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aa-----s~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~ 75 (629) T protein:vir:86 1 MAPTSLRIVRRPKSEPVSTRQRALVAA-----SQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSA 75 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhh-----hhccccccchhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhh Confidence 543 2233233222111 11000 0000000 0 000110 00111122333 788889999999999 Q ss_pred cccceEEEecccccccee--hhh--h---HHHHhhhhcc-ccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCce------ Q lcl|Aclame:pro 67 AKMRLRLMQTDAQGIRRE--TRR--G---DIARLCRRPN-AQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQI------ 132 (454) Q Consensus 67 a~~~~~~~~~~~~~~~~~--~~~--~---~~~~l~~~pn-~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~------ 132 (454) +++.+.+-+.+.++..+. .++ . ....+...+- -.+...++++.+..++-+-|++||.+.....|.. T Consensus 76 Sr~rL~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~ 155 (629) T protein:vir:86 76 SRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNP 155 (629) T ss_pred ceeeeEeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcc Confidence 999999988776554331 111 1 1222222222 3456788999999999999999998874333322 Q ss_pred -eEEEEecCcceEEEECCCCceeeEEeccccccccceeEEehhheEEee--cCCCcCcccccchhhhhHhHHHHHHHHHH Q lcl|Aclame:pro 133 -KELRILDWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDR--FNCFFHPLIGLPPVYAAGLAATQGHHIQE 209 (454) Q Consensus 133 -~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~--~~~~~~~~~G~s~l~~~~~~i~~~~~~~~ 209 (454) .+++.+-++.++-.. +|.. +. ...+...+|....=+.+| .+.+....+--||+.+++..+.-..-..+ T Consensus 156 ~~eW~~vt~~ei~~~~--~~~~---i~----lP~g~~~e~~~~~d~l~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~ 226 (629) T protein:vir:86 156 VPEWLALTPEEVRASE--KKTI---IE----LPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTK 226 (629) T ss_pred hhhheeechHHhhhcc--Ccee---eE----cCCCCcceeeCCCceEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhh Confidence 233444444444111 1111 11 111223333333322244 34555666889999999999888888888 Q ss_pred HHHHHHhccCCcceeEecCccCC----------------------HHHHHHHHHHHHH----HhcC--c-ccCCceecC- Q lcl|Aclame:pro 210 NSTSFFRNGGRPSGVIEIPGSIT----------------------EENAKKLKSNWDS----GYTG--E-NAGKTAILS- 259 (454) Q Consensus 210 ~~~~~~~ng~~p~~~l~~~~~~s----------------------~e~~~~~~~~~~~----~~~g--~-n~g~~~vl~- 259 (454) ...+..+...+-.|++.++..++ ....+.+.+-|.+ .+.. . .+--++++. T Consensus 227 ~i~aaakSRL~gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~ 306 (629) T protein:vir:86 227 TIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAA 306 (629) T ss_pred HHHHHHHHHHhhCceeeeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEee Confidence 77777777777777776654432 1134455555543 2321 1 122233332 Q ss_pred -----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchh-hhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 260 -----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAY-KIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLD 333 (454) Q Consensus 260 -----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~-~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~ 333 (454) ++++...+.....+ --+++++..+..+|..+.|||+ +||+..++|--++=+....-++--|.|.+..||+.|+ T Consensus 307 P~E~i~~i~hlkf~~ei~e-~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~AlT 385 (629) T protein:vir:86 307 PGELIKNVTHLKFDNQVTE-VAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAIT 385 (629) T ss_pred chHHhcCeeEEeecCchhH-HHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchHHHHHHHHHH Confidence 24455555544333 4588899999999999999998 5666556654443333344455679999999999999 Q ss_pred HhhcCc---------ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcc-------c------ Q lcl|Aclame:pro 334 EALETG---------ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGD-------A------ 391 (454) Q Consensus 334 ~~l~~~---------~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d-------~------ 391 (454) +.+|.+ ..|-++||.+.|...- ++.+.+..+...|.||-...|+.+|+.-..+-| . T Consensus 386 ~~~Lrp~Le~eGiDp~kYvvW~DaS~Lt~dP--d~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~a~d~ 463 (629) T protein:vir:86 386 NQVLRTVLMREGIDPNAYVVWHDASQLTVDP--DKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDR 463 (629) T ss_pred hhHHHHHHHHhCCCHHHhEeeecCcccccCC--CCcHHHHHHHHcCCcCHHHHHHHhcCccccccCCCchHHHHHHHHHh Confidence 988753 4467899999874322 256667788999999999999999987532221 1 Q ss_pred cccccccc--------cccccccccccccCC-----CccCcccCC---CCCCcccCcccccc-----c-ccccHHHHHHH Q lcl|Aclame:pro 392 LYLQQQNY--------SLEALSRRDAREDPF-----ASSGKTASV---PQAVAASDGNKAIT-----E-TEHDAVKAMFR 449 (454) Q Consensus 392 ~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~d~~~~~~-----~-~~~~~~~a~~~ 449 (454) +-....++ .+.....+....... ++.....+. ..++++++...... . .....++-+.- T Consensus 464 V~~~P~Li~~~a~l~~~~a~~~~P~~~~~~pp~~e~~~~dE~sga~~~~ep~te~d~~~~~a~~aa~~~~~~a~V~llv~ 543 (629) T protein:vir:86 464 VGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVEALVF 543 (629) T ss_pred hhhCcchhhhhhhhhhhhcccccCccCCCCCccccCCCcccccCCCcCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHH Confidence 11111111 011111110000000 011111111 11111111111111 1 01112222222 Q ss_pred HHhcC Q lcl|Aclame:pro 450 GILKK 454 (454) Q Consensus 450 ~~~~~ 454 (454) +.|.. T Consensus 544 RALel 548 (629) T protein:vir:86 544 RALEL 548 (629) T ss_pred HHHHh Confidence 22222 No 144 >protein:vir:99088 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655692;genbank:gi:109521770;genbank:GeneID:4157810 Probab=99.35 E-value=1.1e-13 Score=91.64 Aligned_cols=440 Identities=11% Similarity=0.026 Sum_probs=224.2 Q ss_pred Ccc----hhhhhcccccccc--ccCcccchhhhhhhhhhc---cccccC-CccccHHHHHh-hHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 1 MWN----LLRRTRKNQKSGR--DVREAGWTSLFQAVAEPF---AGAWQQ-GVKADPEAVLS-FHAVFACISLISQDIAKM 69 (454) Q Consensus 1 m~n----~f~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~-~~~v~~~i~~ia~~va~~ 69 (454) |.- +.||-++.+.+.. ....+. -....-+..+ ++.+.. .-....-.++. .+.++-.+..|+++++++ T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas--~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~ 78 (629) T protein:vir:99 1 MAPTSLRIVRRPKSEPVSTRQRALVAAS--QPVENPGKAFRKAMGSSTRTDWQDDAWKAYDAVGELRYYVGWRSSSASRV 78 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhh--hcccccchhhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhcee Confidence 543 2233233222111 110000 0000000000 001111 00111122333 788899999999999999 Q ss_pred ceEEEecccccccee--hhh--h---HHHHhhhhcc-ccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCc------e-eE Q lcl|Aclame:pro 70 RLRLMQTDAQGIRRE--TRR--G---DIARLCRRPN-AQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQ------I-KE 134 (454) Q Consensus 70 ~~~~~~~~~~~~~~~--~~~--~---~~~~l~~~pn-~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~------~-~~ 134 (454) .+.+-+.+.++..+. .++ . ....+...+- -.+...++++.+..++-+-|++||.+.....|. + .+ T Consensus 79 rL~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~e 158 (629) T protein:vir:99 79 RLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPE 158 (629) T ss_pred eeEeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhh Confidence 999988776554331 111 1 1222222222 345678899999999999999999887433332 2 23 Q ss_pred EEEecCcceEEEECCCCceeeEEeccccccccceeEEehhheEEee--cCCCcCcccccchhhhhHhHHHHHHHHHHHHH Q lcl|Aclame:pro 135 LRILDWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDR--FNCFFHPLIGLPPVYAAGLAATQGHHIQENST 212 (454) Q Consensus 135 l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~--~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~ 212 (454) ++.+-++.++-.. +|.. ... ..+...+|....=+.+| .+.+....+--||+.+++..+.-..-..+... T Consensus 159 W~~vt~~ei~~~~--~~~~--i~l-----P~g~~~e~~~~~d~l~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~ 229 (629) T protein:vir:99 159 WLALTPEEVRASE--KKTI--IEL-----PTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIA 229 (629) T ss_pred heeechHHhhhcc--Ccee--EEc-----CCCCccceeCCCceEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHH Confidence 3444444444211 1111 111 11122222222212243 34555666889999999999888888888877 Q ss_pred HHHhccCCcceeEecCccCC----------------------HHHHHHHHHHHHH----HhcC--c-ccCCceecC---- Q lcl|Aclame:pro 213 SFFRNGGRPSGVIEIPGSIT----------------------EENAKKLKSNWDS----GYTG--E-NAGKTAILS---- 259 (454) Q Consensus 213 ~~~~ng~~p~~~l~~~~~~s----------------------~e~~~~~~~~~~~----~~~g--~-n~g~~~vl~---- 259 (454) +..+...+-.|++.++..++ ....+.+.+-|.+ .+.. . .+--++++. T Consensus 230 aaakSRL~gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E 309 (629) T protein:vir:99 230 NASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGE 309 (629) T ss_pred HHHHHHHhhCceeEeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechH Confidence 77777777777776654432 1134455555543 2321 1 122233332 Q ss_pred --CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchh-hhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 260 --NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAY-KIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEAL 336 (454) Q Consensus 260 --~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~-~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l 336 (454) ++++...+.....+ --+++++..+..+|..+.|||+ +||+..++|--++=+....-++--|.|.+..||+.|++.+ T Consensus 310 ~i~~i~hlkf~~ei~e-~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~AlT~~~ 388 (629) T protein:vir:99 310 LIKNVTHLKFDNQVTE-VAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQV 388 (629) T ss_pred HhcCeeEEeecCchhH-HHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchhHHHHHHHHHhhH Confidence 24455555544333 4588899999999999999998 5666556654443333344455679999999999999988 Q ss_pred cCc---------ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcc-------c------ccc Q lcl|Aclame:pro 337 ETG---------ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGD-------A------LYL 394 (454) Q Consensus 337 ~~~---------~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d-------~------~~~ 394 (454) |.+ ..|-++||.+.|...- ++.+.+..+...|.||-...|+.+|+.-..+-| . +-. T Consensus 389 Lrp~Le~eGiDp~kYvvW~DaS~Lt~dP--d~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~a~d~V~~ 466 (629) T protein:vir:99 389 LRTVLMREGIDPNAYVVWHDASQLTVDP--DKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQ 466 (629) T ss_pred HHHHHHHhCCCHHHhEeeecCcccccCC--CCcHHHHHHHHcCCccHHHHHHHhcCccccccCCCchHHHHHHHHHhhhh Confidence 753 4467899999874322 256667788999999999999999987532221 1 111 Q ss_pred ccccc--------cccccccccccccCC-----CccCcccCCC---CCCcccCcccccc-----c-ccccHHHHHHHHHh Q lcl|Aclame:pro 395 QQQNY--------SLEALSRRDAREDPF-----ASSGKTASVP---QAVAASDGNKAIT-----E-TEHDAVKAMFRGIL 452 (454) Q Consensus 395 ~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~d~~~~~~-----~-~~~~~~~a~~~~~~ 452 (454) ...++ .+.....+....... ++.....+.+ .++++++...... . .....++-+.-+.| T Consensus 467 ~P~Li~~~a~l~~~~a~~~~P~~~~~~pp~~e~~~~dE~sga~~~~ep~te~d~~~~~a~~aa~~~~~~a~V~llv~RAL 546 (629) T protein:vir:99 467 DPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVEALVFRAL 546 (629) T ss_pred CcchhhhhhhhhhhhcccccCccCCCCCccccCCCcccccCCCcCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHHHHH Confidence 11111 011111110000000 0011111111 1111111111111 1 01112222222222 Q ss_pred cC Q lcl|Aclame:pro 453 KK 454 (454) Q Consensus 453 ~~ 454 (454) .. T Consensus 547 el 548 (629) T protein:vir:99 547 EL 548 (629) T ss_pred Hh Confidence 22 No 145 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=99.24 E-value=6.6e-12 Score=81.87 Aligned_cols=402 Identities=11% Similarity=0.016 Sum_probs=180.2 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhh-ccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEP-FAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) |.+.+.+....-.. ...+..+--.. ..+.. -..-.......+.+...+|+..++.+--.+|.+- + T Consensus 20 l~~~~~~~~~rl~~--------l~~Yy~G~~~i~~~~~~--~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~~----~ 85 (484) T protein:vir:77 20 MLNLFTERTQDLGD--------NTAYYESERRPDAVGVT--VPQQMQKLLAHVGYPRLYIDAIAARQELEGFRLG----G 85 (484) T ss_pred HHHHHHHHHHHHHH--------HHHHHhccccchhcccc--cchhHHhhhhhcCcHHHHHHHHHhhhccCceecC----C Confidence 22222211100000 00111100000 00000 0000011122345666778887776655555431 1 Q ss_pred ccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCce-------eEEEEecCcceEEEECCC-C Q lcl|Aclame:pro 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQI-------KELRILDWNRVEPLVADD-G 151 (454) Q Consensus 80 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~-------~~l~~l~~~~~~~~~~~~-g 151 (454) +.. ....++.++.+ | ........+..+++.+|.+|+.+.++.+|.+ ..+.+++|..+.+.++.. + T Consensus 86 ~~~---~~~~l~~i~~~-N---~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~D~~~~ 158 (484) T protein:vir:77 86 ADK---ADEQLWDWWQA-N---DLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDPEVPIIRVEPPTNLYAQIDPRTR 158 (484) T ss_pred cch---hHHHHHHHHHh-c---CHhHHHHHHHHHHhhcCceEEEEecCCCCcccccccccceEEEeccceeEEEecCCCC Confidence 111 12223333332 2 3345678889999999999999888877643 246788898888877643 1 Q ss_pred ceeeEE--eccc---------------------ccccc-----ceeEEehhheEEeecCCCcCcccccchhhh-hHhHHH Q lcl|Aclame:pro 152 EVFYRI--TPDR---------------------NCGIT-----EAVTVPAREVIHDRFNCFFHPLIGLPPVYA-AGLAAT 202 (454) Q Consensus 152 ~~~~~~--~~~~---------------------~~~~~-----~~~~~~~~~vih~~~~~~~~~~~G~s~l~~-~~~~i~ 202 (454) ...+.+ .... ..+.. .+..+..-.|++|.+....+..+|.|-+.. +...++ T Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~N~~~~~~~~G~s~i~~~v~~L~D 238 (484) T protein:vir:77 159 QVMRAIRAIEDEEGNEVIGATLYLPNNTVIWNREDGQWVQVANVAHNLEMVPVIPIPNRTRLSDLYGTTEITPELRSVTD 238 (484) T ss_pred ceEEEEEEEEeecCCcEEEEEEEecCeEEEEEecCCceEeeccccCCCCCcceEEeccccccCccCCcccchHHHHHHHH Confidence 111110 0000 00000 011122233577776555566678886642 333334 Q ss_pred HHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHH--HHHHHHHHhcCcccCCceecC-CCceeeeccccchhhHHHHH Q lcl|Aclame:pro 203 QGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKK--LKSNWDSGYTGENAGKTAILS-NGAKYNPTTFSPVDSQTVEQ 279 (454) Q Consensus 203 ~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~--~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~d~~~~e~ 279 (454) ..+.+.--........+.|..++.- ....+...+. -...|+.. .+.++.++ ++.++.++....-+ -+++. T Consensus 239 a~~~~~s~~~~~~~~~a~p~~~i~G-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~q~~~~~~e-~~~~~ 311 (484) T protein:vir:77 239 AAARTLMLMQATAELMGVPQRLLFG-VKGEELGVDPETGQTLFDAY-----LARILAFEDHESKAQQFSAAELR-NFVDA 311 (484) T ss_pred HHHHHHHHHHHHHHhhhhhHHHHhC-CCcchhcccccccchhhhhh-----hhhhcccCCCCceeEeecCCChH-HHHHH Confidence 4333333322333333445544432 1111111111 11112211 23466665 46787777654433 37888 Q ss_pred HHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cC-----ccccee Q lcl|Aclame:pro 280 LKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEAL----------ET-----GENEST 344 (454) Q Consensus 280 ~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l----------~~-----~~~~~~ 344 (454) ++....+|+.+-++|++.+|+... |-++.++....+ ..+.-.+...+..|...| .. .....+ T Consensus 312 l~~~i~~~s~~~~~p~~~fg~~~~-n~~Sg~Al~~~~--~~l~~ka~~k~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i 388 (484) T protein:vir:77 312 LDALDRKAAAYTGLPPYYLSFSSE-NPASAEAIRSSE--SRLVKTVERKNKIFGGAWEQAMRVAYKVMNGGDIPPEYYRM 388 (484) T ss_pred HHHHHHHHhcccCCCHHHhccccC-cchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccc Confidence 889999999999999999987543 333333333222 222222222222111111 11 112345 Q ss_pred eecchhhhhcCHHHHHHHHHHHHhCC--CcCHHHHHHHhcCCCCC--Ccccccccc---ccccccccccccccccCCCcc Q lcl|Aclame:pro 345 EFDVTTLLRMDSERRMKTLGDAVKNT--LLTPNEARKRENLPPLA--GGDALYLQQ---QNYSLEALSRRDAREDPFASS 417 (454) Q Consensus 345 ~f~~~~l~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~~g~~p~~--~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 417 (454) ++.+......+..+.++.+.+++++| +++..-+++++|+.+.+ +.....-.. ....++..... .+..++.+. T Consensus 389 ~v~w~~~~~~s~~~~ad~~~kl~~~g~gi~s~et~~~~l~~~~~~~~e~~~~~~ee~~~~~~~~~~~~~~-~~~~~~~~~ 467 (484) T protein:vir:77 389 ESIWRDPSTPTYAAKADAATKLYNNGQGVIPKERARIDMGYSITEREEMRKWDEEEQAQGLGLMGTMFGT-DPSGGGNPD 467 (484) T ss_pred eEEecCCCCCCHHHHHHHHHHHHhccCCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccc-cccCCCCCC Confidence 66677777888999999999999876 88888889999886532 111110000 00001111000 011011110 Q ss_pred CcccCCCCCCcccCcccccccccccH Q lcl|Aclame:pro 418 GKTASVPQAVAASDGNKAITETEHDA 443 (454) Q Consensus 418 ~~~~~~~~~~~~~d~~~~~~~~~~~~ 443 (454) ..... ......++++.+ T Consensus 468 ~~~~~---------~~~~~~~~~~~~ 484 (484) T protein:vir:77 468 NPETP---------EPQPNPAEEAAA 484 (484) T ss_pred CCCcc---------cccCCCccccCC Confidence 00000 011111122222 No 146 >protein:vir:97900 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655104;genbank:gi:109391854;genbank:GeneID:4157263 Probab=99.21 E-value=8.9e-12 Score=81.17 Aligned_cols=443 Identities=10% Similarity=0.006 Sum_probs=218.3 Q ss_pred Ccc----hhhhhcccccccc--ccCccc--c-hhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccce Q lcl|Aclame:pro 1 MWN----LLRRTRKNQKSGR--DVREAG--W-TSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRL 71 (454) Q Consensus 1 m~n----~f~r~~~~~~~~~--~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~ 71 (454) |.- +.||-++.++... .+.-+. . .+...+....+.+.......--.+.|-..+.++-.+..|++.++++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (639) T protein:vir:97 1 MAATSLRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQSEAWDFSESIGELSYYVSWRANSCSRTTL 80 (639) T ss_pred CCccceeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhhhhhhhhhhhhhhHHHHhhhhhhhhceeee Confidence 543 2222222221100 000000 0 000000000000000000111112233458888999999999999999 Q ss_pred EEEecccccccee-----hhhhH----HHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEe-eCCCCc------eeEE Q lcl|Aclame:pro 72 RLMQTDAQGIRRE-----TRRGD----IARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKI-RNARGQ------IKEL 135 (454) Q Consensus 72 ~~~~~~~~~~~~~-----~~~~~----~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~-r~~~G~------~~~l 135 (454) .+...+.++..+- .+++. ......--.-.+...++++.+..++-+-|++||.++ +..++. +.+- T Consensus 81 ~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~~ 160 (639) T protein:vir:97 81 IPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRAR 160 (639) T ss_pred EeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCcccccccc Confidence 9888776554321 11111 111112223346778899999999999999998764 455442 2333 Q ss_pred E-EecCcceEEEECCCCceeeEEeccccccccceeEEehhh--eEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHH Q lcl|Aclame:pro 136 R-ILDWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPARE--VIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENST 212 (454) Q Consensus 136 ~-~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~ 212 (454) | .+-...+.. ..+...- +.-. .|...+|..+. ++.+=.+.+....+--||+.+++..+.-..-..+... T Consensus 161 W~vvs~~Ei~~---~~~~~~~-i~lP----dG~~he~~~~~d~l~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~ 232 (639) T protein:vir:97 161 WYAVTREEIKS---KAGETAE-ISLP----DGKTHEFNRDLDSLVRIWNPRPRKASQATSPVRACLETLREIERTTRKIK 232 (639) T ss_pred eeeeeHHHhcc---cCCCeeE-eecC----CCCCccccCCCceEEEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHH Confidence 3 333344331 1111110 1110 11222232222 2222234555666889999999999988888888888 Q ss_pred HHHhccCCcceeEecCccCCH-------------------------HHHHHHHHHHHHH----hcC--c-ccCCceecC- Q lcl|Aclame:pro 213 SFFRNGGRPSGVIEIPGSITE-------------------------ENAKKLKSNWDSG----YTG--E-NAGKTAILS- 259 (454) Q Consensus 213 ~~~~ng~~p~~~l~~~~~~s~-------------------------e~~~~~~~~~~~~----~~g--~-n~g~~~vl~- 259 (454) +..+...+-.|++.++..++- ...+.+.+-|.+. +.. . .+--++++. T Consensus 233 aaakSRl~gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~ 312 (639) T protein:vir:97 233 NAAKSRVMNNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASV 312 (639) T ss_pred HHHHHHHhhCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEee Confidence 877777777888877655431 1244555555443 221 1 122233332 Q ss_pred -----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 260 -----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDE 334 (454) Q Consensus 260 -----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~ 334 (454) ++++...+..... .--+++++..+..+|..+.|||+.|=+..++|--++=+....-++.-|.|.+..||+.|++ T Consensus 313 p~E~l~~ikhl~f~~ei~-e~aiktR~daI~RlA~glDi~pE~LLGl~d~NHWsAWqI~dedvrlHI~P~l~~icdAlT~ 391 (639) T protein:vir:97 313 AAEHLEKVQHIKFGNEVT-EVEIKTRIDAITRLAMGLDVSPERLLGMSKGNHWSAWAIGDEDVQLHIKPVMDLICQAIYN 391 (639) T ss_pred chHHhcCeeeeeecCchh-HHHHhhHHHHHHHHHhccCCchhheeecccccceEEEEecccceeeecchhHHHHHHHHHh Confidence 1333333443333 3458889999999999999999854333555544433333444566799999999999999 Q ss_pred hhcCc---------ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccc-------------c Q lcl|Aclame:pro 335 ALETG---------ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDA-------------L 392 (454) Q Consensus 335 ~l~~~---------~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~-------------~ 392 (454) .+|.+ ..|-++||.+.|...- ++.+.+..+++.|.||-.-.|+.+|+....+-|. + T Consensus 392 ~~Lrp~Le~eGvDp~kYvvW~DaS~Lt~dP--d~~deA~qa~drGAIt~eAlR~~lG~~edd~yd~~t~e~~~~~A~~~V 469 (639) T protein:vir:97 392 DILTPLLAREGIDPTKYILWYDASGLTSDP--DLSDEAVEAHDRGAITSAALRRLLNVGEDSGYDLTTLDGCREFAADVV 469 (639) T ss_pred hHHHHHHHHhCCCHHHhEeeecCcccccCC--CCcHHHHHHHHcCCccHHHHHHHhccccccCCCCCCcHHHHHHHHHHh Confidence 88753 4467899999874322 2566677889999999988999999875432220 0 Q ss_pred ccccc----cccccccccccccccCCCccCcccCCCCCCcccCcccc--cccccc--------------c---HHHHHHH Q lcl|Aclame:pro 393 YLQQQ----NYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKA--ITETEH--------------D---AVKAMFR 449 (454) Q Consensus 393 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~--------------~---~~~a~~~ 449 (454) -.+.. +.++.........-.+++........+..++++++.+. ..+++. . +++.+.= T Consensus 470 ~~~P~li~~~apl~~P~lq~~e~ptp~~a~~~a~~~~~~de~~ga~~~~ePdte~~~~~~~a~~~~~~a~~v~a~~llv~ 549 (639) T protein:vir:97 470 TKNPELIAMYAPLLSSQLAGIEFPQPANAIESTREDEEDDEDSGARQQREPQTEDERSTEEAASLNDRAAYLVAERLLVN 549 (639) T ss_pred cCCcchhhhhhhccCccceecccCCCCCCCCCCCCCCCcccccCCCCCcCCCcccccCCccccCcCchhHHHHHHHHHHH Confidence 00111 11111110000000000000000000011111110000 111110 0 0122222 Q ss_pred HHhcC Q lcl|Aclame:pro 450 GILKK 454 (454) Q Consensus 450 ~~~~~ 454 (454) +.|.. T Consensus 550 RALel 554 (639) T protein:vir:97 550 RALDL 554 (639) T ss_pred HHHHh Confidence 22222 No 147 >protein:vir:107517 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943786;genbank:gi:38638411;genbank:GeneID:2657197 Probab=99.21 E-value=8.9e-12 Score=81.17 Aligned_cols=443 Identities=10% Similarity=0.006 Sum_probs=218.3 Q ss_pred Ccc----hhhhhcccccccc--ccCccc--c-hhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccce Q lcl|Aclame:pro 1 MWN----LLRRTRKNQKSGR--DVREAG--W-TSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRL 71 (454) Q Consensus 1 m~n----~f~r~~~~~~~~~--~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~ 71 (454) |.- +.||-++.++... .+.-+. . .+...+....+.+.......--.+.|-..+.++-.+..|++.++++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (639) T protein:vir:10 1 MAATSLRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQSEAWDFSESIGELSYYVSWRANSCSRTTL 80 (639) T ss_pred CCccceeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhhhhhhhhhhhhhhHHHHhhhhhhhhceeee Confidence 543 2222222221100 000000 0 000000000000000000111112233458888999999999999999 Q ss_pred EEEecccccccee-----hhhhH----HHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEe-eCCCCc------eeEE Q lcl|Aclame:pro 72 RLMQTDAQGIRRE-----TRRGD----IARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKI-RNARGQ------IKEL 135 (454) Q Consensus 72 ~~~~~~~~~~~~~-----~~~~~----~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~-r~~~G~------~~~l 135 (454) .+...+.++..+- .+++. ......--.-.+...++++.+..++-+-|++||.++ +..++. +.+- T Consensus 81 ~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~~ 160 (639) T protein:vir:10 81 IPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRAR 160 (639) T ss_pred EeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCcccccccc Confidence 9888776554321 11111 111112223346778899999999999999998764 455442 2333 Q ss_pred E-EecCcceEEEECCCCceeeEEeccccccccceeEEehhh--eEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHH Q lcl|Aclame:pro 136 R-ILDWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPARE--VIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENST 212 (454) Q Consensus 136 ~-~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~ 212 (454) | .+-...+.. ..+...- +.-. .|...+|..+. ++.+=.+.+....+--||+.+++..+.-..-..+... T Consensus 161 W~vvs~~Ei~~---~~~~~~~-i~lP----dG~~he~~~~~d~l~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~ 232 (639) T protein:vir:10 161 WYAVTREEIKS---KAGETAE-ISLP----DGKTHEFNRDLDSLVRIWNPRPRKASQATSPVRACLETLREIERTTRKIK 232 (639) T ss_pred eeeeeHHHhcc---cCCCeeE-eecC----CCCCccccCCCceEEEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHH Confidence 3 333344331 1111110 1110 11222232222 2222234555666889999999999988888888888 Q ss_pred HHHhccCCcceeEecCccCCH-------------------------HHHHHHHHHHHHH----hcC--c-ccCCceecC- Q lcl|Aclame:pro 213 SFFRNGGRPSGVIEIPGSITE-------------------------ENAKKLKSNWDSG----YTG--E-NAGKTAILS- 259 (454) Q Consensus 213 ~~~~ng~~p~~~l~~~~~~s~-------------------------e~~~~~~~~~~~~----~~g--~-n~g~~~vl~- 259 (454) +..+...+-.|++.++..++- ...+.+.+-|.+. +.. . .+--++++. T Consensus 233 aaakSRl~gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~ 312 (639) T protein:vir:10 233 NAAKSRVMNNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASV 312 (639) T ss_pred HHHHHHHhhCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEee Confidence 877777777888877655431 1244555555443 221 1 122233332 Q ss_pred -----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 260 -----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDE 334 (454) Q Consensus 260 -----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~ 334 (454) ++++...+..... .--+++++..+..+|..+.|||+.|=+..++|--++=+....-++.-|.|.+..||+.|++ T Consensus 313 p~E~l~~ikhl~f~~ei~-e~aiktR~daI~RlA~glDi~pE~LLGl~d~NHWsAWqI~dedvrlHI~P~l~~icdAlT~ 391 (639) T protein:vir:10 313 AAEHLEKVQHIKFGNEVT-EVEIKTRIDAITRLAMGLDVSPERLLGMSKGNHWSAWAIGDEDVQLHIKPVMDLICQAIYN 391 (639) T ss_pred chHHhcCeeeeeecCchh-HHHHhhHHHHHHHHHhccCCchhheeecccccceEEEEecccceeeecchhHHHHHHHHHh Confidence 1333333443333 3458889999999999999999854333555544433333444566799999999999999 Q ss_pred hhcCc---------ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccc-------------c Q lcl|Aclame:pro 335 ALETG---------ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDA-------------L 392 (454) Q Consensus 335 ~l~~~---------~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~-------------~ 392 (454) .+|.+ ..|-++||.+.|...- ++.+.+..+++.|.||-.-.|+.+|+....+-|. + T Consensus 392 ~~Lrp~Le~eGvDp~kYvvW~DaS~Lt~dP--d~~deA~qa~drGAIt~eAlR~~lG~~edd~yd~~t~e~~~~~A~~~V 469 (639) T protein:vir:10 392 DILTPLLAREGIDPTKYILWYDASGLTSDP--DLSDEAVEAHDRGAITSAALRRLLNVGEDSGYDLTTLDGCREFAADVV 469 (639) T ss_pred hHHHHHHHHhCCCHHHhEeeecCcccccCC--CCcHHHHHHHHcCCccHHHHHHHhccccccCCCCCCcHHHHHHHHHHh Confidence 88753 4467899999874322 2566677889999999988999999875432220 0 Q ss_pred ccccc----cccccccccccccccCCCccCcccCCCCCCcccCcccc--cccccc--------------c---HHHHHHH Q lcl|Aclame:pro 393 YLQQQ----NYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKA--ITETEH--------------D---AVKAMFR 449 (454) Q Consensus 393 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~--------------~---~~~a~~~ 449 (454) -.+.. +.++.........-.+++........+..++++++.+. ..+++. . +++.+.= T Consensus 470 ~~~P~li~~~apl~~P~lq~~e~ptp~~a~~~a~~~~~~de~~ga~~~~ePdte~~~~~~~a~~~~~~a~~v~a~~llv~ 549 (639) T protein:vir:10 470 TKNPELIAMYAPLLSSQLAGIEFPQPANAIESTREDEEDDEDSGARQQREPQTEDERSTEEAASLNDRAAYLVAERLLVN 549 (639) T ss_pred cCCcchhhhhhhccCccceecccCCCCCCCCCCCCCCCcccccCCCCCcCCCcccccCCccccCcCchhHHHHHHHHHHH Confidence 00111 11111110000000000000000000011111110000 111110 0 0122222 Q ss_pred HHhcC Q lcl|Aclame:pro 450 GILKK 454 (454) Q Consensus 450 ~~~~~ 454 (454) +.|.. T Consensus 550 RALel 554 (639) T protein:vir:10 550 RALDL 554 (639) T ss_pred HHHHh Confidence 22222 No 148 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=99.21 E-value=8.7e-12 Score=81.21 Aligned_cols=405 Identities=12% Similarity=0.017 Sum_probs=176.3 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhh-hccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAE-PFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) +.+.|.+....+... ..-...++.+--. ...+... ............+...+|+..+..+.-.+|.+ .++ T Consensus 17 ~~~~l~~~~~~~~~r----~~~~~~Yy~G~~~i~~~~~~~--~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~---~~~ 87 (485) T protein:vir:10 17 ARDEMVSAFEDSTQN----LKTNTSYYEAERRPEAIGVTV--PIQMQSLLAHVGYPRLYVDSIAERQAVEGFRF---GDA 87 (485) T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHhcCCcchhcCCCC--ChhhhhhhhhcCcHHHHHHHHHhhhcccceec---CCC Confidence 222221111110000 0000011111000 0000000 00001111223456777887777664444432 111 Q ss_pred ccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCc-------eeEEEEecCcceEEEECCCC- Q lcl|Aclame:pro 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQ-------IKELRILDWNRVEPLVADDG- 151 (454) Q Consensus 80 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~-------~~~l~~l~~~~~~~~~~~~g- 151 (454) .. ....+..++.+ -....+...+..+++.+|.||+.+.++..+. ...+.+++|..+.+.++... T Consensus 88 ~~----~~~~~~~i~~~----N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~~~D~~~~ 159 (485) T protein:vir:10 88 DE----ADEELWQWWQA----NNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNTPIIRVEPPTRMYAEIDPRIG 159 (485) T ss_pred ch----hHHHHHHHHHh----cCHhHHHHHHHHHHhhcCceEEEEeeCCcccccccCCCeeEEEEEccceeEEEEcCCCC Confidence 11 11223333322 2345677888999999999999887765432 22577888988888776422 Q ss_pred ceeeEE--ecccc---------------------ccc-----cceeEEehhheEEeecCCCcCcccccchhhh-hHhHHH Q lcl|Aclame:pro 152 EVFYRI--TPDRN---------------------CGI-----TEAVTVPAREVIHDRFNCFFHPLIGLPPVYA-AGLAAT 202 (454) Q Consensus 152 ~~~~~~--~~~~~---------------------~~~-----~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~-~~~~i~ 202 (454) ...+.+ ..... ... ..+..+..-.|++|.+.....+.+|.|-+.. +...++ T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liD 239 (485) T protein:vir:10 160 RVSKAIRVAYDAEGNEIQAATLYTPNDIFGWYRVENEWQEWFNNPHGLGVVPVVPIPNRTRLSDLYGTSEITPELRSMTD 239 (485) T ss_pred ceeEEEEEEEeeCCCeEEEEEEEeCCeEEEEEEcCCceEEeccccCCCCcccEEEeccccccCCCCCccchhHHHHHHHH Confidence 111111 10000 000 0011122334567776656666788886542 333333 Q ss_pred HHHHHHHHHHHHHhccCCcceeEecCccCCHHHHH--HHHHHHHHHhcCcccCCceecC-CCceeeeccccchhhHHHHH Q lcl|Aclame:pro 203 QGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAK--KLKSNWDSGYTGENAGKTAILS-NGAKYNPTTFSPVDSQTVEQ 279 (454) Q Consensus 203 ~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~--~~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~d~~~~e~ 279 (454) ..+...--......-.+.|..++... ...+...+ .-...|+. ..+.++.++ ++.++.++....-+ .+++. T Consensus 240 a~~~~~s~~~~~~~~~a~p~~~i~G~-~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~d~k~~q~~~~~~~-~~~~~ 312 (485) T protein:vir:10 240 AAARILMLMQATAELMGVPQRLIFGI-KPEEIGVDPETGQTLFDA-----YLARILAFEDAEGKIQQFSAAELA-NFTNA 312 (485) T ss_pred HHHHHHHHHHHHHHhhcchHHHHhcC-Ccccccccccccchhhhh-----cccceeccCCCCceEEeecccchH-HHHHH Confidence 33333322222333334454444321 11110000 00111111 134566665 56777776544333 37888 Q ss_pred HHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHH----HHHHh------hc-----Cccccee Q lcl|Aclame:pro 280 LKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIEL----LLDEA------LE-----TGENEST 344 (454) Q Consensus 280 ~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~----~l~~~------l~-----~~~~~~~ 344 (454) ++....+|+.+=++|+..+|+... |.++.++....+ ..+.-.++..+. .|.+. +. ......+ T Consensus 313 l~~~i~~~~~~~~~p~~~fg~~~~-n~~Sg~Al~~~~--~~l~~k~~~k~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i 389 (485) T protein:vir:10 313 LDQIAKQVAAYTGLPPQYLSTAAD-NPASAEAIRAAE--SRLIKKVERKNSIFGGAWEEAMRLAYRMMKGGDVPPDMLRM 389 (485) T ss_pred HHHHHHHHhcccCCCHHHhccccC-chhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccceee Confidence 889999999999999999986543 223333322222 112112222222 22111 11 1122356 Q ss_pred eecchhhhhcCHHHHHHHHHHHHhCC--CcCHHHHHHHhcCCCCCC--cccccc---ccccccccccccccccccCCCcc Q lcl|Aclame:pro 345 EFDVTTLLRMDSERRMKTLGDAVKNT--LLTPNEARKRENLPPLAG--GDALYL---QQQNYSLEALSRRDAREDPFASS 417 (454) Q Consensus 345 ~f~~~~l~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~~g~~p~~~--~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 417 (454) ++.+.+.+..+..+.++++.+++++| +++..-+++++|+.+.+- .....- ......++......... ++. T Consensus 390 ~v~w~~~~~~~~~~~ada~~kl~~ag~~~~s~et~~~~lg~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~---~~~ 466 (485) T protein:vir:10 390 ETVWRDPSTPTYAAKADAASKLYNGGTGVIPRERARKDMGYSIAEREEMRRWDEEEAAMGLGLIGTMVDPNPTV---PGS 466 (485) T ss_pred eEEecCCCCCCHHHHHHHHHHHHhccccCCCHHHHHHhCCCCHhHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---CCC Confidence 67777778889999999999999876 788888899999875321 111000 00000011111110100 001 Q ss_pred CcccCCCCCCc-ccCcccc Q lcl|Aclame:pro 418 GKTASVPQAVA-ASDGNKA 435 (454) Q Consensus 418 ~~~~~~~~~~~-~~d~~~~ 435 (454) .....++.++. ++.++-+ T Consensus 467 ~~~~~~~~~~~~~~~~~~~ 485 (485) T protein:vir:10 467 PSPAPAPKPAALESGGDAA 485 (485) T ss_pred CCccccccCcCCCCCCCCC Confidence 11111111111 1111111 No 149 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=99.20 E-value=1.3e-10 Score=74.73 Aligned_cols=371 Identities=8% Similarity=-0.049 Sum_probs=181.1 Q ss_pred ccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHH Q lcl|Aclame:pro 34 FAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNA 113 (454) Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~ 113 (454) +...................+...||+.+++.+--..|.+ .++. ....+..++.+ | +.......+..+ T Consensus 1 ~l~~~~~~~~~~~~~~~v~n~~~~ivd~~~~~l~~~gf~~----~d~~----~~~~~~~i~~~-N---~~d~~~~~~~~~ 68 (434) T protein:vir:98 1 MLPKNAEQAFLDFQRKARTNFCGLIANASVHRLLALGVTG----PDGE----PDTRASRWWQA-N---RLDSRQKLVWRM 68 (434) T ss_pred CCCCCccHHHHHhhhhhhccchHHHHHHHHhhhccCceec----CCCc----hHHHHHHHHHh-c---ChhHHHHHHHHH Confidence 0000000000000001123456778888877664444432 1221 11223334332 3 334567778889 Q ss_pred HHHhCCeEEEEeeCCCCc-----e-eEEEEecCcceEEEECCCC-ceeeE---Eeccccccc------------------ Q lcl|Aclame:pro 114 KLRHGNTVVLKIRNARGQ-----I-KELRILDWNRVEPLVADDG-EVFYR---ITPDRNCGI------------------ 165 (454) Q Consensus 114 ~ll~G~~~i~~~r~~~G~-----~-~~l~~l~~~~~~~~~~~~g-~~~~~---~~~~~~~~~------------------ 165 (454) ++.+|.+|+.+.++.++. + ..+.+++|..+.+.++... ...+. |........ T Consensus 69 a~i~G~ay~~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (434) T protein:vir:98 69 AMAQSAGYMLVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETGEPLVGLKVWHNDIDGFGYARVFFDDTSFPYRTRER 148 (434) T ss_pred HhhcCceEEEEecCCCcccccCCceeEEEEeccceeEEEEeCCCCceEEEEEEEEeccCCceEEEEEEeCcEEEEEEeec Confidence 999999999887665442 1 2367789998888876532 11100 100000000 Q ss_pred --------------------cceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeE Q lcl|Aclame:pro 166 --------------------TEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVI 225 (454) Q Consensus 166 --------------------~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l 225 (454) .....+..-.++||.++...+. .|.|-+..+...++..+...-......+-.+.|..++ T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~-~g~sd~e~vi~liDa~~~~~s~~~~~~~~~a~p~~~i 227 (434) T protein:vir:98 149 TGARLPWGPDSWVYTGTADSGDVHDLGGMQLVEFARMPDLGE-DPEPEFAGVLDIQDRVNLGILNRMAASRFSGFRQKWI 227 (434) T ss_pred cccccccccccceecccccccccCCCCccceEEeccCCCcCc-CCcchhhhHHHHHHHHHHHHHHHHHHHHHhcchhhhh Confidence 0001122233567765544333 6899888888888888777766666666566666555 Q ss_pred ecCc--cCCHHHHHHHHHHHHHHhcCcccCCceecC-CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccc Q lcl|Aclame:pro 226 EIPG--SITEENAKKLKSNWDSGYTGENAGKTAILS-NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQ 302 (454) Q Consensus 226 ~~~~--~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~ 302 (454) .-.. ...++. ......+ +.+.. ..+++++++ ++.++.++....-+ .+++.++..+.+|+..=++|+..+|+. T Consensus 228 ~G~~~~~~~~~~-~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~q~~~~~~~-~~~~~l~~~i~~~~~~~~~p~~~~~~~- 302 (434) T protein:vir:98 228 KGHKFAKRTDPA-TGMTVVD-QPFVP-SPSAVWASEGENTQFGQLDATDLS-GFLKEHASDVRDMLTISQTPTYLYATD- 302 (434) T ss_pred cCCCcccccccc-cccchhh-hhhhc-cccccccCCCCCceEEEecCcchH-HHHHHHHHHHHHHhcccCCCHHHhccc- Confidence 3211 111111 1111111 11211 123466665 46777776654333 378888999999999999999999853 Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------CcccceeeecchhhhhcCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 303 PPSSDNVEALEQQYYSQCLQTLIESIELLLDEALE------------TGENESTEFDVTTLLRMDSERRMKTLGDAVKNT 370 (454) Q Consensus 303 ~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~------------~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g 370 (454) .+| ++.++.. +....+.-.+...+..|...|. ......+.+.+.+....+..+.++++.++++.| T Consensus 303 ~~n-~Sg~Al~--~~~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~g~~~~~~~~~v~w~~~~~~s~~~~ada~~kl~~~g 379 (434) T protein:vir:98 303 LVN-ISADTIG--ALDILHVAKVREHIASFSEGLESVLALAAAQAGVPEDYTEAEVRWANPAHVTMAVKADAATKLKSIG 379 (434) T ss_pred cCC-hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhheeeeEEecCCCCCCHHHHHHHHHHHHhcC Confidence 222 2223222 2223333333333332222110 112335666677778889999999999999988 Q ss_pred CcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCc Q lcl|Aclame:pro 371 LLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDG 432 (454) Q Consensus 371 ~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 432 (454) + +..-+++++|+++.+ ...+.-...-..+... ......+.......+......|| T Consensus 380 ~-~~e~~~~~lg~~~~e-~~r~~~e~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~dg 434 (434) T protein:vir:98 380 Y-PLDVIAEELDESPAR-VRRIVAGAASQALLAA-----SLLPAPGAPSAGNVPDSGGAVDG 434 (434) T ss_pred C-cHHHHHHhCCCCHHH-HHHHHHHHHHHHHHHH-----hhhccCCCCCCCCCCcccCCCCC Confidence 5 677788888886531 1111100000000000 00000000000011111222233 No 150 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=99.16 E-value=3.5e-10 Score=72.40 Aligned_cols=420 Identities=9% Similarity=-0.025 Sum_probs=184.9 Q ss_pred Cc---chhhhhccccccccccCcccchhhhhhh-hhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEec Q lcl|Aclame:pro 1 MW---NLLRRTRKNQKSGRDVREAGWTSLFQAV-AEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQT 76 (454) Q Consensus 1 m~---n~f~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~ 76 (454) .. .++++...........+..-+...+.+- ...+.. ...........-...++....++..+..+.+-|+.+... T Consensus 38 ~~~~~~~i~~~i~~h~~~~~~rl~~l~~yY~g~~~~i~~~-~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~ 116 (502) T protein:vir:48 38 MVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLKS-GRRKDNEMADKRAVHNYGRMISKFKTGYLAGNPIRVEYD 116 (502) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-ccccccccccceeecchHHHHHHHHhhhhcccCeeEecC Confidence 11 1111111110000000000000111110 000000 000000000111234667778899999998889877532 Q ss_pred cccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCC--Ccee Q lcl|Aclame:pro 77 DAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADD--GEVF 154 (454) Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~--g~~~ 154 (454) +.... ..+...+.+....-........+..+++.+|.||+++.++.+|.+ .+..++|..+.+..+.. +... T Consensus 117 d~~~~------~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~-~i~~~~p~~~~~vydd~~~~~~~ 189 (502) T protein:vir:48 117 DNEDN------SQNDDAIKRIGRINDIDTHNRNLIRDLSQTGRAYEVIYRSEYDET-RIKRLSPLETFVIYDNSLEDNSI 189 (502) T ss_pred Cccch------hHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceE Confidence 22111 112222233322234556788889999999999999988888865 56788999998887642 2222 Q ss_pred eE--E-e-ccccccccceeEEehhheEEeecC----------C---------CcCcccccchhhhhHhHHHHHHHHHHHH Q lcl|Aclame:pro 155 YR--I-T-PDRNCGITEAVTVPAREVIHDRFN----------C---------FFHPLIGLPPVYAAGLAATQGHHIQENS 211 (454) Q Consensus 155 ~~--~-~-~~~~~~~~~~~~~~~~~vih~~~~----------~---------~~~~~~G~s~l~~~~~~i~~~~~~~~~~ 211 (454) +. + . ............+..+.++++... . -.+...|+|-+..+...++....+.--. T Consensus 190 ~~ir~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~ 269 (502) T protein:vir:48 190 AAVRYYNRGTLQNAKDVVEIYTNQHIYTLDASDSFNEISVTPHAFGTVPITEFLNNADGIGDYETELYLIDLYDSAESDT 269 (502) T ss_pred EEEEEEEEeecCCcEEEEEEEeCCeEEEEEeCCceeeccceecCCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHH Confidence 11 1 1 000000000111222222221110 0 0123368888888888888777777777 Q ss_pred HHHHhccCCcceeEecCccCC-HHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 212 TSFFRNGGRPSGVIEIPGSIT-EENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSV 290 (454) Q Consensus 212 ~~~~~ng~~p~~~l~~~~~~s-~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~ 290 (454) .+.+.....|-.++....... ++....++.. ...+. ...+.....+++.++.-++.......+....+...+.|+.. T Consensus 270 ~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~L~~~I~~~ 347 (502) T protein:vir:48 270 ANHMSDMADAILAIYGDLALPQGMQASDMKRT-RLMQL-KPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNKDIHVF 347 (502) T ss_pred HHHHHHhcCceeeeecCcccccccchhhhhhc-ceeec-cccccccccccCcceeEeeecCCHHHHHHHHHHHHHHHHHH Confidence 777777777777665533222 1222221111 00000 00000111234455555554444445666788899999999 Q ss_pred hccchhhhcccccccccCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhcC--cccceeeecchhhhhcC Q lcl|Aclame:pro 291 FRVPAYKIGVGQPPSSDNVEALEQ-------------QYYSQCLQTLIESIELLLDEALET--GENESTEFDVTTLLRMD 355 (454) Q Consensus 291 fgvp~~~lg~~~~~~~~n~e~~~~-------------~~~~~~i~P~~~~ie~~l~~~l~~--~~~~~~~f~~~~l~~~d 355 (454) -++|....+... ++- +.++... ..+...+.-+++.+...++..--. .....+.+.|...+..| T Consensus 348 s~~p~~~~~~~~-~n~-Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d 425 (502) T protein:vir:48 348 TNTPDMSDNHFS-GNA-SGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESRLKITFTPNLPKS 425 (502) T ss_pred hCCCCcCccccc-cCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCCCCCcC Confidence 999976554321 222 2222221 222333333333333333322111 11234567777788889 Q ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccc Q lcl|Aclame:pro 356 SERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKA 435 (454) Q Consensus 356 ~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 435 (454) ..+.++.+.++ .|+++..-+.+++++-..+..+.-.+..--...+. . ..........+...+...+...++.+. T Consensus 426 ~~e~a~~~~kl--~g~iS~et~l~~l~~v~D~~~E~~ri~~E~~~~~~--~-~~~~~~~~~~~~~~d~~~e~~~~~~~~- 499 (502) T protein:vir:48 426 LYEQVSILNDL--GGQVSQETALSLSGLVENPTEELDKINEESSKIDF--K-GYPSYFYDNVGKYTDEVKETHTDDFER- 499 (502) T ss_pred HHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh--h-cccccccccccccCCCccCCCCcCcCC- Confidence 99999999888 47898888888876532211111111000000000 0 000000000000000000111111111 Q ss_pred ccc Q lcl|Aclame:pro 436 ITE 438 (454) Q Consensus 436 ~~~ 438 (454) ..| T Consensus 500 ~~~ 502 (502) T protein:vir:48 500 VYE 502 (502) T ss_pred CCC Confidence 111 No 151 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=99.13 E-value=2.4e-10 Score=73.32 Aligned_cols=404 Identities=13% Similarity=0.036 Sum_probs=179.4 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhh-ccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEP-FAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) |.+-+......- .-...++.+.-.. ..+... ..-.......+.+...+|+..++.+...+|.+- + T Consensus 21 L~~~~~~~~~r~--------~~~~~YY~G~~~i~~~~~~~--~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~~----~ 86 (485) T protein:vir:24 21 MVSAFEDQNQNL--------RSNTSYYEAERRPEAIGVTV--PVQMQSLLAHVGYPRLYVDSIAERQAVEGFRLG----D 86 (485) T ss_pred HHHHHHHHHHHH--------HHHHHHHhccCchhhcCccc--chhhhhhhhccchHHHHHHHHhhhhccCceecC----C Confidence 222221110000 0000111110000 000000 000011122234566677777776655555431 1 Q ss_pred ccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCce-------eEEEEecCcceEEEECCC-C Q lcl|Aclame:pro 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQI-------KELRILDWNRVEPLVADD-G 151 (454) Q Consensus 80 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~-------~~l~~l~~~~~~~~~~~~-g 151 (454) +.. ....+..++.. | +...+...+..+++.+|.||+++.++.++.. ..+.+++|..+.+.++.. + T Consensus 87 ~~~---~~~~l~~i~~~-N---~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~i~D~~~~ 159 (485) T protein:vir:24 87 ADE---ADEELWQWWQA-N---NLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRVEPPTRMYAEIDPRIG 159 (485) T ss_pred Cch---hHHHHHHHHHh-c---ChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEEeccceeEEEeeCCcC Confidence 111 11223333332 2 3445778889999999999999887765432 257788898888887643 2 Q ss_pred ceee--EEeccccc-------------------cc-------cceeEEehhheEEeecCCCcCcccccchhhh-hHhHHH Q lcl|Aclame:pro 152 EVFY--RITPDRNC-------------------GI-------TEAVTVPAREVIHDRFNCFFHPLIGLPPVYA-AGLAAT 202 (454) Q Consensus 152 ~~~~--~~~~~~~~-------------------~~-------~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~-~~~~i~ 202 (454) ...+ .+...... .. ..+..+..-.|++|++.....+.+|.|-+.. +...++ T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~liD 239 (485) T protein:vir:24 160 RPAKAIRVAYDAEGNEIQAATLYTPNETFGWFRAEGEWVEWFSDPHGLGAVPVVPLPNRTRLSDLYGTSEITPELRSMTD 239 (485) T ss_pred ceeEEEEEEEeecCCeEEEEEEEcCCcEEEEEecCCceEeecccccCCCcccEEEeccCcccCCcCCcccchhhHHHHHH Confidence 1111 11000000 00 0111223334577776666667788887653 444455 Q ss_pred HHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecC-CCceeeeccccchhhHHHHHHH Q lcl|Aclame:pro 203 QGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILS-NGAKYNPTTFSPVDSQTVEQLK 281 (454) Q Consensus 203 ~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~d~~~~e~~~ 281 (454) ..+.+.--........+.|..++.. .+.++.....+.-...+. ...+.+++++ ++.++.++....-+ .+++.++ T Consensus 240 a~~~~~s~~~~~~~~~a~p~~~i~G---~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~q~~~~~~e-~~~~~l~ 314 (485) T protein:vir:24 240 AAARILMLMQATAELMGVPQRLIFG---IKPEEIGVDPETGQTLFD-AYLARILAFEDAEGKIQQFSAAELA-NFTNALD 314 (485) T ss_pred HHHHHHHHHHHHHHhhcchhhhhcc---CCccccccccccccchhh-hcccceeccCCCCceEEeecccchH-HHHHHHH Confidence 4444433333334444556555432 111111111000011111 1134456664 56777666654333 3778888 Q ss_pred HHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------c-----Ccccceeee Q lcl|Aclame:pro 282 MTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEAL----------E-----TGENESTEF 346 (454) Q Consensus 282 ~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l----------~-----~~~~~~~~f 346 (454) ....+++..=++|+..+|+... |.++.++.. +....+.-.+...+..|...| . ......+++ T Consensus 315 ~~i~~~s~~~~~p~~~fg~~~~-n~~Sg~Al~--~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~~~d~~~i~v 391 (485) T protein:vir:24 315 QIAKQVAAYTGLPPQYLSTAAD-NPASAEAIR--AAESRLIKKVERKNAIFGGAWEEAMRLAYRLMKGGDVPPDMLRMET 391 (485) T ss_pred HHHHHHhcccCCCHHHhccccC-cchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeE Confidence 8888888889999999986543 222222222 222222222333322222211 1 112235566 Q ss_pred cchhhhhcCHHHHHHHHHHHHhCC--CcCHHHHHHHhcCCCCCC--ccccc---cccccccccccccccccccCCCccCc Q lcl|Aclame:pro 347 DVTTLLRMDSERRMKTLGDAVKNT--LLTPNEARKRENLPPLAG--GDALY---LQQQNYSLEALSRRDAREDPFASSGK 419 (454) Q Consensus 347 ~~~~l~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~~g~~p~~~--~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (454) .|......+..+.++.+.+++.+| +++..-+++++|+.+.+- ..... .......++......... +.++... T Consensus 392 ~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l~~~~d~~~e~~~~~ee~~~~~~~~~~~~~~~~~~~-~~~~~~~ 470 (485) T protein:vir:24 392 VWRDPSTPTYAAKADAATKLYGNGQGVIPRERARKDMGYSIAEREEMRRWDEEEAAMGLGLLGTMVDADPTV-PGSPNPT 470 (485) T ss_pred EecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHhhCCCCHhHHHHHHHHHHHHhhhhhhHHHhhcccCCCC-CCCCCCC Confidence 777777788888999999999876 677777888888865321 11100 000111111111110000 0000000 Q ss_pred ccCCCCCCcccCcccccccccccHH Q lcl|Aclame:pro 420 TASVPQAVAASDGNKAITETEHDAV 444 (454) Q Consensus 420 ~~~~~~~~~~~d~~~~~~~~~~~~~ 444 (454) .... ..+..+.+ +++ T Consensus 471 e~~~-~~~~~~~~---------~~a 485 (485) T protein:vir:24 471 PAPK-PQPAIEGG---------DSA 485 (485) T ss_pred CCCC-CccCCCCC---------CCC Confidence 0000 00000001 111 No 152 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=99.11 E-value=1.8e-09 Score=68.50 Aligned_cols=413 Identities=8% Similarity=0.005 Sum_probs=180.4 Q ss_pred Ccchhhhhcccccc------ccccCcccc-hhhh------------hhhhhhcccccc-----------CCccc----cH Q lcl|Aclame:pro 1 MWNLLRRTRKNQKS------GRDVREAGW-TSLF------------QAVAEPFAGAWQ-----------QGVKA----DP 46 (454) Q Consensus 1 m~n~f~r~~~~~~~------~~~~~~~~~-~~~~------------~~~~~~~~~~~~-----------~~~~~----~~ 46 (454) |.|+|-+....-.. ........+ .... .-+...+.+... .+... .. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (503) T protein:vir:59 1 MADIYPLGKTHTEELNEIIVESAKEIAEPDTTMIQKLIDEHNPEPLLKGVRYYMCENDIEKKRRTYYDAAGQQLVDDTKT 80 (503) T ss_pred CcccccCChhhHHhHHHhhhhhhhhccchhHHHHHHHHHhhcHHHHHHHHHHhccccchhhccchhcccccccccccccc Confidence 66665332111000 000000000 0000 000000000000 00000 00 Q ss_pred HHHHhhHHHHHHHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEee Q lcl|Aclame:pro 47 EAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIR 126 (454) Q Consensus 47 ~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r 126 (454) ..-+.++....+|+..+..+.+-|+.+.. .+. .....+..++. | +.......+..+++.+|.+|+.+-. T Consensus 81 ~~ri~~n~~~~ivd~~~~yl~g~~~~~~~--~d~----~~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~ 149 (503) T protein:vir:59 81 NNRTSHAWHKLFVDQKTQYLVGEPVTFTS--DNK----TLLEYVNELAD--D---DFDDILNETVKNMSNKGIEYWHPFV 149 (503) T ss_pred cceeecchHHHHHHHHHhhhhcCCeeecc--CcH----HHHHHHHHHHh--c---CHHHHHHHHHHHHhhCCeEEEEEee Confidence 01122566778889999999888877632 111 11112333332 2 3455677788889999999999988 Q ss_pred CCCCceeEEEEecCcceEEEECCC--CceeeE---Eecc-cccc-ccceeEEehhheEEeecC----------------- Q lcl|Aclame:pro 127 NARGQIKELRILDWNRVEPLVADD--GEVFYR---ITPD-RNCG-ITEAVTVPAREVIHDRFN----------------- 182 (454) Q Consensus 127 ~~~G~~~~l~~l~~~~~~~~~~~~--g~~~~~---~~~~-~~~~-~~~~~~~~~~~vih~~~~----------------- 182 (454) +.+|.+ .+..++|..+.+.++.. +...+. |... .... ......+.+..+.++... T Consensus 150 d~dg~~-~i~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 228 (503) T protein:vir:59 150 DEEGEF-DYVIFPAEEMIVVYKDNTRRDILFALRYYSYKGIMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYGENNPRP 228 (503) T ss_pred cCCCce-EEEEEccceeEEEEeCCCCCceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEEcCCccccccccccccccc Confidence 888875 47889999988887653 221111 1100 0000 000011222222222110 Q ss_pred -----------------CCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHH Q lcl|Aclame:pro 183 -----------------CFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDS 245 (454) Q Consensus 183 -----------------~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~ 245 (454) .-.+...|.|-+..+...++..+.+.-.....+...+.|-.++.--..... +.....+. T Consensus 229 ~~~~~~~~~~~~~vPiv~~~nn~~~~sd~~~~~~liDa~d~~~s~~~~~~~~~~~~~~v~~g~~~~~~---~~~~~~~~- 304 (503) T protein:vir:59 229 HMTKGGQAIGWGRVPIIPFKNNEEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLKNYDGENP---KEFTANLR- 304 (503) T ss_pred ceeecceeccCCccceEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCeeEeecCCcccc---chhhhhhh- Confidence 001233578877777777777666655555556666777666543222111 11111111 Q ss_pred HhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHH------------- Q lcl|Aclame:pro 246 GYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEAL------------- 312 (454) Q Consensus 246 ~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~------------- 312 (454) ..+++.++++.+++.+........+....+...+.|+..-++|..-.+.. .++- +..+. T Consensus 305 ------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-~~~~-Sg~Ai~~~~~~l~~k~~~ 376 (503) T protein:vir:59 305 ------YHSVIKVSGDGGVDTLRAEIPVDSAAKELERIQDELYKSAQAVDNSPETI-GGGA-TGPALENLYALLDLKANM 376 (503) T ss_pred ------cccceeccCCCcceeEeccCCHHHHHHHHHHHHHHHHHHhcccCCCcccc-cccc-cHHHHHHHHHHHHHHHHH Confidence 22355565555554444444444556666677777766666664322111 1111 11111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCc--ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcc Q lcl|Aclame:pro 313 EQQYYSQCLQTLIESIELLLDEALETG--ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGD 390 (454) Q Consensus 313 ~~~~~~~~i~P~~~~ie~~l~~~l~~~--~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d 390 (454) ....+...+.-+++.|...++..-... ....+.+.|..-+..|..+.++.+.+++.+|+++...+.++++.-+.+..+ T Consensus 377 ~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~~~~~~~~kl~~~GiiS~et~l~~l~~v~d~~~E 456 (503) T protein:vir:59 377 AERKIRAGLRLFFWFFAEYLRNTGKGDFNPDKELTMTFTRTRIQNDSEIVQSLVQGVTGGIMSKETAVARNPFVQDPEEE 456 (503) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEeCCCCCCCHHHHHHHHHHHHhCCCCchHHHHHhCCCCCCHHHH Confidence 112223333333333333333211111 123467777888889999999999999999999988888887653321111 Q ss_pred ccccccccccccccccccccccCCCccCcccCCCCCCcccCccccccccccc Q lcl|Aclame:pro 391 ALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHD 442 (454) Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 442 (454) .-.+..- .+.... ................++..+....++....+.. T Consensus 457 ~~ri~~E---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 503 (503) T protein:vir:59 457 LARIEEE---MNQYAE--MQGNLLDDEGGDDDLEEDDPNAGAAESGGAGQVS 503 (503) T ss_pred HHHHHHH---HHHHHh--hhccccCccCCCCCCCcCCCCCCcccCCCCCCcC Confidence 0010000 000000 0000000000000000111111111111111111 No 153 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=99.11 E-value=8.3e-10 Score=70.37 Aligned_cols=415 Identities=8% Similarity=-0.042 Sum_probs=183.9 Q ss_pred Ccch---hhhhccccccccccCcccchhhhhhh-hhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEec Q lcl|Aclame:pro 1 MWNL---LRRTRKNQKSGRDVREAGWTSLFQAV-AEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQT 76 (454) Q Consensus 1 m~n~---f~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~ 76 (454) +.+. +.+...........+..-....+.+- ..++... .......+..-+..++...+|+..+..+-+-|+.+... T Consensus 37 ~~~~~~~i~~~i~~~~~~~~~r~~~~~~yY~g~~~~i~~~~-~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~~ 115 (501) T protein:vir:96 37 MVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLKSG-RRKDNEMADKRAVHNYGRMISKFKTGYLAGNPIRVEYD 115 (501) T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcc-ccCccccccceeecchHHHHHHHHhhhhcccCeeEeeC Confidence 1111 11111100000000000000001000 0000000 00000011112346677788899888888888877533 Q ss_pred cccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCC--Ccee Q lcl|Aclame:pro 77 DAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADD--GEVF 154 (454) Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~--g~~~ 154 (454) +++. ...+..++.+....-........+..+++.+|.+|+.+.++.+|.+ .+..++|..+.+..+.. +... T Consensus 116 ~~~~------~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~-~i~~~~p~~~~~v~d~~~~~~~~ 188 (501) T protein:vir:96 116 DNDD------NSQNDDAIKRIGRINDLDSLNRTLIRDLSQTGRAYEVIYRSEYDET-RIKRLSPLETFVIYDNSLEDNSI 188 (501) T ss_pred Cccc------hhHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcCCCce-EEEEEccceeEEEEcCCCCCceE Confidence 2211 1122222333333335566788889999999999999988888865 57788999999888753 3222 Q ss_pred eEE---ec-cccccccceeEEehhh------------------------eEEeecCCCcCcccccchhhhhHhHHHHHHH Q lcl|Aclame:pro 155 YRI---TP-DRNCGITEAVTVPARE------------------------VIHDRFNCFFHPLIGLPPVYAAGLAATQGHH 206 (454) Q Consensus 155 ~~~---~~-~~~~~~~~~~~~~~~~------------------------vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~ 206 (454) +.+ .. ...........+.++. |++++ +...|.|.+..+...++..+. T Consensus 189 ~~v~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----nn~~g~sd~e~v~~liDa~d~ 263 (501) T protein:vir:96 189 AAVRYYNRGTLQSAKDVVEIYTDEHIYTLDASDDFNEISVTTHAFGTVPITEYL-----NNIDGIGDYETELYLIDLYDS 263 (501) T ss_pred EEEEEEEeecCCCcEEEEEEEcCCcEEEEeeCCCceeccccccCCCccceEEec-----CCccCCCchhhhHHHHHHHHH Confidence 111 10 0000000000111122 33333 223688888888888887777 Q ss_pred HHHHHHHHHhccCCcceeEecCccCC-HHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHH Q lcl|Aclame:pro 207 IQENSTSFFRNGGRPSGVIEIPGSIT-EENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAE 285 (454) Q Consensus 207 ~~~~~~~~~~ng~~p~~~l~~~~~~s-~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~ 285 (454) +.--..+.+...+.|-.++....... ++....++..- .+.-...+.......+.++.-++....+..+....+...+ T Consensus 264 ~~s~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 341 (501) T protein:vir:96 264 AESDTANHMSDMADAILAIYGDLALPKGMQASDMKRTR--LMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNR 341 (501) T ss_pred HHHHHHHHHHHhcCceeeeecccccCcccchhhhhhcC--eeeecccccccccccCcceeeEeccCCHHHHHHHHHHHHH Confidence 76666666666677776665432222 12222221100 0000111111122344454444444445556777888899 Q ss_pred HHHHHhccchhhhcccccccccCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhc--Ccccceeeecchh Q lcl|Aclame:pro 286 IVCSVFRVPAYKIGVGQPPSSDNVEALEQ-------------QYYSQCLQTLIESIELLLDEALE--TGENESTEFDVTT 350 (454) Q Consensus 286 ~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~-------------~~~~~~i~P~~~~ie~~l~~~l~--~~~~~~~~f~~~~ 350 (454) .|+..-++|....+... +|- +.++... ..+..+++-+++.+...++..-- ......+.+.+.. T Consensus 342 ~I~~~s~~p~~~~~~~~-~n~-Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~ 419 (501) T protein:vir:96 342 DIHIFTNTPDMSDTNFS-GNT-SGEALKYKLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLVNEFKDFDESLLKITFTP 419 (501) T ss_pred HHHHHhCCcccCccccc-ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeCC Confidence 99999999976554332 222 1122211 12222333333333332222110 0111235666777 Q ss_pred hhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCccc Q lcl|Aclame:pro 351 LLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAAS 430 (454) Q Consensus 351 l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (454) .+..+..+.++.+.++. |+++..-+.+++++-..+....-.+..-....+ ...............+++.. T Consensus 420 ~~p~n~~e~ad~~~kl~--g~iS~et~~~~l~~v~D~~~E~~ri~~E~~~~~--------~~~~~~~~~~~~~~~~~~~~ 489 (501) T protein:vir:96 420 NLPKSLNEQVSILTGLG--GQVSQETALSLSGLVESPNEELDKINKEMSEID--------FKGYSNDFNEHVGKYTDEVK 489 (501) T ss_pred CCCcCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHHHHHHHHHhh--------ccccccchhhcccccCCcCC Confidence 78889999999999885 788887788877653211111101110000000 00000000000000111111 Q ss_pred Cccccccccccc Q lcl|Aclame:pro 431 DGNKAITETEHD 442 (454) Q Consensus 431 d~~~~~~~~~~~ 442 (454) +.+....|...+ T Consensus 490 e~~~d~~e~~~~ 501 (501) T protein:vir:96 490 ETHTDDFEREYE 501 (501) T ss_pred CCCCCccccccC Confidence 111111111111 No 154 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=99.10 E-value=9.3e-11 Score=75.57 Aligned_cols=406 Identities=13% Similarity=0.038 Sum_probs=174.3 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +...+-+....+.. +..-...++.+--.....+.. -............+...+|+.+++.+--..|.+- ++ T Consensus 17 ~~~~l~~~~~~~~~----r~~~l~~YY~G~~~i~~~~~~-~~~~~~~~~~v~n~~~~iVd~~~~~l~~~g~~~~----~~ 87 (486) T protein:vir:42 17 VREEMISAFEDASK----DLASNTSYYDAERRPEAIGVT-VPREMQQLLAHVGYPRLYVDSVAERQAVEGFRLG----DA 87 (486) T ss_pred HHHHHHHHHHHHHH----HHHHHHHHhcccCcchhcccc-cchhHhhhhhccchHHHHHHHHHhhhcccceecC----CC Confidence 11111111000000 000000111110000000000 0000001112245667788877777654555431 11 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCc-------eeEEEEecCcceEEEECCCC-c Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQ-------IKELRILDWNRVEPLVADDG-E 152 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~-------~~~l~~l~~~~~~~~~~~~g-~ 152 (454) .. ....+..++.. | ........+..+++.+|.+|+.+.++..|. ...+.+++|..+.++++... . T Consensus 88 ~~---~~~~~~~i~~~-N---~~d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~i~d~~~~~ 160 (486) T protein:vir:42 88 DE---ADEELWQWWQA-N---NLDIEAPLGYTDAYVHGRSFITISKPDPQLDLGWDQNVPIIRVEPPTRMHAEIDPRINR 160 (486) T ss_pred ch---hHHHHHHHHHh-c---ChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCeeEEEEecccceEEEEeCCCCC Confidence 11 12223334332 3 234456778899999999999887765332 23667889998888876421 1 Q ss_pred eeeEE--eccccc-------------------ccc-------ceeEEehhheEEeecCCCcCcccccchhhh-hHhHHHH Q lcl|Aclame:pro 153 VFYRI--TPDRNC-------------------GIT-------EAVTVPAREVIHDRFNCFFHPLIGLPPVYA-AGLAATQ 203 (454) Q Consensus 153 ~~~~~--~~~~~~-------------------~~~-------~~~~~~~~~vih~~~~~~~~~~~G~s~l~~-~~~~i~~ 203 (454) ..+.+ ...... ..+ .+..+..-.|++|.++....+.+|.|-+.. +...++. T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa 240 (486) T protein:vir:42 161 VSKAIRVAYDKEGNEIQAATLYTPMETIGWFRADGEWAEWFNVPHGLGVVPVVPLPNRTRLSDLYGTSEITPELRSMTDA 240 (486) T ss_pred eEEEEEEEEecCCCeEEEEEEEcCCcEEEEEecCCcEEeecceecCCCCceEEEeccccccCCCCCcccchhhHHHHHHH Confidence 11111 000000 000 011122223566665555566778886542 3333333 Q ss_pred HHHHHHHHHHHHhccCCcceeEecCccCCHHHHH----HHHHHHHHHhcCcccCCceecC-CCceeeeccccchhhHHHH Q lcl|Aclame:pro 204 GHHIQENSTSFFRNGGRPSGVIEIPGSITEENAK----KLKSNWDSGYTGENAGKTAILS-NGAKYNPTTFSPVDSQTVE 278 (454) Q Consensus 204 ~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~----~~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~d~~~~e 278 (454) .+...--......-.+.|..++.. .+.++.. +-...|+. ..+++++++ ++.++.++.....+ .+++ T Consensus 241 ~~~~~s~~~~~~e~~a~p~~~i~G---~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~q~~~~~~e-~~~~ 311 (486) T protein:vir:42 241 AARILMLMQATAELMGVPQRLIFG---IKPEEIGVDSETGQTLFDA-----YLARILAFEDAEGKIQQFSAAELA-NFTN 311 (486) T ss_pred HHHHHHHHHHHHHhhcchHHHhhc---CCccccccccccccchhhh-----hhchhcccCCCCceEEeecccCHH-HHHH Confidence 333333333333334445544432 1111111 01111211 134566664 56677666544333 3788 Q ss_pred HHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHh----------h-----cCcccce Q lcl|Aclame:pro 279 QLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEA----------L-----ETGENES 343 (454) Q Consensus 279 ~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~----------l-----~~~~~~~ 343 (454) .++....+++..=++|+..+|+... |-++.++....+ ..+.-.+...+..|... + .+..... T Consensus 312 ~l~~~i~~~s~~~~~p~~~fg~~~~-n~~Sg~Al~~~~--~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~~~d~~~ 388 (486) T protein:vir:42 312 ALDQIAKQVAAYTGLPPQYLSTAAD-NPASAEAIRAAE--SRLIKKVERKNLMFGGAWEEAMRIAYRIMKGGDVPPDMLR 388 (486) T ss_pred HHHHHHHHHhcccCCCHHHhccccC-chhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccee Confidence 8888899999999999999986543 222333322222 11211222211111111 1 1112235 Q ss_pred eeecchhhhhcCHHHHHHHHHHHHhC--CCcCHHHHHHHhcCCCCCC--cccccc---ccccccccccccccccccCCCc Q lcl|Aclame:pro 344 TEFDVTTLLRMDSERRMKTLGDAVKN--TLLTPNEARKRENLPPLAG--GDALYL---QQQNYSLEALSRRDAREDPFAS 416 (454) Q Consensus 344 ~~f~~~~l~~~d~~~~~~~~~~~~~~--g~~T~NE~R~~~g~~p~~~--~d~~~~---~~~~~~~~~~~~~~~~~~~~~~ 416 (454) +++.+......+..+.++.+.+++++ |+++..-+++++|+.+.+- .....- ......++......... +.++ T Consensus 389 i~v~w~~~~~~s~~~~ad~~~kl~~~~~g~~s~et~~~~lg~~~d~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~ 467 (486) T protein:vir:42 389 METVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARIDMGYSVKEREEMRRWDEEEAAMGLGLLGTMVDADPTV-PGSP 467 (486) T ss_pred eeEEecCCCCCCHHHHHHHHHHHHhcccCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCCC Confidence 66777777788889999999999987 6777777888888864321 111000 00000011111110000 0001 Q ss_pred cCcccCCCCCCcccCcccc Q lcl|Aclame:pro 417 SGKTASVPQAVAASDGNKA 435 (454) Q Consensus 417 ~~~~~~~~~~~~~~d~~~~ 435 (454) .......+++..+..+... T Consensus 468 ~~~~~~~~~~~~~~~~~~~ 486 (486) T protein:vir:42 468 SPTAPPKPQPAIESSGGDA 486 (486) T ss_pred CCCCCCCCCcccCCCCCCC Confidence 1111111111111111111 No 155 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=99.08 E-value=1.2e-09 Score=69.47 Aligned_cols=416 Identities=10% Similarity=-0.032 Sum_probs=183.9 Q ss_pred Ccc---hhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecc Q lcl|Aclame:pro 1 MWN---LLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTD 77 (454) Q Consensus 1 m~n---~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~ 77 (454) +.+ ++++...........+..-+..++.+--.................-+..+....+++..+..+-+-|+.+...+ T Consensus 37 ~~~~~~~l~~~i~~~~~~~~~r~~~l~~yY~g~~~~i~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d 116 (501) T protein:vir:27 37 MVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLQFGRRKDREMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDD 116 (501) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCccCccccccceeccchHHHHHHHHhhhhcccCeeEecCC Confidence 212 12221111000000000000011111000000000000000111123356777888999999988888775322 Q ss_pred ccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCC--Cceee Q lcl|Aclame:pro 78 AQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADD--GEVFY 155 (454) Q Consensus 78 ~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~--g~~~~ 155 (454) .+.. ......+..++ ..-........+..+++.+|.+|+++-++.+|.+ .+..++|..+.++.+.. +...+ T Consensus 117 ~~~~--~~~~~~l~~~~----~~n~~~~~~~~~~~~~~~~G~a~~~vy~ded~~~-~i~~~~p~~~~~v~d~~~~~~~~~ 189 (501) T protein:vir:27 117 NDNN--SQNDDTIKRIG----RINDIDSHNRTLIRDLSQTGRAYEVIYRNEYDET-RIKRLNPLETFVIYDNSLEDNSIA 189 (501) T ss_pred ccch--HHHHHHHHHHH----HhcChhHHHHHHHHHHhhCCeEEEEEEeCCCCce-EEEEEccceeEEEecCCCCCceEE Confidence 2111 11111122222 2224556788889999999999999988888865 46778999998887653 22211 Q ss_pred E--Eec--cccccccceeEEehhh------------------------eEEeecCCCcCcccccchhhhhHhHHHHHHHH Q lcl|Aclame:pro 156 R--ITP--DRNCGITEAVTVPARE------------------------VIHDRFNCFFHPLIGLPPVYAAGLAATQGHHI 207 (454) Q Consensus 156 ~--~~~--~~~~~~~~~~~~~~~~------------------------vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~ 207 (454) . ++. ...........+..+. |++++ +...|.|-+..+...++....+ T Consensus 190 ~ir~~~~~~~~~~~~~~~vyt~~~v~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----nn~~g~sd~e~v~~liDa~d~~ 264 (501) T protein:vir:27 190 AVRYYNRGTLQNAKDVVEIYTNEHIYTLDASDDFNEISVTTHAFGTVPITEFL-----NNVDGIGDYETELYLIDLYDSA 264 (501) T ss_pred EEEEEEeeecCCcEEEEEEEeCCeEEEEEeCCceeeccccccCCCcccEEEec-----CCCCCCCchhhhHHHHHHHHHH Confidence 1 110 0000000000111111 23332 2236888888888888777777 Q ss_pred HHHHHHHHhccCCcceeEecCccC-CHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHH Q lcl|Aclame:pro 208 QENSTSFFRNGGRPSGVIEIPGSI-TEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEI 286 (454) Q Consensus 208 ~~~~~~~~~ng~~p~~~l~~~~~~-s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~ 286 (454) .--....+.....|-.++...... .++....++.. ..+.-...+.....+++.++.-++....+..+....+...+. T Consensus 265 ~S~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 342 (501) T protein:vir:27 265 ESDTANHMSDMADAILAIYGDLALPKGMQASDMKRT--RLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRD 342 (501) T ss_pred HHHHHHHHHHhcCceeeeecCccCCcccchhhhhhc--CceeecccccccCCCCCcceeeeeccCCHHHHHHHHHHHHHH Confidence 766666666666666666543222 22222222211 011001111122344555666555555555667778888999 Q ss_pred HHHHhccchhhhcccccccccCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhcC--cccceeeecchhh Q lcl|Aclame:pro 287 VCSVFRVPAYKIGVGQPPSSDNVEALEQ-------------QYYSQCLQTLIESIELLLDEALET--GENESTEFDVTTL 351 (454) Q Consensus 287 Ia~~fgvp~~~lg~~~~~~~~n~e~~~~-------------~~~~~~i~P~~~~ie~~l~~~l~~--~~~~~~~f~~~~l 351 (454) |+..-++|....+... +|- +..+... ..+...+.-++..|...++..--. .....+.+.|..- T Consensus 343 I~~~s~~p~~~~~~~~-~n~-Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~v~f~~~ 420 (501) T protein:vir:27 343 IHIFTNIPDMSDTNFS-GNT-SGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESLLKITFTPN 420 (501) T ss_pred HHHHhCCcccCccccc-cCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCCC Confidence 9999999975443321 221 2222211 122223333333333332221110 1122456777777 Q ss_pred hhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccC Q lcl|Aclame:pro 352 LRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASD 431 (454) Q Consensus 352 ~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 431 (454) +..+..+.++.+.++ .|+++..-+.+++++-..|....-.+..-....+ .......-....+.......+. T Consensus 421 ~p~n~~e~ad~~~kl--~g~iS~et~l~~l~~v~D~~~E~eri~~E~~e~~---~~~~~~~~~~~~~~~~d~~~~~---- 491 (501) T protein:vir:27 421 LPKSLNEQVSILTGL--GGQVSQETALSLSGLVESPNEELDKINKEVSEID---FKGYSNDFNEHVGKYTDEVKET---- 491 (501) T ss_pred CCcCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHHhhh---HhhhcCccccccccccCCCCCC---- Confidence 888999999998887 4788887788877553211111001100000000 0000000000001110111111 Q ss_pred cccccccccccHHH Q lcl|Aclame:pro 432 GNKAITETEHDAVK 445 (454) Q Consensus 432 ~~~~~~~~~~~~~~ 445 (454) ..+++.++.+ T Consensus 492 ----~~d~~e~~~~ 501 (501) T protein:vir:27 492 ----HTDDFERAYE 501 (501) T ss_pred ----ccccccccCC Confidence 1111111111 No 156 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=99.07 E-value=1.2e-09 Score=69.53 Aligned_cols=426 Identities=10% Similarity=0.013 Sum_probs=172.1 Q ss_pred CcchhhhhccccccccccCccc--c-hhhhhh----------hhhhccccc-cC--CccccH---HHHHhhHHHHHHHHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAG--W-TSLFQA----------VAEPFAGAW-QQ--GVKADP---EAVLSFHAVFACISL 61 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~--~-~~~~~~----------~~~~~~~~~-~~--~~~~~~---~~~~~~~~v~~~i~~ 61 (454) |--+++....-..+...+.... + ..+..- +...+-+.. .. +..+.. +......+...+|+. T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~e~~~i~~L~~~~~~~~~r~~~l~~YY~G~~~i~~~~~~~p~~~~~~~~v~n~~~~iVd~ 80 (504) T protein:vir:99 1 MTEETTSASKFTFRIPELNDDVVDKVNGLYQQLVDRTPRNLLRASFYDGKYAIRQIGNLIPPEYLRTATVLGWSAKAVDT 80 (504) T ss_pred CCccCCcccccccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccchhccccccHHHHHHhhccCcHHHHHHH Confidence 3222221111111111111110 0 000000 000000000 00 011111 111223455567777 Q ss_pred HHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCcee-EEEEecC Q lcl|Aclame:pro 62 ISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIK-ELRILDW 140 (454) Q Consensus 62 ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~-~l~~l~~ 140 (454) +++.+.--.|.+ . ++. .....++.++.. |. .......+..+.+.+|.+|+.+..+.+|.+. .+.+++| T Consensus 81 ~a~rl~~~Gf~~---~-d~~---~~~~~l~~i~~~-N~---ld~~~~~~~~~a~iyG~af~~v~~~~d~~~~~~I~~~sP 149 (504) T protein:vir:99 81 LARRCNLESFVW---P-DGD---YGSIGGPDVWDE-NF---FATKANNAMVSSLIHGPAFLINTEGGAGEPDSLIHVKSA 149 (504) T ss_pred HHhhhccceeeC---C-CCC---hhhHHHHHHHHh-cC---hhhHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEecc Confidence 776554334432 1 111 112223344333 33 2345678888999999999999888888754 5678899 Q ss_pred cceEEEECCCC-ceeeE--Ee-ccccccccceeEEehh------------------------heEEeecCCCcCcccccc Q lcl|Aclame:pro 141 NRVEPLVADDG-EVFYR--IT-PDRNCGITEAVTVPAR------------------------EVIHDRFNCFFHPLIGLP 192 (454) Q Consensus 141 ~~~~~~~~~~g-~~~~~--~~-~~~~~~~~~~~~~~~~------------------------~vih~~~~~~~~~~~G~s 192 (454) ..+.+++|... ...+. ++ .+..........+.++ .|++|.+....+..+|.| T Consensus 150 ~~~~~iyD~~~~~~~~a~~~~~~d~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~gvPvV~~~n~~~~~~~~G~s 229 (504) T protein:vir:99 150 MQATGEWNSRRNAMDSLLSITSRDAEGHPTGIALYEDGVTVTADMDDDGDWHADVRTHKLGVPVEVLPYKPREDRPLGSS 229 (504) T ss_pred ceeEEEEeCCCCceeEEEEEEEecCCCeEEEEEEEcCCcEEEEEEcCCceeeeccccCCCCcceEEecccccCccccCcc Confidence 99988776522 11111 11 0000000000011111 155665554455667777 Q ss_pred hhh-hhHhHHHHHHHHHHHHHHHHhccCCcceeEe-cCc-cCCHH---HHHHHHHHHHHHhcCcccCCceec-CCCceee Q lcl|Aclame:pro 193 PVY-AAGLAATQGHHIQENSTSFFRNGGRPSGVIE-IPG-SITEE---NAKKLKSNWDSGYTGENAGKTAIL-SNGAKYN 265 (454) Q Consensus 193 ~l~-~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~-~~~-~~s~e---~~~~~~~~~~~~~~g~n~g~~~vl-~~g~~~~ 265 (454) -+. .+...++..+...-.......-.+.|..++. ... ...++ ....++......+.-+......+. ..+.++. T Consensus 230 ei~~~v~~l~Da~~~~~~~~~~~~e~~a~p~r~i~G~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 309 (504) T protein:vir:99 230 RITRPVMSLQQRALKGCIRMDGHADVYSFPQLILLGADAKNFRNKDGSMKPAWQIALARVFALPDDEDEPDAARARADVK 309 (504) T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhccCCccccccccccccchhhhhhhhhhcCCCccccccccCccceee Confidence 543 2333333333222222222222233443332 111 11111 122233333333221111111111 1235555 Q ss_pred eccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHH----HHHHHHHHHh------ Q lcl|Aclame:pro 266 PTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLI----ESIELLLDEA------ 335 (454) Q Consensus 266 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~----~~ie~~l~~~------ 335 (454) ++....-+ .|++.++....+|+.+=++|++.+|.....|-++.++..... ..+.-.+ ..+...+.+. T Consensus 310 q~~~~~l~-~~~~~l~~~i~~~a~~t~~P~~~lG~~~~~n~sSa~Ai~~~~--~~L~~ka~~k~~~f~~~l~~~~rla~~ 386 (504) T protein:vir:99 310 QFPASSPQ-PHIEMLEQIAMMFSGETSIPVESLGFSNRANPTSADAYIASR--EDLIAEAEGATDDWSPAFRRSMIRALA 386 (504) T ss_pred ecCCCChH-HHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 55443222 488899999999999999999999976554545544443222 2222222 2222223221 Q ss_pred hc------CcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcC--H-HHHHHHhcCCCCCCc--cccccc-cccccccc Q lcl|Aclame:pro 336 LE------TGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLT--P-NEARKRENLPPLAGG--DALYLQ-QQNYSLEA 403 (454) Q Consensus 336 l~------~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T--~-NE~R~~~g~~p~~~~--d~~~~~-~~~~~~~~ 403 (454) +. +.....+++.+.+....+..+.++++.+++++|... . .-+++++|+.+.+-. ....-. .....++. T Consensus 387 ~~~~~~~~~~~~~~~~v~w~d~~~~s~a~~aDa~~Kl~~ag~~l~~~~~~l~~~lg~~~~ei~r~~~e~~~~~~~~~~~~ 466 (504) T protein:vir:99 387 IKNGLDRIPPEWKTIDSKFRSPLYLSKAAQADAGAKMLGAGPEWLKETEVGLELLGLTPQQAKRALAERRRASSVSIIEA 466 (504) T ss_pred HhcCCCccccccccceeEecCCCccCHHHHHHHHHHHHhhccccccchHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHH Confidence 11 112234556677777888899999999999998632 2 335677888753210 000000 00000111 Q ss_pred cccccccccCC-CccCcccCCCCCCcccCcccccccccccH Q lcl|Aclame:pro 404 LSRRDAREDPF-ASSGKTASVPQAVAASDGNKAITETEHDA 443 (454) Q Consensus 404 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 443 (454) +...+...... ........++..++.+.. .....++. T Consensus 467 l~~~~~~~~~~~~~~~~~~~e~a~~~~~~~---~~~p~~~~ 504 (504) T protein:vir:99 467 LNRRQQEAATAGEDQDQGAGEPPANEPPAA---LGRPTLVG 504 (504) T ss_pred HhcccCCCCCCCCCCCcCCCCCCCCCCCcc---CCCcccCC Confidence 11100000000 000000000000010000 11111111 No 157 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=99.05 E-value=9.9e-10 Score=69.95 Aligned_cols=429 Identities=10% Similarity=0.072 Sum_probs=193.6 Q ss_pred Cc-------------------chhhhhccc-cccccccCcccchhh-hhhhhhhccccccCC----ccccHHHHHhhHHH Q lcl|Aclame:pro 1 MW-------------------NLLRRTRKN-QKSGRDVREAGWTSL-FQAVAEPFAGAWQQG----VKADPEAVLSFHAV 55 (454) Q Consensus 1 m~-------------------n~f~r~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v 55 (454) |- ..|+-.... ...+..+......++ ..+....+.+....+ +....+.++.+|.| T Consensus 1 ~~~~~~w~~~de~~~~~~~~~~~~~~~~p~~~dG~s~i~~~~~~~~~~~~~~~~~~gg~~~n~~eLI~~YR~ma~~~pEV 80 (533) T protein:vir:58 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) T ss_pred CCCcchhhhhhHHHHHHHhhchhhcccCccCCCCCccccCCCCcchhhhhhhhhhhccccccHHHHHHHHHHhhccCcch Confidence 22 222211100 111111111111110 011112222222111 22223344578999 Q ss_pred HHHHHHHHHhhccc-----ceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEee-CCC Q lcl|Aclame:pro 56 FACISLISQDIAKM-----RLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIR-NAR 129 (454) Q Consensus 56 ~~~i~~ia~~va~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r-~~~ 129 (454) ..||+.|.+.+.-+ |..+...+. .-...... .++. .+++..=-+.++..|++.|..|..++- +.+ T Consensus 81 d~AideIvneaiv~d~~~~pV~v~l~~~-e~s~~iK~----kI~~----lldf~~~~~~~fR~WYVDGriy~Hkiik~~k 151 (533) T protein:vir:58 81 STVLDIIADECTIPNENGNIVDVVTKDI-ELAKAILS----YLDY----VINIEKNAYPIIRNMIKYGDMFLHILEKGSD 151 (533) T ss_pred hhHHHhhhceeeEecCCCceeEeecccc-cccHHHHH----HHHH----HhcchhhhhHHHHhhhhcceeEEEeccCCcc Confidence 99999998877533 222221110 00011111 1111 223333345566778899999988863 345 Q ss_pred CceeEEEEecCcceEEEECCCCceeeEEeccccc---cccceeEEehhheEEeecC-CCcCcccccchhhhhHhHHHHHH Q lcl|Aclame:pro 130 GQIKELRILDWNRVEPLVADDGEVFYRITPDRNC---GITEAVTVPAREVIHDRFN-CFFHPLIGLPPVYAAGLAATQGH 205 (454) Q Consensus 130 G~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~vih~~~~-~~~~~~~G~s~l~~~~~~i~~~~ 205 (454) +-..+|.+|+|-.++.++.......|+++..... .....+.++.+.|+|+-.. ...++.+++|-|..++..+.... T Consensus 152 ~GI~elr~lDPr~i~~vr~~~t~~eyyvy~~~~~~~~s~~~~~kI~~daI~y~~SGl~d~~~~~iisyLhkAiKp~NQLk 231 (533) T protein:vir:58 152 GTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLR 231 (533) T ss_pred cchhhheecCCeeeEEEEeeccceEEEeecccccccccCccccccchhheeeeeeccccCCCCceehhhhHHHHHHHHHH Confidence 5578999999999998887644444443332211 2223467889999999876 44467788999988877776666 Q ss_pred HHHHHHHHHHhccCCcceeEecCccC----C-HHHHHHHHHHHHHHhcC-cccCCc----------eec----------C Q lcl|Aclame:pro 206 HIQENSTSFFRNGGRPSGVIEIPGSI----T-EENAKKLKSNWDSGYTG-ENAGKT----------AIL----------S 259 (454) Q Consensus 206 ~~~~~~~~~~~ng~~p~~~l~~~~~~----s-~e~~~~~~~~~~~~~~g-~n~g~~----------~vl----------~ 259 (454) -+....-=+--..+.-+-|+.++-+. . .+-...+..++++.+-= .+.|.+ -.+ . T Consensus 232 miEDAlVIYRisRAPeRRvFYIDVGNlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGg 311 (533) T protein:vir:58 232 LMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDR 311 (533) T ss_pred HHHHHHHHHhhcCChhheEEEEeecCCCccCHHHHHHHHHHhcccceEEeccCCeEeeccchhhhhhhHhhhcccccCCC Confidence 55555554443444344455454322 2 22344445555544311 122332 122 2 Q ss_pred CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 260 NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDN-VEALEQQYYSQCLQTLIESIELLLDEALET 338 (454) Q Consensus 260 ~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n-~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~ 338 (454) .|.+++.|.-. . +.-++-.++..+.+.++++||.+-++..+..+.++ +.-....| ...|.-+..++.+.|.+.|+. T Consensus 312 rgTEI~TLpGg-~-lgemeDV~YF~kkLy~ALnVP~sRl~~e~~fgr~~eItRDEiKF-~KFI~rLR~rF~~ll~~qLil 388 (533) T protein:vir:58 312 RAVEIDILQGS-K-VDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKF-NNTIKRIQGFFVEELERMVRM 388 (533) T ss_pred ccceeeecCCC-C-CCcHHHHHHHHHHHHHHhCCCeeecCCCCCCccchhhhHHHHHH-HHHHHHHHHHHHHHHhccccc Confidence 36788888743 3 55667789999999999999999998765544444 22222234 445666777888888887753 Q ss_pred c-----ccceeeecchhhhh-----cCHHHHHHHHHHH---HhC-----CC--cCHHHHH------HHhcCCC---CCCc Q lcl|Aclame:pro 339 G-----ENESTEFDVTTLLR-----MDSERRMKTLGDA---VKN-----TL--LTPNEAR------KRENLPP---LAGG 389 (454) Q Consensus 339 ~-----~~~~~~f~~~~l~~-----~d~~~~~~~~~~~---~~~-----g~--~T~NE~R------~~~g~~p---~~~~ 389 (454) . ..+.+.|..|.-.. .-...+++++..+ +.. .+ +| +|+. +..+..+ -++- T Consensus 389 k~iit~eew~~~f~~Dn~f~ElKe~Eil~~Ri~~l~~~dpyvgk~yi~k~ILr~t-dei~~q~e~ie~E~~~~~~~~~~~ 467 (533) T protein:vir:58 389 NKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIP-YDLKPQEEVAEAAGGGGLFDTGGF 467 (533) T ss_pred ccCcchhheeeeeeccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCC-hhhhHHHHHHHHhhcCCCCCCCCc Confidence 3 33344444333210 0111222222211 111 01 22 2222 1111111 1111 Q ss_pred cccccccccc-----ccccccc------ccccccCCCccCcccCCCCCCcccC--ccccccccccc Q lcl|Aclame:pro 390 DALYLQQQNY-----SLEALSR------RDAREDPFASSGKTASVPQAVAASD--GNKAITETEHD 442 (454) Q Consensus 390 d~~~~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~ 442 (454) +.-..|...- |++.... ...++...++.....+++++..+.+ +++...=.+.+ T Consensus 468 ~~e~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~~~~~~p~~~ 533 (533) T protein:vir:58 468 GEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) T ss_pred ccccCCcccCccccCcccCCCChhhHhcccCCcccccccccccccchhhhhhcCCcccCCCCCCCC Confidence 1111111000 1111000 0000000111111111111111111 11111101111 No 158 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=99.01 E-value=2.2e-09 Score=68.01 Aligned_cols=347 Identities=10% Similarity=0.010 Sum_probs=165.2 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHH---H-HHhhHHHHHHHHHHHHhhcccceEEEec Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPE---A-VLSFHAVFACISLISQDIAKMRLRLMQT 76 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~v~~~i~~ia~~va~~~~~~~~~ 76 (454) +.+.+.+.......... -...+..+--. . . ..+..+..+ . -+...+...+|+.+++.+.=-.|.. T Consensus 5 ~i~~L~~~~~~~~~r~~----~~~~yY~g~~~-~--~-~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl~~~Gf~~--- 73 (409) T protein:vir:94 5 GIGYLRFKLSVHKRRAE----MRYDQYAMKYV-D--R-FKGITIPQALSQQYRSILGWCAKGVDSLADRLVFREFEN--- 73 (409) T ss_pred HHHHHHHHHHHHhHHHH----HHHHHhcccCc-h--h-hcChhhhHHHHHHHhhhcchhHHHHHHhHhhcccCcccC--- Confidence 33333222211111000 00011111000 0 0 000111110 0 1123456667777766543233321 Q ss_pred cccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCc-eee Q lcl|Aclame:pro 77 DAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE-VFY 155 (454) Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~-~~~ 155 (454) .+ ..++.++.. |. .......+..+.+++|.+|+.+..+.+|.+ .+.+++|..+.+++|.... ..+ T Consensus 74 -~d--------~~l~~i~~~-N~---ld~~~~~~~~~aliyG~sf~~v~~~~dg~~-~i~~~sp~~~~~i~D~~~~~~~~ 139 (409) T protein:vir:94 74 -DD--------FTVNEIFEE-NN---PDIFFDSAVLSSLIASCSFTYISKGENDAV-RLQVIEAVNATGIIDPITGLLTE 139 (409) T ss_pred -Cc--------hHHHHHHHh-cC---hhHHHHHHHHHHHHhcceeEEEecCCCCce-EEEEeccceEEEEEecCCCceee Confidence 11 123334332 22 234556778888999999999988888875 6788999999888776321 111 Q ss_pred --EEeccc-ccc--------------------cc--ceeEEehhheEEeecCCCcCcccccchh-hhhHhHHHHHHHHHH Q lcl|Aclame:pro 156 --RITPDR-NCG--------------------IT--EAVTVPAREVIHDRFNCFFHPLIGLPPV-YAAGLAATQGHHIQE 209 (454) Q Consensus 156 --~~~~~~-~~~--------------------~~--~~~~~~~~~vih~~~~~~~~~~~G~s~l-~~~~~~i~~~~~~~~ 209 (454) ++.... ... .. .+..+..--|++|.+....+..+|.|-+ ..+...++..+...- T Consensus 140 a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vPvV~f~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~ 219 (409) T protein:vir:94 140 GYAVLERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGHPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLE 219 (409) T ss_pred eEEEEEecCCCceEEEEEEecCcEEEEEecCceeEeeeCCCCCcceEEeccccccccccCccccchhHHHHHHHHHHHHH Confidence 111100 000 00 0011122235666665556677888855 233333333333333 Q ss_pred HHHHHHhccCCcceeEe-cCccCCHHHHHHHHHHHHHHhcCcccCCceecC-----CCceeeeccccchhhHHHHHHHHH Q lcl|Aclame:pro 210 NSTSFFRNGGRPSGVIE-IPGSITEENAKKLKSNWDSGYTGENAGKTAILS-----NGAKYNPTTFSPVDSQTVEQLKMT 283 (454) Q Consensus 210 ~~~~~~~ng~~p~~~l~-~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~ 283 (454) ......+-.+.|..++. ++.+ .+..+.++..... ++.++ ++.++.++....-+ .|++.++.. T Consensus 220 ~~~~~~e~~a~pqr~i~G~d~d--~~~~~~~~~~~~~---------i~~~~~d~dg~~~~v~q~~~~~l~-~~~~~l~~~ 287 (409) T protein:vir:94 220 RADVTAEFYSFPQKYVTGLSDD--AEPMETWKATVSS---------MLQFTKDEDGDKPTLGQFTQPSMS-PFTEQLRTA 287 (409) T ss_pred HHHHHHHHhcChhheeEecCCC--CcccchhhhhHHH---------hhcCCCCCCCCCceEEecCCCChh-HHHHHHHHH Confidence 33322333344554443 3222 1222333333222 33332 23555555433222 488999999 Q ss_pred HHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHH----HHHHHHHHHh------hcC------cccceeeec Q lcl|Aclame:pro 284 AEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLI----ESIELLLDEA------LET------GENESTEFD 347 (454) Q Consensus 284 ~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~----~~ie~~l~~~------l~~------~~~~~~~f~ 347 (454) ..+++.+=++|++.+|+... |-++.++..... ..+.-.+ ..+...+.+. +.. .....+++. T Consensus 288 ~~~~a~~t~lP~~~lg~~~~-NpsSa~Al~a~~--~~L~~~a~~k~~~fg~~~~~~~rla~~i~~~~~~~~~~~~~~~v~ 364 (409) T protein:vir:94 288 AAGFAGETGLTLDDLGFVSD-NPSSVEAIKASH--ENLRLAGRKAQRSLGAGLLNVAYLAACLRDDAPYLREQFRKTKPK 364 (409) T ss_pred HHHHhhhcCCCHHHhccccC-chhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccceEE Confidence 99999999999999997654 333333332211 1111111 1122222211 111 111234555 Q ss_pred chhhhhcC---HHHHHHHHHHHHhCC--CcCHHHHHHHhcCCCCC Q lcl|Aclame:pro 348 VTTLLRMD---SERRMKTLGDAVKNT--LLTPNEARKRENLPPLA 387 (454) Q Consensus 348 ~~~l~~~d---~~~~~~~~~~~~~~g--~~T~NE~R~~~g~~p~~ 387 (454) +......+ ..+.++.+.|++++| +...+-+++++|+..-+ T Consensus 365 W~p~~~~~~~~~a~~aDa~~Kl~~ag~~~~~~~~~~~~lG~~~~d 409 (409) T protein:vir:94 365 WEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIEGGE 409 (409) T ss_pred eccCCCcchHHHHHHHHHHHHHHHhcccccchhHHHHHcCCCCCC Confidence 55444444 345678899999998 55668899999997655 No 159 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=98.99 E-value=7.6e-10 Score=70.59 Aligned_cols=408 Identities=13% Similarity=0.040 Sum_probs=170.5 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhh-ccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccc- Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEP-FAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDA- 78 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~- 78 (454) +.+.+.+....+.... .-...+..+--.. ..+... ..-....-+...+...+|+.+++.+.--.|.+-.... T Consensus 12 ~i~~L~~~~~~~~~r~----~~~~~Yy~g~~~i~~~~~~~--~~~~~~~~~~~n~~~~ivd~~a~~l~~~Gf~~~~~~~~ 85 (488) T protein:vir:23 12 LRDQLLDAFENKQNEL----KSSKAYYDAERRPDAIGLAV--PLDMRKYLAHVGYPRTYVDAIAERQELEGFRIPSANGE 85 (488) T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHhcccchhhcCccc--chhhhhhhhhcchHHHHHHHHHHhhhccceeccCCccc Confidence 2222211111110000 0000011100000 000000 0000111233456667788777766444454421111 Q ss_pred ---cccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC--------CCceeEEEEecCcceEEEE Q lcl|Aclame:pro 79 ---QGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA--------RGQIKELRILDWNRVEPLV 147 (454) Q Consensus 79 ---~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~--------~G~~~~l~~l~~~~~~~~~ 147 (454) .+.... ....+..++. -| ........+..+++.+|.||+++.+.. .|. ..+.+++|..+.+.+ T Consensus 86 ~~~~~~d~~-~~~~l~~i~~-~N---~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~~~~~~-~~i~~~~p~~~~~~~ 159 (488) T protein:vir:23 86 EPESGGEND-PASELWDWWQ-AN---NLDIEATLGHTDALIYGTAYITISMPDPEVDFDVDPEV-PLIRVEPPTALYAEV 159 (488) T ss_pred ccccccchh-HHHHHHHHHH-hc---ChhHHHHHHHHHHhhcCceEEEEecCCcccccCCCCCc-ceEEEeccceeEEEE Confidence 011111 1112223322 12 345667778899999999998876532 222 246678888888877 Q ss_pred CCC-CceeeEEe--cc-ccccc-------------------------cceeEEehhheEEeecCCCcCcccccchhhh-h Q lcl|Aclame:pro 148 ADD-GEVFYRIT--PD-RNCGI-------------------------TEAVTVPAREVIHDRFNCFFHPLIGLPPVYA-A 197 (454) Q Consensus 148 ~~~-g~~~~~~~--~~-~~~~~-------------------------~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~-~ 197 (454) +.. +...+.+. .. ..... ..+..+..-.|++|++.......+|.|-+.. + T Consensus 160 d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v 239 (488) T protein:vir:23 160 DPRTRKVLYAIRAIYGADGNEIVSATLYLPDTTMTWLRAEGEWEAPTSTPHGLEMVPVIPISNRTRLSDLYGTSEISPEL 239 (488) T ss_pred ecCCCceEEEEEEEEecCCCcEEEEEEEecCcEEEEEecCCceEeccccccCCCCcceEEeccccccCCcCCccchhhhH Confidence 642 22111110 00 00000 0011122223566766555566678876542 2 Q ss_pred HhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHH--HHHHHHHHHhcCcccCCceecCCC--ceeeeccccchh Q lcl|Aclame:pro 198 GLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAK--KLKSNWDSGYTGENAGKTAILSNG--AKYNPTTFSPVD 273 (454) Q Consensus 198 ~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~--~~~~~~~~~~~g~n~g~~~vl~~g--~~~~~l~~~~~d 273 (454) ...++..+...-.......-.+.|..++.- ....+...+ .-...|+.. .++++.+++| .++.++.....+ T Consensus 240 ~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G-~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~g~~~~~~q~~~~~~~ 313 (488) T protein:vir:23 240 RSVTDAAAQILMNMQGTANLMAIPQRLIFG-AKPEELGINAETGQRMFDAY-----MARILAFEGGEGAHAEQFSAAELR 313 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhC-CCcccccccccccchhhhhh-----hhhhccCCCCCCceeEecCCCChH Confidence 233333332222222222223334443321 111111100 001112111 2356667655 456665544333 Q ss_pred hHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cCc---- Q lcl|Aclame:pro 274 SQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEAL----------ETG---- 339 (454) Q Consensus 274 ~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l----------~~~---- 339 (454) .+++.++....+|+..=++|+..+|.... |.++.++....+ ..+.-.+...+..|...| ... T Consensus 314 -~~~~~l~~~i~~~~~~~~~p~~~~g~~~~-n~~Sg~Al~~~~--~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~ 389 (488) T protein:vir:23 314 -NFVDALDALDRKAASYSGLPPQYLSSSSD-NPASAEAIKAAE--SRLVKKVERKNKIFGGAWEQAMRLAYKMVKGGDIP 389 (488) T ss_pred -HHHHHHHHHHHHHhcccCCCHHHhccccC-cchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc Confidence 47888899999999999999999986543 223333332222 222222232222222211 111 Q ss_pred -ccceeeecchhhhhcCHHHHHHHHHHHHhCC--CcCHHHHHHHhcCCCCCC--ccccccccc---cccccccccccccc Q lcl|Aclame:pro 340 -ENESTEFDVTTLLRMDSERRMKTLGDAVKNT--LLTPNEARKRENLPPLAG--GDALYLQQQ---NYSLEALSRRDARE 411 (454) Q Consensus 340 -~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~~g~~p~~~--~d~~~~~~~---~~~~~~~~~~~~~~ 411 (454) ....+++.+.+....+..+.++.+.+++++| +++..-+++++|+.+.+- .....-... ...++........+ T Consensus 390 ~~~~~i~v~f~~~~~~s~~~~ada~~kl~~~g~~~~s~et~~~~l~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (488) T protein:vir:23 390 TEYYRMETVWRDPSTPTYAAKADAAAKLFANGAGLIPRERGWVDMGYTIVEREQMRQWLEQDQKQGLGLIGSLYGASTPE 469 (488) T ss_pred hhhccceEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCc Confidence 1234556666667788888999999999876 688888889998754321 111000000 00011110000000 Q ss_pred cCCCccCcccCCCCCCcccCc Q lcl|Aclame:pro 412 DPFASSGKTASVPQAVAASDG 432 (454) Q Consensus 412 ~~~~~~~~~~~~~~~~~~~d~ 432 (454) ...+... .+....++.+.+ T Consensus 470 -~~~~~~~-~~~~~~~e~~~a 488 (488) T protein:vir:23 470 -GKPGEAP-VGEPPAPEPDAA 488 (488) T ss_pred -ccCCCCC-CCCCCCCCCCCC Confidence 0000000 000000111111 No 160 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=98.98 E-value=1.8e-09 Score=68.53 Aligned_cols=418 Identities=7% Similarity=-0.068 Sum_probs=183.1 Q ss_pred Ccchh-------------hhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MWNLL-------------RRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIA 67 (454) Q Consensus 1 m~n~f-------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va 67 (454) .++|| .+...........+..-...++.+.-..+..............-+..+.....++..++.+- T Consensus 28 ~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~ 107 (511) T protein:vir:93 28 VYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFL 107 (511) T ss_pred cccccchhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccccCcCcccccCcceeecchHHHHHHHHhhhhc Confidence 11111 11100000000000000000010000000000000000000011224566778888888888 Q ss_pred ccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEE Q lcl|Aclame:pro 68 KMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLV 147 (454) Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~ 147 (454) +-|+.+.. ++.. ....+..++.. -........+..+++.+|.+|+++.++.+|.+ .+..++|..+.++. T Consensus 108 g~p~~~~~--~d~~----~~~~l~~~~~~----n~~~~~~~~~~~~~~~~G~ay~~vy~de~~~~-~i~~~~p~~~~~vy 176 (511) T protein:vir:93 108 GNPIQYQD--DDKD----VLEVIEAFNDL----NDVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIY 176 (511) T ss_pred ccCeeecc--CChH----HHHHHHHHHhh----cCHhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEE Confidence 88877632 1111 11223333322 24556777888899999999999988888865 47789999998887 Q ss_pred CCC--CceeeEEec----ccccccc----ceeEEehhheEEeecCCC-------------------------cCcccccc Q lcl|Aclame:pro 148 ADD--GEVFYRITP----DRNCGIT----EAVTVPAREVIHDRFNCF-------------------------FHPLIGLP 192 (454) Q Consensus 148 ~~~--g~~~~~~~~----~~~~~~~----~~~~~~~~~vih~~~~~~-------------------------~~~~~G~s 192 (454) +.. +...+.+.. ....... ....+.++.+.++..... .+...|.| T Consensus 177 dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~g 256 (511) T protein:vir:93 177 DNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKG 256 (511) T ss_pred cCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccccccccccccccCCCccceEEecCCCCCCC Confidence 653 222221110 0000000 001223333333321110 01235788 Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHh-cCccc-CCceecCCCceeeecccc Q lcl|Aclame:pro 193 PVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGY-TGENA-GKTAILSNGAKYNPTTFS 270 (454) Q Consensus 193 ~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~-~g~n~-g~~~vl~~g~~~~~l~~~ 270 (454) -+..+...++..+.+.--..+.+...+.|-.++.-....+.+.....+..-.-.. .+... +...-.+++.++.-++.. T Consensus 257 d~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (511) T protein:vir:93 257 DYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQ 336 (511) T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCcccCchhhcccccccceecccccccccccccCCCCcceeEEeec Confidence 8888888887777666565666666666776665433334333332221111000 00000 011123445566656555 Q ss_pred chhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 271 PVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ-------------QYYSQCLQTLIESIELLLDEALE 337 (454) Q Consensus 271 ~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~-------------~~~~~~i~P~~~~ie~~l~~~l~ 337 (454) .....+....+...+.|+..-++|..-.+... +|- +..+... .++..++.-+++.|...+...-- T Consensus 337 ~~~~~~~~~~~~L~~~I~~~s~~P~~~~~~~~-~n~-Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~ 414 (511) T protein:vir:93 337 YDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS-GTQ-SGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWS 414 (511) T ss_pred CCHHHHHHHHHHHHHHHHHHhCCccccccccc-ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC Confidence 45556677788889999999999976443322 221 1122211 12233333333333333322111 Q ss_pred C---cccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCC Q lcl|Aclame:pro 338 T---GENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPF 414 (454) Q Consensus 338 ~---~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 414 (454) . .....+.+.|..-+..+..+.++.+.++ .|+++...+++++++-+.+. .-+ ..+............. T Consensus 415 ~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~l~~v~d~~--~E~-----~ri~~E~~~~~~~~~~ 485 (511) T protein:vir:93 415 IDANKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPE--LEV-----KKIEEDEKESIKKAQK 485 (511) T ss_pred cccccccccceEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHH--HHH-----HHHHHHHHHHHHHHhh Confidence 0 1112456777777788999999998888 57899877888876533211 111 0011000000000000 Q ss_pred CccCcccCCCCCCcccCccccccccc Q lcl|Aclame:pro 415 ASSGKTASVPQAVAASDGNKAITETE 440 (454) Q Consensus 415 ~~~~~~~~~~~~~~~~d~~~~~~~~~ 440 (454) .......+.....++++++....+++ T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:93 486 GIYKDPRDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred hcccCCCCCCCCCCCCcccccccccC Confidence 00000000001111111111111111 No 161 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=98.96 E-value=6e-09 Score=65.64 Aligned_cols=418 Identities=7% Similarity=-0.052 Sum_probs=184.3 Q ss_pred Ccc--hhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccc Q lcl|Aclame:pro 1 MWN--LLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDA 78 (454) Q Consensus 1 m~n--~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~ 78 (454) +.+ .+.+...........+..-...++.+--..+...........+..-+........++..+..+-+.|+.+-.. T Consensus 39 ~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~-- 116 (511) T protein:vir:10 39 LQNVNEVSKCIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDD-- 116 (511) T ss_pred ccCHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccccCcccccccCcceeecchHHHHHHHHhhhhcccCceeecC-- Confidence 111 0111110000000000000001111000000000000000001111224566778888888888888876321 Q ss_pred cccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCC--ceeeE Q lcl|Aclame:pro 79 QGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDG--EVFYR 156 (454) Q Consensus 79 ~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g--~~~~~ 156 (454) +.. ....+..++.. | ........+..+++.+|.+|.++-.+.+|.+ .+.+++|..+.+..+... ...+. T Consensus 117 d~~----~~~~l~~~~~~-n---~~~~~~~~~~~~~~i~G~ay~~vy~dedg~~-~i~~~~p~~~~~vydd~~~~~~~~~ 187 (511) T protein:vir:10 117 DKD----VLEAIEAFNDL-N---DVESHNRSLGLDLSIYGKAYEIMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAG 187 (511) T ss_pred chH----HHHHHHHHHhh-c---CHHHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEE Confidence 111 11223333333 2 3445667788889999999999888888864 567889999888876532 22111 Q ss_pred Eec----cccccccc----eeEEehhheEEeecCC-------------------------CcCcccccchhhhhHhHHHH Q lcl|Aclame:pro 157 ITP----DRNCGITE----AVTVPAREVIHDRFNC-------------------------FFHPLIGLPPVYAAGLAATQ 203 (454) Q Consensus 157 ~~~----~~~~~~~~----~~~~~~~~vih~~~~~-------------------------~~~~~~G~s~l~~~~~~i~~ 203 (454) +.. ........ ...+.++.+.++.... -.+...|.|-+..+...|+. T Consensus 188 vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~f~nn~~g~gd~e~v~~liDa 267 (511) T protein:vir:10 188 VRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDL 267 (511) T ss_pred EEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcceeEEEecCCCCCCCchhhhHHHHHH Confidence 110 00000000 0112233333221100 00123578888888888877 Q ss_pred HHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhc-Cccc-CCceecCCCceeeeccccchhhHHHHHHH Q lcl|Aclame:pro 204 GHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYT-GENA-GKTAILSNGAKYNPTTFSPVDSQTVEQLK 281 (454) Q Consensus 204 ~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~-g~n~-g~~~vl~~g~~~~~l~~~~~d~~~~e~~~ 281 (454) .+.+.--..+.+...+.|-.++.-....+.+.....++.-.-... +... +...-.++|.++.-++....+..+....+ T Consensus 268 ~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~ 347 (511) T protein:vir:10 268 YDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKD 347 (511) T ss_pred HHHHHHHHHHHHHHhhCceeeeeccccCCchhhccchhccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHH Confidence 776665555666666677776655444444443333221111110 0101 11112344566666665555566777888 Q ss_pred HHHHHHHHHhccchhhhcccccccccCHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhc---Ccccceee Q lcl|Aclame:pro 282 MTAEIVCSVFRVPAYKIGVGQPPSSDNVEAL-------------EQQYYSQCLQTLIESIELLLDEALE---TGENESTE 345 (454) Q Consensus 282 ~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~-------------~~~~~~~~i~P~~~~ie~~l~~~l~---~~~~~~~~ 345 (454) ...+.|+..-++|..-.+... +|- +..+. ...++...+.-+++.|...+...-- ......+. T Consensus 348 ~L~~~I~~~s~~P~~~~~~~~-~n~-Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~ 425 (511) T protein:vir:10 348 RLNSDIHMFTNTPNMKDDNFS-GTQ-SGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVR 425 (511) T ss_pred HHHHHHHHHhCCccccccccc-ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccceee Confidence 899999999999875443222 221 11221 1222233333333333333332211 11123567 Q ss_pred ecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCC Q lcl|Aclame:pro 346 FDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQ 425 (454) Q Consensus 346 f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (454) +.|..-+..|..+.++.+.++. |+++..-+.+++++-. +.+.-+ ..+....................+... T Consensus 426 i~f~~~~p~d~~~~~~~~~kl~--G~iS~et~~~~l~~v~--d~~~E~-----~ri~~E~~~~~~~~~~~~~~~~~~~~~ 496 (511) T protein:vir:10 426 YVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQ--DPELEV-----KKIEEDEKESIKKAQKGIYKDPRDIND 496 (511) T ss_pred EEeCCCCCcCHHHHHHHHHHHh--ccCcHHHHHHhCCCCC--CHHHHH-----HHHHHHHHHHHHHHhhhcccCCCCCCC Confidence 7788888899999999999985 7888877888876532 211110 001100000000000000000001011 Q ss_pred CCcccCccccccccc Q lcl|Aclame:pro 426 AVAASDGNKAITETE 440 (454) Q Consensus 426 ~~~~~d~~~~~~~~~ 440 (454) ..+.++.+....+++ T Consensus 497 ~~~~~~~~~~~~~~~ 511 (511) T protein:vir:10 497 DEQDDDTKDTVDKKE 511 (511) T ss_pred CCCCCcccCcccccC Confidence 111111111111111 No 162 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=98.96 E-value=1e-08 Score=64.41 Aligned_cols=393 Identities=11% Similarity=-0.003 Sum_probs=176.4 Q ss_pred Ccchhhhhccccccccc---------cCcccchhhh----------hhhhhhcccc---------ccCCcccc---HHHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRD---------VREAGWTSLF----------QAVAEPFAGA---------WQQGVKAD---PEAV 49 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~---------~~~~~~~~~~----------~~~~~~~~~~---------~~~~~~~~---~~~~ 49 (454) |||.|++=...+.-+.- ....-...+. .-+...+-+. ........ +..- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~Yy~g~~~i~~r~~~~~~~~~~~~~~~~~k 80 (474) T protein:vir:95 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIIRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVYGNIDYDKPDWR 80 (474) T ss_pred CcceeecCCCCchhhHHHHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcccCchhccccccccccccccccccce Confidence 99999875432211000 0000000000 0000000000 00000000 0011 Q ss_pred HhhHHHHHHHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC Q lcl|Aclame:pro 50 LSFHAVFACISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR 129 (454) Q Consensus 50 ~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~ 129 (454) +.++....+++..++.+.+-|+.+...++ .....+..++. | +.......+..+.+.+|.+|+.+-++.+ T Consensus 81 i~~n~~~~Ivd~~~~~l~g~p~~~~~~d~------~~~~~l~~~~~--n---~~~~~~~e~~~~~~~~G~~~~~v~~d~~ 149 (474) T protein:vir:95 81 ITTNFHQNLVDQKVSYVASKPVTYSCEDE------SVLKIIHDVLD--T---RWDNKLIDILTATSNKGIDWLQVYINEN 149 (474) T ss_pred eccchHHHHHHHHHhhhccCCceeccCch------HHHHHHHHHHh--c---cHHHHHHHHHHHHhhcCcEEEEEEecCC Confidence 23466677888888888888877632111 11223333333 2 2445566678889999999998888888 Q ss_pred CceeEEEEecCcceEEEECCC--CceeeEEeccccccccceeEEehhh-------------------------------- Q lcl|Aclame:pro 130 GQIKELRILDWNRVEPLVADD--GEVFYRITPDRNCGITEAVTVPARE-------------------------------- 175 (454) Q Consensus 130 G~~~~l~~l~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 175 (454) |.+ .+..++|..+.+..+.. +...+.+..+..........+..+. T Consensus 150 ~~~-~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 228 (474) T protein:vir:95 150 GEM-KLFRVPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHIQSHFSNGNWG 228 (474) T ss_pred Cce-EEEEEcccceEEEEcCCCCCceEEEEEEEEEcCeeEEEEEeCCeEEEEEEcCCccccccccCcccccccccccCCC Confidence 875 57788888888877643 2211111100000000011112222 Q ss_pred ---eEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCccc Q lcl|Aclame:pro 176 ---VIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENA 252 (454) Q Consensus 176 ---vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~ 252 (454) +++++ +...|.|-+..+...++..+.+.--..+.+.....|-.++.--.... .+.+.. . ... T Consensus 229 ~iPvv~~~-----nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~---~~~~~~----~---~~~ 293 (474) T protein:vir:95 229 RVPFIAFK-----NNPEEVSDIWMYKSLIDAIDKRLSDAQNMFDESVELIYILKGYEGQD---LEEFMR----G---LKY 293 (474) T ss_pred ccceEeec-----CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCccc---chhhhh----h---hhc Confidence 23332 12357887777777777766665555555666666766554322111 111111 1 123 Q ss_pred CCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH-------------HHHHH Q lcl|Aclame:pro 253 GKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ-------------QYYSQ 319 (454) Q Consensus 253 g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~-------------~~~~~ 319 (454) .+++.++++.++..+........+....+...+.|+..-++|..-.+.. +++- +..+... ..+.. T Consensus 294 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-~~n~-Sg~Alk~~~~~l~~k~~~k~~~~~~ 371 (474) T protein:vir:95 294 YKAINVDGDGGVETIQVEVPVSSTKEYIDLMRAYIMEFGQGVDFQTDKF-GSAP-SGIALKFLYGNLDLKANKLKNKATV 371 (474) T ss_pred cceeeccCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccc-cccc-hHHHHHHHHHHHHHHHHHHHHHHHH Confidence 4566667666666665555556677788999999999999996432211 1111 1122111 11222 Q ss_pred HHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccc Q lcl|Aclame:pro 320 CLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNY 399 (454) Q Consensus 320 ~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~ 399 (454) .+..+++.|...+.. ......+.+.++.-...|..+.++ .+.+.|+++...+.+++++-..+ +.-+ . T Consensus 372 ~l~~~~~li~~~~g~---~~d~~~i~v~f~~~~p~d~~e~a~---~~~~~g~iS~et~i~~l~~v~d~--~~E~-----~ 438 (474) T protein:vir:95 372 AIQELIGFIIDFNNL---KMDVKDIEISFNFNRMMNDAEQSQ---IIAQSQYLSRETLVKSSPLVDDY--KAEL-----E 438 (474) T ss_pred HHHHHHHHHHHHhCC---CcccceeeEEeccCCCcCHHHHHH---HHHhcCCCchHHHHHhCCCCCCH--HHHH-----H Confidence 233333333222211 112234455555555566555555 45567999988888877653221 1111 0 Q ss_pred cccccccccccccCCCccCcccCCCCCCcccCccccccc Q lcl|Aclame:pro 400 SLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITE 438 (454) Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 438 (454) .+...... ...... ....... +...+....+.+.++ T Consensus 439 ri~~E~~~-~~~~~~-~~~~~~~-d~~~~~~~~~~~~~~ 474 (474) T protein:vir:95 439 RIEQEQME-YNKQLP-NLDDGGA-DGAQQQERSNDKESE 474 (474) T ss_pred HHHHHHHH-HHhccc-ccccccC-CCCcCCCCCccCCCC Confidence 01000000 000000 0000000 011111111111111 No 163 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=98.94 E-value=5.2e-09 Score=66.02 Aligned_cols=418 Identities=7% Similarity=-0.056 Sum_probs=183.8 Q ss_pred Ccch-------------hhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MWNL-------------LRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIA 67 (454) Q Consensus 1 m~n~-------------f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va 67 (454) .+.| +.+...........+..-...++.+.-..+...........+..-+........++..+..+- T Consensus 28 ~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~ 107 (511) T protein:vir:96 28 VYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFL 107 (511) T ss_pred ccccchhhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccccCcCcccccCcceeecchHHHHHHHHHhhhc Confidence 1111 111100000000000000000000000000000000000001111224566677888888888 Q ss_pred ccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEE Q lcl|Aclame:pro 68 KMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLV 147 (454) Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~ 147 (454) +.|+.+... ++. ....+..++.. -........+..+++.+|.+|+++-++.+|.+ .+.+++|..+.+.. T Consensus 108 g~p~~~~~~--~~~----~~~~l~~~~~~----n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~-~i~~~~p~~~~~vy 176 (511) T protein:vir:96 108 GNPIQYQDD--DKD----VLEAIEAFNDL----NDVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIY 176 (511) T ss_pred cCCceeecC--chH----HHHHHHHHHhh----cCHHHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEE Confidence 888876321 111 11223333332 24555677788899999999999888888864 57788999999887 Q ss_pred CCCC--ceeeEEec----cccccccc----eeEEehhheEEeecCC-------------------------CcCcccccc Q lcl|Aclame:pro 148 ADDG--EVFYRITP----DRNCGITE----AVTVPAREVIHDRFNC-------------------------FFHPLIGLP 192 (454) Q Consensus 148 ~~~g--~~~~~~~~----~~~~~~~~----~~~~~~~~vih~~~~~-------------------------~~~~~~G~s 192 (454) +... ...+.+.. ........ ...+.++.+.++.... -.+...|.| T Consensus 177 dd~~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~g 256 (511) T protein:vir:96 177 DNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKG 256 (511) T ss_pred cCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCCceeeEEecCCCCCCC Confidence 6532 21111110 00000000 0112233333322110 001236788 Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHh-cCcc-cCCceecCCCceeeecccc Q lcl|Aclame:pro 193 PVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGY-TGEN-AGKTAILSNGAKYNPTTFS 270 (454) Q Consensus 193 ~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~-~g~n-~g~~~vl~~g~~~~~l~~~ 270 (454) -+..+...|+..+.+.--..+.+...+.|-.++.-....+.++.....+.-.-.. .... .+...-.+++.++.-++.. T Consensus 257 d~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (511) T protein:vir:96 257 DYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQ 336 (511) T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCccCCchhhcccccccceecccccccccccccCCCCcceeEEeec Confidence 8888888888777766666666666666776665544444333332222111000 0000 0111123345566555555 Q ss_pred chhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 271 PVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ-------------QYYSQCLQTLIESIELLLDEALE 337 (454) Q Consensus 271 ~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~-------------~~~~~~i~P~~~~ie~~l~~~l~ 337 (454) .....+....+...+.|+..-++|..-.+... +|- +..+... .++...+.-+++.|...+....- T Consensus 337 ~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~-~n~-Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~ 414 (511) T protein:vir:96 337 YDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS-GTQ-SGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWS 414 (511) T ss_pred CCHHHHHHHHHHHHHHHHHHhCCccccccccc-ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC Confidence 45566777888999999999999986543322 121 1222211 12233333333333333332211 Q ss_pred C---cccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCC Q lcl|Aclame:pro 338 T---GENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPF 414 (454) Q Consensus 338 ~---~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 414 (454) . .....+.+.|..-+..|..+.++.+.++ .|+++.-.+.+++++-..+. .-+ ..+............. T Consensus 415 ~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl--~G~iS~et~l~~l~~v~D~~--~E~-----~ri~~E~~~~~~~~~~ 485 (511) T protein:vir:96 415 IDANKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPE--LEV-----KKIEEDEKESIKKAQK 485 (511) T ss_pred cccccccccceEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHH--HHH-----HHHHHHHHHHHHHHhh Confidence 1 1112456777777788999999998887 58899888888876533211 110 0011000000000000 Q ss_pred CccCcccCCCCCCcccCccccccccc Q lcl|Aclame:pro 415 ASSGKTASVPQAVAASDGNKAITETE 440 (454) Q Consensus 415 ~~~~~~~~~~~~~~~~d~~~~~~~~~ 440 (454) .......+.....++++.+....+++ T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:96 486 GIYKDPRDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred ccccCCCCCCCCCCCCcccccccccC Confidence 00001101111111111111111111 No 164 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=98.91 E-value=2.7e-09 Score=67.58 Aligned_cols=392 Identities=12% Similarity=0.017 Sum_probs=176.6 Q ss_pred Ccc-----hhhhhccccccccccCcccchhhhhhhhh-hccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEE Q lcl|Aclame:pro 1 MWN-----LLRRTRKNQKSGRDVREAGWTSLFQAVAE-PFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLM 74 (454) Q Consensus 1 m~n-----~f~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~ 74 (454) |.+ |+.+......... .+..-...+..+--. ...+.......-.......+.+...+|+..++.+-.-|+.+. T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~-~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~~ 79 (456) T protein:vir:79 1 MTASTPAEWLPVLTKRIDDGM-SRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCChhhcCcccChhhchhhhhhhcchHHHHHHHHHhhhccCCeecC Confidence 221 1111100000000 000000011111000 000000000000011112345678899999999888888753 Q ss_pred eccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCc-- Q lcl|Aclame:pro 75 QTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE-- 152 (454) Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~-- 152 (454) . ..++. ....+..++.+ | ....+...+..+++.+|.||+.+-.+.+|.+ .+..++|..+.+.++.... T Consensus 80 ~-~~d~~----~~~~~~~~~~~-n---~~d~~~~~~~~~a~~~G~a~~~~~~~edg~~-~i~~~~p~~~~~i~d~~~~~~ 149 (456) T protein:vir:79 80 G-SADSD----LALRARRIWRD-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWR 149 (456) T ss_pred C-CCCcc----HHHHHHHHHHh-c---ChhHHHHHHHHHHhhcCeeEEEEeeCCCCce-EEEEeccceeEEEEcCCCCCc Confidence 2 11111 11123333333 3 2345677888999999999998888888876 5788899998888764221 Q ss_pred e--eeEEeccccccc---------c----------------------ceeEEehhheEEeecCC---CcCcccccchhhh Q lcl|Aclame:pro 153 V--FYRITPDRNCGI---------T----------------------EAVTVPAREVIHDRFNC---FFHPLIGLPPVYA 196 (454) Q Consensus 153 ~--~~~~~~~~~~~~---------~----------------------~~~~~~~~~vih~~~~~---~~~~~~G~s~l~~ 196 (454) . ..+++....... + .....+..++-|.--.. +.+...|+|-+.. T Consensus 150 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~~~gd~e~ 229 (456) T protein:vir:79 150 IRSAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEP 229 (456) T ss_pred eEEEEEEEEecCCceeEEEEEcCCceEEEEEEEEeeccccceeeeccCCceeecccccCCCCceeEEEecCCCCCchhhh Confidence 1 000100000000 0 00000000111100000 0122357777776 Q ss_pred hHhHHHHHHHHHHHHHHHHhccCCcceeEecCc-c--CCHHHHHHH--HHHHHHHhcCcccCCceecCCCceeeeccccc Q lcl|Aclame:pro 197 AGLAATQGHHIQENSTSFFRNGGRPSGVIEIPG-S--ITEENAKKL--KSNWDSGYTGENAGKTAILSNGAKYNPTTFSP 271 (454) Q Consensus 197 ~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~-~--~s~e~~~~~--~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~ 271 (454) +...++..+...--........+.|..++.... . ..++.-+.+ ...|... .+.++.++++.++.++.... T Consensus 230 v~~liD~~~~~~s~~~~~~~~~a~~~~~~~G~~~~~~~~d~~g~~i~~~~~~~~~-----~~~~~~~~~~~~~~q~~~~~ 304 (456) T protein:vir:79 230 HIDIINRINRAELQLLSTMAIQAFRQRALKSSEHRLPKVDENGNAIDYASIFEAA-----PGALWELPPGVDIWESQTND 304 (456) T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcccccccccccccchhhhhhhh-----ccccccCCCCcceeeecccC Confidence 666665555443333333333333443332211 0 111111111 1122211 23466778888887766443 Q ss_pred hhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------C--cc Q lcl|Aclame:pro 272 VDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALE---------T--GE 340 (454) Q Consensus 272 ~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~---------~--~~ 340 (454) -+ .+.+.++....+|+..=++|+..+|+..+ |. +.++.. +....+.-.+...+..|...|. . .. T Consensus 305 ~~-~~~~~l~~~i~~i~~~t~~p~~~~~~~~~-N~-Sg~Al~--~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~ 379 (456) T protein:vir:79 305 FT-PMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQ-SAEGAH--NIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV 379 (456) T ss_pred hH-HHHHHHHHHHHHHHhhcCCChhHhccccc-Cc-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc Confidence 32 37888999999999999999999986432 22 222222 2222222233333332222110 0 12 Q ss_pred cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCC--C--ccccccccccccccccccccccccCCCc Q lcl|Aclame:pro 341 NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLA--G--GDALYLQQQNYSLEALSRRDAREDPFAS 416 (454) Q Consensus 341 ~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~--~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (454) ...++..+.+....+..+.++++.++++.|+++..-+++++|+.+.+ . .+...-. ... T Consensus 380 ~~~i~v~w~~~~~~s~~~~ada~~kl~~~G~~~~~~~~~~lg~~~~~i~~~e~~r~~~e------------------~~~ 441 (456) T protein:vir:79 380 EDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQ------------------ITL 441 (456) T ss_pred cccceEEeCCCCCcCHHHHHHHHHHHHhcCCChHHHHHhcCCCCHHHHHHHHHHHHHHH------------------HHH Confidence 23455566666778888999999999999999988888888886531 0 1110000 000 Q ss_pred cCcccCCCCCCcccCccc Q lcl|Aclame:pro 417 SGKTASVPQAVAASDGNK 434 (454) Q Consensus 417 ~~~~~~~~~~~~~~d~~~ 434 (454) ..... -.....++.+ T Consensus 442 ~~~~~---~~~~~~~~~~ 456 (456) T protein:vir:79 442 FAGNP---VQRPQEDGSR 456 (456) T ss_pred HhhhH---hhcCCCCCCC Confidence 00000 0000000000 No 165 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=98.88 E-value=9.9e-09 Score=64.47 Aligned_cols=391 Identities=9% Similarity=0.010 Sum_probs=174.3 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhh-hccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAE-PFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) |+..+.+....-.. ...+..+--. ...+... ............+...||+.+++.+.--.|.+- + T Consensus 23 L~~~~~~~~~~~~~--------~~~Yy~G~~~~~~~~~~~--p~~~r~~~~v~nw~~~~Vd~~a~rl~~~Gf~~~----d 88 (474) T protein:vir:81 23 LLAQIENLRWKNLL--------RTSYYENKRTIQYVGTLI--PPQYFNLGLVLGWTGKAVDALARRCNLEGFVWP----D 88 (474) T ss_pred HHHHHHHHhhHHHH--------HHHHhccCCChhhccccc--cHHHHHHHhhcChHHHHHHHHHhhhcccceECC----C Confidence 33322221110000 0000000000 0000000 000011112345667788888876665555431 1 Q ss_pred ccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCce-eEEEEecCcceEEEECCCCce-eeEE Q lcl|Aclame:pro 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQI-KELRILDWNRVEPLVADDGEV-FYRI 157 (454) Q Consensus 80 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~-~~l~~l~~~~~~~~~~~~g~~-~~~~ 157 (454) +.. .+..++.++.. |. .......+..+.+.+|.+|+.+..+.+|.+ ..+.+++|..+.+.+|..... .+.+ T Consensus 89 ~~~---~~~~l~~iw~~-N~---ld~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i~~~sp~~~~~~~D~~~~~~~~al 161 (474) T protein:vir:81 89 GDL---DSLGGTEVVDD-NH---LLSEIDSAIVAAMQHGPAFLINTVGEDDEPEALIHVKDASEATGEWNRRRRGLNNLL 161 (474) T ss_pred CCc---cchHHHHHHHh-cC---hhHHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceEEEEEeCCCCcceeee Confidence 111 11223344332 22 223566778889999999999888777764 467788999998877642211 0000 Q ss_pred --e-cccc--------------------cccc------ceeEEehhheEEeecCCCcCcccccchhh-hhHhHHHHHHHH Q lcl|Aclame:pro 158 --T-PDRN--------------------CGIT------EAVTVPAREVIHDRFNCFFHPLIGLPPVY-AAGLAATQGHHI 207 (454) Q Consensus 158 --~-~~~~--------------------~~~~------~~~~~~~~~vih~~~~~~~~~~~G~s~l~-~~~~~i~~~~~~ 207 (454) . .+.+ ...+ ....+. -.|++|.+.+.....+|.|.+. .+...++..+.. T Consensus 162 ~~~~~~~~g~~~~~~ly~~~~~~~~~~~~~~~~w~~~~~~~~~g-vPvV~~~n~~~~~~~~G~s~i~e~v~~l~da~~r~ 240 (474) T protein:vir:81 162 SIIDKDKEGKVLSLALYLDNETVTAQRDKATLKWQVDRDEHVYG-VPAQVLPYKPAPKRPFGQSRITKPMMGLQDAGVRE 240 (474) T ss_pred EEEEEcCCCcEEEEEEEeCCcEEEEEEcCccceeeeccCCCCCC-cceEEecccccccCcCCccccchhHHHHHHHHHHH Confidence 0 0000 0000 001111 1256666666666678888552 333333333333 Q ss_pred HHHHHHHHhccCCcceeE-ecCcc-CCHHH---HHHHHHHHHHHhc--CcccCCceecCCCceeeeccccchhhHHHHHH Q lcl|Aclame:pro 208 QENSTSFFRNGGRPSGVI-EIPGS-ITEEN---AKKLKSNWDSGYT--GENAGKTAILSNGAKYNPTTFSPVDSQTVEQL 280 (454) Q Consensus 208 ~~~~~~~~~ng~~p~~~l-~~~~~-~s~e~---~~~~~~~~~~~~~--g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~ 280 (454) .-.......-.+.|.-++ ..... ..+++ ...++..+...+. ++..+. .....++++-++....-+ -|++.+ T Consensus 241 ~~~~~~~~e~~a~pqr~i~G~~~~~~~d~d~~~~~~~~~~~~~i~~~~~d~d~~-~~~~~~~~~~q~~~a~l~-~~~~~l 318 (474) T protein:vir:81 241 LARREGHMDVFSYPEFWLLGADESALKNADGTIKSVWEARLGRIKGLPDDADAD-IPQLARADVKQFPAASPD-AHWSDI 318 (474) T ss_pred HHHHHHHHHHhcchhheeecCChhhcccccccccchhhhhHHHHhcCCCccccc-ccccccccccccCCCChh-HHHHHH Confidence 323222333334454443 22211 11111 2233333333331 111111 111134555555543222 388999 Q ss_pred HHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHH--HHHHHHHHHHHH----hh-c---------Cccccee Q lcl|Aclame:pro 281 KMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQ--TLIESIELLLDE----AL-E---------TGENEST 344 (454) Q Consensus 281 ~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~--P~~~~ie~~l~~----~l-~---------~~~~~~~ 344 (454) +....+||..=++|++.+|.....|-++++.........+.+ -....+...+.+ .+ + +.....+ T Consensus 319 ~~~~~~~a~~t~iP~~~lG~~~~~np~SaeAi~a~~~~l~~kae~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~~ 398 (474) T protein:vir:81 319 NGLAKLFAREASLPDTAVAISGLSNPTSAESYDASQYELIAEAEGAVDDFTPALRKAFIRALAMKNKVAIDEIPDEWKSI 398 (474) T ss_pred HHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccchhhccc Confidence 999999999999999999976555555555543333221111 111122222221 11 0 1122345 Q ss_pred eecchhhhhcCHHHHHHHHHHHHhCCC--cCHHHHHHHhcCCCCCCc---cccccccccccccccccccccccCCCccCc Q lcl|Aclame:pro 345 EFDVTTLLRMDSERRMKTLGDAVKNTL--LTPNEARKRENLPPLAGG---DALYLQQQNYSLEALSRRDAREDPFASSGK 419 (454) Q Consensus 345 ~f~~~~l~~~d~~~~~~~~~~~~~~g~--~T~NE~R~~~g~~p~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (454) +..+.+....+..+.++++.+++++|. ....-+++++|+.+.+-. ....-......++.......+. +..+ T Consensus 399 ~v~W~d~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~t~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~----~~aq 474 (474) T protein:vir:81 399 DAKWRDPRYLSKSAQADAGMKQLAAVPWLAETEVGLELIGLTPQQARRAMADKRRVQGRGTLQALIDRSNNG----ATAQ 474 (474) T ss_pred eeEecCCCccCHHHHHHHHHHHHhcccCCCcHHHHHhhcCCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCC----CCCC Confidence 556667777888999999999999874 333446888898753210 0000000111111111100000 0000 No 166 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=98.88 E-value=1.8e-08 Score=63.06 Aligned_cols=345 Identities=10% Similarity=0.020 Sum_probs=164.4 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHH----HHHhhHHHHHHHHHHHHhhcccceEEEec Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPE----AVLSFHAVFACISLISQDIAKMRLRLMQT 76 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~i~~ia~~va~~~~~~~~~ 76 (454) +.+.+.+.......... -...+..+--. . . .-+..+..+ .-+...+...+|+.+++.+.=-.|.. T Consensus 5 ~i~~L~~~~~~~~~r~~----~~~~yY~g~~~-~--~-~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl~~~Gf~~--- 73 (409) T protein:vir:16 5 GIGYLRFKLSVHKRRAE----MRYEQYAMKHV-D--R-FKGITIPQALSQQYRSILGWCAKGVDSLADRLVFREFEN--- 73 (409) T ss_pred HHHHHHHHHHHHhHHHH----HHHHHHhccCc-h--h-hcchhhhHHHHHHHhhhcChhHHHHHHhHhhcccccccC--- Confidence 23333222111110000 00011110000 0 0 000111110 01123455667777666543333321 Q ss_pred cccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCc-e-- Q lcl|Aclame:pro 77 DAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE-V-- 153 (454) Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~-~-- 153 (454) .+ ..++.++.. | +.......+..+.+++|.+|+.+..+.+|.+ .+.+++|..+.+.+|.... . T Consensus 74 -~d--------~~l~~i~~~-N---~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~-~i~~~sP~~~~~i~D~~~~~~~~ 139 (409) T protein:vir:16 74 -DD--------FTVNEIFEE-N---NPDIFFDSTVLSALIASCSFTYISKGENDAV-RLQVIEATNATGIIDPITGLLTE 139 (409) T ss_pred -cc--------hHHHHHHHh-c---ChhHHHHHHHHHHHHhCceeEEEecCCCCce-EEEEEcccceEEEeeccccccee Confidence 11 123344332 2 2334566778889999999999988888875 6788899888887765211 1 Q ss_pred eeEEeccc-cc--------------------ccc--ceeEEehhheEEeecCCCcCcccccchh----hhhHhHHHHHHH Q lcl|Aclame:pro 154 FYRITPDR-NC--------------------GIT--EAVTVPAREVIHDRFNCFFHPLIGLPPV----YAAGLAATQGHH 206 (454) Q Consensus 154 ~~~~~~~~-~~--------------------~~~--~~~~~~~~~vih~~~~~~~~~~~G~s~l----~~~~~~i~~~~~ 206 (454) .+.+.... .. ... .+..+..-.+++|.+.......+|.|-+ ..+.+.+..... T Consensus 140 a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~~~~~~G~seI~~~v~~l~da~~r~~~ 219 (409) T protein:vir:16 140 GYAVLERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGNPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLE 219 (409) T ss_pred eeEEEEecCCCceEEEEEEecCcEEEEEecCccccceecCCCCcceEEecccccccccCCccccchhHHHHHHHHHHHHH Confidence 11111000 00 000 0111222235677666566677888844 444454444444 Q ss_pred HHHHHHHHHhccCCcceeE-ecCccCCHHHHHHHHHHHHHHhcCcccCCceecC-----CCceeeeccccchhhHHHHHH Q lcl|Aclame:pro 207 IQENSTSFFRNGGRPSGVI-EIPGSITEENAKKLKSNWDSGYTGENAGKTAILS-----NGAKYNPTTFSPVDSQTVEQL 280 (454) Q Consensus 207 ~~~~~~~~~~ng~~p~~~l-~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~ 280 (454) -......|+ +.|..++ .++.+. +..+.++.. .++++.++ ++.++.++....-+ .|++.+ T Consensus 220 ~~~~~~e~~---a~pqr~i~G~d~d~--~~~~~~~~~---------~~~i~~~~~d~~g~~~~v~q~~~~~l~-~~~~~l 284 (409) T protein:vir:16 220 RADVTAEFY---SFPQKYVTGLSDDA--EPMETWKAT---------VSSMLQFTKDEDGDKPTLGQFTQPSMS-PFTEQL 284 (409) T ss_pred HHHHHHHHh---cChhheeEecCCCC--Cccchhhhh---------hhHhhccCCCCCCCCceEEecCCCChh-HHHHHH Confidence 444445554 3454444 332221 122222222 22344443 23556555443322 489999 Q ss_pred HHHHHHHHHHhccchhhhcccccccccCHHHHHHH---HHHHHHHHHHHHHHHHHHH----hh--cC------cccceee Q lcl|Aclame:pro 281 KMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ---YYSQCLQTLIESIELLLDE----AL--ET------GENESTE 345 (454) Q Consensus 281 ~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~---~~~~~i~P~~~~ie~~l~~----~l--~~------~~~~~~~ 345 (454) +....++|.+=++|++.+|+... |-+++++.... +...+ .-....+...+.+ .+ .. .....++ T Consensus 285 ~~~~~~~a~~s~lP~~~lg~~~~-NpsSa~Ai~a~~~~L~~ka-~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~ 362 (409) T protein:vir:16 285 RTAAAGFAGETGLTLDDLGFVSD-NPSSVEAIKASHENLRLAG-RKAQRSLGAGLLNVAYLAACLRDDVPYLREQFSKTK 362 (409) T ss_pred HHHHHHHhhhcCCCHHHcccccC-chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCccchhhccce Confidence 99999999999999999997653 33333333221 11111 1111112222221 11 01 1112344 Q ss_pred ecchhhh---hcCHHHHHHHHHHHHhCCC--cCHHHHHHHhcCCCCC Q lcl|Aclame:pro 346 FDVTTLL---RMDSERRMKTLGDAVKNTL--LTPNEARKRENLPPLA 387 (454) Q Consensus 346 f~~~~l~---~~d~~~~~~~~~~~~~~g~--~T~NE~R~~~g~~p~~ 387 (454) +.+.... ..+..+.++.+.|++++|. ..-+-+++++|+..-+ T Consensus 363 v~W~~~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~v~~~~~g~~~~d 409 (409) T protein:vir:16 363 PKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIKGAE 409 (409) T ss_pred EEecCCCCcchhhHHHHHHHHHHHHhhcccccchhHHHHhccCCCCC Confidence 5555443 3346778899999999973 3346679999997654 No 167 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=98.87 E-value=1.5e-08 Score=63.53 Aligned_cols=418 Identities=8% Similarity=-0.053 Sum_probs=182.8 Q ss_pred Cc----------chhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 1 MW----------NLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMR 70 (454) Q Consensus 1 m~----------n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~ 70 (454) |. +.+.+...........+..-...++.+.-..+..............-+..+.....++..+..+.+-| T Consensus 31 ~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p 110 (512) T protein:vir:97 31 YDGTESDLLQNINEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNP 110 (512) T ss_pred cCchhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccccCcccccccCcceeecchHHHHHHHHhhhhcccC Confidence 11 00111100000000000000000111000000000000000000111224566678888888888888 Q ss_pred eEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCC Q lcl|Aclame:pro 71 LRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADD 150 (454) Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~ 150 (454) +.+-..++ . ....+..++.. | ........+..+++.+|.+|+++.++.+|.+ .+.+++|..+.++.+.. T Consensus 111 ~~~~~~d~--~----~~~~l~~~~~~-n---~~~~~~~~~~~~~~i~G~ay~~vy~ded~~~-~i~~~~p~~~~~iyd~~ 179 (512) T protein:vir:97 111 IQCQDDDK--D----VLEAIEAFNDL-N---DVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNT 179 (512) T ss_pred ceeccCCh--H----HHHHHHHHHhh-c---CHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEEcCC Confidence 77632111 1 11223333332 2 4445667788889999999999988888865 57889999999888753 Q ss_pred C--ceeeEE--ec--ccccccc----ceeEEehhheEEeecCC-------------------------CcCcccccchhh Q lcl|Aclame:pro 151 G--EVFYRI--TP--DRNCGIT----EAVTVPAREVIHDRFNC-------------------------FFHPLIGLPPVY 195 (454) Q Consensus 151 g--~~~~~~--~~--~~~~~~~----~~~~~~~~~vih~~~~~-------------------------~~~~~~G~s~l~ 195 (454) . ...+.+ +. ....... ....+..+.+.++.... -.+...|.|-+. T Consensus 180 ~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~gd~e 259 (512) T protein:vir:97 180 IERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYE 259 (512) T ss_pred CCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcccceEeecCCCCCCCchh Confidence 2 222111 10 0000000 00123333333332110 001235788888 Q ss_pred hhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcC---cccCCceecCCCceeeeccccch Q lcl|Aclame:pro 196 AAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTG---ENAGKTAILSNGAKYNPTTFSPV 272 (454) Q Consensus 196 ~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g---~n~g~~~vl~~g~~~~~l~~~~~ 272 (454) .+...++....+.--..+.+.....|-.++.-....+.+.....+....-.... .+.....-.++|.+++-+..... T Consensus 260 ~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 339 (512) T protein:vir:97 260 KVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYENRDTGIETEGSVDGGYIYKQYD 339 (512) T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccCCchhhhhhhhcccccccccchhhcccccCCCCCcceEEEeecCC Confidence 888888877776666666666667777766554433444433333221111111 11111112345666666665555 Q ss_pred hhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhc-- Q lcl|Aclame:pro 273 DSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ-------------YYSQCLQTLIESIELLLDEALE-- 337 (454) Q Consensus 273 d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~-------------~~~~~i~P~~~~ie~~l~~~l~-- 337 (454) ...+....+...+.|+..-++|..-.+... +|- +.++.... .+...+.-+++.|...+...-- T Consensus 340 ~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~-gn~-Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~~~ 417 (512) T protein:vir:97 340 VQGTEAYKDRLNSDIHMFTNTPNMKDDNFS-GTQ-SGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSID 417 (512) T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCccccc-ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc Confidence 556677788889999999999876544322 221 22222211 1222222222222222221110 Q ss_pred -CcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCc Q lcl|Aclame:pro 338 -TGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFAS 416 (454) Q Consensus 338 -~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (454) ......+.+.|..-+..+..+.++.+.++. |+++..-+.+++++-..+ +.-+ ..+............... T Consensus 418 ~~~d~~~i~~~f~~~~p~~~~e~~~~~~kl~--giiS~et~~~~l~~v~d~--~~E~-----eri~~E~~~~~~~~~~~~ 488 (512) T protein:vir:97 418 ANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDP--ELEV-----KKIEEDEKESIKKAQKGI 488 (512) T ss_pred cccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCH--HHHH-----HHHHHHHHHHHHHHhhcc Confidence 011123566667777888888999888884 789987788887653221 1110 001000000000000000 Q ss_pred cCcccCCCCCCcccCccccccccc Q lcl|Aclame:pro 417 SGKTASVPQAVAASDGNKAITETE 440 (454) Q Consensus 417 ~~~~~~~~~~~~~~d~~~~~~~~~ 440 (454) .....+.....++++.+....+++ T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~ 512 (512) T protein:vir:97 489 YKDPRDINDDEQDDDTKDTVDKKE 512 (512) T ss_pred cCCCCCCCCCCCCCCccccccccC Confidence 000000011111111111111111 No 168 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=98.85 E-value=2.7e-09 Score=67.53 Aligned_cols=393 Identities=11% Similarity=0.010 Sum_probs=182.9 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhh-hccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAE-PFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) +.+.+.+....+... ..-...+..+--. ...+............-..+.+...+|+..++.+-.-|+.+.... + T Consensus 9 ~~~~l~~~~~~~~~r----~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~~~~-d 83 (456) T protein:vir:10 9 WLPVLTKRIDDGMSR----VRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSA-D 83 (456) T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHhcCCCchhcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecCCCC-C Confidence 222221111111000 0000011111000 000000000000111123456778899999999888888763211 1 Q ss_pred ccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCc--ee--- Q lcl|Aclame:pro 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE--VF--- 154 (454) Q Consensus 80 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~--~~--- 154 (454) .. ....+..++.+ | +...+...+..+++.+|.+|+++..+.+|.+ .+..++|..+.++.+.... .. T Consensus 84 ~~----~~~~~~~i~~~-N---~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i 154 (456) T protein:vir:10 84 SD----LALRARRIWRD-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAM 154 (456) T ss_pred cc----hHHHHHHHHHh-c---ChhhHHHHHHHHHhhcCeeEEEEeeCCCCce-EEEEEccceeEEEEcCCCCcceEEEE Confidence 11 11123334332 3 2345567788999999999998888888865 4678899998888775321 10 Q ss_pred eEEec-ccccc-----------------------ccceeEEeh------hheEEeecCC---CcCcccccchhhhhHhHH Q lcl|Aclame:pro 155 YRITP-DRNCG-----------------------ITEAVTVPA------REVIHDRFNC---FFHPLIGLPPVYAAGLAA 201 (454) Q Consensus 155 ~~~~~-~~~~~-----------------------~~~~~~~~~------~~vih~~~~~---~~~~~~G~s~l~~~~~~i 201 (454) .+|.. +.... ......... .+.-|+--.+ +.+...|+|-+......+ T Consensus 155 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g~gd~e~vi~li 234 (456) T protein:vir:10 155 RWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDII 234 (456) T ss_pred EEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCCCchhhhhHHHH Confidence 01100 00000 000000000 0000100000 012236888887777777 Q ss_pred HHHHHHHHHHHHHHhccCCcceeEecCcc---CCHHHHHHH--HHHHHHHhcCcccCCceecCCCceeeeccccchhhHH Q lcl|Aclame:pro 202 TQGHHIQENSTSFFRNGGRPSGVIEIPGS---ITEENAKKL--KSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQT 276 (454) Q Consensus 202 ~~~~~~~~~~~~~~~ng~~p~~~l~~~~~---~s~e~~~~~--~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~ 276 (454) +..+.+.--........+.|..++..... ..++.-..+ ...|+.. .+.++.++++.++..+....-+ .+ T Consensus 235 Da~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~q~~~~~~~-~~ 308 (456) T protein:vir:10 235 NRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAA-----PGALWELPPGVDIWESQANDFT-PM 308 (456) T ss_pred HHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhhh-----ccccccCCCCcceEEecccChh-HH Confidence 66665554333333334444444432110 111111111 1122221 3456778889888777643322 48 Q ss_pred HHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------C--cccceee Q lcl|Aclame:pro 277 VEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALE---------T--GENESTE 345 (454) Q Consensus 277 ~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~---------~--~~~~~~~ 345 (454) ++.++....+|++.=++|+..+|.... |- +.++. .+....+.-.+...+..|..-|. . .....++ T Consensus 309 ~~~l~~~i~~~~~~s~~p~~~~~~~~~-N~-Sg~Ai--~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~~ 384 (456) T protein:vir:10 309 LSAIKEHIRQLSSATKTPLPMLMPDSA-NQ-SAEGA--HNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVD 384 (456) T ss_pred HHHHHHHHHHHHhccCCChHHhccccc-Ch-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccee Confidence 888999999999999999999986432 22 22222 22222333333333333332110 1 1223456 Q ss_pred ecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCC Q lcl|Aclame:pro 346 FDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQ 425 (454) Q Consensus 346 f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (454) +.+.+....+..+.++++.++.+.|+++..-+++++|+.+.+-. .. .++.... .....++ . ..+ T Consensus 385 v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~i~---~~-----e~er~~~---e~~~~~~--~---~~~ 448 (456) T protein:vir:10 385 VSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIK---QD-----DLDRARE---QITLFAG--N---PVQ 448 (456) T ss_pred EEecCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHHHH---HH-----HHHHHHH---HHHHHhh--h---hhh Confidence 66777778888999999999999999988888888888653100 00 0000000 0000000 0 000 Q ss_pred CCcccCccc Q lcl|Aclame:pro 426 AVAASDGNK 434 (454) Q Consensus 426 ~~~~~d~~~ 434 (454) .+ .+++.+ T Consensus 449 ~~-~~~~~~ 456 (456) T protein:vir:10 449 RP-QEDGSR 456 (456) T ss_pred cC-CCCCCC Confidence 00 111111 No 169 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=98.85 E-value=2.7e-09 Score=67.53 Aligned_cols=393 Identities=11% Similarity=0.010 Sum_probs=182.9 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhh-hccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAE-PFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) +.+.+.+....+... ..-...+..+--. ...+............-..+.+...+|+..++.+-.-|+.+.... + T Consensus 9 ~~~~l~~~~~~~~~r----~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~~~~-d 83 (456) T protein:vir:10 9 WLPVLTKRIDDGMSR----VRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSA-D 83 (456) T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHhcCCCchhcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecCCCC-C Confidence 222221111111000 0000011111000 000000000000111123456778899999999888888763211 1 Q ss_pred ccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCc--ee--- Q lcl|Aclame:pro 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE--VF--- 154 (454) Q Consensus 80 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~--~~--- 154 (454) .. ....+..++.+ | +...+...+..+++.+|.+|+++..+.+|.+ .+..++|..+.++.+.... .. T Consensus 84 ~~----~~~~~~~i~~~-N---~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i 154 (456) T protein:vir:10 84 SD----LALRARRIWRD-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAM 154 (456) T ss_pred cc----hHHHHHHHHHh-c---ChhhHHHHHHHHHhhcCeeEEEEeeCCCCce-EEEEEccceeEEEEcCCCCcceEEEE Confidence 11 11123334332 3 2345567788999999999998888888865 4678899998888775321 10 Q ss_pred eEEec-ccccc-----------------------ccceeEEeh------hheEEeecCC---CcCcccccchhhhhHhHH Q lcl|Aclame:pro 155 YRITP-DRNCG-----------------------ITEAVTVPA------REVIHDRFNC---FFHPLIGLPPVYAAGLAA 201 (454) Q Consensus 155 ~~~~~-~~~~~-----------------------~~~~~~~~~------~~vih~~~~~---~~~~~~G~s~l~~~~~~i 201 (454) .+|.. +.... ......... .+.-|+--.+ +.+...|+|-+......+ T Consensus 155 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g~gd~e~vi~li 234 (456) T protein:vir:10 155 RWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDII 234 (456) T ss_pred EEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCCCchhhhhHHHH Confidence 01100 00000 000000000 0000100000 012236888887777777 Q ss_pred HHHHHHHHHHHHHHhccCCcceeEecCcc---CCHHHHHHH--HHHHHHHhcCcccCCceecCCCceeeeccccchhhHH Q lcl|Aclame:pro 202 TQGHHIQENSTSFFRNGGRPSGVIEIPGS---ITEENAKKL--KSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQT 276 (454) Q Consensus 202 ~~~~~~~~~~~~~~~ng~~p~~~l~~~~~---~s~e~~~~~--~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~ 276 (454) +..+.+.--........+.|..++..... ..++.-..+ ...|+.. .+.++.++++.++..+....-+ .+ T Consensus 235 Da~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~q~~~~~~~-~~ 308 (456) T protein:vir:10 235 NRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAA-----PGALWELPPGVDIWESQANDFT-PM 308 (456) T ss_pred HHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhhh-----ccccccCCCCcceEEecccChh-HH Confidence 66665554333333334444444432110 111111111 1122221 3456778889888777643322 48 Q ss_pred HHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------C--cccceee Q lcl|Aclame:pro 277 VEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALE---------T--GENESTE 345 (454) Q Consensus 277 ~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~---------~--~~~~~~~ 345 (454) ++.++....+|++.=++|+..+|.... |- +.++. .+....+.-.+...+..|..-|. . .....++ T Consensus 309 ~~~l~~~i~~~~~~s~~p~~~~~~~~~-N~-Sg~Ai--~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~~ 384 (456) T protein:vir:10 309 LSAIKEHIRQLSSATKTPLPMLMPDSA-NQ-SAEGA--HNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVD 384 (456) T ss_pred HHHHHHHHHHHHhccCCChHHhccccc-Ch-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccee Confidence 888999999999999999999986432 22 22222 22222333333333333332110 1 1223456 Q ss_pred ecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCC Q lcl|Aclame:pro 346 FDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQ 425 (454) Q Consensus 346 f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (454) +.+.+....+..+.++++.++.+.|+++..-+++++|+.+.+-. .. .++.... .....++ . ..+ T Consensus 385 v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~i~---~~-----e~er~~~---e~~~~~~--~---~~~ 448 (456) T protein:vir:10 385 VSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIK---QD-----DLDRARE---QITLFAG--N---PVQ 448 (456) T ss_pred EEecCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHHHH---HH-----HHHHHHH---HHHHHhh--h---hhh Confidence 66777778888999999999999999988888888888653100 00 0000000 0000000 0 000 Q ss_pred CCcccCccc Q lcl|Aclame:pro 426 AVAASDGNK 434 (454) Q Consensus 426 ~~~~~d~~~ 434 (454) .+ .+++.+ T Consensus 449 ~~-~~~~~~ 456 (456) T protein:vir:10 449 RP-QEDGSR 456 (456) T ss_pred cC-CCCCCC Confidence 00 111111 No 170 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=98.84 E-value=2e-08 Score=62.84 Aligned_cols=403 Identities=13% Similarity=0.054 Sum_probs=174.7 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccH---HHHHhhHHHHHHHHHHHHhhcccceEEEecc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADP---EAVLSFHAVFACISLISQDIAKMRLRLMQTD 77 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~ 77 (454) |.+.+.+....-.. ...+..+--.. .. .+..+.. ..-....+...+|+..++.+--.++.+ . T Consensus 11 L~~~~~~~~~r~~~--------l~~Yy~G~~~i--~~--~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~---~ 75 (480) T protein:vir:78 11 LQGLLARDLPNLLE--------AEAYRNGTRRL--KT--IGIGAPPELAYLDVQPGWVATYLRTLSDRLDIEGFRI---S 75 (480) T ss_pred HHHHHHHHHHHHHH--------HHHHHhccccc--cc--cccccchhHhhhhhhcchHHHHHHHHHhhhccCceec---C Confidence 33333221110000 00111100000 00 0000110 111223456677777777664444432 1 Q ss_pred ccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeC------CCCceeEEEEecCcceEEEECCC- Q lcl|Aclame:pro 78 AQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRN------ARGQIKELRILDWNRVEPLVADD- 150 (454) Q Consensus 78 ~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~------~~G~~~~l~~l~~~~~~~~~~~~- 150 (454) ++.. ....+..++.. | ........+..+++.+|.||+.+.+. .+|.+ .+.+++|..+.+.++.. T Consensus 76 ~d~~----~~~~l~~i~~~-N---~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~-~i~~~~p~~~~~~~D~~~ 146 (480) T protein:vir:78 76 EDSE----GLEELWNWWQA-N---DLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIP-LIRVESPLYMYAELDPRN 146 (480) T ss_pred CCch----hHHHHHHHHHh-c---CHHHHHHHHHHHHhhcCceEEEEecCccccCCCCCee-EEEEEcccceEEEEcCCC Confidence 1111 12223333332 2 33456777889999999999887653 34443 46788999999888742 Q ss_pred -CceeeEEec----cc----------------------cc-----cccc--eeEEehhheEEeecCCCcCcccccchhhh Q lcl|Aclame:pro 151 -GEVFYRITP----DR----------------------NC-----GITE--AVTVPAREVIHDRFNCFFHPLIGLPPVYA 196 (454) Q Consensus 151 -g~~~~~~~~----~~----------------------~~-----~~~~--~~~~~~~~vih~~~~~~~~~~~G~s~l~~ 196 (454) +...+.+.. +. .. ...+ +..+..-.|++|.+....+..+|.|-+.. T Consensus 147 ~~~~~~~i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~s~i~~ 226 (480) T protein:vir:78 147 TRRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISP 226 (480) T ss_pred ccceEEEEEEEEeecCCCceEEEEEEeCCeEEEEEecCCCccccccccccccCCCCCcceEEeecccccCCccCcccchh Confidence 221111100 00 00 0000 01123334567776656666788886653 Q ss_pred -hHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecC-CCceeeeccccchhh Q lcl|Aclame:pro 197 -AGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILS-NGAKYNPTTFSPVDS 274 (454) Q Consensus 197 -~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~d~ 274 (454) +...++..+...--......-.+.|..++.- .+..+...+.....|... .+.++.++ +++++.++.....+ T Consensus 227 ~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~- 299 (480) T protein:vir:78 227 ELRKVTDAASRTLMNLQSASQILGTPLRVISG-VTTDELTNDGENTTLDIY-----YGRILTLASEAAKISEFKAAELR- 299 (480) T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhhhhhc-CCccccccccccchhhhh-----hhhhccCCCCCceEEecCccCHH- Confidence 4444444443333333333434456555432 111111111111112211 12344443 45677666654333 Q ss_pred HHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cC----cc Q lcl|Aclame:pro 275 QTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEAL----------ET----GE 340 (454) Q Consensus 275 ~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l----------~~----~~ 340 (454) .+++..+....+|+..=++|+..+|.... |.++.++....+ ..+.-.+...+..|...| .. .. T Consensus 300 ~~~~~l~~~i~~~~~~~~~p~~~~g~~~~-n~~Sg~Alk~~~--~~l~~ka~~~~~~f~~~l~~~~~l~~~~~g~~~~~~ 376 (480) T protein:vir:78 300 NFAEEMEVFRKEAASITGLPPQYLSSSSE-NPASAEAIIATD--SRIVKMAERKGRIFGGAWERAMRIAMQIMGREVTEE 376 (480) T ss_pred HHHHHHHHHHHHHhcccCCChHHhccccC-cchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc Confidence 37788889999999999999999987543 323333333222 222223333222222111 11 11 Q ss_pred cceeeecchhhhhcCHHHHHHHHHHHHhCC--CcCHHHHHHHhcCCCCCCc--ccccccccccccccc---ccccccccC Q lcl|Aclame:pro 341 NESTEFDVTTLLRMDSERRMKTLGDAVKNT--LLTPNEARKRENLPPLAGG--DALYLQQQNYSLEAL---SRRDAREDP 413 (454) Q Consensus 341 ~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~~g~~p~~~~--d~~~~~~~~~~~~~~---~~~~~~~~~ 413 (454) ...+.+.+.+....+..+.++.+.+++++| +++..-+++++|+.+.+-. ....-...-..++.. ...+....+ T Consensus 377 ~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 456 (480) T protein:vir:78 377 YTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQADATP 456 (480) T ss_pred ceeeeEEecCCCCCCHHHHHHHHHHHHHhccccCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhccccccCCCCC Confidence 134556666666778888999999998876 5677667888888753211 100000000000100 111111111 Q ss_pred CCccCcccCCCCCCcccCcccccccccccH Q lcl|Aclame:pro 414 FASSGKTASVPQAVAASDGNKAITETEHDA 443 (454) Q Consensus 414 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 443 (454) .+..+....+.++. ..+ ..+. ++. T Consensus 457 ~~~~~~~~~~~~~~--~~~---~~~~-~~~ 480 (480) T protein:vir:78 457 KPTVTETKTETQTS--PSG---FNRT-KTR 480 (480) T ss_pred CCCCCCCCCccccc--cCC---CCcc-cCC Confidence 11111110000000 000 1111 111 No 171 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=98.83 E-value=1.9e-08 Score=62.96 Aligned_cols=418 Identities=7% Similarity=-0.062 Sum_probs=178.8 Q ss_pred Ccchh-------------hhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MWNLL-------------RRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIA 67 (454) Q Consensus 1 m~n~f-------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va 67 (454) .++|| .+...........+..-....+.+.-..+..............-+........++..+..+- T Consensus 28 ~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~ 107 (511) T protein:vir:78 28 VYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFL 107 (511) T ss_pred cccccchhhhhhcCHHHHHHHHHHHHHhhhHHHHHHHHHhhccCccccccCcccccccCcceeecchHHHHHHHHhhhhc Confidence 11111 11000000000000000000000000000000000000000111224566677888888888 Q ss_pred ccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEE Q lcl|Aclame:pro 68 KMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLV 147 (454) Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~ 147 (454) +.|+.+.. .++. ....+..++.. | ....+...+..+++.+|.+|+++-++.+|.+ .+.+++|..+.+.. T Consensus 108 g~p~~~~~--~d~~----~~~~l~~~~~~-n---~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~-~i~~~~p~~~~~v~ 176 (511) T protein:vir:78 108 GNPIQYQD--DDKD----VLEAIEAFNDL-N---DVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFIIY 176 (511) T ss_pred ccCceeec--CchH----HHHHHHHHHhh-c---ChhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEcccceEEEE Confidence 88877632 1111 11223333333 2 3445677788899999999999888888865 57788999998888 Q ss_pred CCCC--ceeeE---Ee-cccccccc----ceeEEehhheEEeecCCC-------------------------cCcccccc Q lcl|Aclame:pro 148 ADDG--EVFYR---IT-PDRNCGIT----EAVTVPAREVIHDRFNCF-------------------------FHPLIGLP 192 (454) Q Consensus 148 ~~~g--~~~~~---~~-~~~~~~~~----~~~~~~~~~vih~~~~~~-------------------------~~~~~G~s 192 (454) +... ...+. |. ........ ....+.++.+.++..... .+...|.| T Consensus 177 dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~g 256 (511) T protein:vir:78 177 DNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKG 256 (511) T ss_pred cCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCC Confidence 7532 22221 11 00000000 011233444444322110 01235778 Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHh-cCccc-CCceecCCCceeeecccc Q lcl|Aclame:pro 193 PVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGY-TGENA-GKTAILSNGAKYNPTTFS 270 (454) Q Consensus 193 ~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~-~g~n~-g~~~vl~~g~~~~~l~~~ 270 (454) -+..+...++..+.+.--..+.+...+.|-.++......+.+........-.-.. .+... +.-.-.+++.++.-++.. T Consensus 257 d~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (511) T protein:vir:78 257 DYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQ 336 (511) T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecCccCCchhhcccccccceeccccceeccccccCCCCcceeEEeec Confidence 7877777777666655555555555566666665544344333333222110000 00000 000012234444445444 Q ss_pred chhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 271 PVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ-------------QYYSQCLQTLIESIELLLDEALE 337 (454) Q Consensus 271 ~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~-------------~~~~~~i~P~~~~ie~~l~~~l~ 337 (454) .....+....+...+.|+..-++|....+... +|- +..+... .++...+.-+++.|...+...-- T Consensus 337 ~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~-~n~-Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~ 414 (511) T protein:vir:78 337 YDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS-GTQ-SGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRS 414 (511) T ss_pred CCHHHHHHHHHHHHHHHHHHhCCccccccccc-ccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 44556677788899999999999976544322 121 1122211 12222333333333333222110 Q ss_pred ---CcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCC Q lcl|Aclame:pro 338 ---TGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPF 414 (454) Q Consensus 338 ---~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 414 (454) ......+.+.|..-+..+..+.++.+.++. |+++..-+.+++++- ++.+.-+ ..+............. T Consensus 415 ~~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~--G~iS~et~l~~l~~v--~d~~~El-----~ri~~E~~~~~~~~~~ 485 (511) T protein:vir:78 415 IDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFF--QDPELEV-----KKIEEDEKESIKKAQK 485 (511) T ss_pred CccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCC--CCHHHHH-----HHHHHHHHHHHHHHhh Confidence 111124567777778889999999999885 788887787776542 2211111 0111100000000000 Q ss_pred CccCcccCCCCCCcccCccccccccc Q lcl|Aclame:pro 415 ASSGKTASVPQAVAASDGNKAITETE 440 (454) Q Consensus 415 ~~~~~~~~~~~~~~~~d~~~~~~~~~ 440 (454) .......+.....+.++.+....+++ T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~e~~ 511 (511) T protein:vir:78 486 GIYKDPRDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred ccccCCCCCCCCCCCCCccCcccccC Confidence 00000000001111111111111111 No 172 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=98.83 E-value=1.9e-08 Score=62.96 Aligned_cols=418 Identities=7% Similarity=-0.062 Sum_probs=178.8 Q ss_pred Ccchh-------------hhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MWNLL-------------RRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIA 67 (454) Q Consensus 1 m~n~f-------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va 67 (454) .++|| .+...........+..-....+.+.-..+..............-+........++..+..+- T Consensus 28 ~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~ 107 (511) T protein:vir:96 28 VYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFL 107 (511) T ss_pred cccccchhhhhhcCHHHHHHHHHHHHHhhhHHHHHHHHHhhccCccccccCcccccccCcceeecchHHHHHHHHhhhhc Confidence 11111 11000000000000000000000000000000000000000111224566677888888888 Q ss_pred ccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEE Q lcl|Aclame:pro 68 KMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLV 147 (454) Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~ 147 (454) +.|+.+.. .++. ....+..++.. | ....+...+..+++.+|.+|+++-++.+|.+ .+.+++|..+.+.. T Consensus 108 g~p~~~~~--~d~~----~~~~l~~~~~~-n---~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~-~i~~~~p~~~~~v~ 176 (511) T protein:vir:96 108 GNPIQYQD--DDKD----VLEAIEAFNDL-N---DVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFIIY 176 (511) T ss_pred ccCceeec--CchH----HHHHHHHHHhh-c---ChhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEcccceEEEE Confidence 88877632 1111 11223333333 2 3445677788899999999999888888865 57788999998888 Q ss_pred CCCC--ceeeE---Ee-cccccccc----ceeEEehhheEEeecCCC-------------------------cCcccccc Q lcl|Aclame:pro 148 ADDG--EVFYR---IT-PDRNCGIT----EAVTVPAREVIHDRFNCF-------------------------FHPLIGLP 192 (454) Q Consensus 148 ~~~g--~~~~~---~~-~~~~~~~~----~~~~~~~~~vih~~~~~~-------------------------~~~~~G~s 192 (454) +... ...+. |. ........ ....+.++.+.++..... .+...|.| T Consensus 177 dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~g 256 (511) T protein:vir:96 177 DNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKG 256 (511) T ss_pred cCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCC Confidence 7532 22221 11 00000000 011233444444322110 01235778 Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHh-cCccc-CCceecCCCceeeecccc Q lcl|Aclame:pro 193 PVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGY-TGENA-GKTAILSNGAKYNPTTFS 270 (454) Q Consensus 193 ~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~-~g~n~-g~~~vl~~g~~~~~l~~~ 270 (454) -+..+...++..+.+.--..+.+...+.|-.++......+.+........-.-.. .+... +.-.-.+++.++.-++.. T Consensus 257 d~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (511) T protein:vir:96 257 DYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQ 336 (511) T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecCccCCchhhcccccccceeccccceeccccccCCCCcceeEEeec Confidence 7877777777666655555555555566666665544344333333222110000 00000 000012234444445444 Q ss_pred chhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 271 PVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ-------------QYYSQCLQTLIESIELLLDEALE 337 (454) Q Consensus 271 ~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~-------------~~~~~~i~P~~~~ie~~l~~~l~ 337 (454) .....+....+...+.|+..-++|....+... +|- +..+... .++...+.-+++.|...+...-- T Consensus 337 ~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~-~n~-Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~ 414 (511) T protein:vir:96 337 YDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS-GTQ-SGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRS 414 (511) T ss_pred CCHHHHHHHHHHHHHHHHHHhCCccccccccc-ccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 44556677788899999999999976544322 121 1122211 12222333333333333222110 Q ss_pred ---CcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCC Q lcl|Aclame:pro 338 ---TGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPF 414 (454) Q Consensus 338 ---~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 414 (454) ......+.+.|..-+..+..+.++.+.++. |+++..-+.+++++- ++.+.-+ ..+............. T Consensus 415 ~~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~--G~iS~et~l~~l~~v--~d~~~El-----~ri~~E~~~~~~~~~~ 485 (511) T protein:vir:96 415 IDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFF--QDPELEV-----KKIEEDEKESIKKAQK 485 (511) T ss_pred CccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCC--CCHHHHH-----HHHHHHHHHHHHHHhh Confidence 111124567777778889999999999885 788887787776542 2211111 0111100000000000 Q ss_pred CccCcccCCCCCCcccCccccccccc Q lcl|Aclame:pro 415 ASSGKTASVPQAVAASDGNKAITETE 440 (454) Q Consensus 415 ~~~~~~~~~~~~~~~~d~~~~~~~~~ 440 (454) .......+.....+.++.+....+++ T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~e~~ 511 (511) T protein:vir:96 486 GIYKDPRDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred ccccCCCCCCCCCCCCCccCcccccC Confidence 00000000001111111111111111 No 173 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=98.82 E-value=3.5e-08 Score=61.44 Aligned_cols=405 Identities=8% Similarity=-0.043 Sum_probs=177.6 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhcc-ccccCCcccc-HHHHHhhHHHHHHHHHHHHhhcccceEEEeccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFA-GAWQQGVKAD-PEAVLSFHAVFACISLISQDIAKMRLRLMQTDA 78 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~ 78 (454) |++-+.+....-.. ...++.+--.... ........-. ......+.+...+|+.+++.+--..|.+ . T Consensus 22 l~~~~~~~~~r~~~--------~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~iVd~~~~~l~~~gf~~---~- 89 (479) T protein:vir:99 22 VFPKMNTECERLDD--------FEAWTKNGQEVPDLATRHKNKEREVLQQLSRKPWMGLMVNSFAQQLIVDGYRK---T- 89 (479) T ss_pred HHHHHHHHhHHHHH--------HHHHHhcCCcccccccccCChhHHHHHHHhhcCcHHHHHHHHHhhcccccccC---C- Confidence 44333211100000 0001110000000 0000000000 0111234566778887777664333322 1 Q ss_pred cccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEee-----CCCCceeEEEEecCcceEEEECCCCc- Q lcl|Aclame:pro 79 QGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIR-----NARGQIKELRILDWNRVEPLVADDGE- 152 (454) Q Consensus 79 ~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r-----~~~G~~~~l~~l~~~~~~~~~~~~g~- 152 (454) ++.. ...+..++.. | ........+..+++.+|.+|+++.. ++.|.+ .+..++|..+.+.++.... T Consensus 90 d~~~----~~~~~~i~~~-N---~~d~~~~~~~~~a~~~G~af~~v~~~~~~~d~~g~~-~i~~~~p~~~~~iydd~~~~ 160 (479) T protein:vir:99 90 GTNE----NAKGWDTWRL-N---QMDKQQFWLNRAVLTFGYAFIKVTSGISPLDGTTVA-RIKCIDPRDAFAIWEDPYWD 160 (479) T ss_pred Cchh----hHHHHHHHHh-c---ChhHHHHHHHHHHhhcCceEEEEecCCCCcCCCCce-EEEEechhheEEEecCCccc Confidence 1111 1223333333 3 2235667788889999999987753 233443 5677889888877654221 Q ss_pred --eeeEEecccc---------------ccccc-------eeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHH Q lcl|Aclame:pro 153 --VFYRITPDRN---------------CGITE-------AVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQ 208 (454) Q Consensus 153 --~~~~~~~~~~---------------~~~~~-------~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~ 208 (454) ..|.+..... ...+. +..+..-.|++|+++... ..+|.|-+..+...++..+... T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~-~~~g~sd~e~v~~liDa~~~~~ 239 (479) T protein:vir:99 161 EWPKYLLERQPNGQYWWWTEEDYSIFEFKQGKFIYRETVSHDYGHIPFVRYVNVMDL-RGVCYGDVEPLVTVAKAIDKTG 239 (479) T ss_pred ceeeEEEeecCceeEEEEecceEEEEEecCCceeeccccccCCCCcceEEeecCCCc-CcCCcchhHHHHHHHHHHHHHH Confidence 1111111000 00000 111222336777755443 3479998888877777777776 Q ss_pred HHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceec-CCCceeeeccccchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 209 ENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAIL-SNGAKYNPTTFSPVDSQTVEQLKMTAEIV 287 (454) Q Consensus 209 ~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl-~~g~~~~~l~~~~~d~~~~e~~~~~~~~I 287 (454) .-....+.-.+.|..++..-........+. ..+.- ..++++.+ ++++++.++..... ..+++.++....+| T Consensus 240 s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~--~~~~~-----~~~~i~~~~~~~~~~~q~~~~~~-~~~~~~l~~~i~~i 311 (479) T protein:vir:99 240 LDILLVQHHQSFQIRWATGLMLPEGANADQ--EKMRF-----AQESMLISQNEKASFGAIPAAPL-DGLLNAYKESLLEF 311 (479) T ss_pred HHHHHHHHHhhchhhhhcCCCcccccccch--hcccc-----ccccceeecCCCceEEEecccch-HHHHHHHHHHHHHH Confidence 666666666666766554311111111111 11111 12234443 45677766653222 24777888888999 Q ss_pred HHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cC----cccceeeecchhhhh Q lcl|Aclame:pro 288 CSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEAL----------ET----GENESTEFDVTTLLR 353 (454) Q Consensus 288 a~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l----------~~----~~~~~~~f~~~~l~~ 353 (454) +.+=++|++.+|...+ ++.++.. +....+.-.+...+..|...| .. .....+.+.+.+... T Consensus 312 ~~~t~~p~~~~g~~~n---~Sg~Al~--~~~~~l~~ka~~~~~~f~~al~~~~~l~~~~~~~~~~~~~~~i~~~w~~~~~ 386 (479) T protein:vir:99 312 LALAQLPPHIAGQIVN---VAADALA--AGTRQTMQKLFEKQATWKASHNQTMRLVNKIEGRTEEATDLDFTITWQDVTI 386 (479) T ss_pred hccCCCCHHHcccccc---hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceeeeEEecCCCC Confidence 9999999999985422 2222222 222222222322222222111 11 112245556666667 Q ss_pred cCHHHHHHHHHHHHhCCCcCHHHHHHHh-cCCCCC--Ccccc--ccccccccccccccccccccCCCccCcccCCCCCCc Q lcl|Aclame:pro 354 MDSERRMKTLGDAVKNTLLTPNEARKRE-NLPPLA--GGDAL--YLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVA 428 (454) Q Consensus 354 ~d~~~~~~~~~~~~~~g~~T~NE~R~~~-g~~p~~--~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (454) .+..+.++.+.+++++|+++...+.+++ |+++.. ..... .-.....-.........+....++..+.... .... T Consensus 387 ~s~~~~ad~~~kl~~ag~is~et~l~~l~gv~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 465 (479) T protein:vir:99 387 QSLAQFADAWAKMVESLKIPAEGVWDMIPNLDQSTVNGWKEIYDREGDFGKYMRKLQNGPDPAEQRGGPNGATNM-QQAN 465 (479) T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCCCCCCCCC-CCCC Confidence 7888899999999999998887777776 775421 10000 0000000000000000000001111111000 1111 Q ss_pred ccCc-ccccccccc Q lcl|Aclame:pro 429 ASDG-NKAITETEH 441 (454) Q Consensus 429 ~~d~-~~~~~~~~~ 441 (454) ++.+ -.+.-.++. T Consensus 466 ~~~~~~~~~~~~~~ 479 (479) T protein:vir:99 466 NKTGEPASLNKSGA 479 (479) T ss_pred CCCcchhccCCCCC Confidence 1111 111111221 No 174 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=98.82 E-value=1.9e-08 Score=62.91 Aligned_cols=399 Identities=14% Similarity=0.133 Sum_probs=182.0 Q ss_pred Ccchhhhhcccc---------------ccccccCc------ccchhhhhhhhhhcccccc--CCccccHHHHHhhHHHHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQ---------------KSGRDVRE------AGWTSLFQAVAEPFAGAWQ--QGVKADPEAVLSFHAVFA 57 (454) Q Consensus 1 m~n~f~r~~~~~---------------~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~ 57 (454) ||.-|+++.+.- ........ ..|...+.+-...+..... .+.... +..+....... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~yy~g~~~~~~~~~~~~~~~~~~-~~~~~~n~~k~ 79 (496) T protein:vir:38 1 MINQIIAGVKGVMRRMGLLKALKDVKDHKKVNANDEDYKYIDMWKRLYQGHYAEWHNLNYEHNGNPVN-RRQLSMNLPKV 79 (496) T ss_pred ChhHHHHHHHHHHHHhccchhhHHHHhcCCCcCCHHHHHHHHHHHHHhcCCCchhhcchhccCCCccc-cceeecchHHH Confidence 776443332210 00000000 0011111110011100000 000000 11122345566 Q ss_pred HHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEE Q lcl|Aclame:pro 58 CISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRI 137 (454) Q Consensus 58 ~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~ 137 (454) +++..|+.+.+-|..+-..++ .....+..++. .-...+-...++.+.+.+|.+|+.+..+.+|.+ .+.. T Consensus 80 i~~~~a~~l~~~p~~i~~~d~------~~~e~l~~~~~----~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~-~i~~ 148 (496) T protein:vir:38 80 TAKYMSKLLFNEKVKINIDDK------AAEEFVLNVLK----TNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNV-KVSF 148 (496) T ss_pred HHHHHhhhhhCCcceEeeCCh------HHHHHHHHHHh----ccCHHHHHHHHHHHHhhhCcEEEEEEEcCCCcE-EEEE Confidence 788888888777776632111 11112222322 234555677778889999999999988887765 5677 Q ss_pred ecCcceEEEECCCCcee--------------eEE----e--------------ccccccccceeEE-------------- Q lcl|Aclame:pro 138 LDWNRVEPLVADDGEVF--------------YRI----T--------------PDRNCGITEAVTV-------------- 171 (454) Q Consensus 138 l~~~~~~~~~~~~g~~~--------------~~~----~--------------~~~~~~~~~~~~~-------------- 171 (454) ++|..+-+..+..+... |+. . .......+.++.+ T Consensus 149 v~~~~~~P~~~~~~~~~~~~f~~~~~~~~~~y~~le~h~~~~~~~~I~~~~y~~~~~~~~g~~v~~~~~~~~~~~~~~~~ 228 (496) T protein:vir:38 149 ATADCMYPLSNDSENVDECVIANSFHKNNKYYTLLEWNEWQGDVYTVTTELYQSDDPNELGTKVSLTLLFDDIEPVVPLP 228 (496) T ss_pred EcccceEEEEecCCcEEEEEEEEEEEeCCeEEEEEEEEEEeCceEEEEEEEEecCCccccCccccccccccccccceeec Confidence 88888877555444320 100 0 0000000111100 Q ss_pred --ehhheEEeecCC----CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHH----HHHHHHH Q lcl|Aclame:pro 172 --PAREVIHDRFNC----FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEE----NAKKLKS 241 (454) Q Consensus 172 --~~~~vih~~~~~----~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e----~~~~~~~ 241 (454) +.--++|++.+- .....+|+|.+..+...++..+.+.....+-|+. +.+..++ +..+-+. .-+. .. T Consensus 229 ~~~~~~f~~~~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~-~~~~i~v--~~~~l~~~~~~~g~~-~~ 304 (496) T protein:vir:38 229 DFTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKL-GKKKVLV--PSSFVKTAVNLDGST-TQ 304 (496) T ss_pred CCCcceEEEecCCcccccccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhh-cccceec--chHHhhccCCCCCcc-cc Confidence 001123443221 2234579999999888888887776655555665 3444433 1111000 0000 00 Q ss_pred HHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHH-------- Q lcl|Aclame:pro 242 NWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALE-------- 313 (454) Q Consensus 242 ~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~-------- 313 (454) .|.....--......-.+++..++.++.....-++.+..+...++|+...|+|+..+|...++. +|+.+.. T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~~~~g~-~tAtei~~~~~~l~~ 383 (496) T protein:vir:38 305 YFDSTDEAFFLYQGDQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGL-KTATEVVSEKSETYQ 383 (496) T ss_pred CCCCccceEEEeecCCCcccccceeeccccCHHHHHHHHHHHHHHHHHhhCCChhhcCCCcccc-chHHHHHHHHHHHHH Confidence 0000000000000001122334565655555567888899999999999999999999765543 2333321 Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHhh-c---CcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh-cC Q lcl|Aclame:pro 314 -----QQYYSQCLQTLIESIELLLDEAL-E---TGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRE-NL 383 (454) Q Consensus 314 -----~~~~~~~i~P~~~~ie~~l~~~l-~---~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~-g~ 383 (454) ...++.++..++..|....+... + ......+.+.+++-+..|..+.++.+.+++.+|+|+.-.++... |. T Consensus 384 ~~~~~~~~~~~~l~~l~~~il~~~~~~~~~~g~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~~~~GiiS~et~l~~~~~~ 463 (496) T protein:vir:38 384 TKNSHSQLIEQGIKEMIVSILEVGKFIEAYSGEVVELDTITVDFDDSIAQDEDTTINRYTNAKNQGMIPLKIALQRAWNI 463 (496) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCC Confidence 11122333333333332222111 1 11234567788888888999999999999999999988776543 33 Q ss_pred CCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccccccccc Q lcl|Aclame:pro 384 PPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETE 440 (454) Q Consensus 384 ~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 440 (454) +. ++..+.+ ..+. .......+.. |......+.+ T Consensus 464 ~d-~ea~~el-----~ri~---~E~~~~~~~~---------------d~~~~~~~~e 496 (496) T protein:vir:38 464 TE-AEADEWA-----EMLA---KEKQAEMPNN---------------DMNGIFGEEE 496 (496) T ss_pred Ch-HHHHHHH-----HHHH---HhhhccCccc---------------cccCCCCCCC Confidence 21 1111111 0010 0000000000 0000000011 No 175 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=98.82 E-value=2.8e-08 Score=61.96 Aligned_cols=392 Identities=10% Similarity=-0.031 Sum_probs=178.8 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhh-hccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAE-PFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) |.+-|......+-.. ....+.+--. +.......... ....-+.++.....|+..++.+-+-|..+...+.+ T Consensus 1 ~~~~~~~~~~~r~~~-------l~~yy~g~~~~~~~~~~~~~~~-~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~~~ 72 (440) T protein:vir:95 1 MLAAFLGSQKQRLAI-------LASYAQGDNFSILSGHRRLDDE-KADYRVRHKWGGYISSFATGYVIGNPVSIGVMEGG 72 (440) T ss_pred ChhhHHHHHHHHHHH-------HHHHhccCCccccccccccccc-CCcceeecchHHHHHHhhhhheeccCceEeeCCCc Confidence 444443222211000 0000000000 00000000000 00111345667778888888887778776422211 Q ss_pred ccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCC--ceeeEE Q lcl|Aclame:pro 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDG--EVFYRI 157 (454) Q Consensus 80 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g--~~~~~~ 157 (454) .. . ....+..++.+ -........+..+.+.+|.+|+.+..+.+|.+ .+..++|..+.+..+... ...+.+ T Consensus 73 ~~--~-~~~~l~~~~~~----n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i 144 (440) T protein:vir:95 73 SA--D-QLSTIKDIEWQ----NDINALNSDLAFDASVYGRAYEYHFRDKDKVD-RVVLISPLEMFVIRDLTVEQNIIAAV 144 (440) T ss_pred cH--H-HHHHHHHHHHh----cCHhHHHHHHHHHHhhcCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEE Confidence 11 1 11112222222 13444566778889999999999888888876 467789999999887643 222111 Q ss_pred eccccccccceeEEehh----------------------------heEEeecCCCcCcccccchhhhhHhHHHHHHHHHH Q lcl|Aclame:pro 158 TPDRNCGITEAVTVPAR----------------------------EVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQE 209 (454) Q Consensus 158 ~~~~~~~~~~~~~~~~~----------------------------~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~ 209 (454) .............+..+ .|++++. ...|.|-+..+...++..+.+.. T Consensus 145 ~~~~~~~~~~~~vyt~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~lida~~~~~s 219 (440) T protein:vir:95 145 HLPIYADKVNMTVYTKDKVITYKPYSNNSVRLVVDDVKKHSYNDVPVVEWWN-----NRFRMGDYESEISLIDAYDAGQS 219 (440) T ss_pred EEEEecCceEEEEEeCCeEEEEEEecCCccceeecceeeccCceeeEEEeeC-----CCCCCCchhhhHHHHHHHHHHHH Confidence 10000000000011122 2334332 23577777777777777776666 Q ss_pred HHHHHHhccCCcceeEecC---ccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHH Q lcl|Aclame:pro 210 NSTSFFRNGGRPSGVIEIP---GSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEI 286 (454) Q Consensus 210 ~~~~~~~ng~~p~~~l~~~---~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~ 286 (454) ...+.....+.|-.+++.. ...++++...+++.-.-... ........+++.++..+........+....+...+. T Consensus 220 ~~~~~~~~~~~~~~v~~g~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~ 297 (440) T protein:vir:95 220 DTANYMSDLNDAMLLVKGDLDGIKLSPEDAAKMKDANMLFLK--TGISTTGQQTTADASYIYKQYDVNGTEAYKNRLAND 297 (440) T ss_pred HHHHHHHHhhcceeeeecccccCCCCccchhhhhhccceecc--cccccccCCCCcceeEEeecCCHHHHHHHHHHHHHH Confidence 6666666667777766543 22344555544332221111 011111123344444444444445577788899999 Q ss_pred HHHHhccchhhhcccccccccCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhcCc-ccceeeecchhhh Q lcl|Aclame:pro 287 VCSVFRVPAYKIGVGQPPSSDNVEALEQ-------------QYYSQCLQTLIESIELLLDEALETG-ENESTEFDVTTLL 352 (454) Q Consensus 287 Ia~~fgvp~~~lg~~~~~~~~n~e~~~~-------------~~~~~~i~P~~~~ie~~l~~~l~~~-~~~~~~f~~~~l~ 352 (454) |+..-++|..-.+... ++- +..+... ..+...+..+++.|...++..--.. ....+.+.+..-. T Consensus 298 i~~~s~~p~~~~~~~~-~n~-Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~v~i~f~~~~ 375 (440) T protein:vir:95 298 IHRFSRIPNLDDDRFN-STS-SGIALLYKMIGLEQVRKDKETYFTKALRRRYELISNIHKAINGPVIEANKLTFTFHPNI 375 (440) T ss_pred HHHHhCCccccccccc-ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccceEEeCCCC Confidence 9999999975443322 121 1122111 1222233333333333322111011 1234567777778 Q ss_pred hcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCc Q lcl|Aclame:pro 353 RMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDG 432 (454) Q Consensus 353 ~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 432 (454) ..+..+.++.+.++ .|+++..-+.++++.-..+ .+. ..+.........+..+.. +. .. . T Consensus 376 p~~~~~~ad~~~kl--~g~iS~et~~~~l~~~d~~--~E~------~ri~~E~~~~~~~~~~~~-~~-~~----~----- 434 (440) T protein:vir:95 376 PQDVWTEIKAYIEA--GGEISQETLMENASFTDYK--TEH------SRILKQGGSSDLEIGQIV-GD-AD----V----- 434 (440) T ss_pred CCCHHHHHHHHHHH--hccCcHHHHHHhCCCCCcH--HHH------HHHHHHHHHhhhhHHhhc-cC-CC----C----- Confidence 88999999999888 5788877777776542111 111 011110010011000000 00 00 0 Q ss_pred cccccccc Q lcl|Aclame:pro 433 NKAITETE 440 (454) Q Consensus 433 ~~~~~~~~ 440 (454) ...+.| T Consensus 435 --~~~~~e 440 (440) T protein:vir:95 435 --GQADTE 440 (440) T ss_pred --CCcCCC Confidence 000000 No 176 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=98.80 E-value=2.5e-08 Score=62.27 Aligned_cols=418 Identities=7% Similarity=-0.070 Sum_probs=175.4 Q ss_pred Ccchh-------------hhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MWNLL-------------RRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIA 67 (454) Q Consensus 1 m~n~f-------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va 67 (454) .++|+ .+...........+..-....+.+.-..+...........+..-+..+.....++..++.+. T Consensus 28 ~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~ 107 (511) T protein:vir:99 28 VYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFL 107 (511) T ss_pred ccccchhhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccccCcccccccCcceeecchHHHHHHHHHhhhc Confidence 11111 11100000000000000000000000000000000000000111224556677788888887 Q ss_pred ccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEE Q lcl|Aclame:pro 68 KMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLV 147 (454) Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~ 147 (454) +-|+.+-.. +.. ....+..++.. | ........+..+++.+|.+|+++.++.+|.+ .+..++|..+.++. T Consensus 108 g~p~~~~~~--d~~----~~~~l~~~~~~-n---~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~-~i~~~~p~~~~~vy 176 (511) T protein:vir:99 108 GNPIQYQDD--DKD----VLEAIEAFNDL-N---DVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIY 176 (511) T ss_pred ccCceeecC--chH----HHHHHHHHHhh-c---CHhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEE Confidence 888776321 111 11223333333 2 3445677788899999999999988888864 57788999988887 Q ss_pred CCC--CceeeEEec----ccccccc----ceeEEehhheEEeecCCC-------------------------cCcccccc Q lcl|Aclame:pro 148 ADD--GEVFYRITP----DRNCGIT----EAVTVPAREVIHDRFNCF-------------------------FHPLIGLP 192 (454) Q Consensus 148 ~~~--g~~~~~~~~----~~~~~~~----~~~~~~~~~vih~~~~~~-------------------------~~~~~G~s 192 (454) +.. +...+.+.. ....... ....+.++.+.+++.... .+...|.| T Consensus 177 d~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~s 256 (511) T protein:vir:99 177 DNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKG 256 (511) T ss_pred cCCCCCceEEEEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCccccccccccccccCCCCccceEEecCCCCCCC Confidence 653 222111110 0000000 001223333333321100 01235778 Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcC-c-ccCCceecCCCceeeecccc Q lcl|Aclame:pro 193 PVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTG-E-NAGKTAILSNGAKYNPTTFS 270 (454) Q Consensus 193 ~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g-~-n~g~~~vl~~g~~~~~l~~~ 270 (454) -+..+...++....+.--..+.+...+.|-.++.-....+.+.....++.-.-.... . -.+...-.++|.+++-++.. T Consensus 257 d~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 336 (511) T protein:vir:99 257 DYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQ 336 (511) T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccCchhhcccccccceecccccccccccccCCCCcceeEEeec Confidence 777777777766665555555555555565555443333333333222110000000 0 00111123445666666555 Q ss_pred chhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 271 PVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQY-------------YSQCLQTLIESIELLLDEALE 337 (454) Q Consensus 271 ~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~-------------~~~~i~P~~~~ie~~l~~~l~ 337 (454) .....+....+...+.|+..-++|....+... +|- +..+....+ +...+.-+++.|...+...-- T Consensus 337 ~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~-gn~-Sg~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~ 414 (511) T protein:vir:99 337 YDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS-GTQ-SGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRS 414 (511) T ss_pred CCHHHHHHHHHHHHHHHHHHhCCccccccccc-ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 55566777788899999999999986443322 221 122221111 122222222222222221110 Q ss_pred ---CcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCC Q lcl|Aclame:pro 338 ---TGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPF 414 (454) Q Consensus 338 ---~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 414 (454) ......+.+.+..-+..+..+.++.+.++. |+++..-+.++++.-+ +.+.-+ ..+........ +... T Consensus 415 ~~~~~~~~~i~i~f~~~~p~n~~e~~~~~~kl~--GiiS~et~l~~l~~v~--D~~~E~-----~ri~~E~~~~~-~~~~ 484 (511) T protein:vir:99 415 IDVSKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQ--DPELEV-----KKIEEDEKESI-KKAQ 484 (511) T ss_pred cccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHHHHhCCCCC--CHHHHH-----HHHHHHHHHHH-HHHh Confidence 011123566677777888899999988884 7898877888875432 211110 00000000000 0000 Q ss_pred CccCcccCCCCCCcccCcccccccccc Q lcl|Aclame:pro 415 ASSGKTASVPQAVAASDGNKAITETEH 441 (454) Q Consensus 415 ~~~~~~~~~~~~~~~~d~~~~~~~~~~ 441 (454) .............+.++..+...+.+. T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~d~~e 511 (511) T protein:vir:99 485 KNMYQDPRNINDDEQDDSTKDSIDKKE 511 (511) T ss_pred hcccccCCCCCCCCCCCCCcCcccccC Confidence 000000000011111111111111111 No 177 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=98.79 E-value=4.8e-08 Score=60.70 Aligned_cols=396 Identities=8% Similarity=-0.043 Sum_probs=181.0 Q ss_pred Cc--chhhhhccc---c-ccc-cc---cC-cccchhhhh-----hhhhhc-cccccCCccccHHHHHhhHHHHHHHHHHH Q lcl|Aclame:pro 1 MW--NLLRRTRKN---Q-KSG-RD---VR-EAGWTSLFQ-----AVAEPF-AGAWQQGVKADPEAVLSFHAVFACISLIS 63 (454) Q Consensus 1 m~--n~f~r~~~~---~-~~~-~~---~~-~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~i~~ia 63 (454) -+ .++.+.... . .+. .. .. ...+..... ...... ...... ....+..-+.++....+|+..+ T Consensus 14 ~~~~e~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ki~~n~~~~ivd~~~ 92 (474) T protein:vir:10 14 GILPKHIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRR-LDVSVNNKLNNSFDSEIVDTRV 92 (474) T ss_pred CCCHHHHHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccc-cccCcccccccchHHHHHHhHh Confidence 00 011111000 0 000 00 00 000000000 000000 000000 0000001123566777888888 Q ss_pred HhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcce Q lcl|Aclame:pro 64 QDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRV 143 (454) Q Consensus 64 ~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~ 143 (454) ..+-+-|+.+.-..+... ...+...+.+-............+..+++.+|.||.++..+.+|.+ .+..++|..+ T Consensus 93 ~yl~g~pv~~~~~~~~~~-----~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~~~~i~p~~~ 166 (474) T protein:vir:10 93 GYLHGVPVTYDLDENAEK-----NEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDI-RIKNIDPYNV 166 (474) T ss_pred hheeccceeEeeCCCCcc-----hHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCee-EEEEEcccce Confidence 888888887643222111 1112222222222234556777888899999999998888888865 6778889888 Q ss_pred EEEECCCCceeeEEeccc--ccccc------------------------------ceeEEehhheEEeecCCCcCccccc Q lcl|Aclame:pro 144 EPLVADDGEVFYRITPDR--NCGIT------------------------------EAVTVPAREVIHDRFNCFFHPLIGL 191 (454) Q Consensus 144 ~~~~~~~g~~~~~~~~~~--~~~~~------------------------------~~~~~~~~~vih~~~~~~~~~~~G~ 191 (454) -++.+..+...+.+..+. ....+ .+..+..-.+++++ +...|. T Consensus 167 ~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~ 241 (474) T protein:vir:10 167 IFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVP-----NNKEMI 241 (474) T ss_pred EEEEcCCCceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEec-----CCCCCC Confidence 887766554321110000 00000 00011111223333 223577 Q ss_pred chhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccc Q lcl|Aclame:pro 192 PPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSP 271 (454) Q Consensus 192 s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~ 271 (454) |-+..+...++....+.--..+.+...+.|-.+++- ...+++.....+ ..+.+.+.+++.++.-+.... T Consensus 242 sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~g-~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~ 310 (474) T protein:vir:10 242 GDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRG-MGMSEEMIQETQ----------KSGAFELFDKDMDVKYLTKDV 310 (474) T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcc-CCCCchhhhhhh----------hcceeEecCCCCceeEEeccC Confidence 777777777776666555555555555556655533 233333222221 133445556666666665554 Q ss_pred hhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 272 VDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ-------------QYYSQCLQTLIESIELLLDEALET 338 (454) Q Consensus 272 ~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~-------------~~~~~~i~P~~~~ie~~l~~~l~~ 338 (454) .+..+....+...+.|+..-++|....+... +|- +.++... ..+..++.-+++.|...++.+-.. T Consensus 311 ~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~-~n~-Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~ 388 (474) T protein:vir:10 311 NDTMIENHLDRIEKNIMRFAKSVNFNSDEFN-GNV-PIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYN 388 (474) T ss_pred CHHHHHHHHHHHHHHHHHHhCCccccccccc-ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC Confidence 5556777889999999999999975443222 121 1122211 223333333333444433332111 Q ss_pred ---cccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCC Q lcl|Aclame:pro 339 ---GENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFA 415 (454) Q Consensus 339 ---~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (454) .....+.+.|..-+..|..+.++.+.++. |+++..-+.+++++-+ +.+..+ ..+..... ........ T Consensus 389 ~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl~--g~iS~et~~~~l~~v~--d~~~E~-----eri~~E~~-e~~~~~~~ 458 (474) T protein:vir:10 389 LDDDSYLNLIFKFTRNIPVNKLEESQVLINLK--GQVSERTRLGQSQLVD--DVDYEL-----DEMEKESL-EFNDKLPD 458 (474) T ss_pred CCccccccceEEeCCCCCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCC--CHHHHH-----HHHHHHHH-HHHhhccc Confidence 11234677778778889999999998884 8899888888876532 211110 00100000 00000000 Q ss_pred ccCcccCCCCCCcccCccccccc Q lcl|Aclame:pro 416 SSGKTASVPQAVAASDGNKAITE 438 (454) Q Consensus 416 ~~~~~~~~~~~~~~~d~~~~~~~ 438 (454) ..++. ....+++++. | T Consensus 459 ~~~~~--~~~~~~~~~s-----~ 474 (474) T protein:vir:10 459 IDEGD--ANDKSQNNQS-----E 474 (474) T ss_pred ccCCC--cCCCCccccC-----C Confidence 00000 0001111111 1 No 178 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=98.79 E-value=4.8e-08 Score=60.70 Aligned_cols=396 Identities=8% Similarity=-0.043 Sum_probs=181.0 Q ss_pred Cc--chhhhhccc---c-ccc-cc---cC-cccchhhhh-----hhhhhc-cccccCCccccHHHHHhhHHHHHHHHHHH Q lcl|Aclame:pro 1 MW--NLLRRTRKN---Q-KSG-RD---VR-EAGWTSLFQ-----AVAEPF-AGAWQQGVKADPEAVLSFHAVFACISLIS 63 (454) Q Consensus 1 m~--n~f~r~~~~---~-~~~-~~---~~-~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~i~~ia 63 (454) -+ .++.+.... . .+. .. .. ...+..... ...... ...... ....+..-+.++....+|+..+ T Consensus 14 ~~~~e~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ki~~n~~~~ivd~~~ 92 (474) T protein:vir:94 14 GILPKHIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRR-LDVSVNNKLNNSFDSEIVDTRV 92 (474) T ss_pred CCCHHHHHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccc-cccCcccccccchHHHHHHhHh Confidence 00 011111000 0 000 00 00 000000000 000000 000000 0000001123566777888888 Q ss_pred HhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcce Q lcl|Aclame:pro 64 QDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRV 143 (454) Q Consensus 64 ~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~ 143 (454) ..+-+-|+.+.-..+... ...+...+.+-............+..+++.+|.||.++..+.+|.+ .+..++|..+ T Consensus 93 ~yl~g~pv~~~~~~~~~~-----~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~~~~i~p~~~ 166 (474) T protein:vir:94 93 GYLHGVPVTYDLDENAEK-----NEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDI-RIKNIDPYNV 166 (474) T ss_pred hheeccceeEeeCCCCcc-----hHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCee-EEEEEcccce Confidence 888888887643222111 1112222222222234556777888899999999998888888865 6778889888 Q ss_pred EEEECCCCceeeEEeccc--ccccc------------------------------ceeEEehhheEEeecCCCcCccccc Q lcl|Aclame:pro 144 EPLVADDGEVFYRITPDR--NCGIT------------------------------EAVTVPAREVIHDRFNCFFHPLIGL 191 (454) Q Consensus 144 ~~~~~~~g~~~~~~~~~~--~~~~~------------------------------~~~~~~~~~vih~~~~~~~~~~~G~ 191 (454) -++.+..+...+.+..+. ....+ .+..+..-.+++++ +...|. T Consensus 167 ~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~ 241 (474) T protein:vir:94 167 IFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVP-----NNKEMI 241 (474) T ss_pred EEEEcCCCceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEec-----CCCCCC Confidence 887766554321110000 00000 00011111223333 223577 Q ss_pred chhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccc Q lcl|Aclame:pro 192 PPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSP 271 (454) Q Consensus 192 s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~ 271 (454) |-+..+...++....+.--..+.+...+.|-.+++- ...+++.....+ ..+.+.+.+++.++.-+.... T Consensus 242 sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~g-~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~ 310 (474) T protein:vir:94 242 GDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRG-MGMSEEMIQETQ----------KSGAFELFDKDMDVKYLTKDV 310 (474) T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcc-CCCCchhhhhhh----------hcceeEecCCCCceeEEeccC Confidence 777777777776666555555555555556655533 233333222221 133445556666666665554 Q ss_pred hhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 272 VDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ-------------QYYSQCLQTLIESIELLLDEALET 338 (454) Q Consensus 272 ~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~-------------~~~~~~i~P~~~~ie~~l~~~l~~ 338 (454) .+..+....+...+.|+..-++|....+... +|- +.++... ..+..++.-+++.|...++.+-.. T Consensus 311 ~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~-~n~-Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~ 388 (474) T protein:vir:94 311 NDTMIENHLDRIEKNIMRFAKSVNFNSDEFN-GNV-PIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYN 388 (474) T ss_pred CHHHHHHHHHHHHHHHHHHhCCccccccccc-ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC Confidence 5556777889999999999999975443222 121 1122211 223333333333444433332111 Q ss_pred ---cccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCC Q lcl|Aclame:pro 339 ---GENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFA 415 (454) Q Consensus 339 ---~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (454) .....+.+.|..-+..|..+.++.+.++. |+++..-+.+++++-+ +.+..+ ..+..... ........ T Consensus 389 ~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl~--g~iS~et~~~~l~~v~--d~~~E~-----eri~~E~~-e~~~~~~~ 458 (474) T protein:vir:94 389 LDDDSYLNLIFKFTRNIPVNKLEESQVLINLK--GQVSERTRLGQSQLVD--DVDYEL-----DEMEKESL-EFNDKLPD 458 (474) T ss_pred CCccccccceEEeCCCCCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCC--CHHHHH-----HHHHHHHH-HHHhhccc Confidence 11234677778778889999999998884 8899888888876532 211110 00100000 00000000 Q ss_pred ccCcccCCCCCCcccCccccccc Q lcl|Aclame:pro 416 SSGKTASVPQAVAASDGNKAITE 438 (454) Q Consensus 416 ~~~~~~~~~~~~~~~d~~~~~~~ 438 (454) ..++. ....+++++. | T Consensus 459 ~~~~~--~~~~~~~~~s-----~ 474 (474) T protein:vir:94 459 IDEGD--ANDKSQNNQS-----E 474 (474) T ss_pred ccCCC--cCCCCccccC-----C Confidence 00000 0001111111 1 No 179 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=98.76 E-value=5.9e-08 Score=60.23 Aligned_cols=393 Identities=10% Similarity=0.002 Sum_probs=177.2 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhcccc---ccC--CccccHHHHHhhHHHHHHHHHHHHhhcccceEEEe Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGA---WQQ--GVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQ 75 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~ 75 (454) .+.++.+......... .+..-...++.+--..+... ... ........-+..+....+|+..+..+-+-|+.+.. T Consensus 25 ~~~~i~~~i~~~~~~~-~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~ 103 (472) T protein:vir:93 25 LEEMIVRYIKQHLEKL-PEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH 103 (472) T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhccccccccccchhhccccccccccccccccchHHHHHHHHhhhhcccCeeecc Confidence 1222222111100000 00000000111000000000 000 00000011123577788899999988888877632 Q ss_pred ccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCC--Cce Q lcl|Aclame:pro 76 TDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADD--GEV 153 (454) Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~--g~~ 153 (454) .++ . ....+..++. | ........+..+.+.+|.||+++..+.+|.+ .+..++|..+.+.++.. +.. T Consensus 104 ~d~--~----~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~d~~~-~i~~~~p~~~~~i~d~~~~~~~ 171 (472) T protein:vir:93 104 TDD--E----VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEEL 171 (472) T ss_pred CCh--H----HHHHHHHHHh--c---cHHHHHHHHHHHHhhcCeEEEEEEECCCCce-EEEEEcccceEEEEcCCCCCce Confidence 111 1 1122333332 2 2345566678889999999999888888875 57788999999887642 222 Q ss_pred eeEEeccccccccceeEEehh-----------------------------------heEEeecCCCcCcccccchhhhhH Q lcl|Aclame:pro 154 FYRITPDRNCGITEAVTVPAR-----------------------------------EVIHDRFNCFFHPLIGLPPVYAAG 198 (454) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------~vih~~~~~~~~~~~G~s~l~~~~ 198 (454) .+.+..+..........+... .|++++. ...|.|-+..+. T Consensus 172 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n-----n~~g~s~~e~v~ 246 (472) T protein:vir:93 172 EAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYK 246 (472) T ss_pred EEEEEEEEeecceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecC-----CCCCCCchhhhH Confidence 111100000000000011111 1233321 236888888887 Q ss_pred hHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHH Q lcl|Aclame:pro 199 LAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVE 278 (454) Q Consensus 199 ~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e 278 (454) ..++..+.+.-...+.+...+.|..++.-- +.+........+. ..+++.++++.+...+........+.. T Consensus 247 ~liDa~~~~~s~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (472) T protein:vir:93 247 TLIDAYNRRLSDLSNTFKDSNELTYVLTNY---DDQELPEFKRLLR-------YYGAIKVSDNGGVDTIQVEVPVENSKK 316 (472) T ss_pred HHHHHHHHHHHHHHHHHHHhcCceeEeecC---CcccchhhHHHHh-------hccccccCCCCcceeEeecCCHHHHHH Confidence 777777766666666666677776665432 2222222222221 223455555555555554555667788 Q ss_pred HHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhhcCcccceee Q lcl|Aclame:pro 279 QLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQY-------------YSQCLQTLIESIELLLDEALETGENESTE 345 (454) Q Consensus 279 ~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~-------------~~~~i~P~~~~ie~~l~~~l~~~~~~~~~ 345 (454) ..+...+.|+..-++|..-.+... ++- +.++....+ +...++-+++.|...++. ......+. T Consensus 317 ~~~~l~~~i~~~s~~p~~~~~~~~-~n~-Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~---~~~~~~i~ 391 (472) T protein:vir:93 317 YLDELYQKIMLFGQAVDFSSDKFG-SAP-SGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI---KGEHKDVD 391 (472) T ss_pred HHHHHHHHHHHHhCCCCCCccccc-cCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---Ccccceee Confidence 889999999999999875443221 111 222221111 112222222222222211 12234556 Q ss_pred ecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCC Q lcl|Aclame:pro 346 FDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQ 425 (454) Q Consensus 346 f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (454) +.+..-+..|..+.++.+.++ .|+++..-+.+++++-..+ +.-+ ..+..... ...... ...... ..+. T Consensus 392 v~f~~~~p~~~~~~~~~~~k~--~giis~et~l~~l~~~~d~--~~E~-----~ri~~E~~-~~~~~~-~~~~~~-~~d~ 459 (472) T protein:vir:93 392 ISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDL--QAEL-----ERIEQEQM-EYNKQL-PNLDDG-GADG 459 (472) T ss_pred EEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCH--HHHH-----HHHHHHHH-HHHHhc-cCcCcc-cCCC Confidence 667777788889999998887 4788887787777653211 1110 00000000 000000 000000 0011 Q ss_pred CCcccCccccccc Q lcl|Aclame:pro 426 AVAASDGNKAITE 438 (454) Q Consensus 426 ~~~~~d~~~~~~~ 438 (454) .++.++.+.+..+ T Consensus 460 ~~~~~~~~~~~~e 472 (472) T protein:vir:93 460 AQQQERSNNKESE 472 (472) T ss_pred CCCCCCCCcccCC Confidence 1111111111111 No 180 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=98.75 E-value=6.7e-08 Score=59.90 Aligned_cols=405 Identities=12% Similarity=0.028 Sum_probs=175.4 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhh-ccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEP-FAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) |.+.+.+....-.. ...+..+--.. ..+... .......-....+...+|+..++.+--.+|.+ .++ T Consensus 11 L~~~~~~~~~r~~~--------~~~Yy~G~~~i~~~~~~~--~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~---~~d 77 (480) T protein:vir:78 11 LQGLLARDLPNLLE--------AEAYRNGTRRLKTIGIGA--PPELAYLDVQPGWVATYLRTLSDRLDIEGFRI---SED 77 (480) T ss_pred HHHHHHHHHHHHHH--------HHHHHhccccchhccccc--chhhhhhhhhcchHHHHHHHHHhhhccCceec---CCC Confidence 33333221110000 00011100000 000000 00000111223455667777777664444432 111 Q ss_pred ccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeC------CCCceeEEEEecCcceEEEECCC--C Q lcl|Aclame:pro 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRN------ARGQIKELRILDWNRVEPLVADD--G 151 (454) Q Consensus 80 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~------~~G~~~~l~~l~~~~~~~~~~~~--g 151 (454) .. ....+..++.. | ........+..+++.+|.||+.+.+. .+|.+ .+.+++|..+.++++.. + T Consensus 78 ~~----~~~~l~~i~~~-N---~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~-~i~~~~p~~~~~i~D~~~~~ 148 (480) T protein:vir:78 78 SE----GLEELWNWWQA-N---DLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIP-LIRVESPLYMYAELDPRNTR 148 (480) T ss_pred ch----hHHHHHHHHHh-c---CHHHHHHHHHHHHhhcCceEEEeecCccccCCCCCee-EEEEEcccceEEEEcCCCcc Confidence 11 12223344332 2 34456778889999999999887653 34444 57788999999888753 2 Q ss_pred ceeeEEe----ccccc--------------------c-------ccc--eeEEehhheEEeecCCCcCcccccchhhh-h Q lcl|Aclame:pro 152 EVFYRIT----PDRNC--------------------G-------ITE--AVTVPAREVIHDRFNCFFHPLIGLPPVYA-A 197 (454) Q Consensus 152 ~~~~~~~----~~~~~--------------------~-------~~~--~~~~~~~~vih~~~~~~~~~~~G~s~l~~-~ 197 (454) ...+.+. .+... . ..+ +..+..-.|+||.+....+..+|.|-+.. + T Consensus 149 ~~~~~i~~~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~sdi~~~i 228 (480) T protein:vir:78 149 RVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISPEL 228 (480) T ss_pred ceEEEEEEEEeecCCcceEEEEEEeCCeEEEEEecCCCcccccccccccccCCCCcceEEeecccccCCccCccchhHHH Confidence 2111110 00000 0 000 01122234577776655666788886643 3 Q ss_pred HhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecC-CCceeeeccccchhhHH Q lcl|Aclame:pro 198 GLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILS-NGAKYNPTTFSPVDSQT 276 (454) Q Consensus 198 ~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~d~~~ 276 (454) ...++..+...--......-.+.|..++.. ....+...+.-...|... .+.++.++ ++.++..+.....+ .+ T Consensus 229 ~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~ 301 (480) T protein:vir:78 229 RKVTDAASRTLMNLQSASQILGTPLRVISG-VTTDELTNDGENTTLDIY-----YGRILTLASEAAKISEFKAAELR-NF 301 (480) T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhhC-CCccccccccccchhhhh-----hhhhccCCCCCceEEecCccCHH-HH Confidence 444444444333333333334455554432 111111111111112211 23345554 45677666554333 37 Q ss_pred HHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cC----cccc Q lcl|Aclame:pro 277 VEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEAL----------ET----GENE 342 (454) Q Consensus 277 ~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l----------~~----~~~~ 342 (454) ++..+..+.+|+.+=++|+..+|.... |.++.++....+ ..+.-.+...+..+..-| .. .... T Consensus 302 ~~~l~~~i~~~~~~~~~p~~~fg~~~~-n~~Sg~Al~~~~--~~l~~k~~~~~~~f~~~l~~~~rl~~~~~~~~~~~~~~ 378 (480) T protein:vir:78 302 AEEMEVFRKEAASITGLPPQYLSSSSE-NPASAEAIIATD--SRIVKMAERKGRIFGGAWERAMRIAMQIMGREVTEEYT 378 (480) T ss_pred HHHHHHHHHHHhcccCCCHHHhccccC-chhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccce Confidence 888899999999999999999986432 222322222222 222223333222222111 11 1223 Q ss_pred eeeecchhhhhcCHHHHHHHHHHHHhCC--CcCHHHHHHHhcCCCCCC--ccccccccccccccccc---cccccccCCC Q lcl|Aclame:pro 343 STEFDVTTLLRMDSERRMKTLGDAVKNT--LLTPNEARKRENLPPLAG--GDALYLQQQNYSLEALS---RRDAREDPFA 415 (454) Q Consensus 343 ~~~f~~~~l~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~~g~~p~~~--~d~~~~~~~~~~~~~~~---~~~~~~~~~~ 415 (454) .+.+.+.+....+..+.++.+.+++.+| +++..-+++++|+.+.+- .....-...-..++... ..+....+.+ T Consensus 379 ~i~v~w~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (480) T protein:vir:78 379 RLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQADATPKP 458 (480) T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHhcccCCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhccccCCCccccCC Confidence 4566666667788888999999999876 566666788888875321 11110001111111111 1111111111 Q ss_pred ccCcccCCCCCCcccCcccccccccccHHH Q lcl|Aclame:pro 416 SSGKTASVPQAVAASDGNKAITETEHDAVK 445 (454) Q Consensus 416 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 445 (454) ..+.. .+.+... .+-..++..+ T Consensus 459 ~~~~~----~~~~~~~----~~~~~~~~~~ 480 (480) T protein:vir:78 459 TVTET----KTETQTS----PSGFNRTKTR 480 (480) T ss_pred CCCCC----CCccCCC----cccCCCcCCC Confidence 11100 0111111 1111111111 No 181 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=98.74 E-value=5.4e-08 Score=60.43 Aligned_cols=388 Identities=11% Similarity=-0.002 Sum_probs=165.9 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHH-----HHHhhHHHHHHHHHHHHhhcccceEEEe Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPE-----AVLSFHAVFACISLISQDIAKMRLRLMQ 75 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~i~~ia~~va~~~~~~~~ 75 (454) |++.+.+... +. .-...++.+--. .. ..+..+..+ .-..+.+...+|+..++.+--..|.+ T Consensus 35 l~~~~~~~~~---rl-----~~l~~YY~G~~~--~~--~~~~~~~~~~~~~~~~~v~n~~~~ivd~~a~~l~~~gf~~-- 100 (501) T protein:vir:25 35 MWRLHISERQ---WL-----DRIYEYTKGLRG--RP--EVPEGASDEVKELAKLSVKNVLSLVRDSFAQNLSVVGYRN-- 100 (501) T ss_pred HHHHHHHHHH---HH-----HHHHHHHhcCCC--ch--hccccCChhhhhhHhhhhcChHHHHHHHHHhhhcccceec-- Confidence 2222211100 00 000000000000 00 000001110 01123456677777776554333332 Q ss_pred ccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECC-C-C-c Q lcl|Aclame:pro 76 TDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVAD-D-G-E 152 (454) Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~-~-g-~ 152 (454) +++.. ...+..++.. |. .......+..+++.+|.+|+.+.++.+|. .+..++|..+.+.+++ . . . T Consensus 101 --~d~~~----~~~l~~i~~~-N~---~d~~~~~~~~~a~i~G~ay~~v~~de~~~--~i~~~sp~~~~~iy~D~~~~~~ 168 (501) T protein:vir:25 101 --ALAKE----NDPAWEMWQR-NR---MDARQAEVHRPALTYGASYVTVTPTDEGP--VFRTRSPRQILAVYADPSVDAW 168 (501) T ss_pred --CCccc----hHHHHHHHHh-cC---hhHHHHHHHHHHhhcCceEEEEecCCCCC--eEEEeccccEEEEEecCCCCcc Confidence 12211 1123333322 32 33456678888999999999988888774 4667889888866532 1 1 1 Q ss_pred eeeE--Ee-ccccc-cccc----------------------------------------------eeEEehhheEEeecC Q lcl|Aclame:pro 153 VFYR--IT-PDRNC-GITE----------------------------------------------AVTVPAREVIHDRFN 182 (454) Q Consensus 153 ~~~~--~~-~~~~~-~~~~----------------------------------------------~~~~~~~~vih~~~~ 182 (454) ..+. +. ..... .... ...+..-.++||... T Consensus 169 ~~~ai~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~f~N~ 248 (501) T protein:vir:25 169 PQYALETWVAQKDAKPHRRGVLYDDTYMYELDLGEVVLGDAGGGQATQQPVNVREVTDVIEHGATFEGKPVCPVVRFVNG 248 (501) T ss_pred eeEEEEEEeeccccCcceeEEEecCeeEEEEecCceeeeeccccccccccccccccccccccccccCCccceeeEeccCc Confidence 1111 10 00000 0000 000111134555433 Q ss_pred CCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecC-CC Q lcl|Aclame:pro 183 CFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILS-NG 261 (454) Q Consensus 183 ~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~-~g 261 (454) ... ..+|.|-+..+...++..+...-.......-.+.|..++.- .+.++.+. |+ . ..+++++++ ++ T Consensus 249 ~~~-~~~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i~G---~~~~~~~~----~~-~----~~~~i~~~~~~~ 315 (501) T protein:vir:25 249 RDA-DDMIVGEVAPLILLQQAINSVNFDRLIVSRFGANPQRVISG---WTGSKAEV----LK-A----SALRVWTFEDPE 315 (501) T ss_pred ccc-CccccchhhhhHHHHHHHHHHHHHHHHHHHhhccHHHHHhC---CCCCccch----hh-h----cccceeccCCCC Confidence 222 23577766555555555554444444444444445443321 12222221 11 1 134566665 46 Q ss_pred ceeeeccccchhhH-HHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--- Q lcl|Aclame:pro 262 AKYNPTTFSPVDSQ-TVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALE--- 337 (454) Q Consensus 262 ~~~~~l~~~~~d~~-~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~--- 337 (454) .++.++... +++ +++.++....+|++.=++|+..+|+..+ |- +.++. .+....+.-.+...+..|..-|. T Consensus 316 ~~~~q~~~~--~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~-N~-Sg~Al--~~~~~~l~~ka~~k~~~f~~~l~~~~ 389 (501) T protein:vir:25 316 VKAQAFPPA--SVEPYNLILEEMLQHVAMVAQISPAQVTGKMI-NV-SAEAL--AAAEANQQRKLAAKRESFGESWEQLL 389 (501) T ss_pred ceEEEeccc--ChHHHHHHHHHHHHHHHhhcCCChhhhccccC-Ch-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 666665432 333 7888999999999999999999986533 21 22222 22223333333333333222111 Q ss_pred -------C----cccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHH-HHhcCCCCC--Cccccccccccc-ccc Q lcl|Aclame:pro 338 -------T----GENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEAR-KRENLPPLA--GGDALYLQQQNY-SLE 402 (454) Q Consensus 338 -------~----~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R-~~~g~~p~~--~~d~~~~~~~~~-~~~ 402 (454) . .....+.+.+......+..+.++++.++.+.|+ +.-.+. .+.|+.+.+ ......-..... .++ T Consensus 390 rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~gi-s~et~~~~~~g~~~~~ie~~~~~~~e~~~~~~~~ 468 (501) T protein:vir:25 390 RLAAEMDDDPDTAADSGAEVLWRDTEARSFGAVVDGITKLASAGI-PIEHLLSMVPGMTQQTIQAIKDSLRGGEVKSLVD 468 (501) T ss_pred HHHHHHhCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCC-CHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHH Confidence 1 112356677778888899999999999999885 444443 345776421 000000000000 001 Q ss_pred ccccccccccCCCccC-cccCCCCCCcccCcccccccccc Q lcl|Aclame:pro 403 ALSRRDAREDPFASSG-KTASVPQAVAASDGNKAITETEH 441 (454) Q Consensus 403 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~ 441 (454) .....+..+...++.+ ...+.+....+.+ .+. T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~ 501 (501) T protein:vir:25 469 KLLSNEPAPVPPPPPQAAAQALNEGGVNGN-------GGA 501 (501) T ss_pred HhhccCcCCCCCCCCCCCccccccccCCCC-------CCC Confidence 1101000000000100 0001111111111 111 No 182 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=98.74 E-value=7.3e-08 Score=59.70 Aligned_cols=392 Identities=6% Similarity=-0.058 Sum_probs=176.8 Q ss_pred Ccchh-------------------hhhcccccccccc-Ccccchhhhhhhhhhccccc---cCC-ccc---cHHHHHhhH Q lcl|Aclame:pro 1 MWNLL-------------------RRTRKNQKSGRDV-REAGWTSLFQAVAEPFAGAW---QQG-VKA---DPEAVLSFH 53 (454) Q Consensus 1 m~n~f-------------------~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~-~~~---~~~~~~~~~ 53 (454) |+|++ .+........... +..-+...+.+--....... ..+ ... ....-+.++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~i~~~~~~~~~~~~~~~~~~~~~~ki~~~ 80 (479) T protein:vir:79 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINN 80 (479) T ss_pred CCCceecccceEeeccccCChhHHHHHHHHHHhhhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecc Confidence 33322 1110000000000 00000000100000000000 000 000 000112356 Q ss_pred HHHHHHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCcee Q lcl|Aclame:pro 54 AVFACISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIK 133 (454) Q Consensus 54 ~v~~~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~ 133 (454) ....+|+..+..+.+-|+.+...++ . ....+..++. | ........+....+.+|.+|..+..+.+|.+ T Consensus 81 ~~~~Ivd~~~~~l~g~p~~~~~~~~--~----~~~~~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~- 148 (479) T protein:vir:79 81 YHKLLVDQKVGYSVGNPIVFNADDD--N----LTKLLNDLLG--E---EFDDTITELYLNASNKGVEWLHPYINRKGEF- 148 (479) T ss_pred hHHHHHHHHHhhhhcCCceeccCCH--H----HHHHHHHHHh--c---CHHHHHHHHHHHHHhcCeEEEEEEeCCCCce- Confidence 6777888888888888877632111 1 1122333322 3 3455667778889999999998888888765 Q ss_pred EEEEecCcceEEEECCCC--ceeeE---Ee-ccccc-cccceeEEehhheEEeecCC----------------------- Q lcl|Aclame:pro 134 ELRILDWNRVEPLVADDG--EVFYR---IT-PDRNC-GITEAVTVPAREVIHDRFNC----------------------- 183 (454) Q Consensus 134 ~l~~l~~~~~~~~~~~~g--~~~~~---~~-~~~~~-~~~~~~~~~~~~vih~~~~~----------------------- 183 (454) .+..++|..+.+..+... ...+. |. ..... .......+....+.|++... T Consensus 149 ~i~~~~p~~~~~v~d~~~~~~~~~~ir~y~~~~~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (479) T protein:vir:79 149 KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHF 228 (479) T ss_pred EEEEEccceeEEEEeCCCCCceEEEEEEEEEeecCCceEEEEEEEeCCcEEEEEecCCcccccccccccccccccccccc Confidence 477789988888876432 11111 11 00000 00001112222222221100 Q ss_pred ----------------CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 184 ----------------FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGY 247 (454) Q Consensus 184 ----------------~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~ 247 (454) -.+...|.|-+..+...++..+.+.-...+.+...+.|-.++..-..... +..... T Consensus 229 ~~~~~~~~~~~vPvv~~~nn~~g~sd~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~---~~~~~~----- 300 (479) T protein:vir:79 229 RINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSL---QEFIDN----- 300 (479) T ss_pred cccccccCCCcccEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCcccc---ccchhh----- Confidence 00123577888877777777776665556666666777766544221111 111111 Q ss_pred cCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHH-------------HH Q lcl|Aclame:pro 248 TGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEAL-------------EQ 314 (454) Q Consensus 248 ~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~-------------~~ 314 (454) ...++++.++++.+++-+........+....+...+.|+..-++|..-.+.. ++- +.++. .. T Consensus 301 --~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~--gn~-Sg~Ai~~~~~~l~~k~~~~~ 375 (479) T protein:vir:79 301 --IRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT--GDK-SGVALKFLYSLLDLKCSKTE 375 (479) T ss_pred --hhhccceecCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCccccccccc--cch-hHHHHHHHHHHHHHHHHHHH Confidence 1234566666665555555544555677778888999999999887644322 221 11111 11 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-cccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccc Q lcl|Aclame:pro 315 QYYSQCLQTLIESIELLLDEALET-GENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALY 393 (454) Q Consensus 315 ~~~~~~i~P~~~~ie~~l~~~l~~-~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~ 393 (454) ..+...+.-+++.|...++..-.. .....+.+.+..-+..|..+.++.+.++ .|+++...+.++++.-. +.+.-. T Consensus 376 ~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~~~~~~a~~~~kl--~g~iS~et~l~~l~~v~--d~~~E~ 451 (479) T protein:vir:79 376 KKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVNDEL 451 (479) T ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccccceEEeCCCCCcCHHHHHHHHHHH--hccCcHHHHHHhCCCCC--CHHHHH Confidence 122233333333333333221111 1123456777777788899999998887 47898888888876522 211110 Q ss_pred cccccccccccccccccccCCCccCcccCCCCCCcccCc Q lcl|Aclame:pro 394 LQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDG 432 (454) Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 432 (454) ..+. ............-.....+.+++ . T Consensus 452 -----~ri~---~E~~~~~~~~~~~~~~~~~~~~e---~ 479 (479) T protein:vir:79 452 -----ERLK---KQEDTQKEYDDLIPNNQDGVIDE---T 479 (479) T ss_pred -----HHHH---HHHHHHHHHHhccCcccCCCcCc---C Confidence 0111 10000000000000000000010 0 No 183 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=98.73 E-value=7.5e-08 Score=59.63 Aligned_cols=393 Identities=11% Similarity=0.011 Sum_probs=176.0 Q ss_pred Ccchhhhhcccccccccc-----Ccccchhhhhhh--------------hhhccccc---------cCCcccc---HHHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDV-----REAGWTSLFQAV--------------AEPFAGAW---------QQGVKAD---PEAV 49 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~-----~~~~~~~~~~~~--------------~~~~~~~~---------~~~~~~~---~~~~ 49 (454) |||.|+.-...+-.+... ...........+ ...+-+-. ....... ...- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~k 80 (474) T protein:vir:97 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDKPDWR 80 (474) T ss_pred CcccccccCCCchhhHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhccccccccccCcce Confidence 999987654332111110 000111111000 00000000 0000000 0001 Q ss_pred HhhHHHHHHHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC Q lcl|Aclame:pro 50 LSFHAVFACISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR 129 (454) Q Consensus 50 ~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~ 129 (454) +..+....+++..++.+.+-|+.+...++ .....+..++. | +.......+..+.+.+|.+|+.+..+.+ T Consensus 81 i~~n~~k~Ivd~~~~~l~g~p~~~~~~d~------~~~~~l~~~~~--n---~~~~~~~e~~~~~~~~G~~~~~~~~d~~ 149 (474) T protein:vir:97 81 ITTNFHQNLVDQKVSYVASKPVTYSCEDE------NVLKVIHDVLD--T---RWDNKLIDILTATSNKGIDWLQVYINEN 149 (474) T ss_pred eecchHHHHHHHHHhhhhcCCceeccCcH------HHHHHHHHHHh--c---cHHHHHHHHHHHHhhcCceEEEEEecCC Confidence 22456677888888888888887632111 11222333332 2 2445566678889999999999888888 Q ss_pred CceeEEEEecCcceEEEECCC--CceeeEEeccccccccceeEEehhh-------------------------------- Q lcl|Aclame:pro 130 GQIKELRILDWNRVEPLVADD--GEVFYRITPDRNCGITEAVTVPARE-------------------------------- 175 (454) Q Consensus 130 G~~~~l~~l~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 175 (454) |.+ .+..++|..+.+..+.. +...+.+..+..........+..+. T Consensus 150 ~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g 228 (474) T protein:vir:97 150 GEM-KLFRVPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWG 228 (474) T ss_pred Cee-EEEEEcccceEEEEcCCCCCceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCC Confidence 865 57778999998887653 2221111100000000001111111 Q ss_pred ---eEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCccc Q lcl|Aclame:pro 176 ---VIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENA 252 (454) Q Consensus 176 ---vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~ 252 (454) +++++. ...|.|-+..+...++..+.+.-...+.+...+.|..++.--.. +..+.+... ... T Consensus 229 ~vPvv~~~n-----n~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~g~~~---~~~~~~~~~-------~~~ 293 (474) T protein:vir:97 229 RVPFIAFKN-----NPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILKGYEG---EDLEEFMRG-------LKY 293 (474) T ss_pred ccceEEecC-----CcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCc---ccchhhhhh-------hhc Confidence 333331 23688888888888877776666656566666667666543221 111111111 123 Q ss_pred CCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHH-------------HHHHHH Q lcl|Aclame:pro 253 GKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALE-------------QQYYSQ 319 (454) Q Consensus 253 g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~-------------~~~~~~ 319 (454) .+++.+++|.++..+........+.+..+...+.|...-++|..-.+... ++- +..+.. ...+.. T Consensus 294 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~-~n~-Sg~Al~~~~~~l~~k~~~k~~~~~~ 371 (474) T protein:vir:97 294 YKAINVDGDGGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKFG-SAP-SGIALKFLYGNLDLKANKLKNKATV 371 (474) T ss_pred cceeeccCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCccccc-ccc-HHHHHHHHHHHHHHHHHHHHHHHHH Confidence 35666766666655555545556677778888889888888854322111 111 112211 112223 Q ss_pred HHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccc Q lcl|Aclame:pro 320 CLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNY 399 (454) Q Consensus 320 ~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~ 399 (454) .++.+++.|...++. ......+.+.++.-+..+..+.++ .+.++|+++...++++++.-. +.+.-+ . T Consensus 372 ~l~~~~~li~~~~~~---~~d~~~i~v~f~~~~p~~~~e~a~---~~~~~g~iS~et~l~~l~~v~--D~~~E~-----e 438 (474) T protein:vir:97 372 AIQELISFIIDFNNL---KTDVKDIEISFNFNRMMNDAEQSQ---IIAQSQYLSRETLVKSSPLVD--DYKAEL-----E 438 (474) T ss_pred HHHHHHHHHHHHhCC---CcccceeeEEeccCcccCHHHHHH---HHHHcCCCCHHHHHHhCCCCC--CHHHHH-----H Confidence 333333333332211 112233455555544555554444 455679999888888876532 211100 0 Q ss_pred cccccccccccccCCCccCcccCCCCCCcccCccccccc Q lcl|Aclame:pro 400 SLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITE 438 (454) Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 438 (454) .+...........+. -..........++.+ +....| T Consensus 439 ri~~E~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~e 474 (474) T protein:vir:97 439 RIEQEQMEYNKQLPN-LDDGGADGAQQQEGS--NNKESE 474 (474) T ss_pred HHHHHHHHHHhhccc-cCCCCCCCcccCCCC--cccccC Confidence 000000000000000 000000000111111 111111 No 184 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=98.73 E-value=7.5e-08 Score=59.63 Aligned_cols=393 Identities=11% Similarity=0.011 Sum_probs=176.0 Q ss_pred Ccchhhhhcccccccccc-----Ccccchhhhhhh--------------hhhccccc---------cCCcccc---HHHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDV-----REAGWTSLFQAV--------------AEPFAGAW---------QQGVKAD---PEAV 49 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~-----~~~~~~~~~~~~--------------~~~~~~~~---------~~~~~~~---~~~~ 49 (454) |||.|+.-...+-.+... ...........+ ...+-+-. ....... ...- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~k 80 (474) T protein:vir:94 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDKPDWR 80 (474) T ss_pred CcccccccCCCchhhHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhccccccccccCcce Confidence 999987654332111110 000111111000 00000000 0000000 0001 Q ss_pred HhhHHHHHHHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC Q lcl|Aclame:pro 50 LSFHAVFACISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR 129 (454) Q Consensus 50 ~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~ 129 (454) +..+....+++..++.+.+-|+.+...++ .....+..++. | +.......+..+.+.+|.+|+.+..+.+ T Consensus 81 i~~n~~k~Ivd~~~~~l~g~p~~~~~~d~------~~~~~l~~~~~--n---~~~~~~~e~~~~~~~~G~~~~~~~~d~~ 149 (474) T protein:vir:94 81 ITTNFHQNLVDQKVSYVASKPVTYSCEDE------NVLKVIHDVLD--T---RWDNKLIDILTATSNKGIDWLQVYINEN 149 (474) T ss_pred eecchHHHHHHHHHhhhhcCCceeccCcH------HHHHHHHHHHh--c---cHHHHHHHHHHHHhhcCceEEEEEecCC Confidence 22456677888888888888887632111 11222333332 2 2445566678889999999999888888 Q ss_pred CceeEEEEecCcceEEEECCC--CceeeEEeccccccccceeEEehhh-------------------------------- Q lcl|Aclame:pro 130 GQIKELRILDWNRVEPLVADD--GEVFYRITPDRNCGITEAVTVPARE-------------------------------- 175 (454) Q Consensus 130 G~~~~l~~l~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 175 (454) |.+ .+..++|..+.+..+.. +...+.+..+..........+..+. T Consensus 150 ~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g 228 (474) T protein:vir:94 150 GEM-KLFRVPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWG 228 (474) T ss_pred Cee-EEEEEcccceEEEEcCCCCCceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCC Confidence 865 57778999998887653 2221111100000000001111111 Q ss_pred ---eEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCccc Q lcl|Aclame:pro 176 ---VIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENA 252 (454) Q Consensus 176 ---vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~ 252 (454) +++++. ...|.|-+..+...++..+.+.-...+.+...+.|..++.--.. +..+.+... ... T Consensus 229 ~vPvv~~~n-----n~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~g~~~---~~~~~~~~~-------~~~ 293 (474) T protein:vir:94 229 RVPFIAFKN-----NPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILKGYEG---EDLEEFMRG-------LKY 293 (474) T ss_pred ccceEEecC-----CcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCc---ccchhhhhh-------hhc Confidence 333331 23688888888888877776666656566666667666543221 111111111 123 Q ss_pred CCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHH-------------HHHHHH Q lcl|Aclame:pro 253 GKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALE-------------QQYYSQ 319 (454) Q Consensus 253 g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~-------------~~~~~~ 319 (454) .+++.+++|.++..+........+.+..+...+.|...-++|..-.+... ++- +..+.. ...+.. T Consensus 294 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~-~n~-Sg~Al~~~~~~l~~k~~~k~~~~~~ 371 (474) T protein:vir:94 294 YKAINVDGDGGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKFG-SAP-SGIALKFLYGNLDLKANKLKNKATV 371 (474) T ss_pred cceeeccCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCccccc-ccc-HHHHHHHHHHHHHHHHHHHHHHHHH Confidence 35666766666655555545556677778888889888888854322111 111 112211 112223 Q ss_pred HHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccc Q lcl|Aclame:pro 320 CLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNY 399 (454) Q Consensus 320 ~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~ 399 (454) .++.+++.|...++. ......+.+.++.-+..+..+.++ .+.++|+++...++++++.-. +.+.-+ . T Consensus 372 ~l~~~~~li~~~~~~---~~d~~~i~v~f~~~~p~~~~e~a~---~~~~~g~iS~et~l~~l~~v~--D~~~E~-----e 438 (474) T protein:vir:94 372 AIQELISFIIDFNNL---KTDVKDIEISFNFNRMMNDAEQSQ---IIAQSQYLSRETLVKSSPLVD--DYKAEL-----E 438 (474) T ss_pred HHHHHHHHHHHHhCC---CcccceeeEEeccCcccCHHHHHH---HHHHcCCCCHHHHHHhCCCCC--CHHHHH-----H Confidence 333333333332211 112233455555544555554444 455679999888888876532 211100 0 Q ss_pred cccccccccccccCCCccCcccCCCCCCcccCccccccc Q lcl|Aclame:pro 400 SLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITE 438 (454) Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 438 (454) .+...........+. -..........++.+ +....| T Consensus 439 ri~~E~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~e 474 (474) T protein:vir:94 439 RIEQEQMEYNKQLPN-LDDGGADGAQQQEGS--NNKESE 474 (474) T ss_pred HHHHHHHHHHhhccc-cCCCCCCCcccCCCC--cccccC Confidence 000000000000000 000000000111111 111111 No 185 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=98.73 E-value=7.8e-08 Score=59.56 Aligned_cols=395 Identities=10% Similarity=-0.020 Sum_probs=171.8 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) --.++.+......... .+..-+.....+--............... -+..++....|+..+..+-+.|+.+-..++ T Consensus 18 ~~~~l~~~i~~~~~~~-~r~~~~~~yy~g~~~i~~~~~~~~~~~~~--ki~~n~~~~ivd~~~~~l~g~~~~~~~~d~-- 92 (453) T protein:vir:39 18 TNEVVTKFMEKHRLEV-ARYEYLKNMYRGIMAIDAEPTKDLWKPDN--RLTVNFTKYIVDTFTGYFNGIPVKKSHSDK-- 92 (453) T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHhhccCchhcCCCccccCccc--eeecchHHHHHHHHhhhhcccCceeccCCh-- Confidence 0001111110000000 00000000111100000111100000011 123466778888888888888876642111 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCc--eeeEEe Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE--VFYRIT 158 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~--~~~~~~ 158 (454) . ....+..++.. | ........+..+.+.+|.+|+.+..+.+|.+ .+..++|..+.+..+.... ..+.+. T Consensus 93 ---~-~~~~l~~i~~~-N---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir 163 (453) T protein:vir:39 93 ---E-TLSKLQEFDNL-N---DMEDEESELAKMACIYGRAFELLYQNEETQT-NVIYNTPENMFMVYDDTIKQEPLFAVR 163 (453) T ss_pred ---H-HHHHHHHHHHh-c---ChhHHHHHHHHHHhhcCeEEEEEEecCCCce-EEEEEcccceEEEecCCCCCeEEEEEE Confidence 0 11223333333 2 3445677788899999999999988888875 4667888888888764221 111111 Q ss_pred ccccccccc-eeEEehh-------------------------heEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHH Q lcl|Aclame:pro 159 PDRNCGITE-AVTVPAR-------------------------EVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENST 212 (454) Q Consensus 159 ~~~~~~~~~-~~~~~~~-------------------------~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~ 212 (454) .+....... ...+.++ .|++++ +...|.|-+..+...++..+.+.--.. T Consensus 164 ~~~~~~~~~~~~~yt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~sd~e~v~~liDa~~~~~s~~~ 238 (453) T protein:vir:39 164 YGYDDDYKLYGEVYTKETTYALNGTMGFYNMTEQAPNPFDDLPVVEFY-----FNEERMSIFESVISLVNAFNKAISEKA 238 (453) T ss_pred EEEeCCeEEEEEEEeCCeEEEEEecCCceeeecccccCCCceeEEEec-----CCCCCCcchhhhHHHHHHHHHHHHHHH Confidence 000000000 0001111 123332 123677877777777766666555555 Q ss_pred HHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 213 SFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFR 292 (454) Q Consensus 213 ~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fg 292 (454) +.+...+.|..++.- ...+++....++..- .+.-. .....+++.++.-+........+.+..+...+.|+..-+ T Consensus 239 ~~~~~~~~p~~~~~g-~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~I~~~s~ 312 (453) T protein:vir:39 239 NDVDYFSDQYLTFLG-AAVEEEDLKNIRSNR--VINYY---GESSEAKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTM 312 (453) T ss_pred HHHHHhhCceeeeec-CCCCchhhhhhhhcc--eeeec---CCCCCCCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhC Confidence 555666667666543 333444444332210 00000 001112333444444444455667778888889988888 Q ss_pred cchhhhcccccccccCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHH Q lcl|Aclame:pro 293 VPAYKIGVGQPPSSDNVEALEQ-------------QYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERR 359 (454) Q Consensus 293 vp~~~lg~~~~~~~~n~e~~~~-------------~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~ 359 (454) +|..-.+.. ++- +.++... ..+..++..+++.+...++..-.......+.+.+..-+..|..+. T Consensus 313 ~p~~~~~~~--gn~-Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~v~f~~~~p~~~~~~ 389 (453) T protein:vir:39 313 VANISDESF--GSS-SGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCELSTNVSNKEAWKDIEYTFTRNEPKDIKEQ 389 (453) T ss_pred Ccccccccc--cCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCcCHHHH Confidence 885432221 111 1122211 122333333333333332221111122345666777778889999 Q ss_pred HHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccccccc Q lcl|Aclame:pro 360 MKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITET 439 (454) Q Consensus 360 ~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 439 (454) ++.+.++ .|+++..-+.++++.-+.+..+.-. +........... ........+ .......++ + T Consensus 390 a~~~~kl--~g~is~et~l~~l~~v~D~~~E~~r-------i~~E~~~~~~~~-~~~~~~~~~-~~~~~~~~~------~ 452 (453) T protein:vir:39 390 AETANIL--MGITSQETALSVISVIPDVQAEMEK-------IKKEEASTAIFD-KDKQPSEKG-TDTVVPETN------E 452 (453) T ss_pred HHHHHHH--hccCChHHHHHhCCCCCCHHHHHHH-------HHHHHHHHHHHH-HhccCCCCC-CCCCCCCcC------C Confidence 9998887 5789988888888653321111000 100000000000 000000000 000000111 1 Q ss_pred c Q lcl|Aclame:pro 440 E 440 (454) Q Consensus 440 ~ 440 (454) + T Consensus 453 e 453 (453) T protein:vir:39 453 E 453 (453) T ss_pred C Confidence 1 No 186 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=98.70 E-value=9.8e-08 Score=59.01 Aligned_cols=398 Identities=10% Similarity=-0.002 Sum_probs=177.5 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccc---c--CCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEe Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAW---Q--QGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQ 75 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~ 75 (454) ...++.+......... .+..-...++.+--..+.... . ......+..-+.++....+|+..++.+-+-|+.+.. T Consensus 36 ~~~~i~~~i~~~~~~~-~r~~~l~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~G~p~~~~~ 114 (483) T protein:vir:12 36 LEEMIVRYIKQHLEKL-PEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH 114 (483) T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhccccccccccccccccccccccccccccccchHHHHHHHHhhhhcccCceecc Confidence 1112222211110000 000000011111000000000 0 000000111133567778889998888888877632 Q ss_pred ccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCC--Cce Q lcl|Aclame:pro 76 TDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADD--GEV 153 (454) Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~--g~~ 153 (454) .++ . ....+..++. | +.......+..+.+.+|.+|+.+-.+.+|.+ .+..++|..+.+..+.. +.. T Consensus 115 ~d~--~----~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~y~~v~~d~d~~~-~i~~~~p~~~~~v~d~~~~~~~ 182 (483) T protein:vir:12 115 TDD--E----VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEEL 182 (483) T ss_pred CCh--H----HHHHHHHHHh--c---cHHHHHHHHHHHHhhCCeEEEEEEEcCCCce-EEEEEcccceEEEEcCCCCCce Confidence 111 1 1112333333 2 2334556677889999999999988888875 57889999998887632 222 Q ss_pred eeEEeccccccccceeEEehhheEEeecC---------------------C---------CcCcccccchhhhhHhHHHH Q lcl|Aclame:pro 154 FYRITPDRNCGITEAVTVPAREVIHDRFN---------------------C---------FFHPLIGLPPVYAAGLAATQ 203 (454) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~vih~~~~---------------------~---------~~~~~~G~s~l~~~~~~i~~ 203 (454) .+.+..+..........+.+..+.|+... + -.+...|.|-+..+...++. T Consensus 183 ~~~ir~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa 262 (483) T protein:vir:12 183 EAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDA 262 (483) T ss_pred EEEEEEEEeecceEEEEEecCeEEEEEEeCCeeeecccccccccccccccCCCCccceEEecCCCCCCCchhhHHHHHHH Confidence 21111100000000011111222111100 0 00123577878777777777 Q ss_pred HHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHH Q lcl|Aclame:pro 204 GHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMT 283 (454) Q Consensus 204 ~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~ 283 (454) .+.+.--..+.+...+.|..+++-- +.+..+.....++ ..+++.++++.++..+.....+..+....+.. T Consensus 263 ~d~~~S~~~~~~~~~~~~~lv~~g~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 332 (483) T protein:vir:12 263 YNRRLSDLSNTFKDSNELTYVLTNY---DDQELPEFKRLLR-------YYGAIKVSDNGGVDTIQVEVPVENSKKYLDEL 332 (483) T ss_pred HHHHHHHHHHHHHHhcCceeeeecC---CcccchhHHHhhh-------hccccccCCCCcceEEeecCCHHHHHHHHHHH Confidence 7666555555566666676665432 2222222222221 22344455555555554444555677788888 Q ss_pred HHHHHHHhccchhhhcccccccccCHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchh Q lcl|Aclame:pro 284 AEIVCSVFRVPAYKIGVGQPPSSDNVEALE-------------QQYYSQCLQTLIESIELLLDEALETGENESTEFDVTT 350 (454) Q Consensus 284 ~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~-------------~~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~ 350 (454) .+.|+..-++|....+... +|- +.++.. ...+...++-+++.|...++ .......+.+.+.. T Consensus 333 ~~~I~~~s~~p~~~~~~~~-~n~-Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~li~~~~~---~~~~~~~i~v~f~~ 407 (483) T protein:vir:12 333 YQKIMLFGQAVDFSSDKFG-SAP-SGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD---IKGEHKDVDISFNY 407 (483) T ss_pred HHHHHHHhCCCCCCccccc-cCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCccceeeEEeCC Confidence 8999999999875433211 111 112211 11122223333333332221 12233456677777 Q ss_pred hhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCccc Q lcl|Aclame:pro 351 LLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAAS 430 (454) Q Consensus 351 l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (454) -+..|..+.++.+.++ .|+++..-+.++++.-..+ +.-+ ..+........... + ..... ..+...+.+ T Consensus 408 ~~p~~~~~~a~~~~kl--~GiiS~et~~~~~~~v~d~--~~E~-----~ri~~E~~~~~~~~-~-~~~~~-~~d~~~~~~ 475 (483) T protein:vir:12 408 NKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDL--QAEL-----ERIEQEQMEYNKQL-P-NLDDG-GADGAQQQE 475 (483) T ss_pred CCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCH--HHHH-----HHHHHHHHHHHhhc-c-ccccc-ccCCcccCC Confidence 7888999999999988 5889988888887653211 1100 00000000000000 0 00000 001111111 Q ss_pred Cccccccc Q lcl|Aclame:pro 431 DGNKAITE 438 (454) Q Consensus 431 d~~~~~~~ 438 (454) +.+.+.+| T Consensus 476 ~~~~~e~e 483 (483) T protein:vir:12 476 RSNNKESE 483 (483) T ss_pred CCCcccCC Confidence 12222222 No 187 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=98.70 E-value=1e-07 Score=58.94 Aligned_cols=406 Identities=8% Similarity=-0.025 Sum_probs=174.8 Q ss_pred Ccchhhhhcccccc-ccccCcc---------------cchhhhhhhh----hhccccc-cCCccccHHHHHhhHHHHHHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQKS-GRDVREA---------------GWTSLFQAVA----EPFAGAW-QQGVKADPEAVLSFHAVFACI 59 (454) Q Consensus 1 m~n~f~r~~~~~~~-~~~~~~~---------------~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~v~~~i 59 (454) .||.+.+..--... .....+. .+.....+.. ..+.... ..........-+.++....+| T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~yY~g~~~~i~~~~~~~~~~~~~~~~ki~~n~~~~iv 91 (481) T protein:vir:10 12 KFSPLANDDFVVSDLAELLKEENLRNFISRHQTEQVPRLEMLESYYLNRNTDILAGERRLQKYGDKADHRAVHNYAKYVS 91 (481) T ss_pred hcccccCceeeeecchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCccccccccccccceeecchHHHHH Confidence 11111110000000 0000000 0000000000 0000000 000000001113456777888 Q ss_pred HHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEec Q lcl|Aclame:pro 60 SLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILD 139 (454) Q Consensus 60 ~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~ 139 (454) +..+..+.+-|+.+...++ .....+..++.+ | ....+...+..+.+.+|.+|+.+..+.+|.+ .+..++ T Consensus 92 d~~~~~l~g~~~~~~~~d~------~~~~~l~~~~~~-n---~~~~~~~~~~~~~~~~G~~~~~~~~d~dg~~-~i~~~~ 160 (481) T protein:vir:10 92 RFIVGYLTGNPITITHQDN------QTNDKIIELNDL-N---DADEVNSDLALNLSIYGRAYEIVYRDFEDRD-TFKVLD 160 (481) T ss_pred HHHHhhhccCCceEecCCh------hHHHHHHHHHHh-c---ChhHHHHHHHHHHHhcCeEEEEEEeCCCCeE-EEEEEc Confidence 9988888888876542111 112233444433 2 3556788889999999999999888888876 577889 Q ss_pred CcceEEEECCCC--ceeeE---Eec--cccccccceeEEehhheEEeecCC--------------------CcCcccccc Q lcl|Aclame:pro 140 WNRVEPLVADDG--EVFYR---ITP--DRNCGITEAVTVPAREVIHDRFNC--------------------FFHPLIGLP 192 (454) Q Consensus 140 ~~~~~~~~~~~g--~~~~~---~~~--~~~~~~~~~~~~~~~~vih~~~~~--------------------~~~~~~G~s 192 (454) |..+.+..+... ...+. |.. ...........+..+.+.++.... -.+...|.| T Consensus 161 p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~~ 240 (481) T protein:vir:10 161 PKSTFVVYDQTLDKKVVAGVRYFEKQDKDKVPVQHVEVYTTDKIYYIEIKGGTYHRVEEVEHYYNDVPIIEYLNDQFKQG 240 (481) T ss_pred ccceEEEEcCCCCCceEEEEEEEEEeeCCCceEEEEEEEecCeEEEEEecCCceeecccccccCCceeEEEeecCCCCCC Confidence 999988877542 21111 110 000000000112222222222110 001235777 Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccch Q lcl|Aclame:pro 193 PVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPV 272 (454) Q Consensus 193 ~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~ 272 (454) -+..+...++.......-....+...+.|..++......+++..+.++..-.-.. .... .....+++.++.-+..... T Consensus 241 ~~~~v~~lida~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~ 318 (481) T protein:vir:10 241 DFENVIALIDLYDSAQSDTANYMTDLNDAMLAIIGNVDLDSEDAKAFRDANMIHL-EPGT-NANGSEGKAEVKYVYKQYD 318 (481) T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcCceeEeecCcCCCccchhhhhhccceec-cccc-cccCCCCCcceeEEeecCC Confidence 7666666666555544444444555556776665433334444333332111000 0000 0011123344444444344 Q ss_pred hhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHH----HHHHHHHHH-------hh----c Q lcl|Aclame:pro 273 DSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLI----ESIELLLDE-------AL----E 337 (454) Q Consensus 273 d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~----~~ie~~l~~-------~l----~ 337 (454) ...+.+..+...+.|+..-++|....+... ++- +.++....+ ..+.-.+ ..++..+.+ .+ . T Consensus 319 ~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~-~n~-Sg~Al~~~~--~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~ 394 (481) T protein:vir:10 319 VAGVEAYKKRLQNDIHKYTNTPDLNDEQFS-GVQ-SGESMKYKL--FGLEQVRAIKERLFKKGLMKRYKLLLNNVNLTGL 394 (481) T ss_pred HHHHHHHHHHHHHHHHHHhCCccccccccc-ccc-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC Confidence 556778889999999999999987665432 221 222222211 1111111 112222211 11 0 Q ss_pred Cc-ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCc Q lcl|Aclame:pro 338 TG-ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFAS 416 (454) Q Consensus 338 ~~-~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (454) .. ....+.+.+..-...|..+.++.+.++. |+++...+.+++++-. +.+.-+ ..+........+...... T Consensus 395 ~~~~~~~i~v~f~~~~~~~~~~~a~~~~kl~--g~is~et~~~~l~~i~--d~~~E~-----~ri~~E~~~~~~~~~~~~ 465 (481) T protein:vir:10 395 KQHNYAELTITFTPNLPKSMMESINAFNALS--GGVSESTRLSLLDFID--NPKEEL-----EKMQEEEAQREKQADKRG 465 (481) T ss_pred CccccceeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCCC--CHHHHH-----HHHHHHHHHHHhhhhhcc Confidence 11 1234567777778889999999988884 7888877888876532 111110 001000000001100111 Q ss_pred cCcccCCCCCCcccCccc Q lcl|Aclame:pro 417 SGKTASVPQAVAASDGNK 434 (454) Q Consensus 417 ~~~~~~~~~~~~~~d~~~ 434 (454) .+. ..+...+.+|++. T Consensus 466 ~~~--~~~~~~~~dd~~g 481 (481) T protein:vir:10 466 YGE--AFENHLNVDDSNG 481 (481) T ss_pred CCc--cCCCCCCCCCCCC Confidence 111 1111111122221 No 188 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=98.68 E-value=6.6e-08 Score=59.96 Aligned_cols=376 Identities=10% Similarity=-0.006 Sum_probs=170.8 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhh-hccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAE-PFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) |.+.+.+....-. ....+..+--. ...+... ..-.......+.+...+|+..++.+--..|.. ++ T Consensus 12 l~~~~~~~~~r~~--------~l~~Yy~G~~~i~~~~~~~--~~~~~~~k~~~n~~~~ivd~~~~~l~~~g~~~----~d 77 (441) T protein:vir:80 12 MYDRIQRLSSWHC--------CIEGYYEGSNRVRDLGVAI--PPELQRVQTVVSWPGIAVDALEERLDWLGWTN----GD 77 (441) T ss_pred HHHHHHHHHHHHH--------HHHHHHhcCCcchhcCccc--chhhhhhhhhcchHHHHHHHHHhhhccccccC----CC Confidence 2222221110000 00011111000 0000000 00001112234455667776666553222221 11 Q ss_pred ccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCC-cee--eE Q lcl|Aclame:pro 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDG-EVF--YR 156 (454) Q Consensus 80 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g-~~~--~~ 156 (454) ...+..++.. | +...+...+..+++.+|.||+.+..+.+|.+ .+.+++|..+.+.++... ... +. T Consensus 78 -------~~~l~~i~~~-n---~~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~~ 145 (441) T protein:vir:80 78 -------GYGLDGVYAA-N---RLATASCDVHLDALIFGLSFVAIIPHGDGTV-SVRPQSPKNCTGKFSADGSRLDAGLV 145 (441) T ss_pred -------hHHHHHHHHh-c---CHHHHHHHHHHHHhhcCeeEEEEEeCCCCce-EEEEEccceEEEEEeCCCCceeEEEE Confidence 1112333322 2 4567788889999999999999988888876 578899999998876532 111 00 Q ss_pred Eeccc-c------------------ccc-------cceeEEehhheEEeecCCCcCcccccchhhh-hHhHHHHHHHHHH Q lcl|Aclame:pro 157 ITPDR-N------------------CGI-------TEAVTVPAREVIHDRFNCFFHPLIGLPPVYA-AGLAATQGHHIQE 209 (454) Q Consensus 157 ~~~~~-~------------------~~~-------~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~-~~~~i~~~~~~~~ 209 (454) ++... . ... ..+..+..-.|+||.........+|.|-+.. +...++..+...- T Consensus 146 ~~~~~~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~l~~~v~~liDa~~~~~s 225 (441) T protein:vir:80 146 VQQTCDPEVVEAELLLPDVIVQVERRGSREWVEVDRIPNVLGAVPLVPIVNRRRTSRIDGRSEITRSIRAYTDEAVRTLL 225 (441) T ss_pred EEEEecCceEEEEEEecCeEEEEEEcCCcceeeccccccCCCceeEEEeeccccCCccCCcccchhhHHHHHHHHHHHHH Confidence 00000 0 000 0111122333577776666667788886543 3444444444433 Q ss_pred HHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCC-----CceeeeccccchhhHHHHHHHHHH Q lcl|Aclame:pro 210 NSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSN-----GAKYNPTTFSPVDSQTVEQLKMTA 284 (454) Q Consensus 210 ~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~-----g~~~~~l~~~~~d~~~~e~~~~~~ 284 (454) -........+.|..++.- ...++...+. ++. ..++++.+++ ++++..+.....+ .+++.++... T Consensus 226 ~~~~~~~~~~~~~~~i~G-~~~~~~~~~~----~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~i 294 (441) T protein:vir:80 226 GQSVNRDFYAYPQRWVTG-VSADEFSQPG----WVL-----SMASVWAVDKDDDGDTPNVGSFPVNSPT-PYSDQMRLLA 294 (441) T ss_pred HHHHHHHhhcCceeeeec-CCccccccch----hhh-----cccccccCCCCCCCCcceeEecCccchH-HHHHHHHHHH Confidence 333344444556555532 1222221111 111 1233444432 2444444433222 3778888899 Q ss_pred HHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cC------cccceeeecc Q lcl|Aclame:pro 285 EIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEAL----------ET------GENESTEFDV 348 (454) Q Consensus 285 ~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l----------~~------~~~~~~~f~~ 348 (454) ..|+..-++|+..+|+... +.++.++....+ ..+.-.+...+..+...| +. .....+.+.+ T Consensus 295 ~~~~~~~~~p~~~~g~~~~-~~~Sg~Al~~~~--~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~~i~~~f 371 (441) T protein:vir:80 295 QLTAGEAAVPERYFGFITS-NPPSGEALAAEE--SRLVKRAERRQTSFGQGWLSVGFLAAKALDSRVDEADFFGDVGLRW 371 (441) T ss_pred HHHhcccCCCHHHhccCCC-cchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeeeEEe Confidence 9999999999999987543 222333332222 122222222222222111 00 0123556777 Q ss_pred hhhhhcCHHHHHHHHHHHHhCCCcC--HHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCC Q lcl|Aclame:pro 349 TTLLRMDSERRMKTLGDAVKNTLLT--PNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQA 426 (454) Q Consensus 349 ~~l~~~d~~~~~~~~~~~~~~g~~T--~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (454) ...+..+..+.++.+.+++++|++. ...+++.+|+.+.+-. +. ..... ...+ .... .......++ T Consensus 372 ~~~~~~~~~e~ad~~~kl~~~g~~~~s~~~~~~~l~~~~~e~~-~~---------~~e~~-e~~~-~~~~-~~~~~~~~~ 438 (441) T protein:vir:80 372 RDASTPTRAATADAVTKLVGAGILPADSRTVLEMLGLDDVQVE-AV---------MRHRA-ESSD-PLAV-LAGAISRQT 438 (441) T ss_pred CCCCCcCHHHHHHHHHHHHhcCcccccHHHHHHhCCCCHHHHH-HH---------HHHHH-HHHH-HHHH-Hhhhhhccc Confidence 7788899999999999999999754 3346777777542211 10 00000 0000 0000 000000000 Q ss_pred Ccc Q lcl|Aclame:pro 427 VAA 429 (454) Q Consensus 427 ~~~ 429 (454) ++- T Consensus 439 ~~~ 441 (441) T protein:vir:80 439 NEV 441 (441) T ss_pred ccC Confidence 000 No 189 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=98.68 E-value=1.1e-07 Score=58.71 Aligned_cols=361 Identities=11% Similarity=0.044 Sum_probs=162.8 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHH--HH--HhhHHHHHHHHHHHHhhcccceEEEec Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPE--AV--LSFHAVFACISLISQDIAKMRLRLMQT 76 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~v~~~i~~ia~~va~~~~~~~~~ 76 (454) -.+.|.+.......... -...+..+-... -..+..+..+ .. +...+...+|+.+++.+.=-.|.+ T Consensus 5 ~i~~L~~~~~~~~~r~~----~~~~yy~g~~~~----~~~~~~~p~~~~~~~~~v~nw~~~~Vd~~a~rl~~~Gf~~--- 73 (422) T protein:vir:97 5 GMGYLRRKLALFKTGVD----KRYRYYAMDDRD----DTRSIVMPNNVREMYRSVLEWTAKGVDSLADRIIFREFTN--- 73 (422) T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHhcCCCh----hhcCccccHHHHHHHHhhcchhHHHHHHHHhccccceeeC--- Confidence 11222111111100000 000111100000 0000111111 11 112455566666666443333321 Q ss_pred cccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC-CCceeEEEEecCcceEEEECCCCcee- Q lcl|Aclame:pro 77 DAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA-RGQIKELRILDWNRVEPLVADDGEVF- 154 (454) Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~-~G~~~~l~~l~~~~~~~~~~~~g~~~- 154 (454) .++ .++.++.. |. .......+..+.+.+|.||+++..+. +|.| .+.+++|..+.+.+|...... T Consensus 74 -~d~--------~l~~~w~~-N~---ld~~~~~~~~~al~~G~sf~~v~~~~~~~~p-~i~~~sp~~~~~i~D~~~~~~~ 139 (422) T protein:vir:97 74 -DDF--------NAWEIFKA-NN---PDIFFDTAIQSALIASCCFVYIMPGAEDGLP-KMQVIEASKATGILDPTTFLLT 139 (422) T ss_pred -Cch--------hHHHHHHh-cC---hHHHHHHHHHHHHHhcceeEEEeeCCCCCee-EEEEechhhEEEEEeCCCCcce Confidence 111 13333333 33 23345577888999999999998764 5655 588899999998887532111 Q ss_pred --eEEec-cccccc-----------------c----ceeEEehhheEEeecCCCcCcccccchh-hhhHhHHHHHHHHHH Q lcl|Aclame:pro 155 --YRITP-DRNCGI-----------------T----EAVTVPAREVIHDRFNCFFHPLIGLPPV-YAAGLAATQGHHIQE 209 (454) Q Consensus 155 --~~~~~-~~~~~~-----------------~----~~~~~~~~~vih~~~~~~~~~~~G~s~l-~~~~~~i~~~~~~~~ 209 (454) +.+.. +..... + .+..+..--|++|.+.......+|.|.+ ..+...++..+...- T Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~ 219 (422) T protein:vir:97 140 EGYAILESDSNGNPTLEAYFTDKDIWYYPKKGKPYNIKNPTGHPLLVPIIHRPDAVRPFGRSRITKAGMYHQKAAKRTLE 219 (422) T ss_pred eeEEEEEecCCCcEEEEEEEcCceEEEEcCCCccccccCCCCCcceEEecccCCCccccCccccchhHHHHHHHHHHHHH Confidence 11110 000000 0 0111222235677666666677888865 334444444443333 Q ss_pred HHHHHHhccCCcceeEe-cCccCCHHHHHHHHHHHHHHhcCcccCCceecCC-----CceeeeccccchhhHHHHHHHHH Q lcl|Aclame:pro 210 NSTSFFRNGGRPSGVIE-IPGSITEENAKKLKSNWDSGYTGENAGKTAILSN-----GAKYNPTTFSPVDSQTVEQLKMT 283 (454) Q Consensus 210 ~~~~~~~ng~~p~~~l~-~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~-----g~~~~~l~~~~~d~~~~e~~~~~ 283 (454) .......-.+.|..++. ++.+ ....+.++.. .++++.++. +.++.++....-+ .|++.++.. T Consensus 220 ~~~~~~e~~a~pqr~i~G~d~d--~~~~~~~~~~---------~~~i~~~~~de~~~~~~v~q~~~~~l~-~~~~~l~~~ 287 (422) T protein:vir:97 220 RAEVTAEFYSFPQKYVLGMDPD--AKPMEKWRAT---------VSTLLEISKDEDGDKPTVGQFTTASMA-PFMEHLKMY 287 (422) T ss_pred HHHHHHHHhcchhhhhcccCcc--cccCchhhhh---------hhhhhccCCCCCCCcceeeecCCCChh-HHHHHHHHH Confidence 33333333344554442 2211 1112222222 224444432 3456555543332 489999999 Q ss_pred HHHHHHHhccchhhhcccccccccCHHHHHH---HHHHHHHHHHHHHHHHHHHHh----h--cCc------ccceeeecc Q lcl|Aclame:pro 284 AEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ---QYYSQCLQTLIESIELLLDEA----L--ETG------ENESTEFDV 348 (454) Q Consensus 284 ~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~---~~~~~~i~P~~~~ie~~l~~~----l--~~~------~~~~~~f~~ 348 (454) ..+|+.+=++|++.+|+... |-++.++... .+... +.-....+...+.+. + ... ....+.+.+ T Consensus 288 ~~~~a~~s~lP~~~lg~~~~-NpsSa~Ai~a~~~~L~~k-a~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~~~w 365 (422) T protein:vir:97 288 ASLFAGGSGLTLDDLGFPSD-NPSSVESIKAAHENLRAA-GRKAQRSFSSGFLNVAYIAVCLRDEFPYLRNQFMDTVIKW 365 (422) T ss_pred HHHHhcccCCCHHHhccccC-chhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhccceEEE Confidence 99999999999999998654 3233333221 11111 111112222222211 1 111 112344555 Q ss_pred hhhhhcC---HHHHHHHHHHHHhC--CCcCHHHHHHHhcCCCCCCccccccccccccccc Q lcl|Aclame:pro 349 TTLLRMD---SERRMKTLGDAVKN--TLLTPNEARKRENLPPLAGGDALYLQQQNYSLEA 403 (454) Q Consensus 349 ~~l~~~d---~~~~~~~~~~~~~~--g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~ 403 (454) ......+ ..+.++.+.+++++ |++..+-+++++|+...+.. ...+ .-...++ T Consensus 366 ~p~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~~~~~~~-~~~~--~~~~~d~ 422 (422) T protein:vir:97 366 EPLFEADANMLTLVGDGAIKLNQAIPGFMDADVIRDLTGVKGADKP-IPAI--TEVTTDG 422 (422) T ss_pred ccCCCCChHHHHHHHHHHHHHHhhccccccHHHHHHHcCCCchhHH-HHHH--HhhhccC Confidence 5444455 45567788888888 67788889999999543211 0110 0011111 No 190 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=98.67 E-value=1.3e-07 Score=58.38 Aligned_cols=398 Identities=11% Similarity=-0.004 Sum_probs=173.3 Q ss_pred cchh------------------hhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHH Q lcl|Aclame:pro 2 WNLL------------------RRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLIS 63 (454) Q Consensus 2 ~n~f------------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia 63 (454) +|+. .+..+..... ..+..-+.....+.-........... ....-+..++....|+..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~r~~~~~~yy~g~~~i~~~~~~~~~--~~~~ki~~n~~~~ivd~~~ 77 (453) T protein:vir:73 1 MNLKPIKLMTYSRDEEITDKVVNDFMKKHQEE-VERYEYLGNMYKGIMEISSQKAKDSW--KPDNRLTNNFAKYIVDTFV 77 (453) T ss_pred CccccceeeeccccccCCHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhcCCCCCcc--CccceeecchHHHHHHHhh Confidence 1111 0000000000 00000000111110000000000000 0011122456677888888 Q ss_pred HhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcce Q lcl|Aclame:pro 64 QDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRV 143 (454) Q Consensus 64 ~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~ 143 (454) ..+-+-|+.+...++ .....+..++.. | ........+..+.+.+|.+|+.+-.+.+|.+ .+..++|..+ T Consensus 78 ~~l~g~~~~~~~~d~------~~~~~l~~~~~~-n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~ 146 (453) T protein:vir:73 78 GYFNGIPIKKTHDDK------SVLEAMQLFDNL-N---DMEDEESELAKIACVYGRAYELMYQNESTES-EVIYCSPLNV 146 (453) T ss_pred hhhcccCceeecCCh------HHHHHHHHHHHh-c---ChhHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccce Confidence 888777776532111 011223333222 2 3445667788899999999999988888876 4667888888 Q ss_pred EEEECCCC-c-eeeEE--eccccccccceeEEehhheEEeecC--------------------CCcCcccccchhhhhHh Q lcl|Aclame:pro 144 EPLVADDG-E-VFYRI--TPDRNCGITEAVTVPAREVIHDRFN--------------------CFFHPLIGLPPVYAAGL 199 (454) Q Consensus 144 ~~~~~~~g-~-~~~~~--~~~~~~~~~~~~~~~~~~vih~~~~--------------------~~~~~~~G~s~l~~~~~ 199 (454) .+..+... . ..+.+ ...... ......+....++++... .-.+...|.|-+..+.. T Consensus 147 ~~v~dd~~~~~~~~~i~~~~~~~~-~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~ 225 (453) T protein:vir:73 147 FMVYDDSIKQKPLFAVYYGFDEEG-NLSGTVYTLLETISITGKAGEVKFGESTYNVYSDLPIVEYNFNEERQSIFEPVHS 225 (453) T ss_pred EEEEeCCCCceeEEEEEEEEecCc-eEEEEEEeCCeEEEEEecCCceEEccceeccCCceeEEEecCCCCCCcchhhHHH Confidence 87775532 1 11111 100000 000111122222221100 00122367777777777 Q ss_pred HHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHH Q lcl|Aclame:pro 200 AATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQ 279 (454) Q Consensus 200 ~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~ 279 (454) .++..+.+.-...+.....+.|..++.- ....++....++..-.-...+...+.....+.+.++.-+.....+..+... T Consensus 226 liDa~~~~~S~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 304 (453) T protein:vir:73 226 LINSYNKVTSEKANDVEYFSDQYLVFLG-AEVDEEDAKNIKDNRLINFFDKNSNGQGTNAAKVDVKFLDKPDSDVQTENL 304 (453) T ss_pred HHHHHHHHHHHHHHHHHHhccceeeeec-CCCCchhhhcccccccccccccccccccccccCceeEEeeecCCHHHHHHH Confidence 7776666655555556666667766643 233444444443221111111122223334455555555544455566777 Q ss_pred HHHHHHHHHHHhccchhhhcccccccccCHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhcCcccceeee Q lcl|Aclame:pro 280 LKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ-------------YYSQCLQTLIESIELLLDEALETGENESTEF 346 (454) Q Consensus 280 ~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~-------------~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f 346 (454) .+...+.|+..-++|..-... .+| ++.++.... .+...+.-+++.+...++..-.......+.+ T Consensus 305 ~~~l~~~I~~~s~~p~~~~~~--~gn-~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~v 381 (453) T protein:vir:73 305 LNRLERSIFQFTMAANISDEN--FGN-SSGVALAYKLQAMSNLALSFQRKFQSALNRRYSLWSSLSTNASNKDAWKDIEY 381 (453) T ss_pred HHHHHHHHHHHhCCcccCccc--ccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceE Confidence 888899999988888642221 112 122222111 1222222222222222221111112234566 Q ss_pred cchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCC Q lcl|Aclame:pro 347 DVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQA 426 (454) Q Consensus 347 ~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (454) .+..-+..|..+.++.+.++. |+++..-+.++++.-+.+..+.- .+. +...... ..+... .... T Consensus 382 ~f~~~~p~~~~~~a~~~~k~~--giis~et~~~~~~~~~d~~~E~~-------ri~---~E~~~~~---~~~~~~-~~~~ 445 (453) T protein:vir:73 382 TFTRNEPKDIKEQAETANILK--GITSEETALSVISVIPDVQAEME-------KIK---KKKLLQL---SLTRTS-NLVR 445 (453) T ss_pred EeCCCCCCCHHHHHHHHHHHh--ccCcHHHHHHhCCCCCCHHHHHH-------HHH---HHHHHHH---HHHHhc-cCCc Confidence 677777889999999999886 78887777777765322111100 010 1000000 000000 0000 Q ss_pred CcccCccc Q lcl|Aclame:pro 427 VAASDGNK 434 (454) Q Consensus 427 ~~~~d~~~ 434 (454) ++...++= T Consensus 446 ~~~~~~~~ 453 (453) T protein:vir:73 446 MKQMRGNL 453 (453) T ss_pred chhhhcCC Confidence 11111110 No 191 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=98.66 E-value=1.3e-07 Score=58.29 Aligned_cols=396 Identities=9% Similarity=-0.007 Sum_probs=175.5 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhcccc---cc--CCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEe Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGA---WQ--QGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQ 75 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~ 75 (454) ...++.+......... .+..-...++.+--..+... .. .........-+.++....+|+..++.+-+-|+.+.. T Consensus 45 ~~~~i~~~i~~~~~~~-~r~~~l~~YY~g~~~I~~~~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~G~p~~~~~ 123 (492) T protein:vir:94 45 LEEMIVRYIKQHLEKL-PEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH 123 (492) T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhccccccccccccccccccccccccccccccchHHHHHHHHHhhhcccCceecc Confidence 1111111111000000 00000001111000000000 00 000001111233577778899988888888877632 Q ss_pred ccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCC--Cce Q lcl|Aclame:pro 76 TDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADD--GEV 153 (454) Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~--g~~ 153 (454) . +.. ....+..++. | ........+..+++.+|.+|+++-.+.+|.+ .+..++|..+.+.++.. +.. T Consensus 124 ~--d~~----~~~~l~~~~~--n---~~~~~~~~~~~~a~~~G~a~~~v~~d~dg~~-~~~~~~p~~~~~v~d~~~~~~~ 191 (492) T protein:vir:94 124 T--DDE----VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEEL 191 (492) T ss_pred C--chH----HHHHHHHHHh--c---cHHHHHHHHHHHHhhCCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCce Confidence 1 111 1122333332 2 2345566778889999999999888888875 57788999988887632 222 Q ss_pred eeEEeccccccccceeEEehhheEEeecC---------------------CC---------cCcccccchhhhhHhHHHH Q lcl|Aclame:pro 154 FYRITPDRNCGITEAVTVPAREVIHDRFN---------------------CF---------FHPLIGLPPVYAAGLAATQ 203 (454) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~vih~~~~---------------------~~---------~~~~~G~s~l~~~~~~i~~ 203 (454) .+.+..+..........+....+.++... ++ .+...|.|-+..+...++. T Consensus 192 ~a~ir~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~sd~e~v~~liDa 271 (492) T protein:vir:94 192 EAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDA 271 (492) T ss_pred EEEEEEEeeccceeEEEEecCeEEEEEEecCeeeeccccccccccccccccCCCccceEEecCCCCCCCchHHHHHHHHH Confidence 22111100000000011111122211100 00 0123578888888888877 Q ss_pred HHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHH Q lcl|Aclame:pro 204 GHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMT 283 (454) Q Consensus 204 ~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~ 283 (454) .+.+.--..+.+...+.|..++.-- +.+........+. ..+++.++++.++..+........+....+.. T Consensus 272 ~d~~~S~~~~~~~~~~~p~lv~~g~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 341 (492) T protein:vir:94 272 YNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR-------YYGAIKVSDNGGVDTIQVEVPVENSKKYLDEL 341 (492) T ss_pred HHHHHHHHHHHHHHhcCceeeeecC---CcccchhhHHHHh-------hccceecCCCCcceeEeccCCHHHHHHHHHHH Confidence 7776666666667677776665432 2222222222221 22344455554444444444444566677888 Q ss_pred HHHHHHHhccchhhhcccccccccCHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhhcCcccceeeecchh Q lcl|Aclame:pro 284 AEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQY-------------YSQCLQTLIESIELLLDEALETGENESTEFDVTT 350 (454) Q Consensus 284 ~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~-------------~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~ 350 (454) .+.|+..-++|..-.+... ++ .+.++....+ +...++-+++.|...++ .......+.+.+.. T Consensus 342 ~~~I~~~s~~p~~~~~~~~-~n-~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~---~~~~~~~i~v~f~~ 416 (492) T protein:vir:94 342 YQKIMLFGQAVDFSSDKFG-SA-PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD---IKGEHKDVDISFNY 416 (492) T ss_pred HHHHHHHhCCcCCCccccc-cC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCcccceeeEEecC Confidence 8888888888864332211 11 1222221111 12222222222222221 11233456677777 Q ss_pred hhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCC--ccccccccccccccccccccccccCCCccCcccCCCCCCc Q lcl|Aclame:pro 351 LLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAG--GDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVA 428 (454) Q Consensus 351 l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (454) -+..+..+.++.+.++. |+++..-++++++.-+.+. .+.+- ......... . +..... ..+..+. T Consensus 417 ~~p~~~~e~~~~~~kl~--giiS~et~~~~l~~v~d~~~E~eri~---------~E~~~~~~~-~-~~~~~~-~~~~~~~ 482 (492) T protein:vir:94 417 NKVANTELQVQTAQQSM--GIVSHETVLENHPFVEDLQAELERIE---------QEQMEYNKQ-L-PNLDDG-GADSAQQ 482 (492) T ss_pred CCCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHHHH---------HHHHHHHhh-c-cccccc-cCCCCcc Confidence 78889999999998885 7898888888887633211 11110 000000000 0 000000 0001111 Q ss_pred ccCccccccc Q lcl|Aclame:pro 429 ASDGNKAITE 438 (454) Q Consensus 429 ~~d~~~~~~~ 438 (454) .++.+.+..| T Consensus 483 ~~~~~~~e~e 492 (492) T protein:vir:94 483 QERSNNKESE 492 (492) T ss_pred ccCCccccCC Confidence 1111111112 No 192 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=98.63 E-value=1.6e-07 Score=57.78 Aligned_cols=397 Identities=14% Similarity=0.122 Sum_probs=181.4 Q ss_pred Ccc----hhhhhccc---c---ccc-----cccCc------ccchhhhhhhhhhccccc-c-CCccccHHHHHhhHHHHH Q lcl|Aclame:pro 1 MWN----LLRRTRKN---Q---KSG-----RDVRE------AGWTSLFQAVAEPFAGAW-Q-QGVKADPEAVLSFHAVFA 57 (454) Q Consensus 1 m~n----~f~r~~~~---~---~~~-----~~~~~------~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~v~~ 57 (454) ||. |+|...+. . ... ..... .-|.....+-...+.... . .+.... +..+....... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~-~~~~s~n~~~~ 79 (499) T protein:vir:80 1 MINQIIAGVKGVMRRMGLLKSLKDVTDHKKVNANDEDYKYIDMWKRLYQGNYAEWHNLNYEHNGNPVN-RRQLSMNLPKV 79 (499) T ss_pred ChhHHHHHHHHHHHHhccccchhhhhcCCCCcCCHHHHHHHHHHHHHhcCCcchhhccccccCCCccc-cceeecchHHH Confidence 777 33322211 0 000 00000 001111111000110000 0 001111 11223344556 Q ss_pred HHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEE Q lcl|Aclame:pro 58 CISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRI 137 (454) Q Consensus 58 ~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~ 137 (454) +++..|+.+.+=|..+...+ ......+.+-...-....-+..++...+..|.+|+.+..+.+|.+ .+.. T Consensus 80 iv~~~a~~l~~ep~~i~~~d----------~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~-~i~~ 148 (499) T protein:vir:80 80 TAKYMSKLLFNEKVKINIDD----------ETAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNV-KVSF 148 (499) T ss_pred HHHHHHHhhhCCcceEeeCC----------HHHHHHHHHHHhhccHHHHHHHHHHHHhhcCcEEEEEEECCCCcE-EEEE Confidence 77888888877766654211 111122222222223455566677788889999999988888765 4678 Q ss_pred ecCcceEEEECCCCce----e----------e----------------EEe-----ccccccccceeE------------ Q lcl|Aclame:pro 138 LDWNRVEPLVADDGEV----F----------Y----------------RIT-----PDRNCGITEAVT------------ 170 (454) Q Consensus 138 l~~~~~~~~~~~~g~~----~----------~----------------~~~-----~~~~~~~~~~~~------------ 170 (454) ++|..+-+...+.+.. + | ++. .......|..+. T Consensus 149 v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~y~~lE~h~~~~~~~~~y~I~n~~~~~~~~~~lG~~v~l~~~~~~~~~~~ 228 (499) T protein:vir:80 149 ATADCMYPLSNDSENVDECLIANSFHKNNKYYKLLEWNEWKGEKEEVYTVTTELYQSDDPNELGGKVSLKLLFNDIEPVV 228 (499) T ss_pred EcCCceEEEEecCCCeEEEEEEEEEeecCeEEEEEEEEEecccceeeEEEEEEEEeccCccccCcccchhhhccCcCCce Confidence 8888887754443321 0 0 000 000000011110 Q ss_pred ----EehhheEEeecCCC----cCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHH--HH-HH Q lcl|Aclame:pro 171 ----VPAREVIHDRFNCF----FHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEEN--AK-KL 239 (454) Q Consensus 171 ----~~~~~vih~~~~~~----~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~--~~-~~ 239 (454) +..--++||+.+-. .+.+.|+|.+..+...++..+.......+-|+.+ ....++ +..+-+.. .. .. T Consensus 229 ~~~~~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~l~~~~~~~g~~ 305 (499) T protein:vir:80 229 PLPSLTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLG-KKKVLV--PSSFVKTAVNLDGST 305 (499) T ss_pred eecCCCccceEeecCCccccccCCCccCCchHhhHHHHHHHHHHHHHHHHHHHHhc-ccceec--chhhhhccCCCCCCc Confidence 01111345554321 2345799999999888888887776666667654 333332 11110000 00 00 Q ss_pred HHHHHHHhcCcccCCce-ec--CCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHH Q lcl|Aclame:pro 240 KSNWDSGYTGENAGKTA-IL--SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQY 316 (454) Q Consensus 240 ~~~~~~~~~g~n~g~~~-vl--~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~ 316 (454) ...|... ....+.. .. +++-.++.++.....-++.+..+...++|....|+++..+|...++. .|+.+..... T Consensus 306 ~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~fg~~~~g~-~TAtei~s~~ 381 (499) T protein:vir:80 306 TQYFDST---DEAFFLYQGEQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGL-KTATEVVSEK 381 (499) T ss_pred ccCCCcc---cceeeEeeccCCCCcCceeEecCcCChHHHHHHHHHHHHHHHHhcCCChhhcCCCcccc-hhHHHHHHHH Confidence 0000000 0000011 11 12224566665555667888889999999999999999999866553 2333332111 Q ss_pred --HHHHHHHHHHHHHHHHHHh-----------h-cC---cccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHH Q lcl|Aclame:pro 317 --YSQCLQTLIESIELLLDEA-----------L-ET---GENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARK 379 (454) Q Consensus 317 --~~~~i~P~~~~ie~~l~~~-----------l-~~---~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~ 379 (454) ...++.-....++..|... . +. .....+.++|++-+..|.++.++...+++.+|+|+.-.++. T Consensus 382 ~~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~~~~Gi~S~et~l~ 461 (499) T protein:vir:80 382 SETYQTKNSHSQLIEQGIKEMIVSILEVGKLIKAYDGDTVELDTITVDFDDSIAQDEDTTINRYTTAKNQGMIPLKIALQ 461 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHh Confidence 1112222222222222221 1 11 12346778888888899999999999999999999888875 Q ss_pred Hh-cCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccccccccc Q lcl|Aclame:pro 380 RE-NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETE 440 (454) Q Consensus 380 ~~-g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 440 (454) .. |.+. ++..+.+- .+........++ +...+. . .+.+ T Consensus 462 ~~~~~~d-~ea~~el~-----~i~~E~~~~~~~---~d~~g~----~-----------ge~e 499 (499) T protein:vir:80 462 RAWNITE-AEADEWAE-----MLAKEKQAEIPN---NDMTGI----F-----------GEEE 499 (499) T ss_pred hcCCCCh-HHHHHHHH-----HHHHHhhcCCCC---CCcccc----C-----------CCCC Confidence 43 4321 11111110 010000000000 000000 0 0000 No 193 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=98.62 E-value=1.5e-07 Score=57.96 Aligned_cols=395 Identities=10% Similarity=0.057 Sum_probs=178.8 Q ss_pred Ccc----hhhhhcccc---cc--------ccccC------cccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHH Q lcl|Aclame:pro 1 MWN----LLRRTRKNQ---KS--------GRDVR------EAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACI 59 (454) Q Consensus 1 m~n----~f~r~~~~~---~~--------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i 59 (454) ||. ||||....- .. ...+. ...|..++.+-...+......+.. ..+..........++ T Consensus 3 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ri~~~~~~y~g~~~~~~~~~~~~~~-~~~~~~sln~~~~i~ 81 (508) T protein:vir:15 3 LIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIK-KKRLKNTINMAKTAA 81 (508) T ss_pred hHHHHHHHHHHHHHHhccccchHHhhcccccccCHHHHHHHHHHHHHhcCCCcccccccCCCCc-cccceeecchHHHHH Confidence 333 444322110 00 00011 111111111111111100001111 111112223445566 Q ss_pred HHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEec Q lcl|Aclame:pro 60 SLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILD 139 (454) Q Consensus 60 ~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~ 139 (454) +..|+.+..=|..+....+ .. .+..+..++.. -......+..+.+.+..|.+++.+..+.+ . ..+..++ T Consensus 82 ~~~A~lv~~e~~~i~v~~~-~~----~~e~l~~il~~----n~f~~~~~~~~e~a~a~G~~~~k~~~d~~-~-~~i~~v~ 150 (508) T protein:vir:15 82 RRIASVVFNEKAEIHVKDN-NE----ADKFLNDVLED----NDFKNKFEEALEKGVALGGFAMRPYIDGN-H-IKIAWVR 150 (508) T ss_pred HHHHhhhhCCCceEEeCCc-hH----HHHHHHHHHHh----ccHHHHHHHHHHHHhhcCceEEEEEEeCC-e-eEEEEEc Confidence 7777776555544432111 11 11122222222 22344456667778889999887766543 2 4566777 Q ss_pred CcceEEEECCCCc------------------eeeEE----e---------------ccccccccceeEE----------- Q lcl|Aclame:pro 140 WNRVEPLVADDGE------------------VFYRI----T---------------PDRNCGITEAVTV----------- 171 (454) Q Consensus 140 ~~~~~~~~~~~g~------------------~~~~~----~---------------~~~~~~~~~~~~~----------- 171 (454) |..+-+.....+. ..|+. . .......|.++.+ T Consensus 151 ad~~~P~~~d~~~~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~ 230 (508) T protein:vir:15 151 ADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAP 230 (508) T ss_pred CCeeEEEEEcCCCeEEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhcCcccchhhcccccCCCc Confidence 7776664322221 11110 0 0000000111110 Q ss_pred -------ehhheEEeecCCCc----CcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEe---cCccCCHHHHH Q lcl|Aclame:pro 172 -------PAREVIHDRFNCFF----HPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIE---IPGSITEENAK 237 (454) Q Consensus 172 -------~~~~vih~~~~~~~----~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~---~~~~~s~e~~~ 237 (454) +.--..||+.+-+. +.++|+|.+..+...++..+........-|+. +.+..++. ++.+.. . . T Consensus 231 ~~~~~g~~~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~~~l~~d~~--~-~ 306 (508) T protein:vir:15 231 QVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRL-GQKHIAVQPGMLRFDDE--H-K 306 (508) T ss_pred ceEecCCCcceeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHHh-cccceeechHHhcCCCC--C-c Confidence 00112355432221 34579999999999999888887777777764 44554441 111111 0 0 Q ss_pred HHHHHHHHHhcCcccCCcee--cCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH- Q lcl|Aclame:pro 238 KLKSNWDSGYTGENAGKTAI--LSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ- 314 (454) Q Consensus 238 ~~~~~~~~~~~g~n~g~~~v--l~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~- 314 (454) . .|. .+.+....+- -++|..++.++....+-++.+..+...+.|....|+++..+|...++. .|+.+... T Consensus 307 ~---~~~---~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~~~f~~~~~~~-~TAtei~s~ 379 (508) T protein:vir:15 307 P---TFD---TEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV-KTATEVVSN 379 (508) T ss_pred c---ccC---CCCeeEEeccCCCCCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCchhcccccCcc-ccHHHHHHH Confidence 0 010 0011111011 123445666776667778999999999999999999999999765543 34444311 Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHh-hcC-----------cccceeeecchhhhhcCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 315 ------------QYYSQCLQTLIESIELLLDEA-LET-----------GENESTEFDVTTLLRMDSERRMKTLGDAVKNT 370 (454) Q Consensus 315 ------------~~~~~~i~P~~~~ie~~l~~~-l~~-----------~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g 370 (454) ..++.++..++..|....+.. +.. .....+.+++++-+..|.++.++...+++.+| T Consensus 380 ~~~~~~t~~~~~~~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~v~aG 459 (508) T protein:vir:15 380 NSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG 459 (508) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCCcceEEEeCCCCCCCHHHHHHHHHHHHhcC Confidence 112223333322222221110 111 12345678888888999999999999999999 Q ss_pred CcCHHHHHHHh-cCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 371 LLTPNEARKRE-NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 371 ~~T~NE~R~~~-g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) +|+.-+++... |++. ++.++.+- .+.. ......+..+ ...+...++++ T Consensus 460 i~s~e~~i~~~~g~~d-eea~~el~-----ri~~---E~~~~~~~~~------~~~~~~g~~ge 508 (508) T protein:vir:15 460 ALSKQTFLQRNYGMTD-EQAAEELA-----KIQS---EAPTDTFEGG------RSAILNGGDGE 508 (508) T ss_pred CCCHHHHHHhcCCCCh-HHHHHHHH-----HHHH---hccccCcccc------ccccCCCCCCC Confidence 99999987553 5432 11111110 0100 0000000000 00011111111 No 194 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=98.61 E-value=1.8e-07 Score=57.52 Aligned_cols=383 Identities=8% Similarity=-0.031 Sum_probs=173.2 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) -.+++.+......... .+..-...+..+--..+........ ....-+.++....+|+..+..+-+.|+.+...++ T Consensus 2 ~~~~l~~~i~~~~~~~-~r~~~l~~yy~g~~~il~~~~~~~~--~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~~-- 76 (429) T protein:vir:98 2 TKDLLSELIQKHRSFN-LSYSAYKQLYEGDHAILQQKQKEQY--KPDNRLVVNFAKYIVDTFNGYFIGVPVQTSHENK-- 76 (429) T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHhccccccccccccccC--CCcceeecchHHHHHHHHhhhhcccCceeecCCh-- Confidence 0111111111000000 0000000001100000000000000 0011234567788899999888888877642111 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCC--ceeeEE- Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDG--EVFYRI- 157 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g--~~~~~~- 157 (454) .....+..++.. | ........+..+++.+|.+|+.+..+.+|.+ .+..++|..+.+..+... ...+.+ T Consensus 77 ----~~~~~l~~~~~~-n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~~~~~~p~~~~~v~dd~~~~~~~~~i~ 147 (429) T protein:vir:98 77 ----QVSNYLELLDGY-N---DQDDNNAELSKICSIYGHGYELVFNDENAEA-GITYLTPLEAFIVYDDSIRQKPLFAVR 147 (429) T ss_pred ----HHHHHHHHHHhh-c---CHhHHHHHHHHHHhhcCeEEEEEEecCCCcE-EEEEEcccceEEEEeCCCCCceEEEEE Confidence 111223333333 3 3345677888899999999999988888875 467788988888776432 111111 Q ss_pred -eccccccc----------------------cc--eeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHH Q lcl|Aclame:pro 158 -TPDRNCGI----------------------TE--AVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENST 212 (454) Q Consensus 158 -~~~~~~~~----------------------~~--~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~ 212 (454) ........ .. +..+..-.|++++ +...|.|-+..+...++....+.--.. T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~sd~e~v~~liD~~d~~~s~~~ 222 (429) T protein:vir:98 148 YFYNKGGVLEGSYSDASNITYFKDGEKGIEIGESEPHPFDGVPMIEYV-----ENEERQSLLASVVTLINAFNKAISEKA 222 (429) T ss_pred EEEecCceEEEEEEeCceEEEEEecCCceEecccccccCCccceEEec-----CCCCCCCcHHHHHHHHHHHHHHHHHHH Confidence 10000000 00 0011111234443 234688888887777777777766666 Q ss_pred HHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecC----CCceeeeccccchhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 213 SFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILS----NGAKYNPTTFSPVDSQTVEQLKMTAEIVC 288 (454) Q Consensus 213 ~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia 288 (454) +.+...+.|-.+++-- ..+++....++ .++++.++ .+.++..+........+....+...+.|+ T Consensus 223 ~~~~~~~~p~~~i~g~-~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~ 290 (429) T protein:vir:98 223 NDVEYFADAYLKILGA-ELDDETLKSLR-----------DTRIINLKDTDAQQLTVEFLQKPDADATQEHLLDRLENLIF 290 (429) T ss_pred HHHHHhcCceeeeecC-CCCcchhhhHh-----------hCceeeccCCCCCCcceeEEeecCCHHHHHHHHHHHHHHHH Confidence 6667777777776532 22332222211 11233332 12234444434444446667789999999 Q ss_pred HHhccchhhhcccccccccCHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcC Q lcl|Aclame:pro 289 SVFRVPAYKIGVGQPPSSDNVEALEQQY-------------YSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMD 355 (454) Q Consensus 289 ~~fgvp~~~lg~~~~~~~~n~e~~~~~~-------------~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d 355 (454) ..-++|..-.+.. +| .+.++....+ +...+.-+++.+...++..-.......+.+.+...+..| T Consensus 291 ~~s~~p~~~~~~~--gn-~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~d~~~i~v~f~~~~p~~ 367 (429) T protein:vir:98 291 RTAMVANISDESF--GT-ASGIALRYRLQAMDNLAKTKERKFMSGMNRRYKLIASYPTSKIGPKDWIGIKYKFTRNLPAN 367 (429) T ss_pred HHhCccccCcccc--cc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccceEEeCCCCCcC Confidence 9999986433221 11 1222221111 111222222222222111111111123566777778889 Q ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 356 SERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 356 ~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) ..+.++.+.++ +|+++..-+.++++.-+.+.. -+ ........ +... ...+... ...+++|.+ T Consensus 368 ~~~~a~~~~kl--~g~is~et~~~~l~~v~d~~~--E~--------~ri~~E~~-~~~~-~~~~~~~--~~~~~~~~~ 429 (429) T protein:vir:98 368 LLEESQIAGNL--AGIVSEETQVGVLSIVENPQK--EI--------ERKNSDKS-TLIS-RQAGGLN--GQNTTTILE 429 (429) T ss_pred HHHHHHHHHHH--hccCchHHHHHhCCCCCCHHH--HH--------HHHHHHHH-HHHH-HHHhhhc--CCCCCCCCC Confidence 99999998887 578888778888765332211 10 00001000 0000 0001111 111111111 No 195 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=98.60 E-value=2.2e-07 Score=57.13 Aligned_cols=393 Identities=9% Similarity=-0.004 Sum_probs=175.4 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccc---cC--CccccHHHHHhhHHHHHHHHHHHHhhcccceEEEe Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAW---QQ--GVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQ 75 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~ 75 (454) ...++.+......... .+..-...++.+--..+.... .. .....+..-+.++....+|+..+..+-+-|+.+.. T Consensus 45 ~~~~i~~~i~~~~~~~-~r~~~l~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~ 123 (492) T protein:vir:97 45 LEEMIVRYIKQHLEKL-PEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH 123 (492) T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhcccCccccccccccccccccccccccccccchHHHHHHHHhhhhcccCceecc Confidence 1111222111100000 000000011111000000000 00 00000111123567778899988888888877632 Q ss_pred ccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCC--Cce Q lcl|Aclame:pro 76 TDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADD--GEV 153 (454) Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~--g~~ 153 (454) . +.. ....+..++. | +..+....+..+++.+|.||+++..+.+|.+ .+..++|..+.+..+.. +.. T Consensus 124 ~--d~~----~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~d~dg~~-~~~~~~p~~~~~i~d~~~~~~~ 191 (492) T protein:vir:97 124 T--DDE----VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEEL 191 (492) T ss_pred C--chH----HHHHHHHHHh--c---cHHHHHHHHHHHHhhcCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCce Confidence 1 111 1122333332 2 2334556678889999999999888888875 57788999998887642 222 Q ss_pred eeEEeccccccccceeEEehhh-----------------------------------eEEeecCCCcCcccccchhhhhH Q lcl|Aclame:pro 154 FYRITPDRNCGITEAVTVPARE-----------------------------------VIHDRFNCFFHPLIGLPPVYAAG 198 (454) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------------vih~~~~~~~~~~~G~s~l~~~~ 198 (454) .+.+..+..........+.... |++++. ...|.|-+..+. T Consensus 192 ~~~vr~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~ 266 (492) T protein:vir:97 192 EAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYK 266 (492) T ss_pred EEEEEEEeeccceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecC-----CCCCCCchHhHH Confidence 2111110000000001111122 222221 235788888777 Q ss_pred hHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHH Q lcl|Aclame:pro 199 LAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVE 278 (454) Q Consensus 199 ~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e 278 (454) ..++..+.+.--..+.+...+.|-.++.-- ..+.....+..+. ..+++.++++.+...+.....+..+.. T Consensus 267 ~liDa~d~~~S~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 336 (492) T protein:vir:97 267 TLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR-------YYGAIKVSDNGGVDTIQVEVPVENSKK 336 (492) T ss_pred HHHHHHHHHHHHHHHHHHHhccceeeeecC---CcccchhHHHHHh-------hccceecCCCCcceeEeccCCHHHHHH Confidence 777777766655566666666676665432 2222222222221 223455555555555544445566777 Q ss_pred HHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhhcCcccceee Q lcl|Aclame:pro 279 QLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQY-------------YSQCLQTLIESIELLLDEALETGENESTE 345 (454) Q Consensus 279 ~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~-------------~~~~i~P~~~~ie~~l~~~l~~~~~~~~~ 345 (454) ..+...+.|+..-++|....+... ++ .+.++....+ +...+..+++.|...++ .......+. T Consensus 337 ~~~~L~~~I~~~s~~p~~~~~~~~-~n-~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~---~~~~~~~i~ 411 (492) T protein:vir:97 337 YLDELYQKIMLFGQAVDFSSDKFG-SA-PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD---IKGEHKDVD 411 (492) T ss_pred HHHHHHHHHHHHhCCCCCCccccc-cC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCcccceee Confidence 888889999999998865432211 11 1122221111 12222222222222221 122334566 Q ss_pred ecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCC Q lcl|Aclame:pro 346 FDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQ 425 (454) Q Consensus 346 f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (454) +.+..-+..+..+.++.+.++ .|+++..-+.+++++-..+....-. +...... ....... .... ..+. T Consensus 412 v~f~~~~p~~~~e~a~~~~kl--~G~iS~et~l~~l~~v~d~~~Eler-------i~~E~~~-~~~~~~~-~~~~-~~~~ 479 (492) T protein:vir:97 412 ISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELER-------IEQEQTE-YNKQLPN-LDDG-GADS 479 (492) T ss_pred EEecCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHH-------HHHHHHH-HHHhhhc-cccC-CCCC Confidence 667777788899999998888 4789888788887653321111000 0000000 0000000 0000 0000 Q ss_pred CCcccCccccccc Q lcl|Aclame:pro 426 AVAASDGNKAITE 438 (454) Q Consensus 426 ~~~~~d~~~~~~~ 438 (454) .++.++.+.+..| T Consensus 480 ~~~~~~~~~~~~e 492 (492) T protein:vir:97 480 AQQQERSNNKESE 492 (492) T ss_pred CcccccccccccC Confidence 1111111111111 No 196 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=98.55 E-value=3e-07 Score=56.33 Aligned_cols=397 Identities=11% Similarity=-0.003 Sum_probs=169.3 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhcccccc-----CCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEe Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQ-----QGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQ 75 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~ 75 (454) -..++.+......... .+......+..+--........ ......+..-+.++.....++..++.+.+-|+.+.. T Consensus 28 ~~~~i~~~i~~~~~~~-~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~ 106 (474) T protein:vir:96 28 QEEMIIRLINNHKQKL-KDINVGQKYYDKDNDINYQAYKQDLHGNIDYTKPDWRITTNFHQNLVDQKVSYVAGKPVTYAH 106 (474) T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHhcccCccccccchhhhcccccccccccccccchHHHHHHhhhhhhcccCceecc Confidence 1111111111100000 0000000000100000000000 000000001123456677888888888888887642 Q ss_pred ccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCC--Cce Q lcl|Aclame:pro 76 TDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADD--GEV 153 (454) Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~--g~~ 153 (454) .++ . ....+..++. | +.......+..+++.+|.+|..+-++.+|.+ .+..++|..+.+..+.. +.. T Consensus 107 ~~~--~----~~~~l~~~~~--n---~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~ 174 (474) T protein:vir:96 107 DDD--K----VLDVIHQVLD--T---RWDNKLIDILTAASNKGIDWLQVYINEDGEL-KLFRVPAEQAIPIWTDKEREQL 174 (474) T ss_pred CCh--H----HHHHHHHHHh--c---cHHHHHHHHHHHHhhCCeEEEEeeeCCCCce-EEEEEcccceEEEEcCCCCCce Confidence 111 1 1222333332 2 3455566778889999999999888888865 57778999998887642 221 Q ss_pred eeEEeccccccccceeEEehhheEEeecCC------------------------------CcCcccccchhhhhHhHHHH Q lcl|Aclame:pro 154 FYRITPDRNCGITEAVTVPAREVIHDRFNC------------------------------FFHPLIGLPPVYAAGLAATQ 203 (454) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~vih~~~~~------------------------------~~~~~~G~s~l~~~~~~i~~ 203 (454) .+.+..+..........+....+.++.... -.+...|.|-+..+...++. T Consensus 175 ~a~ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa 254 (474) T protein:vir:96 175 NAFIRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDA 254 (474) T ss_pred EEEEEEEeecCeeEEEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHH Confidence 111110000000001112222222221100 00223577777777777777 Q ss_pred HHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHH Q lcl|Aclame:pro 204 GHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMT 283 (454) Q Consensus 204 ~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~ 283 (454) .+.+.--..+.+...+.|-.++.- ...+........+ +..+++.++++.++.-+.....+..+....+.. T Consensus 255 ~d~~~S~~~~~~~~~~~p~lv~~g---~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l 324 (474) T protein:vir:96 255 IDKRLSDVQNMFDESVELIYILRG---YEGEDLSEFMEGL-------KYYKAINVSSDGGVETIQVEVPVASTKEYLDMM 324 (474) T ss_pred HHHHHHHHHHHHHHhhcchhhhcC---CCcccccchhhhh-------hccceeeccCCCceeEEeccCCHHHHHHHHHHH Confidence 665555555555555556555432 1212222222211 123456566655555555445556677788889 Q ss_pred HHHHHHHhccchhhhcccccccccCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchh Q lcl|Aclame:pro 284 AEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ-------------QYYSQCLQTLIESIELLLDEALETGENESTEFDVTT 350 (454) Q Consensus 284 ~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~-------------~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~ 350 (454) .+.|+..-++|........ ++ .+..+... ..+...+..+++.|...+. .......+.+.|.. T Consensus 325 ~~~I~~~s~~p~~~~~~~~-~n-~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g---~~~d~~~i~i~f~~ 399 (474) T protein:vir:96 325 RAYIVEFGQGVDFQTDKFG-SA-TSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNK---IKLDAKEIEITFNF 399 (474) T ss_pred HHHHHHHhCCcCccccccc-cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcccceeeEEecC Confidence 9999999999865432211 11 11122111 1122222222222222111 11122345566666 Q ss_pred hhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCccc Q lcl|Aclame:pro 351 LLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAAS 430 (454) Q Consensus 351 l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (454) -+..+..+.++. +.++|+++...+++++++-..+ +.-+ ..+......... ..+...+.......++... T Consensus 400 ~~p~~~~e~a~~---~~~~giiS~et~~~~lp~v~D~--~~E~-----eri~~E~~~~~~-~~~~~~~~~~~~~~~~~~~ 468 (474) T protein:vir:96 400 NVMVNDLEQSQI---GAQSQYLSKETLVRHHPWVDDP--KAEL-----ERLDEEQLELNK-QLPNLDDGGADGAQQQQQS 468 (474) T ss_pred CCccCHHHHHHH---HHHcCCCChHHHHHhCCCCCCH--HHHH-----HHHHHHHHHHHh-hccccccccCCCCCCcCCC Confidence 666666666655 4557999988888887653221 1111 011000000000 0000000000011111111 Q ss_pred Cccccc Q lcl|Aclame:pro 431 DGNKAI 436 (454) Q Consensus 431 d~~~~~ 436 (454) +++++. T Consensus 469 ~~~e~~ 474 (474) T protein:vir:96 469 ENNQSK 474 (474) T ss_pred CccccC Confidence 111111 No 197 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=98.55 E-value=3e-07 Score=56.33 Aligned_cols=397 Identities=11% Similarity=-0.003 Sum_probs=169.3 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhcccccc-----CCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEe Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQ-----QGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQ 75 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~ 75 (454) -..++.+......... .+......+..+--........ ......+..-+.++.....++..++.+.+-|+.+.. T Consensus 28 ~~~~i~~~i~~~~~~~-~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~ 106 (474) T protein:vir:95 28 QEEMIIRLINNHKQKL-KDINVGQKYYDKDNDINYQAYKQDLHGNIDYTKPDWRITTNFHQNLVDQKVSYVAGKPVTYAH 106 (474) T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHhcccCccccccchhhhcccccccccccccccchHHHHHHhhhhhhcccCceecc Confidence 1111111111100000 0000000000100000000000 000000001123456677888888888888887642 Q ss_pred ccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCC--Cce Q lcl|Aclame:pro 76 TDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADD--GEV 153 (454) Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~--g~~ 153 (454) .++ . ....+..++. | +.......+..+++.+|.+|..+-++.+|.+ .+..++|..+.+..+.. +.. T Consensus 107 ~~~--~----~~~~l~~~~~--n---~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~ 174 (474) T protein:vir:95 107 DDD--K----VLDVIHQVLD--T---RWDNKLIDILTAASNKGIDWLQVYINEDGEL-KLFRVPAEQAIPIWTDKEREQL 174 (474) T ss_pred CCh--H----HHHHHHHHHh--c---cHHHHHHHHHHHHhhCCeEEEEeeeCCCCce-EEEEEcccceEEEEcCCCCCce Confidence 111 1 1222333332 2 3455566778889999999999888888865 57778999998887642 221 Q ss_pred eeEEeccccccccceeEEehhheEEeecCC------------------------------CcCcccccchhhhhHhHHHH Q lcl|Aclame:pro 154 FYRITPDRNCGITEAVTVPAREVIHDRFNC------------------------------FFHPLIGLPPVYAAGLAATQ 203 (454) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~vih~~~~~------------------------------~~~~~~G~s~l~~~~~~i~~ 203 (454) .+.+..+..........+....+.++.... -.+...|.|-+..+...++. T Consensus 175 ~a~ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa 254 (474) T protein:vir:95 175 NAFIRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDA 254 (474) T ss_pred EEEEEEEeecCeeEEEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHH Confidence 111110000000001112222222221100 00223577777777777777 Q ss_pred HHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHH Q lcl|Aclame:pro 204 GHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMT 283 (454) Q Consensus 204 ~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~ 283 (454) .+.+.--..+.+...+.|-.++.- ...+........+ +..+++.++++.++.-+.....+..+....+.. T Consensus 255 ~d~~~S~~~~~~~~~~~p~lv~~g---~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l 324 (474) T protein:vir:95 255 IDKRLSDVQNMFDESVELIYILRG---YEGEDLSEFMEGL-------KYYKAINVSSDGGVETIQVEVPVASTKEYLDMM 324 (474) T ss_pred HHHHHHHHHHHHHHhhcchhhhcC---CCcccccchhhhh-------hccceeeccCCCceeEEeccCCHHHHHHHHHHH Confidence 665555555555555556555432 1212222222211 123456566655555555445556677788889 Q ss_pred HHHHHHHhccchhhhcccccccccCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhcCcccceeeecchh Q lcl|Aclame:pro 284 AEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ-------------QYYSQCLQTLIESIELLLDEALETGENESTEFDVTT 350 (454) Q Consensus 284 ~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~-------------~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~ 350 (454) .+.|+..-++|........ ++ .+..+... ..+...+..+++.|...+. .......+.+.|.. T Consensus 325 ~~~I~~~s~~p~~~~~~~~-~n-~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g---~~~d~~~i~i~f~~ 399 (474) T protein:vir:95 325 RAYIVEFGQGVDFQTDKFG-SA-TSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNK---IKLDAKEIEITFNF 399 (474) T ss_pred HHHHHHHhCCcCccccccc-cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcccceeeEEecC Confidence 9999999999865432211 11 11122111 1122222222222222111 11122345566666 Q ss_pred hhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCccc Q lcl|Aclame:pro 351 LLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAAS 430 (454) Q Consensus 351 l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (454) -+..+..+.++. +.++|+++...+++++++-..+ +.-+ ..+......... ..+...+.......++... T Consensus 400 ~~p~~~~e~a~~---~~~~giiS~et~~~~lp~v~D~--~~E~-----eri~~E~~~~~~-~~~~~~~~~~~~~~~~~~~ 468 (474) T protein:vir:95 400 NVMVNDLEQSQI---GAQSQYLSKETLVRHHPWVDDP--KAEL-----ERLDEEQLELNK-QLPNLDDGGADGAQQQQQS 468 (474) T ss_pred CCccCHHHHHHH---HHHcCCCChHHHHHhCCCCCCH--HHHH-----HHHHHHHHHHHh-hccccccccCCCCCCcCCC Confidence 666666666655 4557999988888887653221 1111 011000000000 0000000000011111111 Q ss_pred Cccccc Q lcl|Aclame:pro 431 DGNKAI 436 (454) Q Consensus 431 d~~~~~ 436 (454) +++++. T Consensus 469 ~~~e~~ 474 (474) T protein:vir:95 469 ENNQSK 474 (474) T ss_pred CccccC Confidence 111111 No 198 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=98.54 E-value=3.2e-07 Score=56.22 Aligned_cols=400 Identities=10% Similarity=-0.007 Sum_probs=177.6 Q ss_pred Ccchhh-hhccccccccc------cCcccchhhhh-----------hhhhhccccc----cCCccccHHHHHhhHHHHHH Q lcl|Aclame:pro 1 MWNLLR-RTRKNQKSGRD------VREAGWTSLFQ-----------AVAEPFAGAW----QQGVKADPEAVLSFHAVFAC 58 (454) Q Consensus 1 m~n~f~-r~~~~~~~~~~------~~~~~~~~~~~-----------~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~ 58 (454) |-.+=+ |.-......+- ........+.. -+...+-+.. .......+..-+.++....+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~ki~~n~~~~I 80 (470) T protein:vir:99 1 MKDINYGRDKVTGNSSFIFPKGEKLTSNELLGFIAYNETVLKPRYRENMKLYLGKHKILTAPEKETGADNRIVVNSAKYV 80 (470) T ss_pred CccccCCcccccCCceEEeCCCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccCcccccCCcceeecchHHHH Confidence 444321 21111110000 00000000000 0000000000 00000001111234567778 Q ss_pred HHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEe Q lcl|Aclame:pro 59 ISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRIL 138 (454) Q Consensus 59 i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l 138 (454) |+..+..+-+-|+.+...++ .. ....+..++.+ .........+..+.+.+|.+|+.+..+.+|.+ .+..+ T Consensus 81 vd~~~~~l~g~p~~~~~~~d-~~----~~~~l~~~~~~----n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~-~i~~~ 150 (470) T protein:vir:99 81 VDVYNGYFCGIEPKLALLND-SS----KIDEIARWNRQ----ENFFDTINEISKQCDIFGRSIASIYQGEDARP-HLMYS 150 (470) T ss_pred HHHHhhhhccCCeeEeeCCc-hh----HHHHHHHHHHh----cCHhHHHHHHHHHHHhcCeeEEEEEeCCCCeE-EEEEE Confidence 88888888777877643221 11 11122233222 25556778889999999999999888888876 57789 Q ss_pred cCcceEEEECCCCc--eeeE---Eecccccc-ccceeEEehhheEEeec----------------------CCCcCcccc Q lcl|Aclame:pro 139 DWNRVEPLVADDGE--VFYR---ITPDRNCG-ITEAVTVPAREVIHDRF----------------------NCFFHPLIG 190 (454) Q Consensus 139 ~~~~~~~~~~~~g~--~~~~---~~~~~~~~-~~~~~~~~~~~vih~~~----------------------~~~~~~~~G 190 (454) +|..+.+..+.... ..+. +....... ......+..+.++++.. ..-.+...| T Consensus 151 ~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g 230 (470) T protein:vir:99 151 SPNHAFIIYDDTVQRQPLAFVHYQIDNSNNWTDAYGVIQYADKFYKFKGYDIEEDTNAAGYAINPYGLVPAVEFFENEER 230 (470) T ss_pred ccceeEEEEcCCCCcceEEEEEEEEEecCCeeEEEEEEEecCeEEEEEecccccccccccccccCCCccceEeecCCCCC Confidence 99999988876432 1111 11100000 00000111111111110 001123468 Q ss_pred cchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceec-----CCCceee Q lcl|Aclame:pro 191 LPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAIL-----SNGAKYN 265 (454) Q Consensus 191 ~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~ 265 (454) .|-+..+...++..+.+.-.....+...+.|..++.--....++..+.. ..+.. .+++.+ +++.++. T Consensus 231 ~sd~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~g~~~~~~~~g~~~-~~~~~-------~~~~~~~~~~~~~~~~~~ 302 (470) T protein:vir:99 231 QGIFDSIKTLINALDKVISQKANQVEYFDNAYMYMIGFKLPEDDEGNPK-FDFKN-------NRVLYVSQLDPDTNPQIG 302 (470) T ss_pred CcchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccccccchh-hhhhh-------cceeeecCCCCCCCCcce Confidence 8888887777777777666666666777777777654322222211111 11111 122222 2344555 Q ss_pred eccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH-------------HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 266 PTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ-------------YYSQCLQTLIESIELLL 332 (454) Q Consensus 266 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~-------------~~~~~i~P~~~~ie~~l 332 (454) .+........+....+...+.|+..-++|....+... +|- +.++.... .+..++.-++..+...+ T Consensus 303 ~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~-~n~-Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~ 380 (470) T protein:vir:99 303 FIAKPDADQMQENLIQHLTDFIFMMAMVPNIQDKNFA-GNS-SGVALQYKLFAMKNKADSKERKFDKSLMQLYRIVLATL 380 (470) T ss_pred EEeecCChHHHHHHHHHHHHHHHHHhCCccccccccc-cCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 5554444555667788999999999999976443321 221 22222211 12222222222222222 Q ss_pred HHhhcCc-ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCC-CCCcccccccccccccccccccccc Q lcl|Aclame:pro 333 DEALETG-ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPP-LAGGDALYLQQQNYSLEALSRRDAR 410 (454) Q Consensus 333 ~~~l~~~-~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p-~~~~d~~~~~~~~~~~~~~~~~~~~ 410 (454) ...--.. ....+.+.|..-+..+..+.++.+.++. |+++...++++++.-. ..+.+.+ ..... ... T Consensus 381 ~~~~~~~~~~~~i~v~f~~~~p~~~~e~a~~~~kl~--giis~et~l~~l~~vd~~~E~eri---------~~E~~-~~~ 448 (470) T protein:vir:99 381 FNNKQDQELWSELDFKFTRNLPEDMASAIDNAKNAE--GIVSKKTQLGMIPDIEPDAEMKQI---------AKEKA-DAI 448 (470) T ss_pred hccCCcccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHHHHhCCCCCHHHHHHHH---------HHHHH-HHH Confidence 2111111 1234566777777888889999998885 7898877877775421 1111111 00000 000 Q ss_pred ccCCCccCcccCCCCCCcccCccccccccccc Q lcl|Aclame:pro 411 EDPFASSGKTASVPQAVAASDGNKAITETEHD 442 (454) Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 442 (454) +...+... ..+.... ..+.+.+ T Consensus 449 ~~~~~~~~---~~d~~~~-------d~~~ee~ 470 (470) T protein:vir:99 449 KQTQQLSM---PIDILKR-------DNNAEEE 470 (470) T ss_pred HHHHhhcC---CCCcCCC-------CCCccCC Confidence 00000000 0000000 0000000 No 199 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=98.51 E-value=4.1e-07 Score=55.60 Aligned_cols=355 Identities=10% Similarity=0.019 Sum_probs=166.0 Q ss_pred cchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccccc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~~ 81 (454) +|.+........+.+.-.. . ...+ +... ........-+...+...+|+.+++.+.=-.|. ..++ T Consensus 1 l~~~~~r~~~~~~yY~g~~----~-~~~~-----~~~~-p~~~~~~~~~v~nw~~~~Vds~a~rl~~~Gf~----~~d~- 64 (410) T protein:vir:95 1 MNLYQSRVNLRYKHYAMQH----Y-EAPT-----GITI-PAHIRAKYQAVLGWAAKGVDSLADRLIFRAFA----NDDF- 64 (410) T ss_pred CCcchhhHHHHHHHhcCCC----C-cccc-----chhc-cHHHHhHHHhhcchhHHHHHHhHhhhcccccc----CCCc- Confidence 5544322111111000000 0 0000 0000 00000001122355666777776654433332 1111 Q ss_pred ceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCC-ceeeEEecc Q lcl|Aclame:pro 82 RRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDG-EVFYRITPD 160 (454) Q Consensus 82 ~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g-~~~~~~~~~ 160 (454) .++.++.. | +.......+..+.+++|.+|+.+..+.+|.+ .+.+++|..+.+++|... .+.+.+... T Consensus 65 -------~l~~i~~~-N---~ld~~~~~~~~~al~~G~sf~~v~~~~d~~~-~i~~~sP~~~~~i~Dp~~~~~~~al~~~ 132 (410) T protein:vir:95 65 -------NVTEIFDR-N---NPDIFFDSAILSALIGSCSFVYISKGEDDEV-RLQVIESSNATGVIDPITGLLVEGYAVL 132 (410) T ss_pred -------hHHHHHhh-c---ChHHHHHHHHHHHHHhCceeEEEecCCCCce-EEEEEcccceEEEEeCCCCceEEEEEEE Confidence 13334332 2 2334566778889999999999988888875 678999999998887532 121111100 Q ss_pred ccccc------------------------cceeEEehhheEEeecCCCcCcccccch----hhhhHhHHHHHHHHHHHHH Q lcl|Aclame:pro 161 RNCGI------------------------TEAVTVPAREVIHDRFNCFFHPLIGLPP----VYAAGLAATQGHHIQENST 212 (454) Q Consensus 161 ~~~~~------------------------~~~~~~~~~~vih~~~~~~~~~~~G~s~----l~~~~~~i~~~~~~~~~~~ 212 (454) ..... ..+..+..-.+++|.+....+..+|.|- +..+.+.+.....-..... T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~l~~~~G~s~I~~~v~~l~da~~r~~~~~~~~~ 212 (410) T protein:vir:95 133 ARDDYNRPTLEAYFEPNATHFIPKDGEPYSVTNETGIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRTLERADITA 212 (410) T ss_pred EecCCCeEEEEEEEeCCcEEEEeeCCccccccCCCCCcceEEecccccCCccCCccccchhHHHHHHHHHHHHHHHHHHH Confidence 00000 0011112223566665555566788774 3444444444444444444 Q ss_pred HHHhccCCcceeE-ecCccCCHHHHHHHHHHHHHHhcCcccCCceecCC-----CceeeeccccchhhHHHHHHHHHHHH Q lcl|Aclame:pro 213 SFFRNGGRPSGVI-EIPGSITEENAKKLKSNWDSGYTGENAGKTAILSN-----GAKYNPTTFSPVDSQTVEQLKMTAEI 286 (454) Q Consensus 213 ~~~~ng~~p~~~l-~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~-----g~~~~~l~~~~~d~~~~e~~~~~~~~ 286 (454) .|+ +.|.-++ .++.+ ....+. |+.. .++++.++. +.++.++....-+ .|++.++....+ T Consensus 213 e~~---a~pqr~i~G~d~d--~~~~~~----~~~~-----~~~i~~~~~~~~~~~~~v~q~~~~~l~-~~~~~l~~l~~~ 277 (410) T protein:vir:95 213 EFY---SWPQKYILGLDPD--AEPMEK----WKAT-----VSSLLTISSSDKGVKPSVGQFTTASMS-PFTEQLRTAAAG 277 (410) T ss_pred HHh---cchhheeeccCCC--CCcCch----hhhh-----hhhheeccCCCCCCcceEEecCCCChH-HHHHHHHHHHHH Confidence 444 4454444 22221 111222 2221 234555542 3455555433222 488999999999 Q ss_pred HHHHhccchhhhcccccccccCHHHHHH---HHHHHHHHHHHHHHHHHHHH----hh-c-C------cccceeeecch-- Q lcl|Aclame:pro 287 VCSVFRVPAYKIGVGQPPSSDNVEALEQ---QYYSQCLQTLIESIELLLDE----AL-E-T------GENESTEFDVT-- 349 (454) Q Consensus 287 Ia~~fgvp~~~lg~~~~~~~~n~e~~~~---~~~~~~i~P~~~~ie~~l~~----~l-~-~------~~~~~~~f~~~-- 349 (454) |+.+=++|++.+|+... |-++.++... .+... +.-....+...+.+ .+ + . .......+.+. T Consensus 278 ~a~~s~lP~~~lg~~~~-NpsSa~Al~a~~~~L~~k-a~~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~v~W~p~ 355 (410) T protein:vir:95 278 FAGEMGLTLDDLGFVSD-NPSSVEAIKASHENLRLA-GRKAQRSLGAGLLNVAYVAACLRDEFRYTRSQFVRTAVKWEPL 355 (410) T ss_pred HhhhcCCCHHHhccccC-chhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccceeeEEeeec Confidence 99999999999997543 3333333221 11111 11111112222221 11 1 1 11223344444 Q ss_pred -hhhhcCHHHHHHHHHHHHhC--CCcCHHHHHHHhcCCCCCCcccccccccccccccccc Q lcl|Aclame:pro 350 -TLLRMDSERRMKTLGDAVKN--TLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSR 406 (454) Q Consensus 350 -~l~~~d~~~~~~~~~~~~~~--g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~ 406 (454) +....+..+.++++.+++++ |+....-+++++|+.+.+.. .....- ....+. T Consensus 356 ~d~~~~s~a~~aDa~~Kl~~a~~g~~~~~~~~~~lg~~~~~~~-~~~~~e----~~~~g~ 410 (410) T protein:vir:95 356 FEADANTMTMIGDGVVKLNQALPGYINAETIRDLTGIAGDMSA-KPVVSE----GGSNGE 410 (410) T ss_pred CCcchhhHHHHHHHHHHHHHhccCCccHHHHHHhcCCChHHHH-HHHHHH----HHhCCC Confidence 33344667788999999998 67777779999999754221 111000 000000 No 200 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=98.44 E-value=6.5e-07 Score=54.52 Aligned_cols=392 Identities=9% Similarity=-0.010 Sum_probs=167.8 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhcccccc---CCccc--cHHHHHhhHHHHHHHHHHHHhhcccceEEEe Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQ---QGVKA--DPEAVLSFHAVFACISLISQDIAKMRLRLMQ 75 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~ 75 (454) -..++.+......... .+.......+.+--........ ..... ....-+.++....+++..+..+-+-|+.+.. T Consensus 27 ~~~~i~~~i~~~~~~~-~~~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~ 105 (478) T protein:vir:10 27 QEEMILRLVREHKENI-DNITMGERYYNHHPDILDAPPKRDVNGDYDETKPDWRMYTNYHQNLVDQKVAYAVANPVTFGV 105 (478) T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCchhccccccccccccccccccceeccchHHHHHHHHHhhhccCCeeeec Confidence 0111111111000000 0000000000000000000000 00000 0000123456677888888888888877632 Q ss_pred ccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCC--Cce Q lcl|Aclame:pro 76 TDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADD--GEV 153 (454) Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~--g~~ 153 (454) .++ + ....+..++. | +..+....+..+++.+|.+|+.+..+.+|.+ .+..++|..+.+..+.. +.. T Consensus 106 ~~d--~----~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~~~~d~~g~~-~~~~~~p~~~~~i~d~~~~~~~ 173 (478) T protein:vir:10 106 DND--K----ALKQIQHTLN--H---KWDDKLVDILTAASNKGIEWVQPYVDEEGEF-KTFRVPAEQAVPIWTNKERDEL 173 (478) T ss_pred CCh--H----HHHHHHHHHh--c---CHHHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEEEcccceEEEEcCCCCCce Confidence 111 1 1112333332 2 3455667778889999999999888888875 57778999998887642 222 Q ss_pred eeEEeccccccccce---------------------------------------eEEehhheEEeecCCCcCcccccchh Q lcl|Aclame:pro 154 FYRITPDRNCGITEA---------------------------------------VTVPAREVIHDRFNCFFHPLIGLPPV 194 (454) Q Consensus 154 ~~~~~~~~~~~~~~~---------------------------------------~~~~~~~vih~~~~~~~~~~~G~s~l 194 (454) .+.+..+........ ..+..-.|++++ +...|.|-+ T Consensus 174 ~~~v~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~-----n~~~g~sd~ 248 (478) T protein:vir:10 174 QAFIRVYELDGAERVEYWTKDDVTYYELKEGQLIPDFYRSDDHIQPHYYQGNKLMSWGRVPFIPFK-----NNPQEVSDL 248 (478) T ss_pred EEEEEEEEecCceEEEEEeCCeEEEEEEcCCeeeccccccccccccceecccccccCCccceEEec-----cCCCCCCcH Confidence 111100000000000 111111234443 234678877 Q ss_pred hhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceec--CCCceeeeccccch Q lcl|Aclame:pro 195 YAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAIL--SNGAKYNPTTFSPV 272 (454) Q Consensus 195 ~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl--~~g~~~~~l~~~~~ 272 (454) ..+...++....+.-...+.+...+.|-.++.--.. . ........++ .++++.+ ++|.++.-+..... T Consensus 249 ~~v~~liDa~~~~~S~~~~~~~~~~~p~~~~~g~~~-~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~ 318 (478) T protein:vir:10 249 FMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEG-E--DMKDFMHNLK-------YYKAISVAGESGSGVDTIKVEVP 318 (478) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCc-c--ccchhhhhhh-------hcceEEecCCCCCcceEEeecCC Confidence 777777777776665555556666667655543221 1 1111111111 1223323 23344444444334 Q ss_pred hhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHH----HHHHh------hc--Ccc Q lcl|Aclame:pro 273 DSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIEL----LLDEA------LE--TGE 340 (454) Q Consensus 273 d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~----~l~~~------l~--~~~ 340 (454) ...+....+...+.|...-++|..-.+... +|- +..+. .+.-..+.-.+...+. .|.+. ++ ... T Consensus 319 ~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~-~n~-Sg~Al--~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~g~~~~ 394 (478) T protein:vir:10 319 IDSVKEYTKMLRDYIIEFGQGVDFQQDKFG-NSP-SGIAL--KFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLDVK 394 (478) T ss_pred hHHHHHHHHHHHHHHHHHhCccccCccccc-ccc-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc Confidence 556777788888899999998865432211 111 11221 1111122222222111 11111 11 112 Q ss_pred cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcc Q lcl|Aclame:pro 341 NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKT 420 (454) Q Consensus 341 ~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (454) ...+.+.|..-+..|..+.++.+.++ +|+++...+++++++-..+....-.+ ...... ..+... ...+. T Consensus 395 ~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~v~D~~~E~~ri-------~~E~~~-~~~~~~-~~~~~ 463 (478) T protein:vir:10 395 VQDIEITFNFNVMVNELENSQIAMNS--TGLLSKETILSNHAWVEDPVAEMERI-------EQENIE-LNQQLP-DIEEG 463 (478) T ss_pred cccceEEecCCCCCCHHHHHHHHHHH--hCCCChHHHHHhCCCCCCHHHHHHHH-------HHHHHH-HHhhcc-ccccc Confidence 22455666666778888899988887 68899888888887632211111011 000000 000000 00000 Q ss_pred cCCCCCCcccCccccc Q lcl|Aclame:pro 421 ASVPQAVAASDGNKAI 436 (454) Q Consensus 421 ~~~~~~~~~~d~~~~~ 436 (454) ... ..+..++.+++. T Consensus 464 ~~~-~~~~~~~~~~~~ 478 (478) T protein:vir:10 464 LNG-EQQRQSENNQPE 478 (478) T ss_pred cCC-CCCCCCCCCCCC Confidence 000 001111111111 No 201 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=98.41 E-value=2.8e-08 Score=62.03 Aligned_cols=183 Identities=8% Similarity=0.082 Sum_probs=94.8 Q ss_pred eEecCc--cCCHHHHHHHHHHHHHHhcC-cccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcc Q lcl|Aclame:pro 224 VIEIPG--SITEENAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGV 300 (454) Q Consensus 224 ~l~~~~--~~s~e~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~ 300 (454) |+++++ ...+.....+++++...... .+.+.+.+..++-+|..++.+... +-+......+.||++-|||...|-+ T Consensus 1 V~k~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ld~~~e~~e~~~~~lsG--l~d~l~~~~~~iaa~s~iP~t~LfG 78 (201) T protein:vir:10 1 MWKAKGLADLCDDSDGAARLRLAQVDNNSGVGQAIGIDADSEEYNVLNSDIGG--IDTFLSQKFDRIVALSGIHEIILKG 78 (201) T ss_pred CccchHHHHHhcCChHHHHHHHHHHHHhhhhhhhheeecCCcceeeeecCcCC--hHHHHHHHHHHHHhHhcCchhhhcC Confidence 444332 11111112333444322211 122334455555677777766664 3456788899999999999986655 Q ss_pred cccccc-cCHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHH-------HHHHH Q lcl|Aclame:pro 301 GQPPSS-DNVEALEQQYYSQ-------CLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRM-------KTLGD 365 (454) Q Consensus 301 ~~~~~~-~n~e~~~~~~~~~-------~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~-------~~~~~ 365 (454) .+.+.. ++.+....+||.. -++|.++++-.. +..+ ..+.|+|..|...+.++++ +++.+ T Consensus 79 ~sp~Glnatge~d~~nyyd~i~~~Qe~~l~p~le~l~~~----~~~~--~~~~~~f~pL~~~s~kekAei~~~~a~a~~~ 152 (201) T protein:vir:10 79 KNVGGVSASQNTALETFYGYVDRKRKAELLPLLEFLLPF----IVTE--QEWSVEFNPLSQVSDKDKSEILEKNVNSVAA 152 (201) T ss_pred CCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCC--CCceEeeCCCCCCCHHHHHHHHHHHHHHHHH Confidence 555444 3566666666653 344544443331 2222 3577888888777776654 56778 Q ss_pred HHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCccc Q lcl|Aclame:pro 366 AVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAAS 430 (454) Q Consensus 366 ~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (454) ++++|+++++|+|+.+--.+..+. ++.+.+.. +... + .....+..++++ T Consensus 153 ~~~~g~i~~~e~r~~L~~~~~~~~----~~~~~~~~------~~~~----~--e~~dp~~~~~~~ 201 (201) T protein:vir:10 153 LIAAGIIDADEARDTLRAISTEVK----IGEGSIQT------EVVI----N--ESEDPLDVSANN 201 (201) T ss_pred HHHcCCCCHHHHHHHHHhcCCcCC----CCCCCCCc------cccc----c--ccCCCCCCCCCC Confidence 889999999999998755432221 11111100 0000 0 000000011111 No 202 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=98.41 E-value=7.6e-07 Score=54.12 Aligned_cols=414 Identities=10% Similarity=0.004 Sum_probs=171.2 Q ss_pred Cc----------------chhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHH Q lcl|Aclame:pro 1 MW----------------NLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQ 64 (454) Q Consensus 1 m~----------------n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~ 64 (454) |. .++.+......... .+...+.....+.-........ .. .....-+..+....+|+..+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~~~~~l~~Yy~g~~~i~~~~~~-~~-~~~~~ki~~n~~~~Iv~~~~~ 77 (499) T protein:vir:10 1 MAVVIDKDLLDDVNEPNIEAINYAIRELQNRK-KRLDKLSDYYNGKQEIEKHEFD-NA-TVEAANVMVNHAKYITDMNVG 77 (499) T ss_pred CccchhhhHHhhhhcCCHHHHHHHHHHHHHHH-HHHHHHHHHhccccchhcCCcC-cC-CCCcceeecchHHHHHHHHhh Confidence 11 11221111100000 0000011111111000001000 00 001112224566778888888 Q ss_pred hhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCce------------ Q lcl|Aclame:pro 65 DIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQI------------ 132 (454) Q Consensus 65 ~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~------------ 132 (454) .+-+-|+.+...++ . ....+..++.. | ....+...+..+.+.+|.+|.++..+.+|.+ T Consensus 78 ~l~g~p~~~~~~~~--~----~~~~l~~~~~~-n---~~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~~~~~~~~~ 147 (499) T protein:vir:10 78 FMTGNPVKYVAEKG--K----NIDDILEVFNQ-I---DIHKHDIELEKDLSVFGYGYELLYLKKTDPISVRDELGNEKLT 147 (499) T ss_pred hhcccCceeecCCh--h----HHHHHHHHHhh-c---CHhHHHHHHHHHHHhcCceEEEEEecccccccccccccccccc Confidence 88888876542111 1 11122333222 2 3445677888889999999998877777643 Q ss_pred ----eEEEEecCcceEEEECCCCc------eeeEEecccccc--ccceeEEehhheEEeecCC----------------- Q lcl|Aclame:pro 133 ----KELRILDWNRVEPLVADDGE------VFYRITPDRNCG--ITEAVTVPAREVIHDRFNC----------------- 183 (454) Q Consensus 133 ----~~l~~l~~~~~~~~~~~~g~------~~~~~~~~~~~~--~~~~~~~~~~~vih~~~~~----------------- 183 (454) ..+..++|..+-+..+.... +.+++....... ......+.++.+.++.... T Consensus 148 ~~~~~~~~~v~p~~~~~v~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 227 (499) T protein:vir:10 148 PNTELKIEVIDPRATVVVCDDTVEHDPLFAVFTQEKKDLEGNTNGYSITVYMPQRIVEYRTKTTMEVSANDPIVYDGENL 227 (499) T ss_pred cccceEEEEEcccceEEEecCCCCcceEEEEEEEEEeecCCCceEEEEEEEeCCeEEEEEecCCccccCcceecccccCC Confidence 34667778777666654321 111111100000 0000112222222221000 Q ss_pred --------CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHH-HHHHHHHHHHHHhcCcccCC Q lcl|Aclame:pro 184 --------FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEE-NAKKLKSNWDSGYTGENAGK 254 (454) Q Consensus 184 --------~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e-~~~~~~~~~~~~~~g~n~g~ 254 (454) -.+...|.|-+..+...++..+.+.-...+.+...+.|-.++.-.....++ ..... +.+. T Consensus 228 ~g~vPvv~~~n~~~~~~d~e~v~~liD~~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~-----------~~~~ 296 (499) T protein:vir:10 228 FGAVPIIEFRNNEERQGDFEQLISLIDAYNLLQTDRISDKEAFVDALLVTFGFGLGDDKDDIQRL-----------KRGA 296 (499) T ss_pred CCccceEEecCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccccccchhhhh-----------hhcc Confidence 001234677777777777766666555555566666677666532211111 11111 1222 Q ss_pred cee--cCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHH-------------HHHHHHH Q lcl|Aclame:pro 255 TAI--LSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEAL-------------EQQYYSQ 319 (454) Q Consensus 255 ~~v--l~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~-------------~~~~~~~ 319 (454) +.. .++|.+++.+........+....+...+.|...-++|..-.+.. .++- +..+. ....+.. T Consensus 297 ~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-~gn~-Sg~Al~~~~~~l~~k~~~k~~~~~~ 374 (499) T protein:vir:10 297 IEAPPREEGADIEWLTKSFDETQVNLLSQSIENDIHKISYVPNMNDEKF-MGNV-SGEAMKFKLFGLENLLSIKQRYFFD 374 (499) T ss_pred eeccCCCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCcccCCchhh-cccc-hHHHHHHHHHHHHHHHHHHHHHHHH Confidence 333 24555666565544455567777888888888888875322111 1111 11121 1122233 Q ss_pred HHHHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCC--Cccccccccc Q lcl|Aclame:pro 320 CLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLA--GGDALYLQQQ 397 (454) Q Consensus 320 ~i~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~--~~d~~~~~~~ 397 (454) ++.-+++.|...++..-.......+.+.+..-+..+..+.++.+.++ .|+++..-++++++.-..+ +...+.-... T Consensus 375 ~l~~~~~li~~~~~~~~~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~l~~v~d~~~E~~ri~~E~~ 452 (499) T protein:vir:10 375 GLRRRLKLIQTIVNIKGANDDASGCKISLVANIPSNLSDVVNNVKNA--DGIIPRKYTYSWLPDVDNPQDVIDEMNQQDA 452 (499) T ss_pred HHHHHHHHHHHHHhccCCccccccceEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHH Confidence 33333333333322111111222456666666778899999999988 5789988888887653211 1111110000 Q ss_pred cccccccccccccccCCCc-cCcccCCCCCCcccCcccccccccc-cHH Q lcl|Aclame:pro 398 NYSLEALSRRDAREDPFAS-SGKTASVPQAVAASDGNKAITETEH-DAV 444 (454) Q Consensus 398 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~-~~~ 444 (454) ..............+... .+......+++ ..+++.....+++ .|+ T Consensus 453 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 499 (499) T protein:vir:10 453 -ETIKKNQEALRGQDPDRLELEDKQDDSSEN-DKEAGSNHNQSHRTRAV 499 (499) T ss_pred -HHHHHHHhhhccCCCCCCCCCCCCcccCCC-CCCCccccccCCCCCCC Confidence 000000000000000000 00000000100 0111111111122 222 No 203 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=98.36 E-value=1.1e-06 Score=53.30 Aligned_cols=389 Identities=10% Similarity=-0.018 Sum_probs=171.0 Q ss_pred Ccchhhhhcccccc---------ccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccce Q lcl|Aclame:pro 1 MWNLLRRTRKNQKS---------GRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRL 71 (454) Q Consensus 1 m~n~f~r~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~ 71 (454) ||++.+-..-.... ..-.+.........+.-..+......... +..-+..+.....|+..+..+-+-|+ T Consensus 8 ~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~--~~~ki~~n~~~~ivd~~~~~l~g~~~ 85 (452) T protein:vir:36 8 LMTFSKDEPITVEVVTKFMEKHKLEVARYEYLKNMYLGIMAIDDEPAKDSWK--PDNRLAVNFTKYIVDTFTGYFNGIPV 85 (452) T ss_pred eEEcCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCccccccC--ccceeecchHHHHHHHHhhhhcccCc Confidence 44433211100000 00000000001111110001111000000 01112346677788888888888887 Q ss_pred EEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCC Q lcl|Aclame:pro 72 RLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDG 151 (454) Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g 151 (454) .+...++ . ....+..++.. | ........+..+.+.+|.+|..+..+.+|.+ .+..++|..+.+..+... T Consensus 86 ~~~~~d~--~----~~~~l~~~~~~-n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~v~d~~~ 154 (452) T protein:vir:36 86 KKSHSDK--E----ILTKLQEFDNL-N---DMEDEESELAKMACIYGRAFEFLYQDEDTQT-NVVYNSPENMFMVYDDTV 154 (452) T ss_pred eeecCCh--h----HHHHHHHHHhh-c---ChhHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEEEcccceEEEEcCCC Confidence 7642211 1 11223333322 2 3445677788889999999999888888875 577789999888876532 Q ss_pred --ceeeE--EeccccccccceeEEehh-------------------------heEEeecCCCcCcccccchhhhhHhHHH Q lcl|Aclame:pro 152 --EVFYR--ITPDRNCGITEAVTVPAR-------------------------EVIHDRFNCFFHPLIGLPPVYAAGLAAT 202 (454) Q Consensus 152 --~~~~~--~~~~~~~~~~~~~~~~~~-------------------------~vih~~~~~~~~~~~G~s~l~~~~~~i~ 202 (454) ...+. +...... ......+..+ .|++++. ...|.|-+..+...++ T Consensus 155 ~~~~~~~i~~~~~~~~-~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----~~~g~sd~e~v~~liD 228 (452) T protein:vir:36 155 KQEPLFAVRYGVDEDK-KLQGEVYTLLETIKISGENDEISFGEGTYNPYPDLPVVEFYF-----NEERMSIFESVISLVN 228 (452) T ss_pred CCceEEEEEEEEecCc-eEEEEEEecCeEEEEEEcCCceEEecceeccCCcccEEEecC-----CCCCCcchHHHHHHHH Confidence 12111 1100000 0000011111 1233321 2357777776666666 Q ss_pred HHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecC-----CCceeeeccccchhhHHH Q lcl|Aclame:pro 203 QGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILS-----NGAKYNPTTFSPVDSQTV 277 (454) Q Consensus 203 ~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~-----~g~~~~~l~~~~~d~~~~ 277 (454) ....+.-...+.+...+.|..++.- ...+++....++. ++++.++ .+.++.-+........+. T Consensus 229 a~d~~~s~~~~~~~~~~~p~~~~~g-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 296 (452) T protein:vir:36 229 AFNKAISEKANDVDYFSDQYLTFLG-AAVEEEDLKNIRS-----------NRVINYYADGEGKNVDVKFLEKPDSDSQTE 296 (452) T ss_pred HHHHHHHHHHHHHHHhcCceeEeec-CCcCchhhhhhhh-----------cceEEecCCCCccCCcceeEeecCCHHHHH Confidence 6666655555556666667666543 2233333222211 1222222 122333344333455567 Q ss_pred HHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhcCccccee Q lcl|Aclame:pro 278 EQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ-------------QYYSQCLQTLIESIELLLDEALETGENEST 344 (454) Q Consensus 278 e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~-------------~~~~~~i~P~~~~ie~~l~~~l~~~~~~~~ 344 (454) ...+...+.|+..-++|..-.+.. ++- +.++... ..+..++..+++.|...++..-.......+ T Consensus 297 ~~~~~l~~~I~~~s~~p~~~~~~~--gn~-Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i 373 (452) T protein:vir:36 297 NLLDRLTKLIFQTTMVANISDESF--GSS-SGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLFCELSTNVSNKDSWKDI 373 (452) T ss_pred HHHHHHHHHHHHHhCccccCcccc--cCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccc Confidence 778888999999999986433221 221 2222111 112223333333333322211111122345 Q ss_pred eecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCC Q lcl|Aclame:pro 345 EFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVP 424 (454) Q Consensus 345 ~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (454) .+.+..-+..|..+.++.+.++ .|+++..-+.++++.-..+ +.-+ ..+...... ............ T Consensus 374 ~i~f~~~~p~d~~~~a~~~~k~--~g~iS~et~~~~~~~~~d~--~~E~-----~ri~~E~~~-~~~~~~~~~~~~---- 439 (452) T protein:vir:36 374 EYTFTRNEPKDIKEQAETANIL--MGITSQETALSVISVIPDV--QAEM-----EKIKKEEAS-TAIFDKDKQPSE---- 439 (452) T ss_pred eEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCH--HHHH-----HHHHHHHHH-HHHHHhhccCCC---- Confidence 6666777788899999998887 5789887788887653221 1111 011000000 000000000000 Q ss_pred CCCcccCccccccccccc Q lcl|Aclame:pro 425 QAVAASDGNKAITETEHD 442 (454) Q Consensus 425 ~~~~~~d~~~~~~~~~~~ 442 (454) ...+++ ..+++++ T Consensus 440 -~~~~~~----~~~~~~e 452 (452) T protein:vir:36 440 -KGTDTV----VSETNEE 452 (452) T ss_pred -Cccccc----CccccCC Confidence 000000 0001111 No 204 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=98.35 E-value=1.1e-06 Score=53.19 Aligned_cols=405 Identities=9% Similarity=0.034 Sum_probs=183.2 Q ss_pred Cc----chhhhhcccc--cccccc--------Ccccchhhhhhhhhhcccccc------CCccccHHHHHhhHHHHHHHH Q lcl|Aclame:pro 1 MW----NLLRRTRKNQ--KSGRDV--------REAGWTSLFQAVAEPFAGAWQ------QGVKADPEAVLSFHAVFACIS 60 (454) Q Consensus 1 m~----n~f~r~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~i~ 60 (454) || |||++....- +..... ...-+..+..|. ..+-+.+. .......+...+......+++ T Consensus 3 ~~~~~k~~~~k~~~~~~~~~~~~i~~~~~i~~~~~~~~~i~~~~-~~y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~~ 81 (522) T protein:vir:47 3 LFQKVKDFFSRGRYYMQTSNLNSILEHPKIAVTQEEYDRIKRNL-VYYQSKWDDVQYKNTDGDIKSRPMNHLPIARTASK 81 (522) T ss_pred hHHHHHHHHHHHHHHhhcccchhccccCCCCCCHHHHHHHHHHH-HHhcCCcccccccccCcchhcccceecchHHHHHH Confidence 33 3444333110 111000 000011111111 11111110 001111112222344455666 Q ss_pred HHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecC Q lcl|Aclame:pro 61 LISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDW 140 (454) Q Consensus 61 ~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~ 140 (454) ..|+-+..=|..+...+ ......+..++. .-.+...++..+...+..|.+++.+..+. |. ..+-.+++ T Consensus 82 ~~A~lv~~e~~~i~v~d------~~~~~~l~~~l~----~n~f~~~~~~~~e~a~a~G~~a~k~~~d~-~~-~~i~~v~a 149 (522) T protein:vir:47 82 KIASLVYNEQATITTKN------EILQKFLDDMLT----NDRFNKNFERYLESCLALGGLAMRPYIDG-DK-VRVAFIQA 149 (522) T ss_pred HHhhhhcCCcceeecCC------hHHHHHHHHHHh----hcchHHHHHHHHHHhhccCCEEEEEEEcC-Cc-eEEEEEcC Confidence 67766665454443211 111122233332 22344556667777788888877766553 33 34566666 Q ss_pred cceEEEE-CCCCc-----------------eeeE-----------------------Eec-------cccccccceeE-- Q lcl|Aclame:pro 141 NRVEPLV-ADDGE-----------------VFYR-----------------------ITP-------DRNCGITEAVT-- 170 (454) Q Consensus 141 ~~~~~~~-~~~g~-----------------~~~~-----------------------~~~-------~~~~~~~~~~~-- 170 (454) ..+-+.. +..+. ..|+ |+. ......|..+. T Consensus 150 d~~~P~~~~~~~~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~ 229 (522) T protein:vir:47 150 PVFFPLESNTQDVSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQRVNLS 229 (522) T ss_pred CceEEEEEcCCceEEEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccCcccccc Confidence 6666542 22211 0111 000 00000011110 Q ss_pred -------------E---ehhheEEeecCCCc----CcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCccee----Ee Q lcl|Aclame:pro 171 -------------V---PAREVIHDRFNCFF----HPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGV----IE 226 (454) Q Consensus 171 -------------~---~~~~vih~~~~~~~----~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~----l~ 226 (454) + +.--+.||+.+-+. +.++|+|.+..+...++..+........-|+.|-..-.+ +. T Consensus 230 ~~~e~~~l~~~~~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~ 309 (522) T protein:vir:47 230 ELDKYKNLEPVTVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQRRVIVPEHLTQ 309 (522) T ss_pred ccccccCCCCceEeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhc Confidence 0 00112355543221 346799999999999988887777766667765532111 22 Q ss_pred cCccCCH-H-HHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccc Q lcl|Aclame:pro 227 IPGSITE-E-NAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPP 304 (454) Q Consensus 227 ~~~~~s~-e-~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~ 304 (454) ....... + .....-+.-++.|.+-+. -.+++-.++.++....+-++.+..+...+.|+...|+++..+|...++ T Consensus 310 ~~~~~~~g~~~~~~~fd~~~~~f~~~~~----~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~~tf~~~~~~ 385 (522) T protein:vir:47 310 RQYQRPDGTIDFRPRFDVEQNVYMQIGG----SSMDAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSSGMFTFDGQG 385 (522) T ss_pred cCCCCCCcccccccccCcccceEeecCC----CCCCCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCccccCccccc Confidence 2111100 0 000000001111211000 012333466666666778899999999999999999999999986554 Q ss_pred cccCHHHH-------------HHHHHHHHHHHHHHHHHHHHHH-hhc---CcccceeeecchhhhhcCHHHHHHHHHHHH Q lcl|Aclame:pro 305 SSDNVEAL-------------EQQYYSQCLQTLIESIELLLDE-ALE---TGENESTEFDVTTLLRMDSERRMKTLGDAV 367 (454) Q Consensus 305 ~~~n~e~~-------------~~~~~~~~i~P~~~~ie~~l~~-~l~---~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~ 367 (454) ..|+.+. ....++.+|.-++..|....+. .++ ....+.+.+++++-+..|.++.++...+++ T Consensus 386 -~kTAtEi~s~~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~i~~D~~~~~~~~~~~v 464 (522) T protein:vir:47 386 -MKTATEIVSENSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGVYSGEIPELDDISVNLDDGVFTDRHAELDYWAKMV 464 (522) T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCCCCCCHHHHHHHHHHHH Confidence 3455544 2233344444444444433321 121 123456788999988999999999999999 Q ss_pred hCCCcCHHHHHHHh-cCCCCCCccccccccccccccccccccccccCC-CccCcccCCCCCCcccCccccc Q lcl|Aclame:pro 368 KNTLLTPNEARKRE-NLPPLAGGDALYLQQQNYSLEALSRRDAREDPF-ASSGKTASVPQAVAASDGNKAI 436 (454) Q Consensus 368 ~~g~~T~NE~R~~~-g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~ 436 (454) .+|+|+.-+++.+. |++. ++....+ + .+. ....+..+. ..... ..++....++... T Consensus 465 ~aG~~s~e~~i~~~~g~~e-eea~~el-~----ri~---~E~~~~~~~~~~~~~----~~~~~~~~~d~~~ 522 (522) T protein:vir:47 465 AAGFSTKKRAIGKTLNISG-VEAEKEL-N----AIN---SELLPMNDAELAIYG----MHDQNEEKADDKG 522 (522) T ss_pred hcCCCCHHHHHHhcCCCCh-HHHHHHH-H----HHH---HhhccCCCCCCCCCC----CCCcccccCCCCC Confidence 99999999987653 5422 1111111 1 111 100110000 00000 0111111122111 No 205 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=98.32 E-value=1.4e-06 Score=52.69 Aligned_cols=391 Identities=12% Similarity=0.089 Sum_probs=178.5 Q ss_pred Ccc----hhhhhcccc---ccc--------cccCcccchhhhhhhhhhccc-------cccCCccccHHHHHhhHHHHHH Q lcl|Aclame:pro 1 MWN----LLRRTRKNQ---KSG--------RDVREAGWTSLFQAVAEPFAG-------AWQQGVKADPEAVLSFHAVFAC 58 (454) Q Consensus 1 m~n----~f~r~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~ 58 (454) ||. ||+|.+... +.- ....+.-...+..|. ..+.+ ....+. ...+..........+ T Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~i~~~~-~~Y~g~~~~l~~~~~~~~-~~~~~~~slnl~~~i 80 (505) T protein:vir:79 3 FWDTLKNLFRKGSAAVGMTKSLGQIIDDPRINLPADEVERIARDK-RYYMDDFKQVTHKNSYGD-TQKHELQSVNVTKLA 80 (505) T ss_pred hHHHHHHHHHHhhhhhcchhhhhhhhcccCCCCCHHHHHHHHHHH-HHhcCCCccccccccCCC-ccccceeecchHHHH Confidence 554 444432211 110 111110000000011 00111 000010 001112222344556 Q ss_pred HHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEe Q lcl|Aclame:pro 59 ISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRIL 138 (454) Q Consensus 59 i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l 138 (454) ++..|+-+..=|..+...+ . .....+..++. .-.....++..+.+.+..|.+++.+..+. |. ..+..+ T Consensus 81 ~~~~A~ll~~e~~~i~~~d---~---~~~e~l~~i~~----~n~f~~~~~~~~e~a~a~G~~~~k~~~D~-~~-~~i~~v 148 (505) T protein:vir:79 81 SAKLASLIFNEQCQVTVSD---E---TANDFLDDVFQ----QNDFYTTFEEKLEEWIALGSGCVRPYVDS-GK-IKLAWA 148 (505) T ss_pred HHHHHhhhcCCCceeecCC---h---HHHHHHHHHHH----hccHHHHHHHHHHHHhhcCCeEEEEEEeC-Cc-eEEEEE Confidence 6777777766555443211 0 11112222222 22344556677788888899988776653 43 356677 Q ss_pred cCcceEEEECCCCce------------------eeE-----------Eecc-------cccccccee------------- Q lcl|Aclame:pro 139 DWNRVEPLVADDGEV------------------FYR-----------ITPD-------RNCGITEAV------------- 169 (454) Q Consensus 139 ~~~~~~~~~~~~g~~------------------~~~-----------~~~~-------~~~~~~~~~------------- 169 (454) +|..+-+...+.+.. .|+ |+.. .....|..+ T Consensus 149 ~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~~~l~~ 228 (505) T protein:vir:79 149 TADQVYPLQADTNQVNELAIASRTTEVENHRTIYYTLLEFHQWDHGDYVITNELYRSEAAETVGINVPLNSLEQYEGLEP 228 (505) T ss_pred cCCeeEEEEEcCCCeEEEEEEEEEEEecCCcceEEEEEEEEEecCceEEEEEEEEecCCCCccCcccchhhcccccccCc Confidence 787777653222210 110 0000 000001110 Q ss_pred --E---EehhheEEeecCCCc----CcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeE-----ecCccCCHHH Q lcl|Aclame:pro 170 --T---VPAREVIHDRFNCFF----HPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVI-----EIPGSITEEN 235 (454) Q Consensus 170 --~---~~~~~vih~~~~~~~----~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l-----~~~~~~s~e~ 235 (454) . ++..-+.||+.+.+. ..+.|+|.+..+...++..+........-|+.|-. ..++ ........+. T Consensus 229 ~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~-~i~v~~~~l~~~~~~~~~~ 307 (505) T protein:vir:79 229 QVKITGLKHPLFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKKGQR-RLIVPAEWLKTGSSYGGQA 307 (505) T ss_pred ceeecCCCcceEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhccc-ceeechHHhcccCCCCccc Confidence 0 111123455543222 23579999999999998888877777777776543 3222 1211111111 Q ss_pred HHHHHHHHH---HHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHH Q lcl|Aclame:pro 236 AKKLKSNWD---SGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEAL 312 (454) Q Consensus 236 ~~~~~~~~~---~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~ 312 (454) ...-...|. ..|.+ +..-+++..++.++....+-++.+..+...++|+...|+++..+|...++. .|+.+. T Consensus 308 ~~~~~~~fd~~~~~y~~-----~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei 381 (505) T protein:vir:79 308 SETHPPMFDPDETVYQA-----MYGDASEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQGTFTTSPSGI-QTATEV 381 (505) T ss_pred ccccccCCCccceeeee-----ccCCCCCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChhhcCCCcccc-chHHHH Confidence 000000010 01111 000122345677776667778899999999999999999999999766543 344443 Q ss_pred HHH-------------HHHHHHHHHHHHHHHHHHHhhcCc----------ccceeeecchhhhhcCHHHHHHHHHHHHhC Q lcl|Aclame:pro 313 EQQ-------------YYSQCLQTLIESIELLLDEALETG----------ENESTEFDVTTLLRMDSERRMKTLGDAVKN 369 (454) Q Consensus 313 ~~~-------------~~~~~i~P~~~~ie~~l~~~l~~~----------~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~ 369 (454) ... .++.+|..++..|........+.. ....+.|++++-+..|.++.++...+++.+ T Consensus 382 ~s~~~~l~~t~~~~~~~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~v~~ 461 (505) T protein:vir:79 382 VTNNSQTYQTRSSYITQVEKTIKALTYAILELASVPSFYADGQARWTGDVDSLDITINFNDGVFVDQESKRAADLQAVQA 461 (505) T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCceeEEEEeCCCCCCCHHHHHHHHHHHHHc Confidence 211 122333333333322221111111 124677889998899999999999999999 Q ss_pred CCcCHHHHHHHh-cCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccc Q lcl|Aclame:pro 370 TLLTPNEARKRE-NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNK 434 (454) Q Consensus 370 g~~T~NE~R~~~-g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 434 (454) |+|+.-+++... |++. ++..+.+ . .+........++. ... ++. T Consensus 462 Gi~s~e~~l~~~~~~~e-eea~~el-~----ri~~E~~~~~p~~--~~~--------------gg~ 505 (505) T protein:vir:79 462 QVMPKKQFLMRNYGLDE-EEADEWL-A----QIDAENSTAEPEF--NQF--------------GGD 505 (505) T ss_pred CCCCHHHHHHhcCCCCh-HHHHHHH-H----HHHHhccccCCCc--hhc--------------cCC Confidence 999998887653 4332 1111111 0 1110000000000 000 000 No 206 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=98.23 E-value=2.3e-06 Score=51.51 Aligned_cols=409 Identities=10% Similarity=-0.021 Sum_probs=166.9 Q ss_pred Ccchhhhhccc---cccccccCcccchhh-----------hhhhhhhccc--------cccCCccccHHHHHhhHHHHHH Q lcl|Aclame:pro 1 MWNLLRRTRKN---QKSGRDVREAGWTSL-----------FQAVAEPFAG--------AWQQGVKADPEAVLSFHAVFAC 58 (454) Q Consensus 1 m~n~f~r~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~ 58 (454) ++|++..+... +.....+.......+ +.-+...+-+ .........+..-+..+..... T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~li~~~~~~~~~r~~~l~~YY~g~~~~i~~~~~~~~~~~~~~~ki~~n~~~~I 81 (506) T protein:vir:94 2 DYDLTEHKQANLIYQESLENLTPNKIMKFITHHFNYQRPRLEMLDDYYQGYNLKILDKQSRRHEDGKADHRATHSFAKYI 81 (506) T ss_pred CcchhhhhcceeecccchhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccCCcceeecchHHHH Confidence 33322111000 000000000000000 0000000000 0000000001112345677778 Q ss_pred HHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEe Q lcl|Aclame:pro 59 ISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRIL 138 (454) Q Consensus 59 i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l 138 (454) |+..+..+-+-|+.+...++ . ....+..++.. | +.......+..+++.+|.+|+.+-.+.+|.+ .+.++ T Consensus 82 v~~~~~~l~G~p~~~~~~d~--~----~~~~l~~~~~~-N---~~~~~~~~~~~~~~~~G~a~~~v~~ded~~~-~i~~~ 150 (506) T protein:vir:94 82 ADFQTSYSVGNPINVKLPDD--G----SNSGFDTFNKA-N---DVDAENYDLFLDMSRYGRAYEYVYRGEDNEE-HLAKL 150 (506) T ss_pred HHHhhhhhcccCceeecCcc--h----HHHHHHHHHhc-c---CHhHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEEE Confidence 88888888888877642211 1 11223333322 2 3445667778889999999999888888865 56778 Q ss_pred cCcceEEEECCCC--ceeeEEec----ccccc-------------------------cc-----ceeEEehhheEEeecC Q lcl|Aclame:pro 139 DWNRVEPLVADDG--EVFYRITP----DRNCG-------------------------IT-----EAVTVPAREVIHDRFN 182 (454) Q Consensus 139 ~~~~~~~~~~~~g--~~~~~~~~----~~~~~-------------------------~~-----~~~~~~~~~vih~~~~ 182 (454) +|..+.+..+... ...+.+.. ..... .. ....+..-.+++++. T Consensus 151 ~p~~~~~v~dd~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~yt~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n- 229 (506) T protein:vir:94 151 DPLDTFVIYSTDVDPKPIMAVRYHQIELVDDNQVSTINYVPETWTADTYTLYNPTPIMGKMQVDTTKPITTFPVVEFKN- 229 (506) T ss_pred cccceEEEecCCCCCceEEEEEEEeeeeccCCceeEEEEEEEEEeCceEEEeccccCccceeccccccCCccceEEecC- Confidence 9988888876422 21111100 00000 00 000011111233321 Q ss_pred CCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccC---------------------CHHHHHHHHH Q lcl|Aclame:pro 183 CFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI---------------------TEENAKKLKS 241 (454) Q Consensus 183 ~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~---------------------s~e~~~~~~~ 241 (454) ...|.|-+......++..+.+.--..+.......|-.+++..... ..+....+.. T Consensus 230 ----~~~~~sd~e~~~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (506) T protein:vir:94 230 ----SNFRLGDFENVLPLIDLYDAAQSDTANYMTDLNEAMLIIQGDIDTLFEGSDMMNTIDPNDEDAMAKLAKDKLELIK 305 (506) T ss_pred ----CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCccccccchhccccccccccccccccccchhHHHh Confidence 124566666655555555444333333223222233222211000 0111111111 Q ss_pred HHHHHh--cCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHH------- Q lcl|Aclame:pro 242 NWDSGY--TGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEAL------- 312 (454) Q Consensus 242 ~~~~~~--~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~------- 312 (454) .+.... .-...+.+...+.+.++.-+........+....+.....|+..-++|..-.+... ++- +..+. T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~-~n~-Sg~Aik~~~~~l 383 (506) T protein:vir:94 306 EMKDANMLLLKSGMTVNGTQTSVDAKYINKTYDVVGSEAYKKRVAGDIHKFSHTPDLTDENFA-SNS-SGVAMQYKVLGT 383 (506) T ss_pred hhhhcCeeeecccccccCccccccceeeeecCCHHHHHHHHHHHHHHHHHHhCcccccccccc-ccc-hHHHHHHHHHHH Confidence 111110 0011111222233445555555555666777889999999999999974322111 111 11211 Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhh--cCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCC Q lcl|Aclame:pro 313 ------EQQYYSQCLQTLIESIELLLDEAL--ETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLP 384 (454) Q Consensus 313 ------~~~~~~~~i~P~~~~ie~~l~~~l--~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~ 384 (454) ...++...++.+++.|...++..- .......+.+.|..-+..|..+.++.+.++ .|+++...++++++.- T Consensus 384 ~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~lp~v 461 (506) T protein:vir:94 384 VELASTKRRMFERGLYARYQIISDIENSIHGDWTFDPQELTFTFRDNLPADNISQIKALVQA--GATLPQKYLYQQLPGV 461 (506) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCC Confidence 122233333344433333332110 011223456777777888999999998888 5899998898887553 Q ss_pred CCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccccccccccHHH Q lcl|Aclame:pro 385 PLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDAVK 445 (454) Q Consensus 385 p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 445 (454) ..+..+.- .+......... ........... .+..+.++ .++.+ +| T Consensus 462 ~d~~~E~~-------ri~~E~~~~~~-~~~~~~~~~~~-~~~~~~~~----~~~~e---~~ 506 (506) T protein:vir:94 462 TNPQDIVD-------MMKEQSANGDY-SFDQNGVISND-GQTNTTAT----QTDEE---VR 506 (506) T ss_pred CCHHHHHH-------HHHHHHHHHhh-cchhhcCCCcc-cCcccccc----ccccC---CC Confidence 22111100 11100000000 00000000000 00011000 00111 01 No 207 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=98.17 E-value=3.3e-06 Score=50.66 Aligned_cols=407 Identities=12% Similarity=0.126 Sum_probs=177.1 Q ss_pred Ccc----hhhhhcc-----cccc-----ccccCcccchhhhhhhhhhcccc--ccCCccc----cHHHHHhhHHHHHHHH Q lcl|Aclame:pro 1 MWN----LLRRTRK-----NQKS-----GRDVREAGWTSLFQAVAEPFAGA--WQQGVKA----DPEAVLSFHAVFACIS 60 (454) Q Consensus 1 m~n----~f~r~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~v~~~i~ 60 (454) ||. ||+|... +-.. ....+..-...+..|.. .+-+. +.....+ ..+...+-..-..+.+ T Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~w~~-~Y~g~~~~~~~~~~~~~~~~~~~~sl~~~~~i~~ 81 (517) T protein:vir:98 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLR-QYEGDYPQVEYINSQGKIQERDYMTLNLRKLSAD 81 (517) T ss_pred hHHHHHHHHHHHHHHhcccchhHhhcCCceecCHHHHHHHHHHHH-HhcCCCcccccccccccccccceeecCcHHHHHH Confidence 443 3333211 0010 01111100111111110 01010 0000000 0001111122233445 Q ss_pred HHHHhhcccceEEEecccccccee-hhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEec Q lcl|Aclame:pro 61 LISQDIAKMRLRLMQTDAQGIRRE-TRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILD 139 (454) Q Consensus 61 ~ia~~va~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~ 139 (454) .+|+-+..=+..+.-.+.++.... ........++.+--........++..+.+.+..|.+++.+..+. |. +.+.+++ T Consensus 82 ~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~-~~-~~I~~v~ 159 (517) T protein:vir:98 82 VLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GE-IEFSWAL 159 (517) T ss_pred HhhhhhcCCcceEEecccccccccccchhHHHHHHHHHHHhccHHHHHHHHHHHHhhhCCEEEEEEEeC-Ce-eEEEEEc Confidence 555555443434432222221111 11111222233222222344456666777788899888776654 33 3466677 Q ss_pred CcceEEEEC-CCCc-----------------eeeE------------------Ee-----cccccccccee--------- Q lcl|Aclame:pro 140 WNRVEPLVA-DDGE-----------------VFYR------------------IT-----PDRNCGITEAV--------- 169 (454) Q Consensus 140 ~~~~~~~~~-~~g~-----------------~~~~------------------~~-----~~~~~~~~~~~--------- 169 (454) +..+-+... .++. ..|+ +. .......|.++ T Consensus 160 ad~~~Pl~~~~~~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~~~y~I~n~ly~s~~~~~lG~~v~L~~~~e~l 239 (517) T protein:vir:98 160 ANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGM 239 (517) T ss_pred CCeeEEEEecCCCeEEEEEEEEEEEeecCCceEEEEEEEEecCceeccCCcEEEEEEEEecCCCccccccccccccccCC Confidence 776655322 2221 1111 00 00000011111 Q ss_pred ----EEeh---hheEEeecCCCc----CcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCH--HHH Q lcl|Aclame:pro 170 ----TVPA---REVIHDRFNCFF----HPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITE--ENA 236 (454) Q Consensus 170 ----~~~~---~~vih~~~~~~~----~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~--e~~ 236 (454) .++. --+.|++.+-+. +.++|+|.+..+...++..+........-|+.|-. ..+ ++..+-+ .+. T Consensus 240 ~~~~~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~e~~~g~~-~i~--vp~~~l~~~~~~ 316 (517) T protein:vir:98 240 QEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQR-TVF--VSDVMLRTVPDE 316 (517) T ss_pred CcceeECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHhCCc-cee--cChhhhccccCC Confidence 1110 112255543222 34579999999999998888777777777777543 322 2222110 000 Q ss_pred --HHHHHHHH---HHhcCcccCCceec-CCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHH Q lcl|Aclame:pro 237 --KKLKSNWD---SGYTGENAGKTAIL-SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVE 310 (454) Q Consensus 237 --~~~~~~~~---~~~~g~n~g~~~vl-~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e 310 (454) ......|. ..|.+ +-. +++-.++.++....+-++.+..+...++|+...|+++..+|....+. .|+. T Consensus 317 ~g~~~~~~~d~~~~~y~~------~~~~~~~~~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls~~t~~~~~~~~-kTAT 389 (517) T protein:vir:98 317 SGMPPPQVFDPDVNVYKS------IRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM-KTAT 389 (517) T ss_pred CCcccCCCCCcccceeee------ccCCCCCCceeeeccccchHHHHHHHHHHHHHHHHHhCCCccccccccccc-ccHH Confidence 00000000 00100 001 12234566666666778999999999999999999999999876543 3554 Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHh------------hcC---cccceeeecchhhhhcCHHHHHHHHHHHHhCCCcC Q lcl|Aclame:pro 311 ALEQQ--YYSQCLQTLIESIELLLDEA------------LET---GENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLT 373 (454) Q Consensus 311 ~~~~~--~~~~~i~P~~~~ie~~l~~~------------l~~---~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T 373 (454) +.... -.-.++.-+...++..|... ++. +..+.+.+++++-+..|.++.++...+++.+|+|+ T Consensus 390 Ei~s~~~~~~~t~~~~~~~~~~aL~~lv~~i~~l~~~~~~~~~~~~~~~~v~v~f~D~i~~D~~~~~~~~~~~v~aG~ms 469 (517) T protein:vir:98 390 EIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIP 469 (517) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEcCCCCCCCHHHHHHHHHHHHhcCCCC Confidence 43221 11123333333333333321 121 12456789999989999999999999999999999 Q ss_pred HHHHHHHh-cCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccccccccc Q lcl|Aclame:pro 374 PNEARKRE-NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETE 440 (454) Q Consensus 374 ~NE~R~~~-g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 440 (454) .-+++.++ |+.. ++..+.+ + .+... .....+. ...+ ...+....+.+ T Consensus 470 ~~~~i~~~~g~~e-eeA~~e~-~----~i~~E---~~~~~~~-~~~~----------~~~~~~~gd~e 517 (517) T protein:vir:98 470 TVEAIQRIFKVPK-KTAEQWL-E----EIRKD---QIELDPV-TISQ----------RAQKRMFGDEE 517 (517) T ss_pred HHHHHHHhCCCCh-HHHHHHH-H----HHHHh---ccccCCC-Cccc----------cccCCCCCCCC Confidence 99987654 7642 2121111 1 01000 0000000 0000 00001111111 No 208 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=98.10 E-value=4.6e-06 Score=49.85 Aligned_cols=388 Identities=10% Similarity=-0.006 Sum_probs=169.4 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccc--cCC---ccccHHHHHhhHHHHHHHHHHHHhhcccceEEEe Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAW--QQG---VKADPEAVLSFHAVFACISLISQDIAKMRLRLMQ 75 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~ 75 (454) ...++++......... .+..-....+.+--....... ... ....+..-+.++....+++..++.+-+-|+.+.. T Consensus 27 ~~~~i~~~i~~~~~~~-~~~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~ 105 (474) T protein:vir:96 27 QEEMIIRLINDHKPKI-DDITVGERYYNHDPDVLRLAPKLDNKGEIDPLKPDWRMFTNYHQNLVDQKVAYAVANPVTFSS 105 (474) T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHhccCCcchhccchhcccccccccccchhcccchHHHHHHhhhhhhcccCceeec Confidence 1222222221110000 000000000000000000000 000 0000111123566777888888888888877642 Q ss_pred ccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCC--Cce Q lcl|Aclame:pro 76 TDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADD--GEV 153 (454) Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~--g~~ 153 (454) .++ .....+..++. | +.......+..+++.+|.+|+.+-.+.+|.+ .+..++|..+.+..+.. +.. T Consensus 106 ~d~------~~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~~y~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~ 173 (474) T protein:vir:96 106 DDD------KSLKTIQEVLN--H---KWDDKLVDILTAASNKGIEWLQPYIDENGEF-KTFRVPAEQAIPIWTNKERDTL 173 (474) T ss_pred Cch------HHHHHHHHHHh--c---CHHHHHHHHHHHHHhcCeeEEEEEecCCCce-EEEEEcccceEEEEcCCCCCce Confidence 111 11223333433 2 2344456667888999999998888888875 47889999999887642 222 Q ss_pred eeEEeccccccccce---------------------------------------eEEehhheEEeecCCCcCcccccchh Q lcl|Aclame:pro 154 FYRITPDRNCGITEA---------------------------------------VTVPAREVIHDRFNCFFHPLIGLPPV 194 (454) Q Consensus 154 ~~~~~~~~~~~~~~~---------------------------------------~~~~~~~vih~~~~~~~~~~~G~s~l 194 (454) .+.+..+........ ..+..-.+++++. ...|.|-+ T Consensus 174 ~~~vr~~~~~~~~~~~~yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~g~sd~ 248 (474) T protein:vir:96 174 KAFIRYYRLDGAERVEYWTDSDVTYYEYQDGILIPDYYHGEEHIQSHYYVGNKRVSWGRVPFIPFKN-----NPQEMSDL 248 (474) T ss_pred EEEEEEEeecCceEEEEEeCCeEEEEEecCCceeeccccccccccccccccccccCCCceeEEEecc-----CCCCCCcH Confidence 111110000000000 1111112233332 23577878 Q ss_pred hhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecC-CCceeeeccccchh Q lcl|Aclame:pro 195 YAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILS-NGAKYNPTTFSPVD 273 (454) Q Consensus 195 ~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~d 273 (454) ..+...++..+.+.--..+.+...+.|-.++.--.. ++.+.+.. .. ...+++.++ +|.++..+...... T Consensus 249 e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~---~~~~~~~~----~~---~~~~~i~~~~~~~~~~~l~~~~~~ 318 (474) T protein:vir:96 249 FMYKTIIDAMDKRLSDTQNTFDESTELIYILKGYEG---QDLDEFMR----NL---KYYKAINVDGDGSGVDTIQIEVPV 318 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCc---ccccchhh----hh---hcCceEEecCCCCceeEEeecCCh Confidence 777777777776666666666777777666543221 11111111 11 123456554 45566655555455 Q ss_pred hHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhcCcc Q lcl|Aclame:pro 274 SQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ-------------YYSQCLQTLIESIELLLDEALETGE 340 (454) Q Consensus 274 ~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~-------------~~~~~i~P~~~~ie~~l~~~l~~~~ 340 (454) ..+.+..+...+.|+..-++|..-.+... +|- +..+.... ++...+.-+++.|...+. .... T Consensus 319 ~~~~~~~~~l~~~i~~~s~~p~~~~~~~~-~n~-Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~~~~---~~~~ 393 (474) T protein:vir:96 319 QSSKEYLDMLRDYVIEFGQGVDFQQDKFG-NSP-SGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYK---LNIK 393 (474) T ss_pred HHHHHHHHHHHHHHHHHhCCccccccccc-ccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcc Confidence 56677788999999999999975432211 111 12222111 111122222222221111 0111 Q ss_pred cceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCcc Q lcl|Aclame:pro 341 NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKT 420 (454) Q Consensus 341 ~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (454) ...+.+.|..-+..+..+.++ .+.++|+++...++++++.- ++.+.-.- .+..... +..+...+. .. T Consensus 394 ~~~i~i~f~~~~p~~~~e~~~---~~~~ag~iS~et~~~~~~~v--~d~~~E~~-----ri~~E~~-e~~~~~~~~-~~- 460 (474) T protein:vir:96 394 VQDVEITFNFNVMVNELEQSQ---IGVQSQYLSKETVVTNHPWV--DDPVAELE-----RIEQDNI-DFNKQLPPL-EG- 460 (474) T ss_pred cceeeEEeccCCCcCHHHHHH---HHHhcCCCchHHHHHhCCCC--CCHHHHHH-----HHHHHHH-HHHhccccc-cc- Confidence 223455555555666555554 45668999998888887543 22221110 0100000 000000000 00 Q ss_pred cCCCCCCcccCccccccccccc Q lcl|Aclame:pro 421 ASVPQAVAASDGNKAITETEHD 442 (454) Q Consensus 421 ~~~~~~~~~~d~~~~~~~~~~~ 442 (454) .... ...| .+.+.+ T Consensus 461 -~~~~--~~~d-----~~~e~~ 474 (474) T protein:vir:96 461 -DANG--RAQD-----NESETN 474 (474) T ss_pred -cccc--ccCC-----CcccCC Confidence 0000 0000 000111 No 209 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=98.02 E-value=6.7e-06 Score=48.94 Aligned_cols=396 Identities=9% Similarity=0.036 Sum_probs=179.6 Q ss_pred Ccchhhhhcccc--------------ccccccCcccchhhhhhhhhhcccc------ccCCccccHHHHHhhHHHHHHHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQ--------------KSGRDVREAGWTSLFQAVAEPFAGA------WQQGVKADPEAVLSFHAVFACIS 60 (454) Q Consensus 1 m~n~f~r~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~v~~~i~ 60 (454) ||+.++..++.- .....+.+.-...+..|.. .+.+. +........+...+......+++ T Consensus 3 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~-~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~~ 81 (500) T protein:vir:98 3 VIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLK-YYKSDWDSVLYLNTDGETKKRDLNHLPIARTAAK 81 (500) T ss_pred hHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHH-HhcCCCCCcccccCCCCcccCceeecchHHHHHH Confidence 665443332210 0011111110111111110 11110 00111111122223344455667 Q ss_pred HHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecC Q lcl|Aclame:pro 61 LISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDW 140 (454) Q Consensus 61 ~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~ 140 (454) ..|+-+..-|..+...+ . .....+..++. .-.+...++..+.+.+..|.+++.+..+. |. ..+..+++ T Consensus 82 ~~A~lv~~e~~~i~~~d---~---~~~~~l~~il~----~n~f~~~~~~~~e~a~a~G~~~~k~~~d~-~~-~~I~~v~a 149 (500) T protein:vir:98 82 KIASLVFNEQAEIKVDD---D---AANEFISETLK----NDRFNKNFERYLESCLALGGLAMRPYVDG-DK-VRVAFVQA 149 (500) T ss_pred HHhhhhcCCcceEecCC---h---HHHHHHHHHHh----hccHHHHHHHHHHHHhhcCCEEEEEEEeC-Cc-eEEEEEcC Confidence 77777766554443211 0 11112222222 22344556667777888898888776654 33 34677788 Q ss_pred cceEEEECC-CCc-----------------eeeE----Eecc-cc--------------ccccceeE------------- Q lcl|Aclame:pro 141 NRVEPLVAD-DGE-----------------VFYR----ITPD-RN--------------CGITEAVT------------- 170 (454) Q Consensus 141 ~~~~~~~~~-~g~-----------------~~~~----~~~~-~~--------------~~~~~~~~------------- 170 (454) ..+-+.... .+. ..|+ +... .. ...|..+. T Consensus 150 d~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~ 229 (500) T protein:vir:98 150 PVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAK 229 (500) T ss_pred CeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcceE Confidence 877764332 221 1110 0000 00 00011110 Q ss_pred ---EehhheEEeecCCC----cCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEe-----cCcc-CCHHHHH Q lcl|Aclame:pro 171 ---VPAREVIHDRFNCF----FHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIE-----IPGS-ITEENAK 237 (454) Q Consensus 171 ---~~~~~vih~~~~~~----~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~-----~~~~-~s~e~~~ 237 (454) ++.--+.||+.+.+ .+.++|+|.+..+...++..+........-++.|- ...++. .... .+.+... T Consensus 230 ~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~-~~i~v~~~~l~~~~~~~~g~~~~ 308 (500) T protein:vir:98 230 VTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQ-RRVAVPESLTALTVRTTDGDVVP 308 (500) T ss_pred eccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCc-ceeeechHHhcccCCCCCccccC Confidence 00011235543322 13457999999999999988888777777777643 333321 1110 0101000 Q ss_pred HHHHHHH-HHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHH--- Q lcl|Aclame:pro 238 KLKSNWD-SGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALE--- 313 (454) Q Consensus 238 ~~~~~~~-~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~--- 313 (454) ...-... +.|..-+ .-.+++..++.++....+-++.+..+...++|+...|+++..+|...++. .|+.+.. T Consensus 309 ~~~~d~~~~~~~~~~----~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~-~TAtei~s~~ 383 (500) T protein:vir:98 309 RPRFESDQNVYIRMG----GRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSM-KTATEIVSEN 383 (500) T ss_pred CcccCCCcceEEEcC----CCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCcc-ccHHHHHHHH Confidence 0000000 0110000 00122344666666666778999999999999999999999999876643 3444432 Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHH-hhcC---cccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHH Q lcl|Aclame:pro 314 ----------QQYYSQCLQTLIESIELLLDE-ALET---GENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARK 379 (454) Q Consensus 314 ----------~~~~~~~i~P~~~~ie~~l~~-~l~~---~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~ 379 (454) ...++.++.-++..|....+. .++. +..+.+.+++++-+..|.++.++...+++.+|+|+.-+++. T Consensus 384 ~~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~ 463 (500) T protein:vir:98 384 SDTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQ 463 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHH Confidence 112223333333333322111 1111 23456778888888899999999999999999999999875 Q ss_pred Hh-cCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccc Q lcl|Aclame:pro 380 RE-NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNK 434 (454) Q Consensus 380 ~~-g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 434 (454) +. |++. ++..+.+-. + .....++... ..+..+-.++ T Consensus 464 ~~~g~~e-eea~~~l~~-----i---~~E~~~~~~~----------~~~~~~~~g~ 500 (500) T protein:vir:98 464 KVLNVTE-EKAQEIAAE-----I---NTGIVDEINQ----------QRTDTHLYGE 500 (500) T ss_pred hcCCCCH-HHHHHHHHH-----H---HHhccccCCC----------CCccccccCC Confidence 53 5432 111111100 0 0000000000 0000000000 No 210 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=98.02 E-value=6.7e-06 Score=48.94 Aligned_cols=396 Identities=9% Similarity=0.036 Sum_probs=179.6 Q ss_pred Ccchhhhhcccc--------------ccccccCcccchhhhhhhhhhcccc------ccCCccccHHHHHhhHHHHHHHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQ--------------KSGRDVREAGWTSLFQAVAEPFAGA------WQQGVKADPEAVLSFHAVFACIS 60 (454) Q Consensus 1 m~n~f~r~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~v~~~i~ 60 (454) ||+.++..++.- .....+.+.-...+..|.. .+.+. +........+...+......+++ T Consensus 3 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~-~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~~ 81 (500) T protein:vir:30 3 VIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLK-YYKSDWDSVLYLNTDGETKKRDLNHLPIARTAAK 81 (500) T ss_pred hHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHH-HhcCCCCCcccccCCCCcccCceeecchHHHHHH Confidence 665443332210 0011111110111111110 11110 00111111122223344455667 Q ss_pred HHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecC Q lcl|Aclame:pro 61 LISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDW 140 (454) Q Consensus 61 ~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~ 140 (454) ..|+-+..-|..+...+ . .....+..++. .-.+...++..+.+.+..|.+++.+..+. |. ..+..+++ T Consensus 82 ~~A~lv~~e~~~i~~~d---~---~~~~~l~~il~----~n~f~~~~~~~~e~a~a~G~~~~k~~~d~-~~-~~I~~v~a 149 (500) T protein:vir:30 82 KIASLVFNEQAEIKVDD---D---AANEFISETLK----NDRFNKNFERYLESCLALGGLAMRPYVDG-DK-VRVAFVQA 149 (500) T ss_pred HHhhhhcCCcceEecCC---h---HHHHHHHHHHh----hccHHHHHHHHHHHHhhcCCEEEEEEEeC-Cc-eEEEEEcC Confidence 77777766554443211 0 11112222222 22344556667777888898888776654 33 34677788 Q ss_pred cceEEEECC-CCc-----------------eeeE----Eecc-cc--------------ccccceeE------------- Q lcl|Aclame:pro 141 NRVEPLVAD-DGE-----------------VFYR----ITPD-RN--------------CGITEAVT------------- 170 (454) Q Consensus 141 ~~~~~~~~~-~g~-----------------~~~~----~~~~-~~--------------~~~~~~~~------------- 170 (454) ..+-+.... .+. ..|+ +... .. ...|..+. T Consensus 150 d~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~ 229 (500) T protein:vir:30 150 PVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAK 229 (500) T ss_pred CeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcceE Confidence 877764332 221 1110 0000 00 00011110 Q ss_pred ---EehhheEEeecCCC----cCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEe-----cCcc-CCHHHHH Q lcl|Aclame:pro 171 ---VPAREVIHDRFNCF----FHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIE-----IPGS-ITEENAK 237 (454) Q Consensus 171 ---~~~~~vih~~~~~~----~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~-----~~~~-~s~e~~~ 237 (454) ++.--+.||+.+.+ .+.++|+|.+..+...++..+........-++.|- ...++. .... .+.+... T Consensus 230 ~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~-~~i~v~~~~l~~~~~~~~g~~~~ 308 (500) T protein:vir:30 230 VTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQ-RRVAVPESLTALTVRTTDGDVVP 308 (500) T ss_pred eccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCc-ceeeechHHhcccCCCCCccccC Confidence 00011235543322 13457999999999999988888777777777643 333321 1110 0101000 Q ss_pred HHHHHHH-HHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHH--- Q lcl|Aclame:pro 238 KLKSNWD-SGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALE--- 313 (454) Q Consensus 238 ~~~~~~~-~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~--- 313 (454) ...-... +.|..-+ .-.+++..++.++....+-++.+..+...++|+...|+++..+|...++. .|+.+.. T Consensus 309 ~~~~d~~~~~~~~~~----~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~-~TAtei~s~~ 383 (500) T protein:vir:30 309 RPRFESDQNVYIRMG----GRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSM-KTATEIVSEN 383 (500) T ss_pred CcccCCCcceEEEcC----CCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCcc-ccHHHHHHHH Confidence 0000000 0110000 00122344666666666778999999999999999999999999876643 3444432 Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHH-hhcC---cccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHH Q lcl|Aclame:pro 314 ----------QQYYSQCLQTLIESIELLLDE-ALET---GENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARK 379 (454) Q Consensus 314 ----------~~~~~~~i~P~~~~ie~~l~~-~l~~---~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~ 379 (454) ...++.++.-++..|....+. .++. +..+.+.+++++-+..|.++.++...+++.+|+|+.-+++. T Consensus 384 ~~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~ 463 (500) T protein:vir:30 384 SDTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQ 463 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHH Confidence 112223333333333322111 1111 23456778888888899999999999999999999999875 Q ss_pred Hh-cCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccc Q lcl|Aclame:pro 380 RE-NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNK 434 (454) Q Consensus 380 ~~-g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 434 (454) +. |++. ++..+.+-. + .....++... ..+..+-.++ T Consensus 464 ~~~g~~e-eea~~~l~~-----i---~~E~~~~~~~----------~~~~~~~~g~ 500 (500) T protein:vir:30 464 KVLNVTE-EKAQEIAAE-----I---NTGIVDEINQ----------QRTDTHLYGE 500 (500) T ss_pred hcCCCCH-HHHHHHHHH-----H---HHhccccCCC----------CCccccccCC Confidence 53 5432 111111100 0 0000000000 0000000000 No 211 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=98.02 E-value=7e-06 Score=48.85 Aligned_cols=395 Identities=9% Similarity=-0.010 Sum_probs=165.3 Q ss_pred Ccc-----------hhhhhccccccccccCcccchhhhhhhhhhcccccc-----CCccccHHHHHhhHHHHHHHHHHHH Q lcl|Aclame:pro 1 MWN-----------LLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQ-----QGVKADPEAVLSFHAVFACISLISQ 64 (454) Q Consensus 1 m~n-----------~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~i~~ia~ 64 (454) |+. ++.+......... .+..-....+.+--..+..... ......+..-+.++....+++..+. T Consensus 16 ~~~~~~~~~~~~~~~i~~~i~~~~~~~-~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~ivd~~~~ 94 (478) T protein:vir:10 16 VVEQIKPKYETQEEMILRLVREHKENI-DNITMGERYYNHHPDILDAPFKRDVNGDYDETKPDWRMYTNYHQNLVDQKVA 94 (478) T ss_pred HHHHhhhccCChHHHHHHHHHHHHHHH-HHHHHHHHHhcccccccccchhhhcccccccccccceeccchHHHHHHHHhh Confidence 111 1111111100000 0000000000000000000000 0000000011235667788899999 Q ss_pred hhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceE Q lcl|Aclame:pro 65 DIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVE 144 (454) Q Consensus 65 ~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~ 144 (454) .+-+-|+.+...++ . ....+..++. | ........+..+.+.+|.+|+.+-.+.+|.+ .+..++|..+. T Consensus 95 yl~g~p~~~~~~~~--~----~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~~~~~~p~~~~ 162 (478) T protein:vir:10 95 YAVANPVTFGVDND--K----ALKQIQHTLN--H---KWDDKLVDILTAASNKGIEWVQPYVDEEGEF-KTFRVPAEQAV 162 (478) T ss_pred hhcccCceeecCCh--H----HHHHHHHHHh--c---cHHHHHHHHHHHHhhCCeEEEEEEecCCCce-EEEEEcccceE Confidence 99888887642111 1 1112223332 2 4456667778889999999998888888865 57788998888 Q ss_pred EEECC--CCceeeEEeccccccccceeEEehhheEEeecCC-------------------------C---------cCcc Q lcl|Aclame:pro 145 PLVAD--DGEVFYRITPDRNCGITEAVTVPAREVIHDRFNC-------------------------F---------FHPL 188 (454) Q Consensus 145 ~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~-------------------------~---------~~~~ 188 (454) +..+. .+...+.+..+..........+..+.+.++.... + .+.. T Consensus 163 ~v~d~~~~~~~~~~ir~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~ 242 (478) T protein:vir:10 163 PIWTNKERDELQAFIRVYELDGAERVEYWTKDDVTFYELKEGQLIPDFYRSEDHIQPHYYQGNKLMSWGRVPFIPFKNNP 242 (478) T ss_pred EEEcCCCCCceEEEEEEEeeeCceEEEEEeCCcEEEEEecCCeeeccccccccccccceecccccccCCcceEEEeccCC Confidence 87753 2332221111000000011112222222221100 0 0123 Q ss_pred cccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceec--CCCceeee Q lcl|Aclame:pro 189 IGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAIL--SNGAKYNP 266 (454) Q Consensus 189 ~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl--~~g~~~~~ 266 (454) .|.|-+..+...++..+.+.-...+.+...+.|-.++.--.. +........++. .+++.+ ++|.++.- T Consensus 243 ~g~sd~e~v~~liDa~~~~~S~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 312 (478) T protein:vir:10 243 QEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEG---EDMKDFMHNLKY-------YKAISVAGESGSGVDT 312 (478) T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCCc---ccccchhhhhhh-------CceeEecCCCCCcceE Confidence 577777777777776666555555555555556555433211 111111111111 123333 23334444 Q ss_pred ccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH-------------HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 267 TTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ-------------YYSQCLQTLIESIELLLD 333 (454) Q Consensus 267 l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~-------------~~~~~i~P~~~~ie~~l~ 333 (454) +........+.+..+...+.|+..-++|..-.+... ++- +..+.... .+...++-+++.|...++ T Consensus 313 l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~-~n~-Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~ 390 (478) T protein:vir:10 313 IKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKFG-NSP-SGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYR 390 (478) T ss_pred EeecCCHHHHHHHHHHHHHHHHHHhCCcCcCccccc-cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC Confidence 444445556777888899999999999864322211 111 11221111 111222222222222111 Q ss_pred HhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccC Q lcl|Aclame:pro 334 EALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDP 413 (454) Q Consensus 334 ~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 413 (454) . ......+.+.|..-+..+..+.++.+.++ .|+++...+.++++.- ++.+.-+ ..+...... ... . T Consensus 391 ~---~~d~~~i~i~f~~~~p~~~~e~~~~~~~~--~g~iS~et~i~~~~~v--~d~~~E~-----~ri~~E~~~-~~~-~ 456 (478) T protein:vir:10 391 L---DVRVQDIEITFNFNVMVNELENSQIAMNS--TGLLSKETILGNHSWV--QDPVAEM-----ERIEQENIE-LNQ-Q 456 (478) T ss_pred C---CcccccceEEeCCCCCCCHHHHHHHHHHH--hCCCChHHHHHhCCCC--CCHHHHH-----HHHHHHHHH-HHH-h Confidence 0 11122455666666778888888888776 5888877777777542 2211110 000000000 000 0 Q ss_pred CCccCcccC-CCCCCcccCccc Q lcl|Aclame:pro 414 FASSGKTAS-VPQAVAASDGNK 434 (454) Q Consensus 414 ~~~~~~~~~-~~~~~~~~d~~~ 434 (454) .....+... ...+...+++.+ T Consensus 457 ~~~~~~~~~d~~~~~~~d~~~e 478 (478) T protein:vir:10 457 LPDIEEGLNDEQQRQSEDNQSE 478 (478) T ss_pred ccccCCCCcccccccCcCCCCC Confidence 000001000 111111111111 No 212 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=98.00 E-value=7.7e-06 Score=48.62 Aligned_cols=400 Identities=9% Similarity=-0.039 Sum_probs=174.0 Q ss_pred cchh-------hhhcccccc--ccccC-------cccc--hhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHH Q lcl|Aclame:pro 2 WNLL-------RRTRKNQKS--GRDVR-------EAGW--TSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLIS 63 (454) Q Consensus 2 ~n~f-------~r~~~~~~~--~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia 63 (454) +++| +.+.+-.+. ..... .... .....+....+......+ +.. .-++.+.-..+++.+| T Consensus 1 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~-~~~~~~l~~~i~~~~A 77 (518) T protein:vir:78 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPT--VHD-KLMNSGTGNEIVVVAA 77 (518) T ss_pred CcchhhHHHHHHHhhcCCCCccchhccHHHhhhcccchhhhhhhhhhhhhcccCCCCc--ccc-ccccCChHHHHHHHHH Confidence 2222 222211111 00000 0000 000111111111111111 111 1223334456778888 Q ss_pred HhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcce Q lcl|Aclame:pro 64 QDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRV 143 (454) Q Consensus 64 ~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~ 143 (454) +.|..=+..+-....+....+.....+..++.. -.+..-+...+.+.+..|.+++.+..+ +|.+ .+..+++..+ T Consensus 78 ~ll~~e~~~i~v~~~~~~d~e~~~~~l~~il~~----n~f~~~~~~~~e~a~a~G~~~~k~~~d-~~~~-~i~~v~ad~~ 151 (518) T protein:vir:78 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALRI----DNFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQF 151 (518) T ss_pred HhhcCCCceEEecCccccCcHHHHHHHHHHHHh----ccHHHHHHHHHHHhhccCceEEEEEEE-CCee-EEEEEcCCee Confidence 888766555432222221111111222333322 233344555677778888888766544 4553 5677788777 Q ss_pred EEEECCCCc----------------eeeEEe-----------------------ccccccccceeE-------------E Q lcl|Aclame:pro 144 EPLVADDGE----------------VFYRIT-----------------------PDRNCGITEAVT-------------V 171 (454) Q Consensus 144 ~~~~~~~g~----------------~~~~~~-----------------------~~~~~~~~~~~~-------------~ 171 (454) -+.... |. ..|+.. -+... .+..+. . T Consensus 152 ~P~~~~-g~~~~~~f~~~~~~~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~-~~~~v~~~~~~~~~~l~~~~ 229 (518) T protein:vir:78 152 WIDFKN-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKID-GDKTTPISAERLPEQITSYL 229 (518) T ss_pred EEEeec-CcEEEEEEEEEeecCCcceeEEEEEeeccccccceeecccceeEEEEEeeec-Cccccccccccccccccccc Confidence 775432 21 111100 00000 000000 0 Q ss_pred e--------------hhh-eEEeecCCC----cCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEec---Cc Q lcl|Aclame:pro 172 P--------------ARE-VIHDRFNCF----FHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEI---PG 229 (454) Q Consensus 172 ~--------------~~~-vih~~~~~~----~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~---~~ 229 (454) . ..- +.|++...+ .+.++|+|.+..+...++..+........-|+. +.+..++.- +. T Consensus 230 ~~~~~~e~~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~-g~~~i~v~~~~l~~ 308 (518) T protein:vir:78 230 HTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEK-TKTKIAASERMFRK 308 (518) T ss_pred ccccCccceeeccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHHHh-CCceeeechhHhcc Confidence 0 011 122232111 133569999999999999888888777777776 445544421 00 Q ss_pred cCCHHHHHHHHHHHHHHhcCcccCCce--ecCCCc----eeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccc Q lcl|Aclame:pro 230 SITEENAKKLKSNWDSGYTGENAGKTA--ILSNGA----KYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP 303 (454) Q Consensus 230 ~~s~e~~~~~~~~~~~~~~g~n~g~~~--vl~~g~----~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~ 303 (454) ........ ..-.|. .+.+.-..+ -.++|. .++.++....+.++.+..+...+.|....|+++..+|.... T Consensus 309 ~~~~~~~~-~~~~fd---~~~~~y~~i~~~~~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G~s~~tfg~~~~ 384 (518) T protein:vir:78 309 KVNKSTDK-EEWSMN---VDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNR 384 (518) T ss_pred CCCCCCCc-cccccC---CCCceEEEecCcCCCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhCCChhhcCcccc Confidence 00000000 000000 000100000 011222 25666666677789999999999999999999999986432 Q ss_pred ccccCHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhc------CcccceeeecchhhhhcCHHHHHHHHH Q lcl|Aclame:pro 304 PSSDNVEALE-------------QQYYSQCLQTLIESIELLLDEALE------TGENESTEFDVTTLLRMDSERRMKTLG 364 (454) Q Consensus 304 ~~~~n~e~~~-------------~~~~~~~i~P~~~~ie~~l~~~l~------~~~~~~~~f~~~~l~~~d~~~~~~~~~ 364 (454) . . ++.+.. ...++.++.-++..|...+..... ......+.+++++-+..|.++.++... T Consensus 385 ~-~-TATei~s~~~~~~~t~~~~~~~~e~al~~l~~~i~~l~~~~~~~~~~~~~~~~~~v~i~f~D~i~~D~~~~~~~~~ 462 (518) T protein:vir:78 385 E-V-KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLN 462 (518) T ss_pred c-c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCCceeEEEEeCCCCCCCHHHHHHHHH Confidence 2 1 222111 111222222222222222211110 112346788999999999999999999 Q ss_pred HHHhCCCcCHHHHHHHhcCCCC-CCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 365 DAVKNTLLTPNEARKRENLPPL-AGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 365 ~~~~~g~~T~NE~R~~~g~~p~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) +++.+|+|+..++-+++...-. ++.++.+. .+........++. +....+ -+..++ T Consensus 463 ~~v~aGimS~e~~i~~~~~~~~deea~~e~~-----ri~~E~~~~~~~~-p~~~~g--------~~~~~g 518 (518) T protein:vir:78 463 NMNSALAMSVEEKVKLIHPKWEDEEIQAEVK-----RIYLENAIGEVPD-PEAIGG--------METKGG 518 (518) T ss_pred HHHhcCCCCHHHHHHHhCCCCCHHHHHHHHH-----HHHHHhcccCCCC-CccccC--------CCCCCC Confidence 9999999999886665532211 11111110 0100000000000 000000 000000 No 213 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=97.82 E-value=1.7e-05 Score=46.71 Aligned_cols=413 Identities=8% Similarity=-0.019 Sum_probs=170.7 Q ss_pred Ccchhhhhccccc-cccccCcccchhhhhhhhhhcccc-ccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQK-SGRDVREAGWTSLFQAVAEPFAGA-WQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDA 78 (454) Q Consensus 1 m~n~f~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~ 78 (454) +-+.+.......- ..... ..+-..+...-.-..... ........+..-+.+....-.++..++-+-+.|+.+...+. T Consensus 21 i~~~~~~~~~~~~~~~~~Y-Y~g~h~Il~r~~~~~~~~~~~~~d~~~~nnki~~nf~k~Ivd~~~~yl~G~Pv~~~~~d~ 99 (537) T protein:vir:78 21 ITTYMASNHIKWAHIGENY-YNQENDIEKSRIFYMNDKGQLREDNYASNVKISHGFFTELVDQLAQYLLSNGVEVKVKDE 99 (537) T ss_pred HHHHHHHHHHHHHHHHHHH-hcccchhhhcccccccccccccccccccccccccchHHHHHHHHhhhhcccCceeecCcc Confidence 2222211111000 00000 001111111000000000 00000000111123445566778888888888887642221 Q ss_pred cccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCCCceee--- Q lcl|Aclame:pro 79 QGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFY--- 155 (454) Q Consensus 79 ~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~g~~~~--- 155 (454) +.. . ....+..++. .........+..++..+|.+|.++-.+.+|.+ .+..++|..+-++.+..+.... T Consensus 100 ~~~--e-~~~~l~~~~~-----~~~~~~~~el~~~~s~~G~ay~~~y~de~~~~-~~~~i~p~~~~pv~d~~~~~~~~~~ 170 (537) T protein:vir:78 100 DNT--Q-LDEILQEYFD-----EDFQATIDTLVTNASKKGFEGIFARTTSEGKL-KFQTVDGLTLIPVFDDYGVLKMIIR 170 (537) T ss_pred hhH--H-HHHHHHHHhh-----ccHHHHHHHHHHHHhhcCeeEEEeeecCCCce-EEEEEccceeEEEEcCCCCceeEEE Confidence 111 0 1111222221 23334566777889999999999888888865 4678899888888876554211 Q ss_pred -EEecccccc--c----cceeEEehhheEEeecCCC-------------------------------------------- Q lcl|Aclame:pro 156 -RITPDRNCG--I----TEAVTVPAREVIHDRFNCF-------------------------------------------- 184 (454) Q Consensus 156 -~~~~~~~~~--~----~~~~~~~~~~vih~~~~~~-------------------------------------------- 184 (454) ++....... . .....+.++.+.+++.... T Consensus 171 ~y~~~~~~~~~~~~~~~~~~evyt~~~i~~y~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (537) T protein:vir:78 171 WYSEIRYSTKQQSTETIWHADVWNEEAVCYYIQDDEGVSTTYKLDEAYNPNPAPHVLAIEESTDADFEDTDGYQVLGRSY 250 (537) T ss_pred EEeeeeccccccCcceEEEEEEEcCCcEEEEEecCCcccccccccccccccccceeeeccccccccccccccccccccCC Confidence 110000000 0 0011233333333321100 Q ss_pred --------cCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCce Q lcl|Aclame:pro 185 --------FHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTA 256 (454) Q Consensus 185 --------~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~ 256 (454) .+...|.|-+..+...|+..+.+.--..+.+.....|-.++.--.... ...++..++. . +++ T Consensus 251 g~iPvv~f~nn~~~~sd~e~v~~LiDayd~~~S~~an~~~~~~~~ilvi~g~~~~~---~~~~~~~l~~------~-~~i 320 (537) T protein:vir:78 251 SKFPFQLLYNNKDGMSDVKRVKSIIDDYDVMNCFLSNNLQDFSEAIYVVKGFSGDS---TDKLRQNIKA------K-KMI 320 (537) T ss_pred cceeEEEeccCccCCCchhhhHHHHHHHHHHHHhhhhHHHHhcCceeeeecCCCcc---chhHHHHHhh------c-Cce Confidence 012257777777777777777766666666666555555554322111 1122222221 1 233 Q ss_pred ecC-CC--ceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCH------------HHHHHHHHHHHH Q lcl|Aclame:pro 257 ILS-NG--AKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNV------------EALEQQYYSQCL 321 (454) Q Consensus 257 vl~-~g--~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~------------e~~~~~~~~~~i 321 (454) .++ +| ++|..... .+......++...+.|...-.+|.. .....+|-|.. ......++...+ T Consensus 321 ~v~~d~~~v~~l~~~~--~~~~~e~~ld~L~~~I~~~s~~~~~--~~~~~gn~SGvAlk~~~~~l~~ka~~ke~~f~~~l 396 (537) T protein:vir:78 321 GVNGDNAGMEIQTVSI--PYEARKAKMDIDVENIYRSGMGFNS--TAVGDGNVTNVVIKSRYTLLAMKARKMETSLRKVL 396 (537) T ss_pred eecCCCCceeEEEecC--CHHHHHHHHHHHHHHHHHhcCCCCC--ccccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHH Confidence 332 33 45544433 3333444556666666655444422 11111222211 111122233334 Q ss_pred HHHHHHHHHHHHHhhcCc-ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccc------- Q lcl|Aclame:pro 322 QTLIESIELLLDEALETG-ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALY------- 393 (454) Q Consensus 322 ~P~~~~ie~~l~~~l~~~-~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~------- 393 (454) +-+++.|...++.+-... ....+.+.|..-+..|..+.++.+.++++.|+++..-+.+++++-..++-.... T Consensus 397 ~~~~~~i~~~~~~~~~~~~d~~~i~i~f~~~~P~n~~e~a~~~~~l~~~giiS~eT~l~~~p~vdd~e~ek~~~ee~~~~ 476 (537) T protein:vir:78 397 RWCADMVVSDIALRGLGEYDSNDICFEIEPHVLANELDIATTRKTEAETEALKIGNIMTVAPRIGDDETLKLIAEELDLD 476 (537) T ss_pred HHHHHHHHHHHhhcCCcccccceeeEEeccCCCCCHHHHHHHHHHHHhcCcchHHHHHHhCCCCCCHHHHHHHHHHHHhh Confidence 434444444333221111 223567777777889999999999999999999987777776542211100000 Q ss_pred ------------cc-----cccccccccccccccccCCCccCcccCCCCCCcccCccccccccccc Q lcl|Aclame:pro 394 ------------LQ-----QQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHD 442 (454) Q Consensus 394 ------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 442 (454) .+ ....+..... .+.....+.......++|......|.+ .-.++ T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~----~~~~~ 537 (537) T protein:vir:78 477 YNELKDALAEQDAQSLDVSPDVQAMLDGL-PVNANQPPVDPNQPVADPNVVPPTDPN----AVPQT 537 (537) T ss_pred hhhhhhhhhhhcccccCcCcchhhhcCCC-CCCCCCCCCCccCCCCCCCCCCCCCCc----cCCCC Confidence 00 0000000000 000000000111111111111111111 11112 No 214 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=97.72 E-value=2.6e-05 Score=45.77 Aligned_cols=378 Identities=9% Similarity=-0.043 Sum_probs=159.8 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhcccccc-----CCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEe Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQ-----QGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQ 75 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~ 75 (454) +++-|-......... ..-+.....+--..+..... ......+..-+.++....+++..+..+-+-|..+.. T Consensus 30 ~i~~~i~~~~~~~~~----~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Iv~~~~~~l~g~p~~~~~ 105 (468) T protein:vir:96 30 MILRLITKHKENVED----ITVGERYYNHQPDVLFNAPKRNVKGEIDPFKPDWRMYTNYHQNLVDQKVAYAVANPVTYGT 105 (468) T ss_pred HHHHHHHHHHHHHHH----HHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHhhhccCCceecc Confidence 111111110000000 00000001100000000000 000001111223566677888888888888877632 Q ss_pred ccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCC--Cce Q lcl|Aclame:pro 76 TDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADD--GEV 153 (454) Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~--g~~ 153 (454) . +.. ....+..++. | +..+....+..+++.+|.+|+.+-.+.+|.+ .+..++|..+.+..+.. +.. T Consensus 106 ~--d~~----~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~~~~~~~~~ 173 (468) T protein:vir:96 106 E--DEK----SLKTIQEVLN--H---KWDDKLVDILTAASNKGVEWIQPYVDEQGEF-KTFRVPAEQAIPIWTNKERDEL 173 (468) T ss_pred C--ChH----HHHHHHHHHh--c---CHHHHHHHHHHHHhhcCeEEEEEEEcCCCce-EEEEEcccceEEEEcCCCCCce Confidence 1 111 1223333433 2 3445566778889999999988888888764 57788888888876542 222 Q ss_pred eeEEeccccccccceeEEehhh---------------------------------------eEEeecCCCcCcccccchh Q lcl|Aclame:pro 154 FYRITPDRNCGITEAVTVPARE---------------------------------------VIHDRFNCFFHPLIGLPPV 194 (454) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------vih~~~~~~~~~~~G~s~l 194 (454) .+.+..+..........+.... +++++ +...|.|-+ T Consensus 174 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvv~~~-----n~~~g~sd~ 248 (468) T protein:vir:96 174 KAFIRLYELDGGERVEYWTANDVTFYELKDGQLIPDYYQGEEHVQAHYYVGNKSMSWNRVPFIPFK-----NNPQEVSDL 248 (468) T ss_pred EEEEEEEEecCceEEEEEeCCeEEEEEEcCCceeecccccccccccceeeccccccCCcccEEEec-----CCCCCCCch Confidence 1111000000000000111111 22222 123578877 Q ss_pred hhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecC--CCceeeeccccch Q lcl|Aclame:pro 195 YAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILS--NGAKYNPTTFSPV 272 (454) Q Consensus 195 ~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~--~g~~~~~l~~~~~ 272 (454) ..+...++..+.+.--..+.+...+.|-.++.--.... .+.....+ ..++++.++ ++.++.-+..... T Consensus 249 e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~---~~~~~~~~-------~~~~~i~~~~d~~~~~~~l~~~~~ 318 (468) T protein:vir:96 249 FMYKTIIDAMDKRLSDTQNTFDEATELIYVLKGYEGED---LEEFMYNL-------KYYKAINVDGDGSGGVDTIQIDVP 318 (468) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCccc---cchhhhhh-------hcCceEEecCCCCCcceEEeecCC Confidence 77777777766665555556666666766654322111 11111111 112344432 3334444443334 Q ss_pred hhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhcCc Q lcl|Aclame:pro 273 DSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ-------------YYSQCLQTLIESIELLLDEALETG 339 (454) Q Consensus 273 d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~-------------~~~~~i~P~~~~ie~~l~~~l~~~ 339 (454) ...+....+...+.|...-++|....+.. .++- +.++.... .+...++-+++.|...+. ... T Consensus 319 ~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-~~n~-Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g---~~~ 393 (468) T protein:vir:96 319 VQSAKEYLDMLRDYVIEFGQGVDFQQDKF-GNSP-SGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYK---LSI 393 (468) T ss_pred hHHHHHHHHHHHHHHHHHhCccccccccc-ccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCc Confidence 45567778888999999999886432211 1111 22222111 111122222222221111 011 Q ss_pred ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccCc Q lcl|Aclame:pro 340 ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGK 419 (454) Q Consensus 340 ~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (454) ....+.+.++.-+..|..+.++ .+.+.|+++.-.+.++++.- ++.+.-+ ..+..... .... ......+ T Consensus 394 d~~~i~i~f~~~~p~d~~e~a~---~~~~~g~iS~et~i~~l~~v--~D~~~E~-----~ri~~E~~-~~~~-~~~~~~~ 461 (468) T protein:vir:96 394 KVQDVEITFNFNVMVNELEQSQ---IGVNSQYLSKETVVTNHPWV--DDPVAEM-----ERIDQEEL-ALPS-IEEGLNG 461 (468) T ss_pred ccceeeEEecCCCCcCHHHHHH---HHHhcCCCchHHHHHhCCCC--CCHHHHH-----HHHHHHHH-HHHH-HhhccCC Confidence 1223455556555666655555 45567999988788876542 2111110 00100000 0000 0000000 Q ss_pred ccCCCCCCc Q lcl|Aclame:pro 420 TASVPQAVA 428 (454) Q Consensus 420 ~~~~~~~~~ 428 (454) ..+..|+ T Consensus 462 --~~~~~~~ 468 (468) T protein:vir:96 462 --KENNEPT 468 (468) T ss_pred --CCCCCCC Confidence 0011111 No 215 >protein:vir:4073 Length: 279 # NCBI annotation: minor structural protein # Family: family:all:11744 # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043552;genbank:gi:9628686;genbank:GeneID:1261159 Probab=97.41 E-value=2.5e-06 Score=51.34 Aligned_cols=271 Identities=10% Similarity=0.009 Sum_probs=130.0 Q ss_pred HHHHHHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCcee Q lcl|Aclame:pro 54 AVFACISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIK 133 (454) Q Consensus 54 ~v~~~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~ 133 (454) .-.-.++..|++++-..|.+.. ... ...-..++-+.---.|...+-..-++.++.+ .+.|.-.-.++..+-.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-- 73 (279) T protein:vir:40 1 MSLFNLSRRAEDVSFSTFTVQD---PTT-DLLLGKLLGLVSYFDNVDYSEASKLEDLFYW-ALQGKEVYRVWYGGFKY-- 73 (279) T ss_pred CcccccchhhcccceeeeeecC---cch-hHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceeehhhhhhHHH-- Confidence 0001122233444333333311 000 0000111111122344444444444444443 23333321111110000 Q ss_pred EEEEecCcceEEEECCCCceeeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHH Q lcl|Aclame:pro 134 ELRILDWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTS 213 (454) Q Consensus 134 ~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~ 213 (454) -+.+| ..|...... ..+..+.+.+|..|+..+- ++.+|.-+= ....-+++. ....-. T Consensus 74 -----~~~~~--~~d~fn~~v-------r~~~~~~vtVP~~Dv~Iie-----NPlv~v~~e-e~~kM~~la---~nai~~ 130 (279) T protein:vir:40 74 -----YAQRV--NADQFNIVV-------REPNRREVTIRTNDYEMLL-----NPFYGANPQ-RFGVMFGMA---SNGIGR 130 (279) T ss_pred -----HHhhc--Ccchhhhhe-------ecCCcceeEeecchhhhhh-----cchheeccc-hhhHHHHHH---Hhhhhh Confidence 00000 001100000 0111234556666665443 223444322 222222222 222233 Q ss_pred HHhccCCcceeEecCccC-CHHHHHHHHHHHHHHhcCcc-cCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 214 FFRNGGRPSGVIEIPGSI-TEENAKKLKSNWDSGYTGEN-AGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVF 291 (454) Q Consensus 214 ~~~ng~~p~~~l~~~~~~-s~e~~~~~~~~~~~~~~g~n-~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~f 291 (454) -+.+.+...++|+.+.+. .++..++.+.+++++..+.+ -+++.+++.|.+++++.-+-.-. ..+-.++.+.+.+..+ T Consensus 131 KLD~~~qIk~fIKTd~d~glee~kekaR~rIk~mlalAk~~nGityid~~ddItQL~kDYSts-lk~die~lkS~l~Sq~ 209 (279) T protein:vir:40 131 RLDSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGS-LQNDANLAIEIALSEY 209 (279) T ss_pred hhcccceeeeEEecCcchhHHHHHHHHHHHHHHHHHHHHhcCCeeeecCCceeEeeccccccc-cHHHHHHHHHHHHhhc Confidence 347777888888888664 46678888999999987654 57899999999999998765543 3455678888999999 Q ss_pred ccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHH------HHhhcCcccceeeecchhhhhcCHHHHHHHHHH Q lcl|Aclame:pro 292 RVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLL------DEALETGENESTEFDVTTLLRMDSERRMKTLGD 365 (454) Q Consensus 292 gvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l------~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~ 365 (454) |||..+|-+..+ |.+..+|+..+|.|++++.+..| +.+.++.- T Consensus 210 GinekIL~GsAt------E~q~iAyy~rtVePILkQyek~liY~~E~fv~y~ttt------------------------- 258 (279) T protein:vir:40 210 GMPRELLYGQSN------EVTIIAFAIQKVLPLLKQHDKNIIFNQENFVAYISTT------------------------- 258 (279) T ss_pred CCchhhccccCc------hhhhhhHHHhhHHHHHHHhcccccchhhhhhhhheec------------------------- Confidence 999999854322 88999999999999999976632 22222210 Q ss_pred HHhCCCcCHHHHHHHhcCCCCCCc Q lcl|Aclame:pro 366 AVKNTLLTPNEARKRENLPPLAGG 389 (454) Q Consensus 366 ~~~~g~~T~NE~R~~~g~~p~~~~ 389 (454) ...|.+. -.-...+-+|+... T Consensus 259 -a~gg~~~--s~~~~~~~~~~~~~ 279 (279) T protein:vir:40 259 -AKGGAIE--SKSSKRDSEPVGND 279 (279) T ss_pred -ccCcccc--cccccccCCCCCCC Confidence 0111110 00011111222111 No 216 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=97.36 E-value=8.5e-05 Score=42.90 Aligned_cols=400 Identities=8% Similarity=-0.072 Sum_probs=161.5 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +-+++.+....+... ..-...++.+--........... ..+..-+..+....+|+..++.+-.-|+.+...++ T Consensus 20 ~~~~i~~~~~~~~~r----~~~~~~yy~g~~~i~~~~~~~~~-~~~~~ki~~n~~~~iv~~~~~~l~g~~~~~~~~d~-- 92 (489) T protein:vir:99 20 LKNYISRFKAEQLER----LKELKRYYLGDNNIKYRPAKTDK-YAADNRIASDFAKYITVFEQGYMLGVPVEYKNENK-- 92 (489) T ss_pred HHHHHHHHHHHHHHH----HHHHHHHhcccCccccccccccc-cCCcceeecchHHHHHHHHhhhhccCCceeecCCh-- Confidence 222222111100000 00000111110000000000000 00001123566778888888888877876642111 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEee----CCCCceeEEEEecCcceEEEECCCC--cee Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIR----NARGQIKELRILDWNRVEPLVADDG--EVF 154 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r----~~~G~~~~l~~l~~~~~~~~~~~~g--~~~ 154 (454) . ....+..++.. | ....+...+..+++.+|.+|..+.. +.+| ...+..++|..+.+..+... ... T Consensus 93 ~----~~~~l~~~~~~-n---~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~-~~~i~~~~p~~~~~v~dd~~~~~~~ 163 (489) T protein:vir:99 93 D----LQAAIDLMSVR-N---NEDYHNVKIKTDLSIYGRAYELLTVEKIDDKKT-EVKLYQLPAEQTFVIYDDTYQRNSL 163 (489) T ss_pred h----HHHHHHHHHhh-c---ChhHHHHHHHHHHhhCCeEEEEEeeccCcCCCc-ceEEEEEcccceEEEEcCCCCCceE Confidence 1 11222233332 2 3445677888889999999976643 2333 34677888888888776432 111 Q ss_pred eE---Eecc-cc-ccccceeEEehhh----------------------------eEEeecCCCcCcccccchhhhhHhHH Q lcl|Aclame:pro 155 YR---ITPD-RN-CGITEAVTVPARE----------------------------VIHDRFNCFFHPLIGLPPVYAAGLAA 201 (454) Q Consensus 155 ~~---~~~~-~~-~~~~~~~~~~~~~----------------------------vih~~~~~~~~~~~G~s~l~~~~~~i 201 (454) +. |... .. ........+.++. |+|++. ...|.|.+..+...+ T Consensus 164 ~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~~~s~~~~v~~li 238 (489) T protein:vir:99 164 MAVHFYDIDYGSGKRKQIIKAYTSDTIYTYEDYNLETKGMRLKDYEGHFFKGVPVNEYAN-----NEERTGAYESVLDNI 238 (489) T ss_pred EEEEEEEEecCCCceEEEEEEEeCCcEEEEEecCCCcccceecccccccCCceeEEEeec-----CCCCCCchhhhHHHH Confidence 11 1000 00 0000001111222 334332 224667666666666 Q ss_pred HHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHh-------cCcccCCceecCCC-------ceeeec Q lcl|Aclame:pro 202 TQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGY-------TGENAGKTAILSNG-------AKYNPT 267 (454) Q Consensus 202 ~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~-------~g~n~g~~~vl~~g-------~~~~~l 267 (454) +..+.+.--..+.....+.|-.+++--. ...+........+.-.. .+...++++.++.+ .+..-+ T Consensus 239 Da~d~~~s~~~~~~~~~~~~~l~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 317 (489) T protein:vir:99 239 DAYDLSQSELANFQQDSVNALLVIAGNA-YTGADENDYLDDGRLNPNGRLAISIGFKKAQVLILDDNPNPNGVKPQAYFL 317 (489) T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCC-cccccchhhhhhcccccccccccccccccceeeeeccccCccccccceeee Confidence 5555544444433444444444443211 12111112222111110 11122334443332 233334 Q ss_pred cccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHH-------------HHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 268 TFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALE-------------QQYYSQCLQTLIESIELLLDE 334 (454) Q Consensus 268 ~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~-------------~~~~~~~i~P~~~~ie~~l~~ 334 (454) ........+....+...+.|+..-++|..-.... .+|- +..+.. ...+...+.-+++.|...+.. T Consensus 318 ~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-~~n~-Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~ 395 (489) T protein:vir:99 318 KKEYDTAGSEAYKNRLVADILRFTFTPDTQDMKF-SGVQ-SGESMKYKLMASDNYREKQERLFKKGLMRRLRLAANIWAI 395 (489) T ss_pred eecCChHHHHHHHHHHHHHHHHHhCCcccccccc-cccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 4333444456667888899999999886432111 1121 112211 112233333333333333321 Q ss_pred hhcCc----ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCcccccccccccccccccccccc Q lcl|Aclame:pro 335 ALETG----ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAR 410 (454) Q Consensus 335 ~l~~~----~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~ 410 (454) .-... ....+.+.|..-+..|..+.++.+.++. |+++...+.++++.-..++...-+ ..+........ T Consensus 396 ~~~~~~~~~~~~~i~v~f~~~~p~d~~~~~~~~~kl~--giis~et~~~~l~~v~~~d~~~E~-----~ri~~E~~~~~- 467 (489) T protein:vir:99 396 KGNEATTYSLVNDTSIVFTPNLPQNDNEIVTAAQNLY--GIVSDQTIFEILNTVTGVDAEAEL-----KRLKEEADKKQ- 467 (489) T ss_pred cCCccccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHHHHhcCCCCchhHHHHH-----HHHHHHHHHHh- Confidence 11100 1123566777777888999999988874 789988888776431111111100 00100000000 Q ss_pred ccCCCccCcccCCCCCCcccCcccc Q lcl|Aclame:pro 411 EDPFASSGKTASVPQAVAASDGNKA 435 (454) Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~d~~~~ 435 (454) ...+..... ....+++...++. T Consensus 468 ~~~~~~~~~---~~~~~~~~~~~~p 489 (489) T protein:vir:99 468 SLPEPRLVG---DASGQEEPTAEKP 489 (489) T ss_pred ccccccccC---CCCCCcCCCCCCC Confidence 000000000 0000111111111 No 217 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=97.02 E-value=0.00021 Score=40.77 Aligned_cols=383 Identities=10% Similarity=0.034 Sum_probs=167.4 Q ss_pred Ccchhhhhcccc----ccccccCcccchhhhhhhhhh--ccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEE Q lcl|Aclame:pro 1 MWNLLRRTRKNQ----KSGRDVREAGWTSLFQAVAEP--FAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLM 74 (454) Q Consensus 1 m~n~f~r~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~ 74 (454) +.+.+....... ...... ..+-..+....... ..+.......-.+..-+.+......|+..++-+.+-|+.+. T Consensus 9 ~i~~~~~~~~~~~~~~~~~~~Y-y~g~~~I~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~G~p~~~~ 87 (470) T protein:vir:10 9 LIQNTSTSRNDLINNYKQAVNY-YENKTDITTRNNGKAKLNKEGKKDPLRSADNRIPSNFYQLLVDQEAGYVASVFPDID 87 (470) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccchhccccchhcccccccccccccCCcccccchHHHHHHhhhhheeccceeee Confidence 111111000000 000000 00000000000000 00000000000001112345566778888888888887764 Q ss_pred eccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEECCC--Cc Q lcl|Aclame:pro 75 QTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADD--GE 152 (454) Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~--g~ 152 (454) ..++ + ....+..++.+ +..+-...+..+++.+|.+|.++..+.+|.+ .+..++|..+-+..+.. +. T Consensus 88 ~~d~--~----~~~~l~~~~~~-----~~~~~~~~l~~~~~~~G~a~~~~y~d~~~~~-~~~~~~p~~~~~v~d~~~~~~ 155 (470) T protein:vir:10 88 VGKD--A----DNKKIIDVLGD-----DRALTLNGLLVDSSNAGRAWLHYWIDEDGNF-RYGIIQPDQITPIYATTLDNK 155 (470) T ss_pred cCch--H----HHHHHHHHHhh-----hHHHHHHHHHHHHhhcCeeEEEEEecCCCce-EEEEEcccceEEEEcCCCCCc Confidence 3221 1 11123333321 2334445677888999999999988888865 56778999888887653 22 Q ss_pred eeeEE---e-ccccccc--cceeEEehhh---------------------------------------------eEEeec Q lcl|Aclame:pro 153 VFYRI---T-PDRNCGI--TEAVTVPARE---------------------------------------------VIHDRF 181 (454) Q Consensus 153 ~~~~~---~-~~~~~~~--~~~~~~~~~~---------------------------------------------vih~~~ 181 (454) ..+.+ . ....... .....+.... +++++. T Consensus 156 ~~a~ir~y~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n 235 (470) T protein:vir:10 156 LLGILRSYKQLDPDSGKYFTVHEYWTDKEAQFFRTNATDSTVIEPYNIITSYDLSAGYETGQSNTLKHNFGRVPFIEFSK 235 (470) T ss_pred eEEEEEEEEeeecCCceEEEEEEEEcCCcEEEEEeecCcceeccccccccccccccccccccccccccCCCeeeEEEeec Confidence 22111 1 0000000 0001112222 233332 Q ss_pred CCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceec--- Q lcl|Aclame:pro 182 NCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAIL--- 258 (454) Q Consensus 182 ~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl--- 258 (454) ...|.|-+..+...++..+.+.--..+.+...+.|-.++.--...+ ..+....+.. .+++.+ T Consensus 236 -----n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lvl~g~~~~~---~~~~~~~~~~-------~~~i~~~~~ 300 (470) T protein:vir:10 236 -----NKYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVILVLTNYGGAD---LHQFMNDLRK-------YKSIKINNT 300 (470) T ss_pred -----CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCCccc---cchhhhhhhh-------cCeEeccCC Confidence 2357787877777777766666666666666666766664422211 1122222211 122222 Q ss_pred ----CCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHH-------------HHHHHHHH Q lcl|Aclame:pro 259 ----SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALE-------------QQYYSQCL 321 (454) Q Consensus 259 ----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~-------------~~~~~~~i 321 (454) ++++++..... ....+....+...+.|+..-++|..-... .++- +..+.. ...+..++ T Consensus 301 ~~~~~~~~~~lt~~~--~~~~~~~~~~~L~~~I~~~s~~p~~~~~~--~gn~-Sg~Alk~~~~~l~~k~~~~~~~~~~~l 375 (470) T protein:vir:10 301 GNGDNSGVDKLQIDI--PVEARDDALKITRKNIFLFGQGIDPANFE--SSNA-SGVAIKMLYSHLELKAAKTQTYFEHAI 375 (470) T ss_pred CCCcCceeEEEeecC--ChHHHHHHHHHHHHHHHHHhCCCCCCccc--cccc-hHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 12344444443 33445667788888999888888642221 1221 111111 11122233 Q ss_pred HHHHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccc Q lcl|Aclame:pro 322 QTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSL 401 (454) Q Consensus 322 ~P~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~ 401 (454) +-+++.|...++.. ......+.+.|..-+..|..+.++.+.++ +|+++..-+++++++- ++.+.-+ ..+ T Consensus 376 ~~~~~~i~~~l~~~--~~d~~~i~i~f~~~~p~d~~e~~~~~~~~--~g~iS~et~l~~~p~v--~D~~~E~-----eri 444 (470) T protein:vir:10 376 NELVRAIMRYLNFS--DADKRHISQHWTRTKVEDSLTKAQIVSTV--ANYSSKEAVAKANPIV--DDWQQEL-----KDL 444 (470) T ss_pred HHHHHHHHHHhccc--CcccceeeEEeccCCCCCHHHHHHHHHHH--hccCcHHHHHHhCCCC--CCHHHHH-----HHH Confidence 33333333322211 11224567778888889999999998887 5789887788777642 2211111 011 Q ss_pred cccccccccccCCCccCcccCCCCCCcccCccc Q lcl|Aclame:pro 402 EALSRRDAREDPFASSGKTASVPQAVAASDGNK 434 (454) Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 434 (454) ........+. .+........ ..|.++ T Consensus 445 ~~E~~e~~~~------~~~~~~~~~~-~~dde~ 470 (470) T protein:vir:10 445 AKDKEENDPY------SNQADELNGK-GVNDEQ 470 (470) T ss_pred HHHHHHHHHh------hccccccCCC-CCCCCC Confidence 1000000000 0000000011 111111 No 218 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=96.96 E-value=0.00023 Score=40.49 Aligned_cols=386 Identities=8% Similarity=-0.073 Sum_probs=163.9 Q ss_pred Ccchhhhhcccc-cc---ccccCcccchhhhhh--hhh----hccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQ-KS---GRDVREAGWTSLFQA--VAE----PFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMR 70 (454) Q Consensus 1 m~n~f~r~~~~~-~~---~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~ 70 (454) +.+-|-...... .+ ....- .+..++... ... .............+..-+.++....+++..++.+.+-| T Consensus 9 ~i~~~~~~~~~~~~~~~~~~~Yy-~g~hdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p 87 (471) T protein:vir:10 9 IISSQMVKHGKFVSQAAEAEKYY-RNENDIKRKRKPADKKGAENEAKAEDNAFRNADNRISHNWHQLLLDQKKAYALTYP 87 (471) T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccccccccccchhhhhcccccccccccccccccceeccchhHHHHHhhhhhhcccC Confidence 222221100000 00 00000 000000000 000 00000000000001112335567778888888888888 Q ss_pred eEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC-CCceeEEEEecCcceEEEECC Q lcl|Aclame:pro 71 LRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA-RGQIKELRILDWNRVEPLVAD 149 (454) Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~-~G~~~~l~~l~~~~~~~~~~~ 149 (454) ..+... +.+ ....+..++. | ........+...++.+|.+|.++.++. +|. ..+..++|..+-+..+. T Consensus 88 ~~~~~~--~~~----~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~g~-~~~~~~~p~~~~~i~d~ 155 (471) T protein:vir:10 88 PTFDVD--DKK----VNDMIVDVLG--D---DYERISKQLCVNAGNAGIAWLHVWKDASDNS-FRYACVDSKEVIPIYSK 155 (471) T ss_pred ceeccC--ChH----HHHHHHHHHh--c---CHHHHHHHHHHHHhhCCeEEEEEEeeCCCCe-eEEEEEcccceEEEEcC Confidence 776321 111 1122333322 2 234456667888999999999987774 465 46778899998888765 Q ss_pred CC--ceeeE--Eeccc--c--ccccceeEEehhheEEeecCC-------------------------------Cc----- Q lcl|Aclame:pro 150 DG--EVFYR--ITPDR--N--CGITEAVTVPAREVIHDRFNC-------------------------------FF----- 185 (454) Q Consensus 150 ~g--~~~~~--~~~~~--~--~~~~~~~~~~~~~vih~~~~~-------------------------------~~----- 185 (454) .. ...+. ++... . ........+....+.|+.... +. T Consensus 156 ~~~~~~~~~ir~~~~~~~~~~~~~~~~~vy~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPv 235 (471) T protein:vir:10 156 SLDKKSIGVLRVYSSIDETDGKNYTVYEYWNDKECSFYRHEKEKPLEELETFQAISLIDTMNGDRSSDNSFKHDFGLVPF 235 (471) T ss_pred CCCCceEEEEEEEEeeccCCCceeEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCCceeE Confidence 43 12111 11100 0 000001112233333332110 00 Q ss_pred ----CcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecC-- Q lcl|Aclame:pro 186 ----HPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILS-- 259 (454) Q Consensus 186 ----~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~-- 259 (454) +...|.|-+..+...++..+.+.--..+.+...+.|-.++.-..... .+.....+.. ++++.++ T Consensus 236 v~~~n~~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~---~~~~~~~~~~-------~~~i~~~~~ 305 (471) T protein:vir:10 236 IPFKNNEIETNDLKPIKDLVDVYDKVFSGFVNDTDDVQEVIFVLTNYGGQD---KQEFLEDLKR-------YKMIKMDND 305 (471) T ss_pred EEeccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccc---cchhHHHhhc-------CCeEEecCC Confidence 12346777777666666666555555555555555655554322111 1111111111 1222221 Q ss_pred ---CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH-------------HHHHHHHH Q lcl|Aclame:pro 260 ---NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ-------------YYSQCLQT 323 (454) Q Consensus 260 ---~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~-------------~~~~~i~P 323 (454) .+.+++-+........+....+...+.|+..-++|..-.... +|-| ..+.... .+...+.- T Consensus 306 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~tp~~~~~~~--gn~S-g~Alk~~~~~l~~k~~~~~~~~~~~l~~ 382 (471) T protein:vir:10 306 GMGDQSGVTTIAIDIPTEARNLILERTKKQIFISGQGVNPETDKL--GNSS-GVALKFLYSLLELKAGNMETQFRSGYAT 382 (471) T ss_pred CCccCccceEEeecCChHHHHHHHHHHHHHHHHHhCCcCCCcccc--cCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 222333333333344567778888899999999886533221 1211 1111111 11222222 Q ss_pred HHHHHHHHHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccc Q lcl|Aclame:pro 324 LIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEA 403 (454) Q Consensus 324 ~~~~ie~~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~ 403 (454) +++.|...+. ......+.+.|...+..|..+.++.+.++ .|+++..-+.++++.- ++.+.- +.. T Consensus 383 ~~~li~~~~~----~~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~~p~v--~D~~~E--------~er 446 (471) T protein:vir:10 383 LVKMILKHLG----LSDKLKIKQTWTRNSINNDTEMAQVVSTL--ATITSRENVAKSNPIV--EDWQDE--------LRL 446 (471) T ss_pred HHHHHHHHhc----cCCCceeEEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCC--CCHHHH--------HHH Confidence 2222222211 11234567777888889999999999887 5789887788776542 221110 111 Q ss_pred cccccccccCCCccCcccCCCCCCcccC Q lcl|Aclame:pro 404 LSRRDAREDPFASSGKTASVPQAVAASD 431 (454) Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d 431 (454) ..+........... . ....++++.+ T Consensus 447 i~~E~~~~~~~~~~-~--~~~~~~~e~~ 471 (471) T protein:vir:10 447 QKAEQEGRSEKLYD-M--EEVEHESEVE 471 (471) T ss_pred HHHHHHHHHhcccc-c--CCCCCccccC Confidence 11100000000000 0 0000000000 No 219 >protein:vir:104892 Length: 558 # NCBI annotation: T4-like capsid assembly protein # Family: family:all:1036 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214363;genbank:gi:61806003;genbank:GeneID:3294412 Probab=96.29 E-value=0.00078 Score=37.61 Aligned_cols=438 Identities=13% Similarity=0.084 Sum_probs=173.0 Q ss_pred Ccchhhhhcccc----ccccccCcccchhhh-hhhhhhcccccc--CCccc-------cHHHHHhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MWNLLRRTRKNQ----KSGRDVREAGWTSLF-QAVAEPFAGAWQ--QGVKA-------DPEAVLSFHAVFACISLISQDI 66 (454) Q Consensus 1 m~n~f~r~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~v~~~i~~ia~~v 66 (454) |.-+|+.+.... ....++.+....+.. ...+..+.+.+. .+..- .-+..+.+|.|..||+-|.+.+ T Consensus 1 m~~lfgf~~~~~~~~~~~~~s~~~p~~ddg~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVnea 80 (558) T protein:vir:10 1 MAKLFGFSIEETQKKSTSIISPVPKNNEDGVDNFISSGFYGQYVDIEGAYRSEYDLIRRYREMALHPEADGAIEDVVNEA 80 (558) T ss_pred CcchhcchhhhhhhhccCCccccCCCccccccceeccceeeeeecccchhhhHHHHHHHHHHHhhccchhhHHHHhhcce Confidence 888886554221 111111111111111 100111111111 11111 1244567899999999998777 Q ss_pred ccc-----ceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC---CceeEEEEe Q lcl|Aclame:pro 67 AKM-----RLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR---GQIKELRIL 138 (454) Q Consensus 67 a~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~---G~~~~l~~l 138 (454) .-+ |..+.-.+-+. ........ ..-+..--..+++..=-..++..|.+.|..|..++-+.+ .-..+|..| T Consensus 81 iv~d~~~~pV~i~Ld~~~~-s~~iK~kI-~eEF~~Il~ll~F~~~~~e~fR~WYVDgRiyfHKiid~k~pk~GI~ELr~l 158 (558) T protein:vir:10 81 IVSDLYDSPVEVELSNLNA-SNTLKKKI-REEFRYIKEMMDFDKKSHEIFRNWYVDGRVFYLKVIDTKNPQEGIQDLRYI 158 (558) T ss_pred eEecCCCceEEEEecccCc-chHHHHHH-HHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEEeCCCccccceeeeee Confidence 533 22221111110 00111111 111111111122223334556668889999988865432 348899999 Q ss_pred cCcceEEEECC----------------CCc-------eeeEEecccc--------ccccceeEEehhheEEeecCC--Cc Q lcl|Aclame:pro 139 DWNRVEPLVAD----------------DGE-------VFYRITPDRN--------CGITEAVTVPAREVIHDRFNC--FF 185 (454) Q Consensus 139 ~~~~~~~~~~~----------------~g~-------~~~~~~~~~~--------~~~~~~~~~~~~~vih~~~~~--~~ 185 (454) +|-.++.++.- .+. .+|.|..... ...+.++.++.+ .|++-+.- .. T Consensus 159 DPr~i~~Vr~i~~~~~~~~~~~~~~~~~~~~~~~~~~eyy~Y~~~~~~~~~~~~~~~~~~~vkI~~d-AI~y~hSGL~d~ 237 (558) T protein:vir:10 159 DPLKIKFIRQEKRKPGNQDPAIRVRSEQDVVPNPEFEEFYIYTPKVQHPTGMVGQMGGKNSIKIAKD-SITMCTSGLVDR 237 (558) T ss_pred CcccceeeeeeccccccccceeeeecccceeeccceeEeeeecCCcccccccceeecCCCceeechh-heeeecccceec Confidence 99998765432 111 1121211111 012233445444 34443321 11 Q ss_pred CcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccC-CHHHHHHH----HHHHHHHh-----cC--cccC Q lcl|Aclame:pro 186 HPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI-TEENAKKL----KSNWDSGY-----TG--ENAG 253 (454) Q Consensus 186 ~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~-s~e~~~~~----~~~~~~~~-----~g--~n~g 253 (454) ++-.-+|-|..++..+....-++...-=+--..+.-+-|+.++-+. -...+++. ..++++.+ .| .+.. T Consensus 238 ~~~~i~syLhkAIKp~NQLkmlEDAlVIYRitRAPERRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddr 317 (558) T protein:vir:10 238 NKNRVLSYLHKAIKALNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKVKAEQYLKEVMSRYRNKLVYDANTGEVRDDR 317 (558) T ss_pred CCCeeeecchHhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccc Confidence 2223456666666666655555555444434444445555555332 22233333 33443322 12 1111 Q ss_pred Cce-e-----cC-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCH---HHHHHHHHHH Q lcl|Aclame:pro 254 KTA-I-----LS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNV---EALEQQYYSQ 319 (454) Q Consensus 254 ~~~-v-----l~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~---e~~~~~~~~~ 319 (454) +.+ . |+ .|.+++.|.-.. .+.-++-..+..+.+.++++||.+-|+....-+.... .-....|. . T Consensus 318 k~msMlEDyWLpRReGgrgTEItTLpGgq-nLgem~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~-K 395 (558) T protein:vir:10 318 KFMSMMEDFWLPRREGGRGTEITTLPGGQ-NLGELSDVDYFQKKLYRALGVPESRIAAEGGFNLGRSSEILRDELKFA-K 395 (558) T ss_pred hhhhhHhhhcccccCCCCccceeeccccC-CcchHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHH-H Confidence 111 2 22 356777765432 2223445678888999999999999976544343222 22222333 3 Q ss_pred HHHHHHHHHHHHHHHhhcC---------ccc-----ceeeec--chhhh----h-cCHHHHHHHHHHHHh-CC-CcCHHH Q lcl|Aclame:pro 320 CLQTLIESIELLLDEALET---------GEN-----ESTEFD--VTTLL----R-MDSERRMKTLGDAVK-NT-LLTPNE 376 (454) Q Consensus 320 ~i~P~~~~ie~~l~~~l~~---------~~~-----~~~~f~--~~~l~----~-~d~~~~~~~~~~~~~-~g-~~T~NE 376 (454) .|.-+..++...|...|-+ ... ..++|+ .|.-. . .-...+++.+..+-. .| .++.+= T Consensus 396 FI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dy 475 (558) T protein:vir:10 396 FVGRLRKRFAAMFNDMLKTQLVLKNIVTPEDWKTMEDHIQYDFLYDNQFAELKESELMEGRLGMLATIEPYIGKYYSTEY 475 (558) T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHH Confidence 3555666666555544421 111 133333 33211 0 111223333333321 12 223333 Q ss_pred HHH-HhcCCCC-----------CCcccccccc-ccccccccccccccccCCCccCcccCCCCCCcccCcccccccccccH Q lcl|Aclame:pro 377 ARK-RENLPPL-----------AGGDALYLQQ-QNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDA 443 (454) Q Consensus 377 ~R~-~~g~~p~-----------~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 443 (454) +|+ .|.+.-. +-.+.++..+ ...++.. ...++.+.+. ....+.+..+++ .+..+.+ T Consensus 476 i~k~ILr~tDeeI~~~~kqI~~E~k~~~~~~p~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~ 544 (558) T protein:vir:10 476 VRKRVLRQTDMEIEEIDTQIEDEIQKGIIPDPSQIDPITG---EPLPQEGDPA-MEGMGEQPVDPD-------LEAQAQA 544 (558) T ss_pred HHHHHhccCHHHHHHHHHHHHHHHhCCCCCCccccChhhc---cccCccCCch-hccCCCCCcccc-------cccchhh Confidence 332 2333210 0011111110 0000100 0000000000 001111111111 1112223 Q ss_pred HHHHHHHHhcC Q lcl|Aclame:pro 444 VKAMFRGILKK 454 (454) Q Consensus 444 ~~a~~~~~~~~ 454 (454) +.|+.-+-+++ T Consensus 545 ~~~~~~~~~~~ 555 (558) T protein:vir:10 545 VDAQYSKDTKK 555 (558) T ss_pred hhhhhhhhhhh Confidence 33333333333 No 220 >protein:vir:105154 Length: 525 # NCBI annotation: conserved phage-related protein # Family: family:all:6660 # MgeID: mge:1466 # MgeName: C-St # Cross-refs: genbank:acc:YP_398597;genbank:gi:80159853;genbank:GeneID:3772992 Probab=95.83 E-value=0.0014 Score=36.25 Aligned_cols=410 Identities=10% Similarity=0.093 Sum_probs=176.5 Q ss_pred CcchhhhhccccccccccCcccch-hhhhhhhhhccccccCCccccHHHHHhhH-------------------HHHHHHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWT-SLFQAVAEPFAGAWQQGVKADPEAVLSFH-------------------AVFACIS 60 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~v~~~i~ 60 (454) |.|=+-|--.+-..-++....++. .++++. --..-..-+-+.+..|| .|+...+ T Consensus 27 ~~n~~~~~y~ty~~~~~~f~~gfv~~~~~ng------~i~~v~~~~l~~~f~npd~~~~~i~~l~~y~yi~~~~v~ql~~ 100 (525) T protein:vir:10 27 HINELERQYNTYDDVVDAFIDGFVMDLCNNG------KIKTVNLDTLQLWFNNPDKYINNIVNLLTYYYIIDGNVFQLYD 100 (525) T ss_pred HHhhhhhhcchhhhHHHHHHHHHHHHhhcCC------ceeeeeHHHHHhhhcChHHHHHHHHHHHHHhhhhcchHHHHHH Confidence 666654432221110110011110 011000 00000000111222222 2333333 Q ss_pred HHHHhhcccceEEEeccccccceehhhhH--HHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCcee----- Q lcl|Aclame:pro 61 LISQDIAKMRLRLMQTDAQGIRRETRRGD--IARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIK----- 133 (454) Q Consensus 61 ~ia~~va~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~----- 133 (454) +| .++-.+.+++..-+.+ .....|. +.+.++. -.--.++-+.++.++...|...- ++-...-.|. T Consensus 101 li-~~lp~l~y~i~~~~~~---k~~~~~~s~~n~~l~k---~i~hk~ltrdll~q~a~~gtlig-~wlg~~~~py~~vf~ 172 (525) T protein:vir:10 101 LI-FSLPPLDYQIKVLKRD---KDYKEDLSTINLYLEK---KIQHKQLTRDLLVQLAHSGTLIG-TWLGSKREPYFNVFN 172 (525) T ss_pred HH-HhcCCcceeehhhhhc---cchhhHHHHHHHHHHH---hHHHHHHHHHHHHHhhccCceeE-eeecCCCCcchhhhh Confidence 33 2233333444322221 1212221 2222221 01111222222333333333211 1101111111 Q ss_pred EEEEecC------cceEEEEC--------CCCc----------------eeeEEeccccccccceeEEehhheEEeecCC Q lcl|Aclame:pro 134 ELRILDW------NRVEPLVA--------DDGE----------------VFYRITPDRNCGITEAVTVPAREVIHDRFNC 183 (454) Q Consensus 134 ~l~~l~~------~~~~~~~~--------~~g~----------------~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~ 183 (454) ++.++-| ..|-|+.. .... .+-.|.. .+...-....+|.+.++|.|.+. T Consensus 173 ~~kyvfp~~r~~g~~v~vid~~~f~~~~~~~r~~~~~~lsp~i~~~~y~~~~~~~~-~~~~~~r~i~LP~e~t~~lr~~t 251 (525) T protein:vir:10 173 NLKYVFPYGRAKGKMVAVIDLQWFDEMSELERKLTFENLSPLITENKYKKWKEYNG-ENEDALRYIMLPISKTLVARIHT 251 (525) T ss_pred hhhhhccccccCCceEEEEehHHhhhhhHHHHHHHHHhhchhhhhhhhhHHhhccc-ccchhheeeecccceeEEeeecc Confidence 1111111 11111100 0000 0000000 01111123568899999999874 Q ss_pred C-cCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccC------CHHHHHHHHHHHHHHhcC--cccCC Q lcl|Aclame:pro 184 F-FHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI------TEENAKKLKSNWDSGYTG--ENAGK 254 (454) Q Consensus 184 ~-~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~------s~e~~~~~~~~~~~~~~g--~n~g~ 254 (454) + .++.-|.|-.......|.......+...+....=..|-.++++.+.. -+...+++.+..+.+... +...+ T Consensus 252 l~rnqrlG~s~vtp~l~dI~hk~klrd~EqsIA~kii~a~avLk~gg~~gn~mk~p~~~kqkil~gVk~aleK~~kdK~G 331 (525) T protein:vir:10 252 LSRNQRLGIPYGTQTLFDIQHKQKLRDLEQSIADKIIKAMAVLKFRGKDDNDSKVKESAKRKVLAGVKRALEKGVKDKNG 331 (525) T ss_pred cccCcccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhheeeeeccccCccccCchHHHHHHHHHHHHHHhcccccccC Confidence 4 45555899888888888888888888888888877888888886542 233455666667766642 22224 Q ss_pred ceec--CC--Cceeeeccc--cchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 255 TAIL--SN--GAKYNPTTF--SPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESI 328 (454) Q Consensus 255 ~~vl--~~--g~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~i 328 (454) +.++ |. .++|-.+.. ..-|-+ -.+....+|-.|+|++.+++.+. .+||+++.-....||+. |.-+++.| T Consensus 332 i~vi~~Pdfa~~efp~ik~~~~glDg~---K~d~I~~DI~~A~GlS~sL~nGd-ggNyAtaslnld~fykk-igVm~e~I 406 (525) T protein:vir:10 332 IACIAMPDFATFEFPEIKNGDKTLDPK---KYDSIDNDITNATGISQVLTNGT-KGNYASAKLNLDVFYKK-IGVMLEII 406 (525) T ss_pred eEEEeccceeecccccccCcccCCCch---hhhhhhhhhhhhhccceeeecCC-CCceeeeeeeHHHHHHH-HHHHHHHH Confidence 5443 32 222222222 111222 24566789999999999999875 55899988888888875 66688888 Q ss_pred HHHHHHhh---cCc-ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCC------------cccc Q lcl|Aclame:pro 329 ELLLDEAL---ETG-ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAG------------GDAL 392 (454) Q Consensus 329 e~~l~~~l---~~~-~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~------------~d~~ 392 (454) ++..+..+ ++. ....+-|+++.-...+.+.+.+.+-++...|+. .--+.+..|+.-.|. .++- T Consensus 407 ee~y~kL~d~Vl~~~k~~nyifnydkd~pi~~kkk~d~LIkL~d~g~s-~k~vldl~gis~e~y~E~s~yEtE~lkl~EK 485 (525) T protein:vir:10 407 EEIYNQLIDIILGEEKGCNYIFQYNKDTPIEREKKLDTLIKLEAQGYS-AKYVLDILGISSEEYFEESIYEIEKLKLREK 485 (525) T ss_pred HHHHHHHHhhhcCcccCcceEEecCCCchhhhhhhhhhhhhhhccchh-hhhhhhhhccCcchHHHHHHHHHHHHHHhhh Confidence 86555432 332 233456777766667888888888888888874 333334444321111 0111 Q ss_pred ccc-cccccccccccccccccCCCccCcccCCCCCCcccCcccccccccccHHHHHHHHH Q lcl|Aclame:pro 393 YLQ-QQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDAVKAMFRGI 451 (454) Q Consensus 393 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a~~~~~ 451 (454) .+| .+...+.+ ..++..+.|..+.++ +...+.++..|+. T Consensus 486 i~pp~~~~v~SG------------k~~n~iG~P~~dd~~--------~~dati~s~~~~~ 525 (525) T protein:vir:10 486 IMPPLNTNVLSG------------KDGNDIGSPKLDDSD--------SSDATIESKERGV 525 (525) T ss_pred ccccccceeeec------------cccccccCCccCCCc--------chhhhhhhhhcCC Confidence 111 11111100 001111111100000 0011122222333 No 221 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=95.76 E-value=0.0015 Score=36.05 Aligned_cols=392 Identities=12% Similarity=0.020 Sum_probs=179.5 Q ss_pred CcchhhhhccccccccccCcccc--hhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhccc--------- Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGW--TSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKM--------- 69 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~--------- 69 (454) |- -.++++......+ ..-|++. |+...-.+-....--.++-.+..+.+ T Consensus 1 ~~--------~~~~~~~~~~~~~~g~~~~p~~-------------v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~ 59 (527) T protein:vir:10 1 MG--------QDKRQYGSTQQLRAGEANFPNA-------------VTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDE 59 (527) T ss_pred CC--------ccccccCCCcCcCCccccCccc-------------CCHHHHHHHHHHHHHHHHhcCchhheeeecCCccc Confidence 11 1111111111000 0000000 11100000000000011111111111 Q ss_pred -------------------ceEEEecc--ccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC Q lcl|Aclame:pro 70 -------------------RLRLMQTD--AQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA 128 (454) Q Consensus 70 -------------------~~~~~~~~--~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~ 128 (454) .|.+..-+ .++.. +.-...+..+.++ .++....++.-.+.++.|.++..++++. T Consensus 60 ~~~r~~~~ps~~~~~~~~~~~~~~g~~~~~~~~~-e~v~~~lr~~~~~----e~l~~~~~~~~r~~~vlGDg~f~l~wD~ 134 (527) T protein:vir:10 60 GDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKD-AKVDDAIKVLFDR----ENWEQKFESLKRWTEIRGDYVLLLIGDD 134 (527) T ss_pred cccceeeehhhHHhhCCcceeeccCccccccchh-HHHHHHHHHHHHH----hhhHHHHHHHHHhhhhhcceeEEEeecc Confidence 01110000 00110 1112222333333 3444466666777788999988888875 Q ss_pred C---CceeEEEEecCcceEEEECCCCc---eeeEEe----cc---------------------cc--cccc-----c--- Q lcl|Aclame:pro 129 R---GQIKELRILDWNRVEPLVADDGE---VFYRIT----PD---------------------RN--CGIT-----E--- 167 (454) Q Consensus 129 ~---G~~~~l~~l~~~~~~~~~~~~g~---~~~~~~----~~---------------------~~--~~~~-----~--- 167 (454) + |.-..+..++|..+-++.+.++. ..++.. .. .. ...| + T Consensus 135 ~k~~~~R~~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w 214 (527) T protein:vir:10 135 EKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELY 214 (527) T ss_pred CCCcCCCceEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeecee Confidence 3 34567788888777776655432 011000 00 00 0000 0 Q ss_pred ------------------------------eeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 168 ------------------------------AVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRN 217 (454) Q Consensus 168 ------------------------------~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~n 217 (454) +..+..-.|+|++..++.+..+|.|-|.-+...++..+....-......- T Consensus 215 ~lg~w~d~~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~ 294 (527) T protein:vir:10 215 EPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF 294 (527) T ss_pred eccccccccccccchhhhhhhcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHH Confidence 00011223578888888899999999887776666665555444444445 Q ss_pred cCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhh Q lcl|Aclame:pro 218 GGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYK 297 (454) Q Consensus 218 g~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~ 297 (454) ++.|-.+++.-.... .+......-- --|.++=|+++.++..++..+.-..+........+.|+..=++|.+- T Consensus 295 sG~Pi~~~tg~~~vd------~~G~~~~~~V--gPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA 366 (527) T protein:vir:10 295 GGLGFYATDSAPPRD------SRGNMVPWTI--SPLGMVEHGQNNKIYRVNGVASLEPSQTHMTKAEEAMQQTKGIPDIA 366 (527) T ss_pred hCCceeeeccccccc------ccCCcCcccc--CCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeee Confidence 666666654322210 0000000000 12334557888899988887766667888899999999999999999 Q ss_pred hcccccccccCHHHHHHHHHHHHHHHHHHHHHH----------HHH-----Hhh-------cCc--ccceeeecchhhhh Q lcl|Aclame:pro 298 IGVGQPPSSDNVEALEQQYYSQCLQTLIESIEL----------LLD-----EAL-------ETG--ENESTEFDVTTLLR 353 (454) Q Consensus 298 lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~----------~l~-----~~l-------~~~--~~~~~~f~~~~l~~ 353 (454) +|..+.++--+ .... .-.+.|++.+.+. .+. +.| +.+ ....+++.|...+. T Consensus 367 ~G~vD~s~~~S--G~AL---eL~L~PLlar~~rk~L~~~~vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP 441 (527) T protein:vir:10 367 VGVVDAAVAES--GIAL---DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKP 441 (527) T ss_pred eccccCCcCcH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCC Confidence 99666543212 1111 1233444432211 111 111 011 11245677788899 Q ss_pred cCHHHHHHHHHHHHhCCCcCHHHHHHHh---cCCCCCCcc--ccc---cccccccccccccccccccCCCccCcccCCCC Q lcl|Aclame:pro 354 MDSERRMKTLGDAVKNTLLTPNEARKRE---NLPPLAGGD--ALY---LQQQNYSLEALSRRDAREDPFASSGKTASVPQ 425 (454) Q Consensus 354 ~d~~~~~~~~~~~~~~g~~T~NE~R~~~---g~~p~~~~d--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (454) .|.++.++...+++.+|+++.--+-++| |.-..++.+ ++. ........+...+.... .+...+.+. T Consensus 442 ~D~~avie~v~tL~~aGi~S~~tAv~~L~~~~g~eD~E~E~~~I~~era~~a~a~a~A~~~~~a~------~~~~~g~~~ 515 (527) T protein:vir:10 442 VNSEKRFNQLLQLWEAGLIPAKKLTEELSKIMGFELTEEDFKQATEDKKTQGIAQAEAADPFGAQ------MAAEQGIPD 515 (527) T ss_pred CCHHHHHHHHHHHHHcCchhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhHHhhhhcCchhhh------hccccCCCC Confidence 9999999999999999999988887777 221122222 111 00111111111111111 111111122 Q ss_pred CCcccCcccccc Q lcl|Aclame:pro 426 AVAASDGNKAIT 437 (454) Q Consensus 426 ~~~~~d~~~~~~ 437 (454) ..+.+-++..+. T Consensus 516 ~~~d~~~~~~~~ 527 (527) T protein:vir:10 516 EEDDQALNGQPL 527 (527) T ss_pred CCcccccCCCCC Confidence 222222343333 No 222 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=95.71 E-value=0.0016 Score=35.93 Aligned_cols=392 Identities=12% Similarity=0.019 Sum_probs=179.5 Q ss_pred CcchhhhhccccccccccCcccc--hhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhccc--------- Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGW--TSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKM--------- 69 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~--------- 69 (454) |- -.++++......+ ..-|++. |+...-.+-....--.++-.+..+.+ T Consensus 1 ~~--------~~~~~~~~~~~~~~g~~~~p~~-------------v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~ 59 (527) T protein:vir:10 1 MG--------QDKRQYGSTQQLRAGEANFPNA-------------VTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDE 59 (527) T ss_pred CC--------ccccccCCCcCcCCccccCccc-------------CCHHHHHHHHHHHHHHHHhcCchhheeeecCCccc Confidence 11 1111111111000 0000000 11100000000000011111111111 Q ss_pred -------------------ceEEEecc--ccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC Q lcl|Aclame:pro 70 -------------------RLRLMQTD--AQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA 128 (454) Q Consensus 70 -------------------~~~~~~~~--~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~ 128 (454) .|.+..-+ .++.. +.-...+..+.++ .++....++.-.+.++.|.++..++++. T Consensus 60 ~~~r~~~~ps~~~~~~~~~~~~~~g~~~~~~~~~-e~v~~~lr~~~~~----e~l~~~~~~~~r~~~vlGDg~f~l~wD~ 134 (527) T protein:vir:10 60 GDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKD-AKVDDAIRVLFDR----ENWEQKFESLKRWTEIRGDYVLLLIGDD 134 (527) T ss_pred cccceeeehhhHHhhCCcceeeccCccccccchh-HHHHHHHHHHHHH----hhhHHHHHHHHHhhhhhcceeEEEeecc Confidence 01110000 00110 1112222333333 3444466666777788999988888875 Q ss_pred C---CceeEEEEecCcceEEEECCCCc---eeeEEe----cc---------------------cc--cccc-----c--- Q lcl|Aclame:pro 129 R---GQIKELRILDWNRVEPLVADDGE---VFYRIT----PD---------------------RN--CGIT-----E--- 167 (454) Q Consensus 129 ~---G~~~~l~~l~~~~~~~~~~~~g~---~~~~~~----~~---------------------~~--~~~~-----~--- 167 (454) + |.-..+..++|..+-++.+.++. ..++.. .. .. ...| + T Consensus 135 ~k~~~~R~~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w 214 (527) T protein:vir:10 135 EKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELY 214 (527) T ss_pred CCCcCCCceEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeecee Confidence 3 34567788888777776655432 011000 00 00 0000 0 Q ss_pred ------------------------------eeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 168 ------------------------------AVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRN 217 (454) Q Consensus 168 ------------------------------~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~n 217 (454) +..+..-.|+|++..++.+..+|.|-|.-+...++..+....-......- T Consensus 215 ~lg~w~d~~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~ 294 (527) T protein:vir:10 215 EPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF 294 (527) T ss_pred eccccccccccccchhhhhhhcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHH Confidence 00011223578888888899999999887776666665555444444445 Q ss_pred cCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhh Q lcl|Aclame:pro 218 GGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYK 297 (454) Q Consensus 218 g~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~ 297 (454) ++.|-.+++.-.... .+......-- --|.++=|+++.++..++..+.-..+....+...+.|+..=++|.+- T Consensus 295 sG~Pi~~~tg~~~vd------~~G~~~~~~V--gPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA 366 (527) T protein:vir:10 295 GGLGFYATDSAPPRD------SRGNMVPWTI--SPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIA 366 (527) T ss_pred hCCceeeeccccccc------ccCCcCcccc--CCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeee Confidence 666666654322210 0000000000 12334557888899988887766667888899999999999999999 Q ss_pred hcccccccccCHHHHHHHHHHHHHHHHHHHHHH----------HHH-----Hhh-------cCc--ccceeeecchhhhh Q lcl|Aclame:pro 298 IGVGQPPSSDNVEALEQQYYSQCLQTLIESIEL----------LLD-----EAL-------ETG--ENESTEFDVTTLLR 353 (454) Q Consensus 298 lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~----------~l~-----~~l-------~~~--~~~~~~f~~~~l~~ 353 (454) +|..+.++--+ .... .-.+.|++.+.+. .+. +.| +.+ ....+.+.|...+. T Consensus 367 ~G~vD~s~~~S--G~AL---eL~L~PLlar~~rk~L~~~~Vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP 441 (527) T protein:vir:10 367 VGVVDAAVAES--GIAL---DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKP 441 (527) T ss_pred eccccCCcCcH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCC Confidence 99666543212 1111 1233444332211 111 111 011 11245677788899 Q ss_pred cCHHHHHHHHHHHHhCCCcCHHHHHHHh---cCCCCCCcc--ccc---cccccccccccccccccccCCCccCcccCCCC Q lcl|Aclame:pro 354 MDSERRMKTLGDAVKNTLLTPNEARKRE---NLPPLAGGD--ALY---LQQQNYSLEALSRRDAREDPFASSGKTASVPQ 425 (454) Q Consensus 354 ~d~~~~~~~~~~~~~~g~~T~NE~R~~~---g~~p~~~~d--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (454) .|.++.++...+++.+|+++.--+-++| |.-..++.+ ++. ........+...+.... .+...+.+. T Consensus 442 ~D~~avie~v~tL~~aGiiS~etAv~~L~~~~g~eD~E~E~~~I~~era~~a~a~a~a~~~~~a~------~~~~~g~~~ 515 (527) T protein:vir:10 442 VNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQ------MAAEQGIPD 515 (527) T ss_pred CCHHHHHHHHHHHHHcCchhHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhHHhhhhcCchhhh------hccccCCCC Confidence 9999999999999999999988887777 221122222 111 01111111111111111 011111122 Q ss_pred CCcccCcccccc Q lcl|Aclame:pro 426 AVAASDGNKAIT 437 (454) Q Consensus 426 ~~~~~d~~~~~~ 437 (454) ..+.+-++..+. T Consensus 516 ~~~d~~~~~~~~ 527 (527) T protein:vir:10 516 EEDDQALNGQPL 527 (527) T ss_pred CCcccccCCCCC Confidence 222222343333 No 223 >protein:vir:80165 Length: 651 # NCBI annotation: portal protein # Family: family:all:1548 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285799;genbank:gi:148747833;genbank:GeneID:5220441 Probab=95.45 E-value=0.002 Score=35.33 Aligned_cols=418 Identities=11% Similarity=0.043 Sum_probs=156.4 Q ss_pred CcchhhhhccccccccccCcccchhhh----------hhhh-hhccccccCCccccHHHHHhhHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLF----------QAVA-EPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKM 69 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~ 69 (454) +...|++... .+..-...|..-. .+.. ..+... .......+...-.+.|+.+|+.+...+.++ T Consensus 25 ~~~~~~~~~~----~r~~~~~~w~~~~~~~~~~~~~~~y~~~~~~~~~--~~~~~~~rs~~~~~~v~~~ve~~~~~l~~~ 98 (651) T protein:vir:80 25 VKKEYKRFCD----ARQVCEETWLEAWGMYLSTPEAQDYLRDQVLRSV--GDVNADWRHKITTGKAFEAIETIHAYLMSA 98 (651) T ss_pred HHHHHHHHHH----HhhhhhhhHHHHHHhhcccHHHHHhhcccccccc--CCCCCCCCccccChhHHHHHHHHHHHHHHh Confidence 2222322222 1111111221110 1110 000000 000011112234577888887655555442 Q ss_pred -----ce-EEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC-------------- Q lcl|Aclame:pro 70 -----RL-RLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR-------------- 129 (454) Q Consensus 70 -----~~-~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~-------------- 129 (454) +| ++.+ ..+..........+..++..--...+.......++.+.++.|++++.+.++.. T Consensus 99 ~~~~~~~~~~~p-~~~~d~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~l~~G~~i~kv~we~~~~~~~~~~~~~~~~ 177 (651) T protein:vir:80 99 TFPNKNWFDVVP-AKPGQDNLLVSRLIKRYVQDKLTEGKFRAAYANFLRQLLITGNSVLALPWRVETAEVKKKVQVRTPL 177 (651) T ss_pred hcCCCceeEecc-CCchhHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHhhcccCceEEEEeecceeeeeehheeccccc Confidence 22 2221 11111111112222223332112234566777888999999999876543210 Q ss_pred --Cce--------------eEEEEecCcceEEEECCCC----c------------------------------------- Q lcl|Aclame:pro 130 --GQI--------------KELRILDWNRVEPLVADDG----E------------------------------------- 152 (454) Q Consensus 130 --G~~--------------~~l~~l~~~~~~~~~~~~g----~------------------------------------- 152 (454) |.+ ..+..++|..+-+.+...+ . T Consensus 178 ~~~~~~~~v~~~~~~~~~~~~i~~v~p~~~~~dp~a~~~~d~~~v~~~~~t~~~l~~l~~~g~~~~~~~~~~~~~~~~~~ 257 (651) T protein:vir:80 178 FEDEPTFEVVSEEREVKSSPDFEVLDMFDCFYDPNVTDPNRGAFIRKLTKTKADILNLLSEGYYYGVDPLDVVEHKCKDT 257 (651) T ss_pred cccccceeeeccceeeeceeEEEEecHHHeeecCCCcCccccceeeeeeeeHHHHHHHHhcccccchhhHHHHhhhcccc Confidence 000 1223333332222211000 0 Q ss_pred -------------------------eeeEEec--cccccc---------cc------eeEE-ehhheEEeecCCCcCccc Q lcl|Aclame:pro 153 -------------------------VFYRITP--DRNCGI---------TE------AVTV-PAREVIHDRFNCFFHPLI 189 (454) Q Consensus 153 -------------------------~~~~~~~--~~~~~~---------~~------~~~~-~~~~vih~~~~~~~~~~~ 189 (454) ..|.+.. +..... +. ...+ .....++++..+..+..| T Consensus 258 ~~~~~~~~~~~~~~d~~~~~~~~~v~v~E~~~~~d~e~~~~~~~~v~~~g~~il~~~~~~~~~~~Pf~~~~~~~~~~~~y 337 (651) T protein:vir:80 258 SDTKQDMLSTFQGVTTSLWSPHQNVELLEYWGDIHLENKTYHDVVVTIMGNEVLRFEQNPYWCGRPFVIGTYIPTARQPY 337 (651) T ss_pred ccCCccccccccCCCccccccccceEEEEEEEEeeccCCceEEEEEEEcCcEEecccccCCCCCCCeeeecceecCcccc Confidence 0111100 000000 00 0000 012345555555667789 Q ss_pred ccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccc Q lcl|Aclame:pro 190 GLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTF 269 (454) Q Consensus 190 G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~ 269 (454) |.|++..+...+...+...+...........|.+.+.-+.-...+. +.. .-|+++++....++.++.. T Consensus 338 G~g~~~~~~~~q~~ln~l~~~~ld~~~~~~~~~~~v~~d~~~~~~~-------l~~-----~pg~vi~~~~~~~~~~l~~ 405 (651) T protein:vir:80 338 AMGALQPNLGMLHELNIITNQRLDNLELAIDQMYTLRSDGLLQPED-------VYT-----EPGKVFLVSDHGDLQPLAN 405 (651) T ss_pred CCChHHHHhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCccccHHH-------hhc-----CCCceEEecCCCCceeecc Confidence 9999999999999999999988888888888887765443333332 111 1345666665555656543 Q ss_pred cchhhH-HHHHHHHHHHHHHHHhccchhhhccccccc-ccCHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcC------- Q lcl|Aclame:pro 270 SPVDSQ-TVEQLKMTAEIVCSVFRVPAYKIGVGQPPS-SDNVEA--LEQQYYSQCLQTLIESIELLLDEALET------- 338 (454) Q Consensus 270 ~~~d~~-~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~-~~n~e~--~~~~~~~~~i~P~~~~ie~~l~~~l~~------- 338 (454) .+.+.+ .....+.....+-..+||+....|....+. .-|+.+ +...-....+.+++..+..++..-|+. T Consensus 406 ~~~~~~~~~~~l~~l~~~~~~~~gv~~~~~g~~~~~~~~~TAteI~~~~~~~~~~l~~v~~~l~~e~l~pl~~r~l~l~~ 485 (651) T protein:vir:80 406 QSSNFSITYQESSFLESTIDKNFGTGNYVGANAARSGERVTAAEVAAVREAGGNRLSGIHKHIEETSLLVLLEKVMHLVQ 485 (651) T ss_pred CcccchhHHHHHHHHHHHHHHHhcCChHHhCCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 322222 234567777788999999998887654321 112222 233334455666666666553322210 Q ss_pred -----cc-----cc-------------ee--eecchhhhhcCHH---HHHHHHHHHHhCCCcCH------------HHHH Q lcl|Aclame:pro 339 -----GE-----NE-------------ST--EFDVTTLLRMDSE---RRMKTLGDAVKNTLLTP------------NEAR 378 (454) Q Consensus 339 -----~~-----~~-------------~~--~f~~~~l~~~d~~---~~~~~~~~~~~~g~~T~------------NE~R 378 (454) +. +. .+ .+++..+-..... .....+..+++.+...+ -++. T Consensus 486 ~~~~~~~~~ri~~~~~~~~~~~~i~~~dl~~~~~iv~~g~~~~~~r~~~~~~l~~~~q~~~~~p~~~~~~~~~~~~~~l~ 565 (651) T protein:vir:80 486 QFTDQPGMVRVAGDEAGAYEYYELDVEDLQKEVRLVPIGSDHVIERKQYIEDRLTFIQAVAQVPEMGQLVDYKRILVDLL 565 (651) T ss_pred HhcCcccceeecccccccccccccCccceeeeeeeeeccHHHHHHHHHHHHHHHHHHHhhccCCccchhhhHHHHHHHHH Confidence 00 00 01 1111111000001 11222222222111000 1111 Q ss_pred HHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCc-ccCcccc--------ccccc--ccHHHHH Q lcl|Aclame:pro 379 KRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVA-ASDGNKA--------ITETE--HDAVKAM 447 (454) Q Consensus 379 ~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~--------~~~~~--~~~~~a~ 447 (454) +..|+ +..+.++.+..-.. ..+. ++. ...+... ......+ ..... .+..+.. T Consensus 566 ~~~g~---~~~~~~l~~~~q~~------------~~~~-~~~-~~~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (651) T protein:vir:80 566 QHWGF---EEPEAYLKQQDQQA------------PANP-QEA-LLSQAKDVGGQAMSNMLQNQLQADGGTQMMSEMYGTP 628 (651) T ss_pred HHcCC---CCcHHhcCCCccch------------hhhh-hHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22233 12222211110000 0000 000 0000000 0000000 00000 0000000 Q ss_pred ----HHH-------HhcC Q lcl|Aclame:pro 448 ----FRG-------ILKK 454 (454) Q Consensus 448 ----~~~-------~~~~ 454 (454) +.+ .||+ T Consensus 629 ~~~~~~~~~~~~~~~l~~ 646 (651) T protein:vir:80 629 NADQMQQELMATTPNVSE 646 (651) T ss_pred HHHHHHHHHHHHHHHHHH Confidence 000 0000 No 224 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=95.11 E-value=0.0027 Score=34.63 Aligned_cols=427 Identities=11% Similarity=0.113 Sum_probs=168.2 Q ss_pred Ccc-hhhhhccc---ccccccc-Ccccchhhhhhhhhhcccccc--CC-cc------ccHHHHHhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MWN-LLRRTRKN---QKSGRDV-REAGWTSLFQAVAEPFAGAWQ--QG-VK------ADPEAVLSFHAVFACISLISQDI 66 (454) Q Consensus 1 m~n-~f~r~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~-~~------~~~~~~~~~~~v~~~i~~ia~~v 66 (454) |.- +|...... ..++.+. .+....+.....+..+.+.+. .+ .. -.-+..+.+|.|..||+-|.+.+ T Consensus 1 ~~~~lfg~~i~~~~~~~~~~s~~~~~~~dg~~~~~~~~~~g~~~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVnea 80 (537) T protein:vir:10 1 MAQQLFGFSLQRAKKVPKGPSFVQKDSLDGSQPIVGGGYFGYSVDFDGTIRNDHELITRYREMVLNPECDSAVDDVVNET 80 (537) T ss_pred CccccccceeecccccccCCcccCCCcccccceeecccccccccccccccchHHHHHHHHHHHhhccchhhHHHHhhcce Confidence 433 22222111 1111111 111111111111111111111 11 00 11245667999999999998877 Q ss_pred ccc-----ceEEEeccccccceehhh---hHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC---CceeEE Q lcl|Aclame:pro 67 AKM-----RLRLMQTDAQGIRRETRR---GDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR---GQIKEL 135 (454) Q Consensus 67 a~~-----~~~~~~~~~~~~~~~~~~---~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~---G~~~~l 135 (454) .-+ |..+.-.+-+. ....+. .....+++--+.... -+.++..|.+.|..|..++-+.+ .-..+| T Consensus 81 iv~d~~~~pV~i~Ld~~~~-s~~iK~kI~eEF~~Il~ll~F~~~----~~e~fR~WYVDgRi~fhKiid~k~pk~GI~EL 155 (537) T protein:vir:10 81 ICGNFDDVPISIDLHNLKQ-SEKIKKLIRSEFDEILRLLDFDNR----AYEIFRRWYVDGRLFFHKVIDPKKPRQGLVEL 155 (537) T ss_pred eEecCCCceEEEEeccccc-chHHHHHHHHHHHHHHHHhccchh----hhHHHhhheeeeEEEEEEEEeCCCccccceee Confidence 533 22221111000 001111 111112222222333 34556668889999988865432 248899 Q ss_pred EEecCcceEEEECC-----CCce-------e------eEEecc--ccccccceeEEehhheEEeecC--CCcCcccccch Q lcl|Aclame:pro 136 RILDWNRVEPLVAD-----DGEV-------F------YRITPD--RNCGITEAVTVPAREVIHDRFN--CFFHPLIGLPP 193 (454) Q Consensus 136 ~~l~~~~~~~~~~~-----~g~~-------~------~~~~~~--~~~~~~~~~~~~~~~vih~~~~--~~~~~~~G~s~ 193 (454) ..|+|-.++.++.- ++.. . |+.+.. .....+..+.++. +.|++-+. -..+..+.+|- T Consensus 156 r~lDPr~i~~vR~i~~~~~~~~~~~~~~~~v~~~~~eyf~ynp~g~~~~~~~~vkI~~-dAI~y~hSGl~d~n~~~i~sy 234 (537) T protein:vir:10 156 RYVDPRKIRKVTEYEAKRPEALRTQDLNQQLTQQSASYFLYNPKGLKNSTNQGMKIAP-DSIAYCHSGIQDLNKNMVLSH 234 (537) T ss_pred eeeCCccceeeEeecccCCccceEEecceeeeecccceeeeccccccccCCCceeccH-hheeeecccceeCCCCeeeee Confidence 99999998655431 1111 0 111110 0011223455665 44554431 23344567888 Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccC-CHHHHHHH----HHHHHHHh-----cC--cccCCce-e--- Q lcl|Aclame:pro 194 VYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI-TEENAKKL----KSNWDSGY-----TG--ENAGKTA-I--- 257 (454) Q Consensus 194 l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~-s~e~~~~~----~~~~~~~~-----~g--~n~g~~~-v--- 257 (454) |..+...+....-++...-=+--..+.-+-|+.++-+. -...+++. ..++++.+ .| .+..+.+ . T Consensus 235 LhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMlED 314 (537) T protein:vir:10 235 LHKAIKAVNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKFMSMLED 314 (537) T ss_pred ehhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhhhhhhh Confidence 88888877766666666555544455555566565332 22233333 33443322 12 1111111 2 Q ss_pred --cC-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccC---HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 258 --LS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDN---VEALEQQYYSQCLQTLIES 327 (454) Q Consensus 258 --l~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n---~e~~~~~~~~~~i~P~~~~ 327 (454) |+ .|.+++.|.-.. .+.-++-..+..+.+.++++||.+-|+.....+... +.-....|.+ .|.-+..+ T Consensus 315 yWLPRReGgrgTEItTLpGgq-nlgem~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~K-FI~RLR~r 392 (537) T protein:vir:10 315 FWLPRREGGRGTEISTLPGGQ-NLGELEDVKYFQKKLYKALNVPSSRLETETTFNIGRAAEITRDEVKFQK-FIARLRKR 392 (537) T ss_pred hcccccCCCcccceeeccccC-CcChHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHH-HHHHHHHH Confidence 22 356777665432 233345567888899999999999997654433322 2222223333 35556666 Q ss_pred HHHHHHHhhcC---------ccc-----ceeeec--chhhh----h-cCHHHHHHHHHHHHh-CC-CcCHHHHHH-HhcC Q lcl|Aclame:pro 328 IELLLDEALET---------GEN-----ESTEFD--VTTLL----R-MDSERRMKTLGDAVK-NT-LLTPNEARK-RENL 383 (454) Q Consensus 328 ie~~l~~~l~~---------~~~-----~~~~f~--~~~l~----~-~d~~~~~~~~~~~~~-~g-~~T~NE~R~-~~g~ 383 (454) +...|...|-+ ... ..++|+ .|.-. . .-...+++.+..+-. .| .++.+=+|+ .|.+ T Consensus 393 Fs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~dyi~k~ILr~ 472 (537) T protein:vir:10 393 FSELFVDLLKTQLILKGICSIEEWEEMKEHIQFDFIADNYFTELKEIEIRNERMNEVAQMDPYVGKYFSANYIRTKVLKQ 472 (537) T ss_pred HHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcc Confidence 66555544321 111 133333 33211 0 111223333332211 11 122222221 1222 Q ss_pred CCC-----------CCccccccc-cccccccccc-cccccccCCCccCcccCCCCCCcccCcccc Q lcl|Aclame:pro 384 PPL-----------AGGDALYLQ-QQNYSLEALS-RRDAREDPFASSGKTASVPQAVAASDGNKA 435 (454) Q Consensus 384 ~p~-----------~~~d~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 435 (454) .-. +-.+..+.. .....++... .....+......+.......+|....+.+- T Consensus 473 tDeeI~~~~k~I~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (537) T protein:vir:10 473 TESEIKEIDKEIKQEIADGVIMDPQAMQAMEMGIGDEEPVPEGGEEPQTDPNSAVSPADQKRGEL 537 (537) T ss_pred CHHHHHHHHHHHHHHhhCCCCCCcccccccccCCCCcccCCCCCCCcccCCccCCCCCCccCCCC Confidence 100 000011110 0000000000 000000000000000000111111111111 No 225 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=94.56 E-value=0.0041 Score=33.69 Aligned_cols=403 Identities=12% Similarity=0.002 Sum_probs=150.6 Q ss_pred CcchhhhhccccccccccCcccchhh---hhhhh------hhccccccC--Ccc---ccHHHHHhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSL---FQAVA------EPFAGAWQQ--GVK---ADPEAVLSFHAVFACISLISQDI 66 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~--~~~---~~~~~~~~~~~v~~~i~~ia~~v 66 (454) |-|.=++. +. ......-|.-+ ..+.. .-+...... ... -..+.++.-...+.....+-+.+ T Consensus 1 m~~V~~~h--p~---y~~~~~~W~~ird~~~G~~~~r~~g~~YLP~~~~e~~~~e~~~~Y~~rl~rA~~~n~~~~t~~~l 75 (501) T protein:vir:95 1 MPNVSFIR--PE---LGKLLPLYYLIRDAIAGEPTVKGARTTYLPMPNAEDQSKENKARYEAYLKRAVFYNVARRTLFGL 75 (501) T ss_pred CCCCCCCC--HH---HHHHHHHHHHHHHHhcChHHHHhcccccCcCCCCCCCcccchHHHHHHhhccccCchHHHHHHHH Confidence 55521100 00 00000001000 00000 000000000 000 01123333333333333333333 Q ss_pred cccceEEEeccccccceehhhhHHHHhhhhc-cccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCc----e--------- Q lcl|Aclame:pro 67 AKMRLRLMQTDAQGIRRETRRGDIARLCRRP-NAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQ----I--------- 132 (454) Q Consensus 67 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p-n~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~----~--------- 132 (454) .+..|.-...- . ....+..|+.+. -...+-.+|.+.++...+.+|.+++++-....+. . T Consensus 76 ~G~vf~k~p~~------~-~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~t~a~~~~~~~ 148 (501) T protein:vir:95 76 VGQVFMRDPVV------K-VPALLNPLVANATGSGINLTQLAKRAVSLNLAYSRAGLLVDYPTTEAEGGASIADLEAGRI 148 (501) T ss_pred hhhhhcCCcce------e-CcHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccccHHHHHhccC Confidence 33333211000 1 122233344333 2456889999999999999999999886432211 0 Q ss_pred -eEEEEecCcceEEEE---------------------------------------CCCCceeeEEeccccccc------- Q lcl|Aclame:pro 133 -KELRILDWNRVEPLV---------------------------------------ADDGEVFYRITPDRNCGI------- 165 (454) Q Consensus 133 -~~l~~l~~~~~~~~~---------------------------------------~~~g~~~~~~~~~~~~~~------- 165 (454) -.+..+.|..|--+. +.+|...+++........ T Consensus 149 rPy~~~~~~~~IinW~~~~v~g~~~l~~v~l~E~~~~~d~~f~~~~~~q~RvL~~~~~g~~~~~v~r~~~~~~~~~~~~~ 228 (501) T protein:vir:95 149 RPTLYVYSPTEIINWRTTDRGAEEVLSLVVLFETWCAADDGFEMKTSGQFRVLRLDEEGYYVHEIWREPQPTKADGSKIP 228 (501) T ss_pred CcEEEEecHhhhcCcceeccCCceeeeEEEEEEEEeecCCCcccceeEEEEEEeeCCCceEEEEEEEecCCcccCcceec Confidence 123333333321111 011211111111000000 Q ss_pred -c------ce-------eEEehhheEEeecCCCcCcccccchhhhhH-hHHHHHHHHHHHHHHHHhccCCcceeEecCcc Q lcl|Aclame:pro 166 -T------EA-------VTVPAREVIHDRFNCFFHPLIGLPPVYAAG-LAATQGHHIQENSTSFFRNGGRPSGVIEIPGS 230 (454) Q Consensus 166 -~------~~-------~~~~~~~vih~~~~~~~~~~~G~s~l~~~~-~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~ 230 (454) + .. ..+..-.++++ .....+...|.+|+..++ -.|..+.....+... +...+.|..+++-. T Consensus 229 ~~~~~~~~~~~~~~~g~~~l~~IPfv~~-~~~~~~~~~~~pPLl~lA~lni~hy~~ssd~~~~-l~~~~~P~l~i~G~-- 304 (501) T protein:vir:95 229 KGNYQQYVVYKPTDAQGKRLTEIPFMFI-GSENNDSNPDNPNFYDLASLNMAHYRNSADYEES-CYIVGQPTPVLIGL-- 304 (501) T ss_pred CCcccccceeeeeccCCCcCCeeeEEEE-ecCCCCCCCCccchHHHHHHHHHHHhhhhHHHHH-HHHcccceeeeeCC-- Confidence 0 00 00000001222 122333445777876544 344444444444444 44556677766432 Q ss_pred CCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHH Q lcl|Aclame:pro 231 ITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVE 310 (454) Q Consensus 231 ~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e 310 (454) +++..+.... ....-|.+ ..+.++.|.++.=+..++.-+. .+..+...+++..+ | ..++......-.++.. T Consensus 305 -~~~~~~~~~~--~~i~~G~~--~~~~lP~~~~~~~ie~~~~~i~-~~~l~~l~~~m~~~-G--a~ll~~~~~~~Ta~~~ 375 (501) T protein:vir:95 305 -TEEWVTNVLK--GSVNFGSR--GGIPLPVGADAKLLQASENTML-KEAMDTKERQMVAL-G--AKLVEQKEVQRTATEA 375 (501) T ss_pred -cccccccCCC--Cceeeccc--ccccCCCCCceeEEecChhhHH-HHHHHHHHHHHHHH-H--HhhccCCccchhHHHH Confidence 2221110000 01112333 3567776665554444443332 23333333343332 2 1222211111112223 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc--------CcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhc Q lcl|Aclame:pro 311 ALEQQYYSQCLQTLIESIELLLDEALE--------TGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKREN 382 (454) Q Consensus 311 ~~~~~~~~~~i~P~~~~ie~~l~~~l~--------~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g 382 (454) .....-..+.|.-++..+++.+++.|- .+....+.++.+-.........+..+.+++..|.++....++.+- T Consensus 376 ~~~~~~~~S~L~~~a~~le~al~~~l~~~a~w~g~~~~~~~v~i~~df~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~ 455 (501) T protein:vir:95 376 ELEAASEGSTLSSATKNVSAAFEWALKWAARWVGQADSGVKFELNTDFDIARMTPDERRSLVEEWQKGAITFEEMRTGLR 455 (501) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEecccccccCCHHHHHHHHHHHhCCCCcHHHHHHHHH Confidence 333333456677778888888887552 223334555444333333344567778899999999999887664 Q ss_pred CCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccccccccc Q lcl|Aclame:pro 383 LPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETE 440 (454) Q Consensus 383 ~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 440 (454) .--+.+.+....- ..+... ..+...... .... +...+|.....+.+ T Consensus 456 ~~~v~~~~~~~e~---e~i~~~------~~~~~~~~~--~~~~-~~~~~gg~~~~~~~ 501 (501) T protein:vir:95 456 KAGVATEDDSKAK---EKIAKD------TAEAMALAT--PANV-PGDGSGGDNVGNSE 501 (501) T ss_pred hCCCCChhHHHHH---HHHHhh------hcCcccccc--cCCC-CCCCcccccccCCC Confidence 3322221110000 000000 000000000 0001 11111222222222 No 226 >protein:vir:103177 Length: 533 # NCBI annotation: gp131 # Family: family:all:1036 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717798;genbank:gi:113200635;genbank:GeneID:4239186 Probab=92.73 E-value=0.01 Score=31.50 Aligned_cols=426 Identities=12% Similarity=0.128 Sum_probs=169.2 Q ss_pred Ccchhhhhccccccc---cccCcccc-hhhhhhhhhhcccccc--CC-cc-----c-cHHHHHhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSG---RDVREAGW-TSLFQAVAEPFAGAWQ--QG-VK-----A-DPEAVLSFHAVFACISLISQDIA 67 (454) Q Consensus 1 m~n~f~r~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~--~~-~~-----~-~~~~~~~~~~v~~~i~~ia~~va 67 (454) |.-+|....+....+ .+..+... .+...-.+..+.+.+. .+ .. + .-+..+.+|.|..||+-|.+.+. T Consensus 1 m~~lfg~~i~~~~~~~~~~s~~~~~~~dg~~~i~~~~~~~~~~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneai 80 (533) T protein:vir:10 1 MSQLFGFSLERAKKAPKGPSFVQKDNLDGSQPVSGGGYYGYTVDFDGQVRNEYQLISRYREMVLQPECDSAVDDIVNETI 80 (533) T ss_pred CccccccccccccccccCCCCCCCCcccccceeecccccceeeecccccchHHHHHHHHHHHhhccchhhHHHHhhccee Confidence 877776543332111 11101100 0000000111111111 01 10 0 12455678999999999987775 Q ss_pred ccc-----eEEEeccccccceehhhh---HHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC---CCceeEEE Q lcl|Aclame:pro 68 KMR-----LRLMQTDAQGIRRETRRG---DIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA---RGQIKELR 136 (454) Q Consensus 68 ~~~-----~~~~~~~~~~~~~~~~~~---~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~---~G~~~~l~ 136 (454) -+. ..+.-. ........+.. ....+++- +++..=-+.++..|.+.|..|..++-+. ..-..+|. T Consensus 81 v~d~~~~pV~i~Ld-~~~~s~~iK~kI~eEF~~Il~l----l~F~~~~~e~fR~WYVDgRi~fHkiid~~~pk~GI~ELr 155 (533) T protein:vir:10 81 CGNFDDVPVSVELS-NLKVSDKIKKLIREEFGEILRL----LDFENRSYEIFRRWYVDGRLFYHKVIDPDNPQGGLIELR 155 (533) T ss_pred eecCCCceEEEEec-ccccchHHHHHHHHHHHHHHHH----hccchhhhHHHhhhhhcceEEEEEEecCCCccccceeee Confidence 332 222110 00000011111 11112222 2222233455666888999998876553 23488999 Q ss_pred EecCcceEEEECC-----CCc-------------eeeEEeccc--cccccceeEEehhheEEeecCCC--cCcccccchh Q lcl|Aclame:pro 137 ILDWNRVEPLVAD-----DGE-------------VFYRITPDR--NCGITEAVTVPAREVIHDRFNCF--FHPLIGLPPV 194 (454) Q Consensus 137 ~l~~~~~~~~~~~-----~g~-------------~~~~~~~~~--~~~~~~~~~~~~~~vih~~~~~~--~~~~~G~s~l 194 (454) .|+|-.++.++.- ++. .-|+.+... ....+..+.++. +.|++-+... .++-.-+|-| T Consensus 156 ~lDPr~i~~vr~i~~~~~~~~~~~~~~~~v~~~~~eyf~Ynp~g~~~~~~~~vkI~~-dAI~y~hSGl~d~~~~~i~syL 234 (533) T protein:vir:10 156 YIDPRKIRKINETEQKRPEQLRGLPLNQQLSPKSAEYFLYDPKGLKNSTTQGLKIAP-DSICYVHSGIMDLNKNMTLSHL 234 (533) T ss_pred eccccceeeeeeeeccCCCccceeecchhhhccceeeeeeccccccccCCCceecch-hheeeeeccceeCCCCceeccc Confidence 9999999875321 111 111111111 111233455666 4455543221 1222335666 Q ss_pred hhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCcc-CCHHHHHHH----HHHHHHHh-----cCc--ccCCce-e---- Q lcl|Aclame:pro 195 YAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGS-ITEENAKKL----KSNWDSGY-----TGE--NAGKTA-I---- 257 (454) Q Consensus 195 ~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~-~s~e~~~~~----~~~~~~~~-----~g~--n~g~~~-v---- 257 (454) ..++..+....-++...-=+--..+.-+-|+.++-+ +-...+++. ..++++.+ .|. +..+.+ . T Consensus 235 hkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMlEDy 314 (533) T protein:vir:10 235 HKAIKAVNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKFMSMLEDF 314 (533) T ss_pred hHhHHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhhhhHhhh Confidence 666666665555555544443344444555555533 222233333 33443322 121 111111 2 Q ss_pred -cC-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccC---HHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 258 -LS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDN---VEALEQQYYSQCLQTLIESI 328 (454) Q Consensus 258 -l~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n---~e~~~~~~~~~~i~P~~~~i 328 (454) |+ .|.+++.|.-.. .+.-++-..+..+.+.++++||.+-|+....-+... +.-....|.+ .|.-+..++ T Consensus 315 WLPRReGgrgTEItTLpGgq-nLgem~DV~YF~kKLY~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~K-FI~RLR~rF 392 (533) T protein:vir:10 315 WLPRREGGRGTEITTLPGGQ-NLGELEDVKYFQKKLYKSLNVPGSRLETETTFNVGRAAEITRDEVKFQK-FVARLRKRF 392 (533) T ss_pred cccccCCCCccceeeccccC-CcChHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHH-HHHHHHHHH Confidence 22 356777765432 233345567888899999999999997654433322 2222233333 355566666 Q ss_pred HHHHHHhhcCc---------cc-----ceeeec--chhhh----h-cCHHHHHHHHHHHHh-CC-CcCHHHHHH-HhcCC Q lcl|Aclame:pro 329 ELLLDEALETG---------EN-----ESTEFD--VTTLL----R-MDSERRMKTLGDAVK-NT-LLTPNEARK-RENLP 384 (454) Q Consensus 329 e~~l~~~l~~~---------~~-----~~~~f~--~~~l~----~-~d~~~~~~~~~~~~~-~g-~~T~NE~R~-~~g~~ 384 (454) ...|...|-+. .. ..++|+ .|.-. . .-...+++.+..+-. .| .++.+=+|+ .|.+. T Consensus 393 s~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~t 472 (533) T protein:vir:10 393 SELFTDLLKTQLVLKGVISIEEWDQMKEHIQYDYIADNYFAELKEIEIRNERMNQVATMDPFVGKYFSVEYMRRQVLKQT 472 (533) T ss_pred HHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccC Confidence 66555444211 11 133333 33211 1 111223333333211 11 233333332 22322 Q ss_pred CC--CC---------ccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccccccccccHHHHHH Q lcl|Aclame:pro 385 PL--AG---------GDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDAVKAMF 448 (454) Q Consensus 385 p~--~~---------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a~~ 448 (454) -. .. .+.++.... ...+.......++..+ ......++++++.++. .+|++ T Consensus 473 Deei~~~~kqI~~E~k~~~~~~p~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----------~~~~~ 533 (533) T protein:vir:10 473 DVEMKEIDKQIESEMESGIIADPA-AEMDPAMAAGDPDAGG--APAEEVAPEGPDPSDE-----------RKAEF 533 (533) T ss_pred HHHHHHHHHHHHHHHhCCCCCCCc-chhhHHhcCCCCCcCC--cccccCCCCCCCcchh-----------hccCC Confidence 10 00 001111000 0000000000011000 0111111222221111 12222 No 227 >protein:vir:80453 Length: 535 # NCBI annotation: BcepGomrgp05 # Family: family:all:584 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210225;genbank:gi:146329917;genbank:GeneID:5123562 Probab=91.97 E-value=0.013 Score=30.85 Aligned_cols=408 Identities=11% Similarity=0.013 Sum_probs=145.4 Q ss_pred Ccchhhhhcccc-cccccc----Cccc-----------chhhhhhhhhhcccc---------cc---CCc---ccc---H Q lcl|Aclame:pro 1 MWNLLRRTRKNQ-KSGRDV----REAG-----------WTSLFQAVAEPFAGA---------WQ---QGV---KAD---P 46 (454) Q Consensus 1 m~n~f~r~~~~~-~~~~~~----~~~~-----------~~~~~~~~~~~~~~~---------~~---~~~---~~~---~ 46 (454) -.|.=+++.... +.+-+. ..++ ....+.-..+.+.|. +. ... ..+ . T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~m~dV~~~hp~y~a~~~~W~~ird~~~G~~~~r~~g~~YLP~~~~~~~~~E~~~~Y 86 (535) T protein:vir:80 7 TIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRY 86 (535) T ss_pred hhhhhhhhhcccCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhcChHHHHhcccccCCCCCcccCCcCCHHHH Confidence 111111111000 000000 0000 000000001111100 00 000 001 1 Q ss_pred HHHHhh----HHHHHHHHHHHHhhcccceEEEeccccccceehhhhHHHHhhhhc-cccCCHHHHHHHHHHHHHHhCCeE Q lcl|Aclame:pro 47 EAVLSF----HAVFACISLISQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRP-NAQQNRIQFFELWLNAKLRHGNTV 121 (454) Q Consensus 47 ~~~~~~----~~v~~~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p-n~~~~~~~f~~~~~~~~ll~G~~~ 121 (454) +.++.- +++...++.++..+.+-|..+ . ....+..|+.+. -...+-.+|++.++...+.+|-++ T Consensus 87 ~~rl~rA~~~n~~~~tl~~l~G~vfrk~p~~----------~-~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ 155 (535) T protein:vir:80 87 ETYLQRAIFYNVTARTLDGMMGQVFSRDPIR----------Q-LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAA 155 (535) T ss_pred HHHHhhccCCChhHHHHHHHhchhhcCCcce----------e-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEE Confidence 233333 334444444444444333322 1 122233444433 345688999999999999999999 Q ss_pred EEEeeCCCCce------------eEEEEecCcceEEEE---------------------CCCC--c---eeeEEecc--- Q lcl|Aclame:pro 122 VLKIRNARGQI------------KELRILDWNRVEPLV---------------------ADDG--E---VFYRITPD--- 160 (454) Q Consensus 122 i~~~r~~~G~~------------~~l~~l~~~~~~~~~---------------------~~~g--~---~~~~~~~~--- 160 (454) +++-....|.. -.+..+.|..|--+. .+++ . ..|++... T Consensus 156 iLVD~P~~~~~~t~ade~~~~~rPy~~~y~ae~IinW~~~~v~G~~~Lt~v~lrE~~~~~dd~f~~~~~~q~RvL~~~~~ 235 (535) T protein:vir:80 156 IFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAE 235 (535) T ss_pred EEEeecCCCCcccHHHHHhcCCCcEEEEechhhccCccccccCCccceeEEEEEEEEEecCCCcccceeEEEEEEEecCC Confidence 98865544321 112222222221111 0111 0 01111000 Q ss_pred -----------cc--ccccceeEEehh---------heEEeecCCCcCcccccchhhhh-HhHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 161 -----------RN--CGITEAVTVPAR---------EVIHDRFNCFFHPLIGLPPVYAA-GLAATQGHHIQENSTSFFRN 217 (454) Q Consensus 161 -----------~~--~~~~~~~~~~~~---------~vih~~~~~~~~~~~G~s~l~~~-~~~i~~~~~~~~~~~~~~~n 217 (454) .. ........++.+ .++++. ....+...|.+|+..+ .-.|..+.....+... +.. T Consensus 236 G~y~v~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IPfv~~~-~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~i-l~~ 313 (535) T protein:vir:80 236 GNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIG-PLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFV 313 (535) T ss_pred ceEEEEEEEeecCCccccccceeecccCCCcccCeeEEEEee-cCCCCCCCCccchHHHHHHHHHHhhchhHHHHH-HHH Confidence 00 000000011111 112222 2233445678887553 3445555555554443 445 Q ss_pred cCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhh Q lcl|Aclame:pro 218 GGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYK 297 (454) Q Consensus 218 g~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~ 297 (454) .+.|..+++-.....++. ..+ -....-|.+ ..+.++.|.++.-+..++.-+. .+..+...+++++ .|.- + T Consensus 314 ~~~P~l~i~G~~~~~~~~---~~~-~~~i~iG~~--~~~~lP~~~~~~~~e~~~~~~a-~~~l~~~e~qM~~-lGa~--l 383 (535) T protein:vir:80 314 AGQPTAFFTGLTKDWVED---VFK-DFKVHLGSR--AIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIA-MGAN--L 383 (535) T ss_pred hcCceeeeecCchhhhhc---CCC-CcceEecCc--ccccCCCCCCcceeeeccchhH-HHHHHHHHHHHHH-HHHH--h Confidence 566777765322211110 000 000222332 3566776655544444333222 2223333333332 1111 1 Q ss_pred hcccccccc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----Cc-----ccceeeecchhhhhc-CHHHHHHHHHH Q lcl|Aclame:pro 298 IGVGQPPSS-DNVEALEQQYYSQCLQTLIESIELLLDEALE-----TG-----ENESTEFDVTTLLRM-DSERRMKTLGD 365 (454) Q Consensus 298 lg~~~~~~~-~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l~-----~~-----~~~~~~f~~~~l~~~-d~~~~~~~~~~ 365 (454) +. ....+. ++.......-..+.|.-++..+++.+++.|- .. ....+.++.+-.... |.. .+..+-+ T Consensus 384 l~-~~~~~~Ta~~a~~~~~~~~S~L~~~a~~le~al~~aL~~~A~w~G~~~~~~~~~i~~n~dF~~~~ld~~-~~~all~ 461 (535) T protein:vir:80 384 LV-KSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPN-ERAELIL 461 (535) T ss_pred hc-cCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCceEEEeccccccccCCHH-HHHHHHH Confidence 11 111111 1111112222345566677888888876551 11 122344444433333 443 5666778 Q ss_pred HHhCCCcCHHHHHHHhcCCCC-----CCcccc-ccccccccccccccccccccCCCccCcccCCCCCCcccCcccccc Q lcl|Aclame:pro 366 AVKNTLLTPNEARKRENLPPL-----AGGDAL-YLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAIT 437 (454) Q Consensus 366 ~~~~g~~T~NE~R~~~g~~p~-----~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 437 (454) +++.|.++....++.+..-.+ +..++. .+......+... .....+.+.+.++..+-+.-+..++++.- T Consensus 462 ~~~~G~Is~et~~~~L~r~gvl~~~~~~eee~~ri~~E~~~~~~~----~g~~~d~~~~g~~~~~~~~~~~~~~~~~~ 535 (535) T protein:vir:80 462 EWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAA----AGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) T ss_pred HHhcCCCCHHHHHHHHHhCCCCCcccchHHHHHHHHhhhhhcccc----CCCCCCCCCCCCCcCcccCCccccccCCC Confidence 889999998888776633211 111111 111000000000 00000001111111111111111122211 No 228 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=90.54 E-value=0.02 Score=29.86 Aligned_cols=381 Identities=7% Similarity=-0.041 Sum_probs=157.9 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEeccccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~~ 80 (454) +.+-+......-...... ..+-..+...... .... .......+..-+.+.....+|+..++.+-+.|+.+... ++ T Consensus 9 ~i~~~~~~~~r~~~~~~Y-Y~g~~~i~~~~~~-~~~~-~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p~~~~~~-~~- 83 (451) T protein:vir:10 9 IISADAARRQEILQAKSY-YYNKNDILKKGVV-VQNR-DENPLRNADNRISHNFHEILVDEKASYMFTYPVLFDID-NN- 83 (451) T ss_pred HHHHHHHHHHHHHHHHHH-hcccCcccccccc-cccc-ccccccccccccccchHHHHHHhhhhheecccceeecC-Cc- Confidence 111111000000000000 0000000000000 0000 00000001112235667778888888888888765321 11 Q ss_pred cceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCC-------ceeEEEEecCcceEEEECCC--C Q lcl|Aclame:pro 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARG-------QIKELRILDWNRVEPLVADD--G 151 (454) Q Consensus 81 ~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G-------~~~~l~~l~~~~~~~~~~~~--g 151 (454) +. ....+..++. | +.......+..+.+.+|.||.++.++.+. ....+..++|..+-+..+.. + T Consensus 84 ~~---~~~~~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~~~~~~~i~p~~~~~vydd~~~~ 155 (451) T protein:vir:10 84 KE---LNEKVTDVLG--N---EFTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQTFKYGVVNTEEIIPIYRNGIER 155 (451) T ss_pred HH---HHHHHHHHhc--c---CHHHHHHHHHHHHhhcCeEEEEEeecCCcccccccccceeEEEEcccceEEEEcCCCCC Confidence 10 1112222221 2 34566777888899999999888766541 12346677888887776542 2 Q ss_pred ceeeEE---e-cccccc--cc----ceeEEehhheEEeecCC------------------------CcCcccccchhhhh Q lcl|Aclame:pro 152 EVFYRI---T-PDRNCG--IT----EAVTVPAREVIHDRFNC------------------------FFHPLIGLPPVYAA 197 (454) Q Consensus 152 ~~~~~~---~-~~~~~~--~~----~~~~~~~~~vih~~~~~------------------------~~~~~~G~s~l~~~ 197 (454) ...+.+ . ...... .+ ....+..+.+.+++... -.+...|.|-+..+ T Consensus 156 ~~~~~ir~~~~~~~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~~d~e~v 235 (451) T protein:vir:10 156 ELEAVIRYYIQLEDVKGQIQKQAYTYVEFWTDKILDKYKFFGVSCCGSQIEHITVQHRFNSVPFVEFSNNIKKQSDLSKY 235 (451) T ss_pred ceEEEEEEEEeeecccccccceEEEEEEEEeCCeEEEEEecccCccccccccccccCCCCeeeEEEeccCCCCCCchhhH Confidence 211111 0 000000 00 00012222222221100 00122466767766 Q ss_pred HhHHHHHHHHHHHHHHHHhccCCcceeEec-CccCCHHHHHHHHHHHHHHhcCcccCCceecC-------CCceeeeccc Q lcl|Aclame:pro 198 GLAATQGHHIQENSTSFFRNGGRPSGVIEI-PGSITEENAKKLKSNWDSGYTGENAGKTAILS-------NGAKYNPTTF 269 (454) Q Consensus 198 ~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~-~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~-------~g~~~~~l~~ 269 (454) ...++..+.+.--..+.+...+.|-.++.. ....+.+... .++. .+++.+. ++++|..... T Consensus 236 ~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~----~~~~-------~~~i~~~~~~~~~~~~~~~l~~~~ 304 (451) T protein:vir:10 236 KKILDLYDRVMSGFANDLEDIQQIIYILENFGGEDTSEFLK----ELKR-------YKTIKTETDSEGDSGGLKTMQIEI 304 (451) T ss_pred HHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccchhhHH----HHhh-------CCeEEecCcCCccCCcceEEeecC Confidence 666666665555555555555556555432 1111222222 1111 1222221 3445544333 Q ss_pred cchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cC- Q lcl|Aclame:pro 270 SPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEAL----------ET- 338 (454) Q Consensus 270 ~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~ie~~l~~~l----------~~- 338 (454) ....+.+..+...+.|...-++|..-- . +.+|+......+.-..+.-.+...+..+...| +. T Consensus 305 --~~~~~~~~~~~l~~~I~~~s~~p~~~~--~---~~gn~Sg~Alk~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~ 377 (451) T protein:vir:10 305 --PTEARKIILEILKKQIYESGQGLQQDT--E---NFGNASGVALKFFYRKLELKSGLLETEFRTSFDKLIKAILYFLGV 377 (451) T ss_pred --CHHHHHHHHHHHHHHHHHHhCcccccc--c---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Confidence 344566778888999999999985311 1 11222222222222222222222222221111 11 Q ss_pred cccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccccccccccccccccccccccCCCccC Q lcl|Aclame:pro 339 GENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSG 418 (454) Q Consensus 339 ~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (454) .....+.+.|..-+..|..+.++.+.++. |+++..-+.++++.-..+ +... ..+. .. ..+....... T Consensus 378 ~d~~~i~i~f~~~~p~n~~e~~~~~~kl~--g~iS~et~~~~~p~v~d~--~~e~-----~~~~---ee-~~~~~~~~~~ 444 (451) T protein:vir:10 378 TDYKKIQQTYTRNMMSNDLEDADIATKSV--GIIPTKIILRHHPWVDDV--EEAE-----KLYL---EE-KKIQASKVSD 444 (451) T ss_pred CCccceeEEecCCCCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCH--HHHH-----HHHH---HH-HHHHHHHHHh Confidence 12335566777778889999999999985 788877777776553211 1100 0000 00 0000000000 Q ss_pred cccCCCCCCccc Q lcl|Aclame:pro 419 KTASVPQAVAAS 430 (454) Q Consensus 419 ~~~~~~~~~~~~ 430 (454) . -++-.+ T Consensus 445 ~-----~~~~~~ 451 (451) T protein:vir:10 445 D-----YNNFTE 451 (451) T ss_pred h-----cCCCCC Confidence 0 000000 No 229 >protein:vir:102668 Length: 547 # NCBI annotation: Hypothetical protein # Family: family:all:481 # MgeID: mge:1624 # MgeName: VP2 # Cross-refs: genbank:acc:YP_024419;genbank:gi:48696640;genbank:GeneID:2948135 Probab=89.72 E-value=0.025 Score=29.39 Aligned_cols=378 Identities=11% Similarity=0.001 Sum_probs=150.2 Q ss_pred Ccchhhhh--------ccc-cccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhc--cc Q lcl|Aclame:pro 1 MWNLLRRT--------RKN-QKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIA--KM 69 (454) Q Consensus 1 m~n~f~r~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va--~~ 69 (454) +|.=.... ... ....... ..-...+++..+ - -.+....+.+...+. +- T Consensus 23 ~w~e~~~~~lP~~~~~~~~~~~~~~~~-~~~~~~i~dst~---------------~-----~a~~~Las~L~~~ltPp~~ 81 (547) T protein:vir:10 23 IWDCIRKYIMPMRSDFFSDLRSEGSIN-WNQNREVFDSTA---------------G-----DGLETLSSSLHGSLTSPAT 81 (547) T ss_pred HHHHHHHHhcccccccccCCCCCcccc-cccccccccchH---------------H-----HHHHHHHHHHHHhhcCCCC Confidence 11111100 000 0000000 000000111110 0 112233333333332 22 Q ss_pred ce-EEEeccccccce-------ehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC-CceeEEEEecC Q lcl|Aclame:pro 70 RL-RLMQTDAQGIRR-------ETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR-GQIKELRILDW 140 (454) Q Consensus 70 ~~-~~~~~~~~~~~~-------~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~-G~~~~l~~l~~ 140 (454) || ++-..+.+.... ..-...+...+.+-| ++.-+..++.++..+|++.+++..+.+ +....+..++. T Consensus 82 ~WF~l~~~d~~~~~~~~v~~~L~~ve~~i~~~l~~sn----f~~~~~~~~~~L~~~G~a~l~~~~d~~~~~~~r~~~~pl 157 (547) T protein:vir:10 82 KWFELAFRDKELNSDDECRKWLENATHDVYSALQDSN----FNLEANETYIDLCGYGNAIMVEEEDEDEEGSVVFQSSPI 157 (547) T ss_pred cccccccCCccccchHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhHCcEeEEeccCCCCCCceeEEEeec Confidence 33 111111110000 001122223334433 444466778899999999998865532 23445666677 Q ss_pred cceEEEECCCCceeeEEe-------------------------------------------cccccccc----------- Q lcl|Aclame:pro 141 NRVEPLVADDGEVFYRIT-------------------------------------------PDRNCGIT----------- 166 (454) Q Consensus 141 ~~~~~~~~~~g~~~~~~~-------------------------------------------~~~~~~~~----------- 166 (454) .++.+..+..|.+--.|. ........ T Consensus 158 ~~~~v~~d~~G~v~~i~r~~~~t~~qi~~~fg~~~l~~~v~~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~ 237 (547) T protein:vir:10 158 QDSYFEEDSRGQVVNFYRVFRWTPAQIYDRFGDEGTPEAIIKKAKEASNQAALKQEVVMCVFTRYDKKQNRNAGTVLAPT 237 (547) T ss_pred ceEEEeeCCCcCeeeeeeeeeccHHHHHHhcCcccCCHHHHHHHhcCCCcccceEEEEEEEeeccCCCCCccccceeecc Confidence 777777776664311110 00000000 Q ss_pred ----ceeEE--------------ehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecC Q lcl|Aclame:pro 167 ----EAVTV--------------PAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIP 228 (454) Q Consensus 167 ----~~~~~--------------~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~ 228 (454) ..+.+ ..-..+..|.....+..||.||...+...+.......+.......-...|.+.+.- T Consensus 238 ~~p~~s~~~e~~~~~~~l~esg~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp~~v~~- 316 (547) T protein:vir:10 238 ERPFGKKWILKEGAVQLGEEGGYYEMPAYAIRWRKSAGSQWGFGPSHLALPDVLTANRYVELVLRSSEKVIDPAIMVTE- 316 (547) T ss_pred ccceeEEEEEecCceeeeecCCcccCCeeeeeeeecCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccc- Confidence 00111 11124555656666778999999999999999999999988888888888865432 Q ss_pred ccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHH-HHHHHHHHHHHHHHhccchhhhccccccccc Q lcl|Aclame:pro 229 GSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQT-VEQLKMTAEIVCSVFRVPAYKIGVGQPPSSD 307 (454) Q Consensus 229 ~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~-~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~ 307 (454) .+.... ++ .. .|++.+.++.-.++|+...+ +.+. .+..+.....|-.+|-+....+-..+. - T Consensus 317 ~g~~~~--------~~-~~----pgg~~~~~~~~~v~pl~~~~-~~~~~~~~i~~~~~rI~~af~~d~~~~~~~~~---~ 379 (547) T protein:vir:10 317 RGLISD--------ID-LG----ASGLTVVRDMESMKPFESRA-RFDVSSIQLTDLRSAVRRIYYVDQLQMKDSPA---M 379 (547) T ss_pred cccccc--------ce-ec----CCeeeecCCcccceeeeccc-chHHHHHHHHHHHHHHHHHhhhhhhhcCCCcc---c Confidence 222211 11 11 24455666666777776554 3433 466788889999999776654433332 2 Q ss_pred CHHHHHH--HHHHHHHHHHHHHHHHHH------------HHh-hcCcc--------cceeeecchhhhhcCHHH-HHHHH Q lcl|Aclame:pro 308 NVEALEQ--QYYSQCLQTLIESIELLL------------DEA-LETGE--------NESTEFDVTTLLRMDSER-RMKTL 363 (454) Q Consensus 308 n~e~~~~--~~~~~~i~P~~~~ie~~l------------~~~-l~~~~--------~~~~~f~~~~l~~~d~~~-~~~~~ 363 (454) |+++.+. .-....+.|....+..+| .+. ++++. +..+.+.+-+.+..-.+. .+..+ T Consensus 380 TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~l~~~~~~~~~v~~is~Laraq~~~~~~~i 459 (547) T protein:vir:10 380 TATEVQVRYELMQRLLGPTLGRLENDFLSPMIQRTFNIRFRAGKLGELPSKLLESGKAAMDIVYTGPLSRAQKIDQAASI 459 (547) T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccCcceEEEEeccHHHHHHHHHHHHHH Confidence 3333222 223334445554444433 221 22221 112333333322211110 11111 Q ss_pred HHHHh-------CC-----CcCHHHH----HHHhcCCCCCCccccccccccccccccccc--cccccCCCccCcccCCCC Q lcl|Aclame:pro 364 GDAVK-------NT-----LLTPNEA----RKRENLPPLAGGDALYLQQQNYSLEALSRR--DAREDPFASSGKTASVPQ 425 (454) Q Consensus 364 ~~~~~-------~g-----~~T~NE~----R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 425 (454) ...++ .+ .+..+++ -+.+|.|+. .+.-+..... ...+...+. T Consensus 460 ~~~~~~v~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~-----------~irs~eev~~~r~qr~~~~q~--------- 519 (547) T protein:vir:10 460 ERWAGSTAQLAEINPEVLDIPDWDEMVRMLGSLLGAPQT-----------LMRPKAKVTSIRKNRSQTQQK--------- 519 (547) T ss_pred HHHHHHHHHhhccChhhhhcCCHHHHHHHHHHHhCCChh-----------ccCCHHHHHHHHHHHHHHHHH--------- Confidence 11111 00 0222222 122333320 0000000000 000000000 Q ss_pred CCcccCcccccccccccHHHHHHHHHhcC Q lcl|Aclame:pro 426 AVAASDGNKAITETEHDAVKAMFRGILKK 454 (454) Q Consensus 426 ~~~~~d~~~~~~~~~~~~~~a~~~~~~~~ 454 (454) .++-+..++..+.++. T Consensus 520 -------------~~qaa~~~~~g~~m~~ 535 (547) T protein:vir:10 520 -------------AEQAAIAEAEGNAMEA 535 (547) T ss_pred -------------HHHHHHHHHHHHHHHh Confidence 0000000001111111 No 230 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=89.72 E-value=0.025 Score=29.39 Aligned_cols=404 Identities=13% Similarity=0.100 Sum_probs=164.3 Q ss_pred Ccchh------hhhcccc---------ccccccCcccc---hhhhh-h-----hhhhcccccc--CC-cc------ccHH Q lcl|Aclame:pro 1 MWNLL------RRTRKNQ---------KSGRDVREAGW---TSLFQ-A-----VAEPFAGAWQ--QG-VK------ADPE 47 (454) Q Consensus 1 m~n~f------~r~~~~~---------~~~~~~~~~~~---~~~~~-~-----~~~~~~~~~~--~~-~~------~~~~ 47 (454) |+++| +.+.+.. ..+.++.++.. ..... + .+.+....+. .+ .. -.-+ T Consensus 3 ~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~y~~~e~~~~~~~eLI~~YR 82 (524) T protein:vir:98 3 FLGFGNVLSFFKNFAREDEIELEQQLKNDTGSVAPPKNNDGAYEIETDLNNQKYAGVFQQFYSGQDPAIQNKEQLINTYR 82 (524) T ss_pred CcchhhHHHHhhhhhhhhhhhHhhhhcCCcccccCCCCCCCceeecCCCCcceecceeeeeccccccccchHHHHHHHHH Confidence 43333 2221110 11111111111 00000 0 0101001000 00 00 0124 Q ss_pred HHHhhHHHHHHHHHHHHhhccc-----ceEEEeccccccce-ehhhh---HHHHhhhhccccCCHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 48 AVLSFHAVFACISLISQDIAKM-----RLRLMQTDAQGIRR-ETRRG---DIARLCRRPNAQQNRIQFFELWLNAKLRHG 118 (454) Q Consensus 48 ~~~~~~~v~~~i~~ia~~va~~-----~~~~~~~~~~~~~~-~~~~~---~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G 118 (454) ..+.+|.|..||+-|.+.+.-+ |..+.- ++.... ..+.. ....+++--+.... -..++..|.+.| T Consensus 83 ~ma~~pEvd~Av~eIVneaIv~~~~~~pV~l~L--~~~~~s~~iK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDg 156 (524) T protein:vir:98 83 GIMSYPEVENAVSEIIDDAIVNEQGKDIITMDL--AKTNFSKAIQDKIVEEFDNVLNIYDFDNM----GARLFRDWYVDS 156 (524) T ss_pred HHhhccchhhHHHhhhcceeEecCCCceEEEEe--cccccchHHHHHHHHHHHHHHHHhccchh----hhHHHhhhhhcc Confidence 4567899999999988776432 222211 011100 11111 11112222222233 345566688899 Q ss_pred CeEEEEeeCCCCc--eeEEEEecCcceEEEEC------CCCc-------eeeEEecccc--c------cccceeEEehhh Q lcl|Aclame:pro 119 NTVVLKIRNARGQ--IKELRILDWNRVEPLVA------DDGE-------VFYRITPDRN--C------GITEAVTVPARE 175 (454) Q Consensus 119 ~~~i~~~r~~~G~--~~~l~~l~~~~~~~~~~------~~g~-------~~~~~~~~~~--~------~~~~~~~~~~~~ 175 (454) ..|..++-+.+.. ..+|..|+|-.++.++. ..|. .+|.|..... . ..+..+.++.+. T Consensus 157 Ri~fhkiid~~~~kGI~ELr~lDPr~i~~vr~~~~~~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~~dA 236 (524) T protein:vir:98 157 RIYFHKIMHKDESKGIRELRQLDPRCMELIRESITETLDGGVKVFRGYREFFVYSAPKAGYTYNGQIYQANQKIKIPRSA 236 (524) T ss_pred eeEEEEEEcCCCCcceeeeeeeCCccceeeeeccccccccchhhccceeeeeeeccCCCccccccceecCCCceeechhh Confidence 9999988655433 88999999999976641 1121 1122211000 0 112346788888 Q ss_pred eEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCcc-CCHHHHHHHHHHHHHHhc------ Q lcl|Aclame:pro 176 VIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGS-ITEENAKKLKSNWDSGYT------ 248 (454) Q Consensus 176 vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~-~s~e~~~~~~~~~~~~~~------ 248 (454) |.|.-.+.......-+|-|..+...+....-++...-=+--..+.-+-|+-++-+ +-...+++....+...+. T Consensus 237 Ivy~hSGL~d~~~~iisyLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYD 316 (524) T protein:vir:98 237 IVYAHSGLEDCSNNIIGYLHRAVKPANQLRLLEDAMVIYRITRAPERRVFYIDVGQMGGNKATQYVNNIAQGLKNRVVYD 316 (524) T ss_pred eeeeccCcccCCCCeeeehhHhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEee Confidence 8876543221111124556666665555554554444443344444555555533 223334444333333322 Q ss_pred ---C--cccCCc-ee-----cC-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccc-cc--ccC- Q lcl|Aclame:pro 249 ---G--ENAGKT-AI-----LS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP-PS--SDN- 308 (454) Q Consensus 249 ---g--~n~g~~-~v-----l~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~-~~--~~n- 308 (454) | .+..+. .. |+ .|.+++.|.-... +.-++-..+..+.+.++++||.+-++..++ -+ .++ T Consensus 317 a~TGevrddrk~msMlEDyWLpRReGgrgTEItTLpggqn-lgem~DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~E 395 (524) T protein:vir:98 317 ARTGTVKNQQNNLSMTEDYWLMRRDGKAITEVSTLPGGQN-FSDMDDIKWFNRKLYEALRVPLSRMPRDDGGMQIGGGGE 395 (524) T ss_pred ccCceeeccccccchhhhhcccccCCCCccceeeccccCC-cChHHHHHHHHHHHHHHhCCCceeccCCCCccccccccc Confidence 2 111122 12 22 3667777654322 233455678888999999999999974332 12 222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------ccc-----ceeeec--chhhh----h-cCHHHHHHHHHHHH Q lcl|Aclame:pro 309 VEALEQQYYSQCLQTLIESIELLLDEALET---------GEN-----ESTEFD--VTTLL----R-MDSERRMKTLGDAV 367 (454) Q Consensus 309 ~e~~~~~~~~~~i~P~~~~ie~~l~~~l~~---------~~~-----~~~~f~--~~~l~----~-~d~~~~~~~~~~~~ 367 (454) +.-....|.+ .|.-+..++...|...|-+ +.. ..+.|+ .|.-. . .-...+++.+..+- T Consensus 396 ItRDEiKF~K-FI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~d 474 (524) T protein:vir:98 396 ITRDELKFSK-FIRTLQIQFSPVLSDPLKTNLIAKKIITEDEWEENVSKISFVFQQDSYYAEVKDIEILERRLNLMSQVE 474 (524) T ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhc Confidence 2222233333 3455556665555543321 111 123333 33211 0 11122333333332 Q ss_pred h-CC-CcCHHHHHH-HhcCCCC--CCccccccccccccccccccccccccCCCccCcccCCCCCCcccCc Q lcl|Aclame:pro 368 K-NT-LLTPNEARK-RENLPPL--AGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDG 432 (454) Q Consensus 368 ~-~g-~~T~NE~R~-~~g~~p~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 432 (454) . .| .++.+=+++ .|.+.-. ...+... . +....+.-+. ...+.+|- T Consensus 475 pyvGky~s~dyi~k~ILr~tDeei~~~~k~I--------~--------~E~k~~~~~~----p~~e~~~f 524 (524) T protein:vir:98 475 GVVGKYVSHKYIMKEILRMSDEDIDEQAKLI--------E--------EESKEERFKN----PEAEEENF 524 (524) T ss_pred cccccccchHHHHHHHhccCHHHHHHHHHHH--------H--------HHHhCCCCcC----CccccccC Confidence 2 22 334433432 3333211 0000000 0 0000000000 00000111 No 231 >protein:vir:106282 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944108;genbank:gi:38640152;genbank:GeneID:2658030 Probab=89.24 E-value=0.027 Score=29.14 Aligned_cols=405 Identities=12% Similarity=0.090 Sum_probs=176.1 Q ss_pred Ccchhhhhccccc---------ccccc--Ccccchh--hhhhhhhh--cccccc-----CCc----c---ccHHHHHhhH Q lcl|Aclame:pro 1 MWNLLRRTRKNQK---------SGRDV--REAGWTS--LFQAVAEP--FAGAWQ-----QGV----K---ADPEAVLSFH 53 (454) Q Consensus 1 m~n~f~r~~~~~~---------~~~~~--~~~~~~~--~~~~~~~~--~~~~~~-----~~~----~---~~~~~~~~~~ 53 (454) |+.+|+.+.+... .+.+. +....+. +......+ .++... .+. . -.-+..+.+| T Consensus 5 ~l~lf~f~~k~~e~~~~~~~~~~~~s~~~p~~~dGa~~I~~~~~~~~~~~~~~~~~~~~~~~~~n~~eLI~~YR~ma~~p 84 (521) T protein:vir:10 5 FLKLLQPWMKDDEKRVQSDLSDRIDSFAVPDTADGAIEVDKQIDTTAPKTAIVQSVLGYAPKIQNTKDLINQYRSLSKYH 84 (521) T ss_pred hhHHhhhhhhhhhhHHhhhhccCccccccccCCCCceeeccCCCccccccchhhhhhccccccchHHHHHHHHHHHhhcc Confidence 7777766543221 11111 1111111 00000000 000000 000 0 0124556799 Q ss_pred HHHHHHHHHHHhhcccc-----eEEEeccccccceehhhh---HHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEe Q lcl|Aclame:pro 54 AVFACISLISQDIAKMR-----LRLMQTDAQGIRRETRRG---DIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKI 125 (454) Q Consensus 54 ~v~~~i~~ia~~va~~~-----~~~~~~~~~~~~~~~~~~---~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~ 125 (454) .|..||+-|.+.+.-+. ..+.-.+-+.. ...+.. ....+++--+.... -..++..|.+.|..|..++ T Consensus 85 Evd~Av~eIvneaiv~d~~~~pV~i~Ld~~~~s-~~iK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi~fHki 159 (521) T protein:vir:10 85 EVDNAIDEIINDAIVQEDNRDTVYLDLDKTDWN-ESVKEMVREEFRTILKLLKFERE----GKRHFRRWYVDSRIYFHKM 159 (521) T ss_pred chhhHHHhhhcceEEecCCCceEEEEecCcccc-hHHHHHHHHHHHHHHHHhccchh----hhHHHhhheeeeeEEEEEE Confidence 99999999988775432 22221111110 011111 11112222222333 3455666888999998876 Q ss_pred eCC---CCceeEEEEecCcceEEEECC-----CCc-------eeeEEec------cccccccceeEEehhheEEeecC-C Q lcl|Aclame:pro 126 RNA---RGQIKELRILDWNRVEPLVAD-----DGE-------VFYRITP------DRNCGITEAVTVPAREVIHDRFN-C 183 (454) Q Consensus 126 r~~---~G~~~~l~~l~~~~~~~~~~~-----~g~-------~~~~~~~------~~~~~~~~~~~~~~~~vih~~~~-~ 183 (454) -+. ..-..+|..|+|-.++..+.. .|. .+|.|.. ......+..+.++.+-|.|.-.+ - T Consensus 160 id~~~pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~~g~~~~~vkI~~daI~y~hSGL~ 239 (521) T protein:vir:10 160 IDPARPKDGIKELRLLDPRNVEYYRVNLKSNENGNDVYKGVKEFFTYGATEDNRYNISGNSNNLVQIPIDAIVYSHSGKV 239 (521) T ss_pred eeCCCccccceeeeeeCCcceeeeeeecCCCCCcchhhccceeeeeeccCCCceecCCCCCCcceeechhheeeecccce Confidence 542 234889999999999755321 111 1122211 11112233456776544443322 2 Q ss_pred CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccC-CHHHHHHH----HHHHHHHh-----cC--cc Q lcl|Aclame:pro 184 FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI-TEENAKKL----KSNWDSGY-----TG--EN 251 (454) Q Consensus 184 ~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~-s~e~~~~~----~~~~~~~~-----~g--~n 251 (454) +.++.+.+|-|..+...+....-++...-=+--..+.-+-|+-++-+. -...+++. ..++++.+ .| .+ T Consensus 240 d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~~iM~k~kNklVYDa~TGev~d 319 (521) T protein:vir:10 240 DIDGKTIVGYLHNVIKPANQLKMLEDAMVIYRITRAPERRVFYIDVGTMPNKKATQHLNNVMQGLKNRVVYDSSTGKVKN 319 (521) T ss_pred eCCCCceeccchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceecc Confidence 335567888888888887776666666555544455555566565332 22233333 33333322 12 11 Q ss_pred cCCce-e-----cC-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccc-cc--ccC-HHHHHHHH Q lcl|Aclame:pro 252 AGKTA-I-----LS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP-PS--SDN-VEALEQQY 316 (454) Q Consensus 252 ~g~~~-v-----l~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~-~~--~~n-~e~~~~~~ 316 (454) ..+.+ . |+ .|.+++.|.-... +.-++-..+..+.+.++++||.+-|+...+ -+ .++ +.-....| T Consensus 320 drk~msMlEDyWLpRReGgrgTEI~TLpggqn-lgem~DV~YF~kkLy~aLnVP~sRl~~e~~~f~~Gr~~EItRDEikF 398 (521) T protein:vir:10 320 SSNNLAMTEDYWLMRRDGKATTEVSTLPGAQS-MGEMDDVRWFNRKLYESMKIPLSRLPQEGAGVTFGAGNDITRDELQF 398 (521) T ss_pred chhhhhhHhhhcccccCCCCccceeeccccCC-cChHHHHHHHHHHHHHHhCCCccccCCCCCceecccccchhHHHHHH Confidence 11221 2 22 3567777654322 333455678888999999999999875432 12 222 22223333 Q ss_pred HHHHHHHHHHHHHHHHHHhhcC---------ccc-----ceeeec--chhh----h-hcCHHHHHHHHHHHHh---CC-C Q lcl|Aclame:pro 317 YSQCLQTLIESIELLLDEALET---------GEN-----ESTEFD--VTTL----L-RMDSERRMKTLGDAVK---NT-L 371 (454) Q Consensus 317 ~~~~i~P~~~~ie~~l~~~l~~---------~~~-----~~~~f~--~~~l----~-~~d~~~~~~~~~~~~~---~g-~ 371 (454) .+ .|.-+..++...|...|-+ +.. ..++|+ .|.- . ..-...+++.+..+-. .| . T Consensus 399 ~K-FI~rLR~rFs~~f~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~eil~~R~~~l~~~dp~~yvGky 477 (521) T protein:vir:10 399 TK-YIRGLQQQFEPIFLNPLRTNLMLKGKMSVSEWEEQAENIKVVFSKDSYYEEIKDVEILERRVNLVQTLASAEVTGKY 477 (521) T ss_pred HH-HHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHhhcCccccccc Confidence 33 3555666666655544421 111 133333 3321 1 1112334555554422 22 4 Q ss_pred cCHHHHHH-HhcCCCC--CCccccccccccccccccccccccccCCCccCcccCCCCCCcccCc Q lcl|Aclame:pro 372 LTPNEARK-RENLPPL--AGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDG 432 (454) Q Consensus 372 ~T~NE~R~-~~g~~p~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 432 (454) ++.+=+++ .|.+.-. ...++.. ....+ .+.-+ +...+.+|- T Consensus 478 ~s~dyi~k~ILr~tDeeik~~~k~I--------~~E~~--------~~~~~----~p~~e~~df 521 (521) T protein:vir:10 478 LSHEYVMKNILRMSDEDIKTEREKI--------DGELK--------DSVYK----NPEDPMEEF 521 (521) T ss_pred cchHHHHHHHhcCCHhHHHHHHHHH--------HHhhh--------CCCCC----CCcchhhcC Confidence 44444543 4444311 0000000 00000 00000 000111111 No 232 >protein:vir:106999 Length: 564 # NCBI annotation: portal vertex protein gp20 # Family: family:all:1036 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195138;genbank:gi:58532915;interpro:IPR010823;uniprot:Q5GQN4;genbank:GeneID:3260496 Probab=89.17 E-value=0.028 Score=29.11 Aligned_cols=428 Identities=14% Similarity=0.124 Sum_probs=172.1 Q ss_pred Ccchhhhhcccccc--ccccCcccchhhhhhhhhhccccccC--C--ccc-------cHHHHHhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKS--GRDVREAGWTSLFQAVAEPFAGAWQQ--G--VKA-------DPEAVLSFHAVFACISLISQDIA 67 (454) Q Consensus 1 m~n~f~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~-------~~~~~~~~~~v~~~i~~ia~~va 67 (454) |.-+|..+...... +.+..+.............+.+.... + ... .-+..+.+|.|..||+-|.+.+. T Consensus 1 m~~lfgf~i~~~~~~~~~S~vpp~~~~~~~~i~~g~~g~~v~~~g~~~~~n~~eLI~~YR~ma~~pEVd~Av~eIVneaI 80 (564) T protein:vir:10 1 MSQLFGFLINEKEGQKGQSPVPPNDEASVSTVAGGYFGTYVDTSGGQNSRNEYELIRRYRDMSLHPEVDSAIDEIVNEFV 80 (564) T ss_pred CcchhcceeeeeccCCCCCcccCCcCCChhhhhccccceeeecccccchhhHHHHHHHHHHHhhccchhhHHHHhhccee Confidence 88887655433211 11221111111122222222111110 1 000 12445678999999999887754 Q ss_pred cc-----ceEEEeccccccce-ehhhh---HHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC-C--CceeEE Q lcl|Aclame:pro 68 KM-----RLRLMQTDAQGIRR-ETRRG---DIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA-R--GQIKEL 135 (454) Q Consensus 68 ~~-----~~~~~~~~~~~~~~-~~~~~---~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~-~--G~~~~l 135 (454) -+ |..|.- ++.... ..+.. ....+++--+.... -..++..|.+.|..|..++-+. + .-..+| T Consensus 81 v~d~~~~pV~vdL--~~~~~s~siK~kI~eEF~~Il~ll~F~~~----~~e~fR~WYVDgRi~fHkiid~~~pk~GI~eL 154 (564) T protein:vir:10 81 VNDGDDKPVEVDL--QNLEIGSGVKKKIRDEFNRILRMMNFNVN----AHEIIRNWYVDGRSHYHKVIDLDNPKKGILEL 154 (564) T ss_pred EecCCCceEEEEe--cccCcchHHHHHHHHHHHHHHHHhccchh----hhHHHhhhhhcceEEEEEEeeCCChhhhhhhh Confidence 22 222211 111111 11111 11122222222333 3445666888999998876542 2 228899 Q ss_pred EEecCcceEEEEC------CCCce---------------eeEEeccccc-------------cccceeEEehhheEEeec Q lcl|Aclame:pro 136 RILDWNRVEPLVA------DDGEV---------------FYRITPDRNC-------------GITEAVTVPAREVIHDRF 181 (454) Q Consensus 136 ~~l~~~~~~~~~~------~~g~~---------------~~~~~~~~~~-------------~~~~~~~~~~~~vih~~~ 181 (454) ..|+|-.++.++. ..+.. -|+++..... ..+..+.++.+-+.|... T Consensus 155 r~lDPr~i~~vr~i~~~~~~~~~~v~k~~~~~~~y~~~~Eyy~Ynp~~~~g~~~~~~~~~~~~~~~~ikI~~daI~y~hS 234 (564) T protein:vir:10 155 RYIDSLKIRKVRQKLKDVDPNRKEIEKGTALQYDYGDFIEYYIYNPKGFAGNIPMVTGSMDWSNQEGIKIASDAIAQSTS 234 (564) T ss_pred hhhcccceeeeeeeccccccccceeeeeeeeeccccccccceeeccccccCcccccccccccccccceeechhhcceecc Confidence 9999997776541 11111 0111111110 011235666666665543 Q ss_pred CC-CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCcc-CCHHHHHHH----HHHHHHHh-----cCc Q lcl|Aclame:pro 182 NC-FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGS-ITEENAKKL----KSNWDSGY-----TGE 250 (454) Q Consensus 182 ~~-~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~-~s~e~~~~~----~~~~~~~~-----~g~ 250 (454) +. +.++-.-+|-|..++..+....-++...-=+--..+.-+-|+-++-+ +-...+++. ..++++.+ .|. T Consensus 235 GL~d~~~~~i~gyLhkAIKp~NQLkmlEDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGe 314 (564) T protein:vir:10 235 GLMDLNKKMTLSFLHKAIKSLNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKVKAEQYLRDVMSRYRNKLVYDGQTGE 314 (564) T ss_pred cceeCCCCceeccchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCce Confidence 31 12333445666666666665555555544444444444555555533 222233333 33333322 121 Q ss_pred --ccCCce-e-----cC-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccc-cc--ccC-HHHHH Q lcl|Aclame:pro 251 --NAGKTA-I-----LS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP-PS--SDN-VEALE 313 (454) Q Consensus 251 --n~g~~~-v-----l~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~-~~--~~n-~e~~~ 313 (454) +..+.+ . |+ .|.+++.|.-.. .+.-++-..+..+.+.++++||.+-|+.... -+ +++ +.-.. T Consensus 315 vrddrk~msMlEDyWLPRReGgrgTEItTLpGgq-nLgem~DV~YF~kKLY~aLnVP~SRl~~e~~~f~~Gr~~EItRDE 393 (564) T protein:vir:10 315 IRDDKKHMSMLEDFWLPRREGGRGTEITTLPGGQ-NLGELKDVEYFKKKLYNSLNLPPSRLTDDNKAFNLGKSTEILRDE 393 (564) T ss_pred ecccchhhhhHhhhcccccCCCcccceeeccccC-CcchHHHHHHHHHHHHHHhCCCcccccCCCceeecccccchhHHH Confidence 111111 2 22 366777765432 2223445678888999999999999976432 22 222 22222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC---------ccc-----ceeeec--chhh----hh-cCHHHHHHHHHHHHh-CC- Q lcl|Aclame:pro 314 QQYYSQCLQTLIESIELLLDEALET---------GEN-----ESTEFD--VTTL----LR-MDSERRMKTLGDAVK-NT- 370 (454) Q Consensus 314 ~~~~~~~i~P~~~~ie~~l~~~l~~---------~~~-----~~~~f~--~~~l----~~-~d~~~~~~~~~~~~~-~g- 370 (454) ..|.+ .|.-+..++...|...|-+ ... ..++|+ .|.- .. .-...+++.+..+-. .| T Consensus 394 iKF~K-FI~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGk 472 (564) T protein:vir:10 394 LKFTK-FIGRLRKRFAQLFHDILKTQLILKGIITPEDWDDMEEHIQYDFLFDNHFNELKEQEMQLQRVNLATQMDPFVGK 472 (564) T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcc Confidence 33333 4555666666655544421 111 123333 3321 10 111223333332210 01 Q ss_pred C------------cCHHHHHHH-------h--cC--CCC--CCcccccc-ccccccccccccccccccCCCccCcccCCC Q lcl|Aclame:pro 371 L------------LTPNEARKR-------E--NL--PPL--AGGDALYL-QQQNYSLEALSRRDAREDPFASSGKTASVP 424 (454) Q Consensus 371 ~------------~T~NE~R~~-------~--g~--~p~--~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (454) . +|-+|+-++ . |+ +|. +.+|..-+ +....|.+.....+.+..+.. .....++ T Consensus 473 y~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~P~e~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~a~ 550 (564) T protein:vir:10 473 YFSTEYIRRKILMQTENEFKEIDKQMKSDIESGLAIDPIQVNMLDDMEKQNQAFAPELQAAQDDLAAEREI--KKLNSAP 550 (564) T ss_pred ccchHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCchhhhcCCCccCCCCcCCcchhhhccccccccCh--hhhccCC Confidence 1 232332211 1 11 121 11211111 111222221111111111111 1111112 Q ss_pred CCCcccCccccccc Q lcl|Aclame:pro 425 QAVAASDGNKAITE 438 (454) Q Consensus 425 ~~~~~~d~~~~~~~ 438 (454) .+++..++.+.... T Consensus 551 ~~~~~~~~~~~~~~ 564 (564) T protein:vir:10 551 KPPPSQQSKSQSNK 564 (564) T ss_pred CCCCCCCCcCcCCC Confidence 22222222111111 No 233 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=88.57 E-value=0.032 Score=28.81 Aligned_cols=407 Identities=9% Similarity=-0.005 Sum_probs=158.0 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhccc-----ceEEEe Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKM-----RLRLMQ 75 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~-----~~~~~~ 75 (454) .|+-|+..+.. -..-|.....+...-................. +++-..|++.+|..+.+. ||-=.. T Consensus 15 r~~~l~~~R~~-------~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~-dst~~~a~~~Las~l~~~ltP~~~WFrl~ 86 (522) T protein:vir:94 15 VYDRLKNGRQP-------YETRAQNCAAVTIPSLFPKESDNSSTEYTTPW-QAVGARCLNNLAAKLMLALFPQSPWMRLT 86 (522) T ss_pred HHHHHHHHhhH-------HHHHHHHHHHHhcccccCCCCCcccccccccc-cccHHHHHHHHHHHHHhhcCCCCcccccc Confidence 33333221110 01112222221111000000000000000111 333345666655554322 331111 Q ss_pred cccccc----ceehhhhHHHHhhhh-------ccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceE Q lcl|Aclame:pro 76 TDAQGI----RRETRRGDIARLCRR-------PNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVE 144 (454) Q Consensus 76 ~~~~~~----~~~~~~~~~~~l~~~-------pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~ 144 (454) ..+.+. ...........++.. --..-+++.-+..++.++..+|++++++..+..|.+..+..+|-..+. T Consensus 87 ~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~~~~~~pl~~y~ 166 (522) T protein:vir:94 87 VSEYEAKTLSQDSEAAARVDEGLAMVERVLMAYMETNSFRVPLFEALKQLIVSGNCLLYIPEPEQGTYSPMRMYRLVSYV 166 (522) T ss_pred cchhhhhccCcccchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeEeeeccCCCceeeEEEEEcceEE Confidence 110000 000001111111111 111224455567778889999999999877766665555445555566 Q ss_pred EEECCCCceeeEE----------------------------------ecccccc-------ccce-------eEEehhhe Q lcl|Aclame:pro 145 PLVADDGEVFYRI----------------------------------TPDRNCG-------ITEA-------VTVPAREV 176 (454) Q Consensus 145 ~~~~~~g~~~~~~----------------------------------~~~~~~~-------~~~~-------~~~~~~~v 176 (454) +..|..|.+--.| ....... .+.. ..+..... T Consensus 167 v~~d~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~P~ 246 (522) T protein:vir:94 167 VQRDAFGNILQIVTIDKVAFSALPEDVKSQLNADDYEPDTELEVYTHIYRQDDEYLRYEEVEGIEVTGTDGSYPLTACPY 246 (522) T ss_pred EeeCCCcCeEEEeeeeeccHHhcchHHHHHHhcccCCccceEEEEEEEEeeCCceeEEeeccCceecccCCCCccccCCc Confidence 6666655321100 0000000 0000 11222345 Q ss_pred EEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCce Q lcl|Aclame:pro 177 IHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTA 256 (454) Q Consensus 177 ih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~ 256 (454) +..|.....+..||.||.+.+...+.......+.......-...|.+.+.-+........ ..+.+ +.+ T Consensus 247 ~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~~v~~~g~~~~~~~----------~~~~~--g~~ 314 (522) T protein:vir:94 247 IPVRMVRLDGEDYGRSYCEEYLGDLNSLETITEAITKMAKVASKVVGLVNPNGITQPRRL----------NKAAT--GEF 314 (522) T ss_pred eeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecccccccchhe----------eccCC--cee Confidence 566666677789999999999999999999999999999999888876543332222111 11111 112 Q ss_pred ec--CCCceeeeccccchhhH-HHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH--HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 257 IL--SNGAKYNPTTFSPVDSQ-TVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ--QYYSQCLQTLIESIELL 331 (454) Q Consensus 257 vl--~~g~~~~~l~~~~~d~~-~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~--~~~~~~i~P~~~~ie~~ 331 (454) +- ++++...++... .+.+ ..+..+.....|..+|-+.. ++..+.. .-|+++.+. .-....+.|....+..+ T Consensus 315 v~g~~~~v~~~~~~~~-~~~~~~~~~i~~~~~rI~~af~~~~--~~~~~~~-r~TAtEV~~r~~E~~~~LG~v~~rl~~E 390 (522) T protein:vir:94 315 VAGRVEDINFLQLTKG-QDFTIAKSVADAIEQRLGWAFLLNS--AVQRNAE-RVTAEEIRYVAGELEATLGGVYSVQSQE 390 (522) T ss_pred ecCCcccceeeecccc-cchhHHHHHHHHHHHHHHHHHhhhh--hccCCCc-cccHHHHHHHHHHHHHHHhHHHHHHHHH Confidence 22 234455555433 2333 35566888888999996652 2222222 223333322 22334455555555544 Q ss_pred HHH-------------hhcCcc-cceeeecchhhhh-----cCHHHHHHHHHHHHhCC------CcCHH----HHHHHhc Q lcl|Aclame:pro 332 LDE-------------ALETGE-NESTEFDVTTLLR-----MDSERRMKTLGDAVKNT------LLTPN----EARKREN 382 (454) Q Consensus 332 l~~-------------~l~~~~-~~~~~f~~~~l~~-----~d~~~~~~~~~~~~~~g------~~T~N----E~R~~~g 382 (454) |-. .++++. ...++.++...+. .+.......+..+-+.+ -+..+ ++.+.+| T Consensus 391 ~l~Pli~r~~~il~r~g~lP~~p~~~v~v~~~s~La~~qr~~~~~~l~~~~~~ia~l~P~~~~~~id~d~~~~~~a~~~G 470 (522) T protein:vir:94 391 LQLPIVRVLMNQLQSAGMIPDLPKEAVEPTVSTGLEALGRGQDLEKLTQAVNMMTGLQPLSQDPDINLPTLKLRLLNALG 470 (522) T ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccEEeeEecHHHHHHHHHHHHHHHHHHHHHHhccchhhhhcCCHHHHHHHHHHHcC Confidence 432 122221 1223444443322 12222222222221111 01122 2233445 Q ss_pred CCCC---CCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccccccccccHHHH Q lcl|Aclame:pro 383 LPPL---AGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDAVKA 446 (454) Q Consensus 383 ~~p~---~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a 446 (454) .+|. -..++. .............+....... +......+.+...+.. .| T Consensus 471 v~~~~ivr~~ee~---------~~~~~q~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~----~~ 522 (522) T protein:vir:94 471 IDTAGLLLTQDEK---------IQRMAEQSSQQAVVQGASAAG--ANMGAAVGQGAGEDMA----QA 522 (522) T ss_pred CChhhccCCHHHH---------HHHHHHHHHHHHHHHHHHHHH--HHhhhhhhcccchhhh----cC Confidence 5331 000000 000000000000000000000 0000000111111100 00 No 234 >protein:vir:94956 Length: 452 # NCBI annotation: putative phage structural protein # Family: family:all:584 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239276;genbank:gi:66392058;genbank:GeneID:5076601 Probab=87.22 E-value=0.04 Score=28.24 Aligned_cols=376 Identities=13% Similarity=0.082 Sum_probs=151.7 Q ss_pred cchhhhhccccccccccCcccchhh---------hhhhhhhccccccCCccccHHHHHh----hHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 2 WNLLRRTRKNQKSGRDVREAGWTSL---------FQAVAEPFAGAWQQGVKADPEAVLS----FHAVFACISLISQDIAK 68 (454) Q Consensus 2 ~n~f~r~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~i~~ia~~va~ 68 (454) +|.-++. .........|.-+ +...+..+......-..-..+.++. .+++...++.++..+.+ T Consensus 1 m~V~~~h-----p~y~a~~~~W~~~rd~~~G~~~~r~~g~~YLpk~~~E~~~~Y~~rl~rA~~~n~~~~t~~~~~G~vf~ 75 (452) T protein:vir:94 1 MPIETKH-----PEYLAYENDWIDCRVASLGQREVKKKGVRFLPKLSGQTDDMYNAYKQRALFYSITSKTLSALSGMVLD 75 (452) T ss_pred CCCCCcC-----HHHHHHHHHHHHHHHHhcChHHHHcCCcccCCCCCCCCHHHHHHHHhhccCCchHHHHHHHHhchhhc Confidence 1211000 0000000001000 0000000000000000001122333 35566666666666666 Q ss_pred cceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEecCcceEEEE- Q lcl|Aclame:pro 69 MRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLV- 147 (454) Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~~~~~~~~~- 147 (454) -|..+-. .. .+..++. .....+-.+|.+.++...+.+|.+++.+-....|.--.+..+.|..|--+. T Consensus 76 k~p~~~~----------p~-~l~~~~~-D~~G~~L~~~~~~~~~~~l~~G~~~ilVD~p~~g~rPy~~~~~~~~Ii~W~~ 143 (452) T protein:vir:94 76 QPPVITH----------PD-AMSKYFE-DQSGIQFYEVFTRAVEETLLMGRVGVFIDRPLTGGDPYISVYTTENILNWEE 143 (452) T ss_pred CCceecc----------cH-HHHHHHh-cccCCCHHHHHHHHHHHHHhcCeEEEEEeeccCCCceEEEEechhhhcCccc Confidence 6654410 11 1122222 345678899999999999999999999877665532233444443333221 Q ss_pred CCCCc------------------------eeeEEec----------ccccccc-----ceeE-------EehhheEEeec Q lcl|Aclame:pro 148 ADDGE------------------------VFYRITP----------DRNCGIT-----EAVT-------VPAREVIHDRF 181 (454) Q Consensus 148 ~~~g~------------------------~~~~~~~----------~~~~~~~-----~~~~-------~~~~~vih~~~ 181 (454) +..|. ..|++.. ......+ +... +..-.++.+ . T Consensus 144 ~~~g~l~~v~lre~~~~~d~~d~f~~~~~~~yRvL~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~-~ 222 (452) T protein:vir:94 144 DEDGRLLMVVLREFYTVRDTADRYVQNIRVRYRCLELVDGLLQITVHETQDGKVWELAKTSTIQNVGVTMDYIPFFCI-T 222 (452) T ss_pred cccCCeeEEEEEEEEEEecCCCcccceeEEEEEEEEEeCCeEEEEEEEccCCceeeeccceeecCCCcccceeEEEEE-c Confidence 11110 0111100 0000000 0000 000011111 2 Q ss_pred CCCcCcccccchhhhhH-hHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCC Q lcl|Aclame:pro 182 NCFFHPLIGLPPVYAAG-LAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSN 260 (454) Q Consensus 182 ~~~~~~~~G~s~l~~~~-~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~ 260 (454) ....+...|.||+..++ -.+........+... +...+.|..++.-..+.. ...-|. +.++.+++ T Consensus 223 ~~~~~~~~~~pPLl~LA~ln~~hy~~~sd~~~~-l~~~~~P~l~~~g~~~~~------------~i~iG~--~~~~~lpe 287 (452) T protein:vir:94 223 PSGLSMTPAKPPMIDIVDINYSHYRTSADLEHG-RHFTGLPTPWITGAESQS------------TMHIGS--TKAWVIPE 287 (452) T ss_pred CCCCCCCCCccchHHHHHHHHHHhcchhHHHHH-HHHcccceeEeecCcCCC------------ceEecc--cccccCCC Confidence 23334557888876543 444555555554444 445566776665322111 122233 24567774 Q ss_pred -Cc--eeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHH--HHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 261 -GA--KYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEA--LEQQYYSQCLQTLIESIELLLDEA 335 (454) Q Consensus 261 -g~--~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~--~~~~~~~~~i~P~~~~ie~~l~~~ 335 (454) |. .|.+.+-+.-.+ ..+..+...+++.. .|. .++-..... ..+.++ ....-..+.|.-++..+++.+++. T Consensus 288 ~~~~~~yie~~g~~i~~-~~~~l~~le~~m~~-~Ga--~ll~~~~~~-~~s~ea~~~~~~~~~s~L~~~a~~~e~al~~~ 362 (452) T protein:vir:94 288 VAAKVGFLEFTGQGLQS-LEKALSEKQAQLAS-LSA--RLIDNSTRG-SEATETVKLRYMSETASLKSVTRAVEALLNKA 362 (452) T ss_pred CCCcceEEccCchhHHH-HHHHHHHHHHHHHH-HHH--HhhccCCCc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH Confidence 64 455544433332 12222222222211 111 111111111 112232 223333577777888888888765 Q ss_pred hc-----Ccccc--eeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh---cCCCCCCccccccccccccccccc Q lcl|Aclame:pro 336 LE-----TGENE--STEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRE---NLPPLAGGDALYLQQQNYSLEALS 405 (454) Q Consensus 336 l~-----~~~~~--~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~---g~~p~~~~d~~~~~~~~~~~~~~~ 405 (454) |- .+.+. .+.++.+-+........++.+.+++..|.++....++.+ |....+..+.... +. T Consensus 363 l~~~a~w~g~~~~~~v~~n~dF~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~gvl~~~~e~~~i~-------~E-- 433 (452) T protein:vir:94 363 YSCIMDMESMGGTLNIKLNSAFLDSKLTAAELKAWVEAYLSGGISKEIYIHALKVGKVLPPPGESMGVI-------PD-- 433 (452) T ss_pred HHHHHHHcCCCCceEEEeccccccccCCHHHHHHHHHHHhcCCCcHHHHHHHHHhCCCCCCccCHHHHH-------HH-- Confidence 51 12222 344444433333334566777789999999988888777 4432221111110 00 Q ss_pred cccccccCCCccCcccCCCCCCcccCcccc Q lcl|Aclame:pro 406 RRDAREDPFASSGKTASVPQAVAASDGNKA 435 (454) Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 435 (454) .+.+.. .+.+.+.+++.++ T Consensus 434 ----~~~~~~-------~~~~~~~~~~~~~ 452 (452) T protein:vir:94 434 ----PPAPEP-------SPSNTPPNPSSKA 452 (452) T ss_pred ----hhccCc-------ccCCCCCCCccCC Confidence 000000 0011111111111 No 235 >protein:vir:7017 Length: 515 # NCBI annotation: head portal protein # Family: family:all:481 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853590;genbank:gi:31711672;genbank:GeneID:1481798 Probab=87.20 E-value=0.04 Score=28.23 Aligned_cols=402 Identities=8% Similarity=0.029 Sum_probs=145.8 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhc------ccce-EE Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIA------KMRL-RL 73 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va------~~~~-~~ 73 (454) .|+-++..+.. -..-|.....+....... ...+...+ +... +++-..|++.+|..+. +-|| ++ T Consensus 18 r~~~Lk~~R~~-------~e~~w~e~~~~tlP~~~~-~~~~~~~~-~~~~-dstg~~a~~~LAa~l~~~ltpp~~~WF~l 87 (515) T protein:vir:70 18 LWEKFSKKRSP-------YLDRAKHFAKLTLPYLMN-NKGDNETS-QNGW-QGVGAQATNHLANKLAQVLFPAQRSFFRV 87 (515) T ss_pred HHHHHHHhhhH-------HHHHHHHHHHHhcccccC-CCCCcccc-cccc-cchHHHHHHHHHHHHHHhhcCCCCccccc Confidence 44433322211 000111111111110000 00000000 1111 3334455655555543 2244 22 Q ss_pred Eeccc-----cc--cce-eh------hhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEec Q lcl|Aclame:pro 74 MQTDA-----QG--IRR-ET------RRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILD 139 (454) Q Consensus 74 ~~~~~-----~~--~~~-~~------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~ 139 (454) -..+. ++ ... .. -.+.++..+.+ -+++.=+..++.++..+|++++++- .++. ...|||. T Consensus 88 ~~~d~~~~~l~~~~~~~~~v~~~l~~ve~~~~~~l~~----snf~~~~~~~~~~L~~~G~a~l~~d--~~~~-~~~~pl~ 160 (515) T protein:vir:70 88 DLTAKGEKVLDDRGLKKTQLATIFARVETTAMKALEQ----RQFRPAIVEVFKHLIVAGNCLLYKP--SKGA-MSAVPMH 160 (515) T ss_pred ccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHh----cCchHHHHHHHHHHHhHCeEEEEEe--CCCC-eEEEEcC Confidence 11110 00 000 00 01112222232 2555567777888999999998873 3332 4456663 Q ss_pred CcceEEEECCCCcee--------------------------------------eEEeccccc------------cccce- Q lcl|Aclame:pro 140 WNRVEPLVADDGEVF--------------------------------------YRITPDRNC------------GITEA- 168 (454) Q Consensus 140 ~~~~~~~~~~~g~~~--------------------------------------~~~~~~~~~------------~~~~~- 168 (454) .+.+..|..|.+- |........ ..+.. T Consensus 161 --~y~v~~d~~G~v~~i~rr~~~t~~~l~~~f~~~~~~~~~~~~~~~~~~v~i~~~v~~~~~~~~~~~~e~d~~~~~~es 238 (515) T protein:vir:70 161 --HYVVNRDTNGDLMDVILLQEKALRTFDPATRMAIEVGMKGKKCKEDDNVKLYTHAQYAGEGFWKINQSADDIPVGKES 238 (515) T ss_pred --eEEEeeCCCcCeeEEEeeeeccHHHHHHhhhhhhhhhhhhhhcCCCCceEEEEEEEecCCCceEEEEecCceeecccc Confidence 3444455444321 100000000 00000 Q ss_pred -eEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 169 -VTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGY 247 (454) Q Consensus 169 -~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~ 247 (454) +.+.....+..|.....+..||.||..-+...+.......+.......-...|.+.+.-+..... .... T Consensus 239 ~y~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~p~~lv~~~g~~~~----------~~l~ 308 (515) T protein:vir:70 239 RIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAMARGAALMADIKYLIRPGSQTDV----------DHFV 308 (515) T ss_pred ccccccCCceeeeeeecCCCCcccchHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeeeCcccccch----------hhcc Confidence 11222234455555666778999999999999999999999999988888877766533222111 1111 Q ss_pred cCcccCCceecC--CCceeeeccccchhhH-HHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHH--HHHHHHHHH Q lcl|Aclame:pro 248 TGENAGKTAILS--NGAKYNPTTFSPVDSQ-TVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALE--QQYYSQCLQ 322 (454) Q Consensus 248 ~g~n~g~~~vl~--~g~~~~~l~~~~~d~~-~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~--~~~~~~~i~ 322 (454) .|.+ | .++-. +++...+++. ..+.+ ..+..+.....|..+|=+........+.. |+++.+ ..-....+. T Consensus 309 ~~~~-g-~iv~g~~~~v~~~~~~~-~~d~~~~~~~i~~~~~rI~~af~~~~l~~rd~~rv---TAtEV~~r~~E~~~~LG 382 (515) T protein:vir:70 309 NSGT-G-EVITGVAEDIHIVQLGK-YADLTPISAVLEVYTRRIGVIFMMETMTRRDAERV---TAVEIQRDALEIEQNMG 382 (515) T ss_pred ccCC-c-eeecCCcccceeeecCc-ccchhHHHHHHHHHHHHHHHHHhhhhhhccCCccc---cHHHHHHHHHHHHHHhh Confidence 2221 1 12222 2333333332 23333 34556888889999997765433333332 333332 233455677 Q ss_pred HHHHHHHHHHHHhh--------cCcc-cceeeecch-hh--hhc--CHHHHHHHHHHHHhCCCcC-HHHHHHHhcCCCC- Q lcl|Aclame:pro 323 TLIESIELLLDEAL--------ETGE-NESTEFDVT-TL--LRM--DSERRMKTLGDAVKNTLLT-PNEARKRENLPPL- 386 (454) Q Consensus 323 P~~~~ie~~l~~~l--------~~~~-~~~~~f~~~-~l--~~~--d~~~~~~~~~~~~~~g~~T-~NE~R~~~g~~p~- 386 (454) |....+..+|-.-| +++. ...+...+. .+ +.. +.+....++ ..+.. +.. +-++...++.+.. T Consensus 383 pv~srL~~Ell~Pli~r~~~~~~p~~P~~~v~~~~vs~l~~L~r~q~~~~i~~~~-q~i~~-~~~~~p~~~~~id~d~~~ 460 (515) T protein:vir:70 383 GVYSLFAMTMQTPIAMWGLQEAGDSFTSELVDPVIVTGIEALGRMAELDKLANFA-QYMSL-PQTWPEPAQRAIRWGDYM 460 (515) T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCChhhcccceehhHHHHHHHHHHHHHHHHH-HHHHH-HhccChhHHhhCCHHHHH Confidence 77777777664433 1110 001111111 00 000 000000000 01100 000 0111111111000 Q ss_pred CC-ccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccccccccccHHHHHHHHHhcC Q lcl|Aclame:pro 387 AG-GDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDAVKAMFRGILKK 454 (454) Q Consensus 387 ~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a~~~~~~~~ 454 (454) .. .+..-+|..++.-+......-.+....... .........++.......+|+ T Consensus 461 ~~~a~~~g~p~~~~rs~eev~~~r~q~~~~~~~---------------~~~~~~~~~a~~~~~~~~~~~ 514 (515) T protein:vir:70 461 DWVRGQISAELPFLKSEEEMQQEMAQQAQAQQE---------------AMLNEGVAKAVPGVIQQEMKE 514 (515) T ss_pred HHHHHHhCCCccccCCHHHHHHHHHHHHHHHHH---------------HHHHHhhhhhcccchhhhhcc Confidence 00 000000000000000000000000000000 000000000011111111111 No 236 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=85.86 E-value=0.05 Score=27.73 Aligned_cols=402 Identities=12% Similarity=0.106 Sum_probs=169.7 Q ss_pred Ccchhhhhcccc---------ccccccCcccc---hh-hhhhhhhh-ccccc-----cCCccc-------cHHHHHhhHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQ---------KSGRDVREAGW---TS-LFQAVAEP-FAGAW-----QQGVKA-------DPEAVLSFHA 54 (454) Q Consensus 1 m~n~f~r~~~~~---------~~~~~~~~~~~---~~-~~~~~~~~-~~~~~-----~~~~~~-------~~~~~~~~~~ 54 (454) |..+|+.+.+.. ..+.++.++.. .. +......+ .++.. ..+... .-+..+.+|. T Consensus 3 ~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pE 82 (516) T protein:vir:10 3 FLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLINNPE 82 (516) T ss_pred chHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHhhccc Confidence 666665543321 11111111111 10 00000000 01110 011111 1244567899 Q ss_pred HHHHHHHHHHhhccc-----ceEEEeccccccce-ehhhh---HHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEe Q lcl|Aclame:pro 55 VFACISLISQDIAKM-----RLRLMQTDAQGIRR-ETRRG---DIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKI 125 (454) Q Consensus 55 v~~~i~~ia~~va~~-----~~~~~~~~~~~~~~-~~~~~---~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~ 125 (454) |..||+-|.+.+.-+ |..+.-. +.... ..+.. ....+++--+.... -..++..|.+.|..|..++ T Consensus 83 vd~Av~eIVneaiv~d~~~~pV~l~L~--~~~~s~~ik~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi~fhKi 156 (516) T protein:vir:10 83 VERAVANIVNEAIVYERGHKVVSLDLD--DTDFGSNVKEKILEEFDEVCRLLDASRK----LDTLFRRWYVDSRIFFHKI 156 (516) T ss_pred hhhHHHHhhcceeEecCCCceEEEEec--ccCcchHHHHHHHHHHHHHHHHhccchh----hhHHHhhhhhcceEEEEEE Confidence 999999998777533 2222110 00100 11111 11111222222333 3445666888999998855 Q ss_pred eC-CCCceeEEEEecCcceEEEECC-----CCc-------eeeEEeccc--------cccccceeEEehhheEEeecC-- Q lcl|Aclame:pro 126 RN-ARGQIKELRILDWNRVEPLVAD-----DGE-------VFYRITPDR--------NCGITEAVTVPAREVIHDRFN-- 182 (454) Q Consensus 126 r~-~~G~~~~l~~l~~~~~~~~~~~-----~g~-------~~~~~~~~~--------~~~~~~~~~~~~~~vih~~~~-- 182 (454) .+ ...-..+|..|+|-.++.++.- +|. .+|.|.... ....+.++.++.+-|.|.-.+ T Consensus 157 id~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~y~hSGL~ 236 (516) T protein:vir:10 157 MPNPKKGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPRSAVVYASSGLM 236 (516) T ss_pred ecCccccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeechhheeeecccce Confidence 43 3444889999999988876432 221 122222110 011123455665554433311 Q ss_pred CCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccC-CHHHHHHH----HHHHHHHh-----cC--c Q lcl|Aclame:pro 183 CFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI-TEENAKKL----KSNWDSGY-----TG--E 250 (454) Q Consensus 183 ~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~-s~e~~~~~----~~~~~~~~-----~g--~ 250 (454) +..++.. +|-|..+...+....-++...-=+--..+.-+-|+-++-+. -...+++. ..++++.+ .| . T Consensus 237 d~~~~~i-~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ 315 (516) T protein:vir:10 237 DCSDRGI-IGYLHNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTVK 315 (516) T ss_pred eCCCCce-eeeehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeec Confidence 2222333 67777777776666555555554444445445555555332 22233333 33343332 12 1 Q ss_pred ccCCce-e-----cC-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccccc----ccC-HHHHHH Q lcl|Aclame:pro 251 NAGKTA-I-----LS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPS----SDN-VEALEQ 314 (454) Q Consensus 251 n~g~~~-v-----l~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~----~~n-~e~~~~ 314 (454) +..+.+ . |+ .|.+++.|.-... +.-++-..+..+.+.++++||.+-++..+..+ .++ +.--.. T Consensus 316 ddrk~msMlEDyWLpRReGgrgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEi 394 (516) T protein:vir:10 316 NQKRNLSMTEDYWLMRRDGKSVTEVSSLPGAQT-MGDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDEL 394 (516) T ss_pred cchhhhhhHhhhcccccCCCCccceeeccccCC-cChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHH Confidence 111221 2 22 3567776654322 33345567888899999999999997654432 222 111222 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC---------ccc-----ceeeec--chhh----hh-cCHHHHHHHHHHHHh--CCC Q lcl|Aclame:pro 315 QYYSQCLQTLIESIELLLDEALET---------GEN-----ESTEFD--VTTL----LR-MDSERRMKTLGDAVK--NTL 371 (454) Q Consensus 315 ~~~~~~i~P~~~~ie~~l~~~l~~---------~~~-----~~~~f~--~~~l----~~-~d~~~~~~~~~~~~~--~g~ 371 (454) .| ...|.-+..++...|...|-+ +.. ..+.|+ .|.- .. .-...+++.+..+-. +.. T Consensus 395 KF-~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky 473 (516) T protein:vir:10 395 DF-RKFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKY 473 (516) T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccc Confidence 33 334555666666655544421 111 133333 3321 11 112234444433321 234 Q ss_pred cCHHHHHH-HhcCCCC--CCccccccccccccccccccccccccCCCccCcccCCCCCCcccCc Q lcl|Aclame:pro 372 LTPNEARK-RENLPPL--AGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDG 432 (454) Q Consensus 372 ~T~NE~R~-~~g~~p~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 432 (454) ++.+=+++ .|.+.-. +..+... .. ..+.+--..+.+++|- T Consensus 474 ~s~~yi~k~ILr~tDeei~~e~k~I--------~~-------------E~~~~~~~~p~~~~~f 516 (516) T protein:vir:10 474 VSHDYVMKNILQMTEEQIAQEEKQI--------EQ-------------EAGIKRFQNPENEDDF 516 (516) T ss_pred cchHHHHHHHhcCCHhhHHHHHHHH--------HH-------------hhhCCCCCCCCccccC Confidence 55555553 4444321 1111100 00 0000000000111111 No 237 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=85.86 E-value=0.05 Score=27.73 Aligned_cols=402 Identities=12% Similarity=0.106 Sum_probs=169.7 Q ss_pred Ccchhhhhcccc---------ccccccCcccc---hh-hhhhhhhh-ccccc-----cCCccc-------cHHHHHhhHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQ---------KSGRDVREAGW---TS-LFQAVAEP-FAGAW-----QQGVKA-------DPEAVLSFHA 54 (454) Q Consensus 1 m~n~f~r~~~~~---------~~~~~~~~~~~---~~-~~~~~~~~-~~~~~-----~~~~~~-------~~~~~~~~~~ 54 (454) |..+|+.+.+.. ..+.++.++.. .. +......+ .++.. ..+... .-+..+.+|. T Consensus 3 ~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pE 82 (516) T protein:vir:10 3 FLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLINNPE 82 (516) T ss_pred chHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHhhccc Confidence 666665543321 11111111111 10 00000000 01110 011111 1244567899 Q ss_pred HHHHHHHHHHhhccc-----ceEEEeccccccce-ehhhh---HHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEe Q lcl|Aclame:pro 55 VFACISLISQDIAKM-----RLRLMQTDAQGIRR-ETRRG---DIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKI 125 (454) Q Consensus 55 v~~~i~~ia~~va~~-----~~~~~~~~~~~~~~-~~~~~---~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~ 125 (454) |..||+-|.+.+.-+ |..+.-. +.... ..+.. ....+++--+.... -..++..|.+.|..|..++ T Consensus 83 vd~Av~eIVneaiv~d~~~~pV~l~L~--~~~~s~~ik~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi~fhKi 156 (516) T protein:vir:10 83 VERAVANIVNEAIVYERGHKVVSLDLD--DTDFGSNVKEKILEEFDEVCRLLDASRK----LDTLFRRWYVDSRIFFHKI 156 (516) T ss_pred hhhHHHHhhcceeEecCCCceEEEEec--ccCcchHHHHHHHHHHHHHHHHhccchh----hhHHHhhhhhcceEEEEEE Confidence 999999998777533 2222110 00100 11111 11111222222333 3445666888999998855 Q ss_pred eC-CCCceeEEEEecCcceEEEECC-----CCc-------eeeEEeccc--------cccccceeEEehhheEEeecC-- Q lcl|Aclame:pro 126 RN-ARGQIKELRILDWNRVEPLVAD-----DGE-------VFYRITPDR--------NCGITEAVTVPAREVIHDRFN-- 182 (454) Q Consensus 126 r~-~~G~~~~l~~l~~~~~~~~~~~-----~g~-------~~~~~~~~~--------~~~~~~~~~~~~~~vih~~~~-- 182 (454) .+ ...-..+|..|+|-.++.++.- +|. .+|.|.... ....+.++.++.+-|.|.-.+ T Consensus 157 id~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~y~hSGL~ 236 (516) T protein:vir:10 157 MPNPKKGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPRSAVVYASSGLM 236 (516) T ss_pred ecCccccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeechhheeeecccce Confidence 43 3444889999999988876432 221 122222110 011123455665554433311 Q ss_pred CCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccC-CHHHHHHH----HHHHHHHh-----cC--c Q lcl|Aclame:pro 183 CFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI-TEENAKKL----KSNWDSGY-----TG--E 250 (454) Q Consensus 183 ~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~-s~e~~~~~----~~~~~~~~-----~g--~ 250 (454) +..++.. +|-|..+...+....-++...-=+--..+.-+-|+-++-+. -...+++. ..++++.+ .| . T Consensus 237 d~~~~~i-~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ 315 (516) T protein:vir:10 237 DCSDRGI-IGYLHNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTVK 315 (516) T ss_pred eCCCCce-eeeehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeec Confidence 2222333 67777777776666555555554444445445555555332 22233333 33343332 12 1 Q ss_pred ccCCce-e-----cC-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccccc----ccC-HHHHHH Q lcl|Aclame:pro 251 NAGKTA-I-----LS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPS----SDN-VEALEQ 314 (454) Q Consensus 251 n~g~~~-v-----l~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~----~~n-~e~~~~ 314 (454) +..+.+ . |+ .|.+++.|.-... +.-++-..+..+.+.++++||.+-++..+..+ .++ +.--.. T Consensus 316 ddrk~msMlEDyWLpRReGgrgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEi 394 (516) T protein:vir:10 316 NQKRNLSMTEDYWLMRRDGKSVTEVSSLPGAQT-MGDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDEL 394 (516) T ss_pred cchhhhhhHhhhcccccCCCCccceeeccccCC-cChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHH Confidence 111221 2 22 3567776654322 33345567888899999999999997654432 222 111222 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC---------ccc-----ceeeec--chhh----hh-cCHHHHHHHHHHHHh--CCC Q lcl|Aclame:pro 315 QYYSQCLQTLIESIELLLDEALET---------GEN-----ESTEFD--VTTL----LR-MDSERRMKTLGDAVK--NTL 371 (454) Q Consensus 315 ~~~~~~i~P~~~~ie~~l~~~l~~---------~~~-----~~~~f~--~~~l----~~-~d~~~~~~~~~~~~~--~g~ 371 (454) .| ...|.-+..++...|...|-+ +.. ..+.|+ .|.- .. .-...+++.+..+-. +.. T Consensus 395 KF-~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky 473 (516) T protein:vir:10 395 DF-RKFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKY 473 (516) T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccc Confidence 33 334555666666655544421 111 133333 3321 11 112234444433321 234 Q ss_pred cCHHHHHH-HhcCCCC--CCccccccccccccccccccccccccCCCccCcccCCCCCCcccCc Q lcl|Aclame:pro 372 LTPNEARK-RENLPPL--AGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDG 432 (454) Q Consensus 372 ~T~NE~R~-~~g~~p~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 432 (454) ++.+=+++ .|.+.-. +..+... .. ..+.+--..+.+++|- T Consensus 474 ~s~~yi~k~ILr~tDeei~~e~k~I--------~~-------------E~~~~~~~~p~~~~~f 516 (516) T protein:vir:10 474 VSHDYVMKNILQMTEEQIAQEEKQI--------EQ-------------EAGIKRFQNPENEDDF 516 (516) T ss_pred cchHHHHHHHhcCCHhhHHHHHHHH--------HH-------------hhhCCCCCCCCccccC Confidence 55555553 4444321 1111100 00 0000000000111111 No 238 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=85.07 E-value=0.056 Score=27.47 Aligned_cols=414 Identities=13% Similarity=0.061 Sum_probs=151.7 Q ss_pred Ccch-hhhhccccccccccCcccchhhhhhh---------hhhccccccCCccccHHHHHh----hHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MWNL-LRRTRKNQKSGRDVREAGWTSLFQAV---------AEPFAGAWQQGVKADPEAVLS----FHAVFACISLISQDI 66 (454) Q Consensus 1 m~n~-f~r~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~----~~~v~~~i~~ia~~v 66 (454) |.+. +.--.. +...+......|.-+-..+ +..+......-..-..+.+++ .+++...++.++..+ T Consensus 1 m~~~~~~~v~~-~h~~y~a~~~~W~~ird~~~G~~~~r~~g~~YLPk~~~E~~~~Y~~rl~rA~~~n~~~~tl~~l~G~v 79 (513) T protein:vir:97 1 MADKDPKSPAT-TSGAYDQMLPRWHVIETLLGGTEAMREAGETYLPRHQEETDKGYQERLASAVLLNMVEQTLDTLSGKP 79 (513) T ss_pred CCCCCCCCCCc-CCHHHHHHHHHHHHHHHHhcChHHHHhhcccCCCCCCCCCHHHHHHHHhcccCCChHHHHHHHHhhhh Confidence 4442 110000 0000000001111110000 000000000000001122232 344555555555555 Q ss_pred cccceEEEeccccccceehhhhHHHHhhhhc-cccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCce------------- Q lcl|Aclame:pro 67 AKMRLRLMQTDAQGIRRETRRGDIARLCRRP-NAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQI------------- 132 (454) Q Consensus 67 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p-n~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~------------- 132 (454) .+-|..+. .+ ........|+.+. -...+-.+|.+.++...|.+|.+++++-....+.+ T Consensus 80 f~k~p~~~----~~----~p~~~~~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~~~~T~Ade~~ 151 (513) T protein:vir:97 80 FSEPIKLN----ED----VPKAIEETILPDVDLQGNNLDVFARQWFREGMAKALCHVLIDMPRPAPREDGQPRTLADDRR 151 (513) T ss_pred hhcCcccC----cC----chHHHHHHHhhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCCCccchhHHhHHHHHh Confidence 55554331 00 0111121233333 35568899999999999999999998855432210 Q ss_pred ----eEEEEecCcceEEE--------------------ECCCCc--ee---eEEecc-----------ccccccceeE-- Q lcl|Aclame:pro 133 ----KELRILDWNRVEPL--------------------VADDGE--VF---YRITPD-----------RNCGITEAVT-- 170 (454) Q Consensus 133 ----~~l~~l~~~~~~~~--------------------~~~~g~--~~---~~~~~~-----------~~~~~~~~~~-- 170 (454) -.+..+.|..|--+ .+.+|+ .. |++... ......+.+. T Consensus 152 ~~~rPy~~~~~~e~IinW~~~~v~G~~~L~~v~l~E~~~~~Dgf~~~~~~q~rvL~~g~~~v~r~~~~~~~~~~e~~~~~ 231 (513) T protein:vir:97 152 EGLRPYWVMIKPECLLFARSEVINGVEVLQHVRIIEHYMEQDGFAEVCKRRIRVLEPGLVQLWEPVKKSNAQKEEWALAD 231 (513) T ss_pred hccCceEEEecHhhhcCcceeccCcceeeeeEEEEEEEeecCCCcceEEEEEEEEeCceEEEEEeecCCCccccceEEec Confidence 12333444433211 111221 11 110000 0000000000 Q ss_pred -----EehhheEEeecCCCcCcccccchhhh-hHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 171 -----VPAREVIHDRFNCFFHPLIGLPPVYA-AGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWD 244 (454) Q Consensus 171 -----~~~~~vih~~~~~~~~~~~G~s~l~~-~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~ 244 (454) +..-.++.+- ....+...|.||+.. +.-.+..+.....+... +...+.|..+++-- +++..+ T Consensus 232 ~g~~~l~~IP~v~~~-~~~~~~~~~~pPLl~LA~ln~~hy~~~Sd~~~i-l~~~~~P~l~~~G~---~~~~~~------- 299 (513) T protein:vir:97 232 EWATGLNYVPLVTFY-ADRQGFMMGKPPLLDLAHLNVAHWQSASDQRHI-LTVSRFPILACSGA---SGEDSD------- 299 (513) T ss_pred CCCCcCCceeEEEEe-cCCCCCCCCccchHHHHHHHHHHHhhhhhHHHH-HHhcccceeeeecC---CcCCCC------- Confidence 1111122222 223345568888765 44455555555555554 44556677776532 111110 Q ss_pred HHhcCcccCCceecCC-Cc--eeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHH--HHHHHHH Q lcl|Aclame:pro 245 SGYTGENAGKTAILSN-GA--KYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEAL--EQQYYSQ 319 (454) Q Consensus 245 ~~~~g~n~g~~~vl~~-g~--~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~--~~~~~~~ 319 (454) ...-|.+ .++.+++ |. .|.+.+-+.-.. ..+..+...+++ ...|. .++... +.+ .++++. ...-..+ T Consensus 300 ~i~iG~~--~~~~lpe~~~~~~yie~~g~~i~~-~~~~l~~le~qm-~~~Ga--~ll~~~-~~~-~Ta~a~~~~~~~~~S 371 (513) T protein:vir:97 300 PVVVGPN--KVLYNPDPAGRFYYVEHTGQAIAA-GRTDLKDLEEQM-AGYGA--EFLKRK-TGG-QTATARALDSAEATS 371 (513) T ss_pred ceEeecc--ccccCCCCCCcceeeccCchhHHH-HHHHHHHHHHHH-HHHHH--HhhccC-Ccc-ccHHHHHHHHHHHHH Confidence 1223433 3566764 44 444554333222 223333333444 22222 222221 112 222332 2333455 Q ss_pred HHHHHHHHHHHHHHHhhc------C--cccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhc----CCCCC Q lcl|Aclame:pro 320 CLQTLIESIELLLDEALE------T--GENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKREN----LPPLA 387 (454) Q Consensus 320 ~i~P~~~~ie~~l~~~l~------~--~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g----~~p~~ 387 (454) .|.-++..+++.+++.|- . +....+.++.+-....-....++.+.+++..|.++....++.+- ++|.- T Consensus 372 ~L~~~a~~le~al~~~l~~~a~wlg~~~~~~~v~in~dF~~~~~~~~~~~al~~a~~~G~is~~t~~~~L~r~gvl~~d~ 451 (513) T protein:vir:97 372 DLSAMTGLFEDALAQALDITADWLRLGPNGGTVELVKDYDLEEMDAPGLQALQVAREKRDISRKTYLNGLRLRGVLPEDF 451 (513) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeccccCcccCCHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCccC Confidence 666777888888887551 1 12233444433322222234567778889999988766665542 22211 Q ss_pred Ccccc---ccc-ccccccccccc-ccccccCCCccCc-ccCCCCCCcccCcccccccccccH Q lcl|Aclame:pro 388 GGDAL---YLQ-QQNYSLEALSR-RDAREDPFASSGK-TASVPQAVAASDGNKAITETEHDA 443 (454) Q Consensus 388 ~~d~~---~~~-~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~ 443 (454) ..+.. ... ......+...+ ....+.++.+.+. ..+.....+.........+..-+. T Consensus 452 d~~~~~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (513) T protein:vir:97 452 DEDEDWEELMEEISEAMGRAGLDLDPAQKNPPEGGEGEGEGEGEGGEGGEGGEGGGNPGGES 513 (513) T ss_pred CHHHHHHHHHHhhhhccCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCC Confidence 11111 000 00000000000 0000011101000 000001111111111111111111 No 239 >protein:vir:108049 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595296;genbank:gi:161622602;genbank:GeneID:5783768 Probab=84.98 E-value=0.056 Score=27.44 Aligned_cols=405 Identities=13% Similarity=0.092 Sum_probs=168.2 Q ss_pred Ccchhhhhccccc-----------cccccCccc-chhhhh---------hhhhhccccccCCcc------ccHHHHHhhH Q lcl|Aclame:pro 1 MWNLLRRTRKNQK-----------SGRDVREAG-WTSLFQ---------AVAEPFAGAWQQGVK------ADPEAVLSFH 53 (454) Q Consensus 1 m~n~f~r~~~~~~-----------~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~------~~~~~~~~~~ 53 (454) |+.+|+.+.+... .+...+... ...... ++...+.+....... -.-+..+.+| T Consensus 7 ~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~~dGa~~I~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR~ma~~p 86 (524) T protein:vir:10 7 ILSFLKPWANEDEKEYKQQINNNLESVTAPKLDDGAREIETQEQNIPYNALMQQMFGSNEPEVKNTRELIDTYRNLMNNY 86 (524) T ss_pred HHHHhhhhhcchhhhhhhhhccCCCccccCCCCCCceeeccCcccccchhhhhhhhhcccchhhhHHHHHHHHHHHhhcc Confidence 5556655543211 111111111 100000 000001110111000 0124456789 Q ss_pred HHHHHHHHHHHhhccc-----ceEEEeccccccceehhhh---HHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEe Q lcl|Aclame:pro 54 AVFACISLISQDIAKM-----RLRLMQTDAQGIRRETRRG---DIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKI 125 (454) Q Consensus 54 ~v~~~i~~ia~~va~~-----~~~~~~~~~~~~~~~~~~~---~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~ 125 (454) .|..||+-|.+.+.-+ |..+.-.+-+ -....+.. ....+++--+.... -..++..|.+.|..|..++ T Consensus 87 Evd~Av~eIVneaiv~d~~~~pV~l~Ld~~~-~s~siK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi~fHki 161 (524) T protein:vir:10 87 EVDNAVQEIVSDAIVYEDDKEVVALNLDGTD-FSQSIKDKILAEFSEVLNLLNFQRK----GTDHFQRWYVDSRIFFHKI 161 (524) T ss_pred chhhHHHHhhcceeEecCCCceEEEEecccC-cchHHHHHHHHHHHHHHHHhccchh----hhHHHhhheeeceEEEEEE Confidence 9999999998777533 2222110000 00011111 11112222222233 3445666888999998876 Q ss_pred eCC---CCceeEEEEecCcceEEEEC-----CCCc------eeeEEeccc---------cccccceeEEehhheEEeecC Q lcl|Aclame:pro 126 RNA---RGQIKELRILDWNRVEPLVA-----DDGE------VFYRITPDR---------NCGITEAVTVPAREVIHDRFN 182 (454) Q Consensus 126 r~~---~G~~~~l~~l~~~~~~~~~~-----~~g~------~~~~~~~~~---------~~~~~~~~~~~~~~vih~~~~ 182 (454) -+. ..-..+|..|+|-.++..+. ..|. .-|+++.+. ....+..+.++.+.|.|.-.+ T Consensus 162 id~~~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~~~~~~~~~~~~~~ikI~~dAIvy~~SG 241 (524) T protein:vir:10 162 INPKKMKDGVQELRRLDPRQVQYIREIVTRMEDGVKIVDGYREFFVYDTGHESYCADGRIYSAGTKVKIPRAAVVYAHSG 241 (524) T ss_pred eeCCCccccceeeeeeCCccceeeeeecccCcccchhhcchhhheeecCCCcccccCcceecCCcceecchhheeeeccC Confidence 542 23488999999999976432 1221 111111111 113345677888888886543 Q ss_pred C-CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCcc-CCHHHHHHHHH----HHHHHh-----cC-- Q lcl|Aclame:pro 183 C-FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGS-ITEENAKKLKS----NWDSGY-----TG-- 249 (454) Q Consensus 183 ~-~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~-~s~e~~~~~~~----~~~~~~-----~g-- 249 (454) . +.++-.-+|-|..+...+....-++...-=+--..+.-+-|+-++-+ +-...+++... ++++.+ .| T Consensus 242 L~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnlPk~KAeqYl~~im~k~kNKlvYDa~TGev 321 (524) T protein:vir:10 242 LLDCCGKNIIGYLQRAIKPANQLKLMEDAMVIYRITRAPDRRVFYIDTGNMPSRKAAAQMQHIMNTMKNRVVYDASTGKI 321 (524) T ss_pred cccCCCCceeccchHhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeccCCee Confidence 2 22223445667777666665555555554444444544555555533 22233333333 333321 22 Q ss_pred cccCCce-e-----cC-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccc--c--ccC-HHHHH Q lcl|Aclame:pro 250 ENAGKTA-I-----LS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPP--S--SDN-VEALE 313 (454) Q Consensus 250 ~n~g~~~-v-----l~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~--~--~~n-~e~~~ 313 (454) .+..+.+ . |+ .|.+++.|.-... +.-++-..+..+.+.++++||.+-|+..+.+ + .++ +.-.. T Consensus 322 ~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~f~~gr~~EItRDE 400 (524) T protein:vir:10 322 KNQQHNMSMTEDYWLQRRDGKAVTEVDTMPGATG-MSDMDDVLYFRTALYRALRIPESRIPSESNSGVMFDAGTAITRDE 400 (524) T ss_pred ccchhhhhhHhhhcccccCCCCccceeeccccCC-cChHHHHHHHHHHHHHHhCCCchhccCCCCccccccccchhhHHH Confidence 1111221 2 22 3567776654322 3334556788889999999999999643321 1 222 22222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC---------ccc-----ceeeec--chhh----hh-cCHHHHHHHHHHHHh-CC- Q lcl|Aclame:pro 314 QQYYSQCLQTLIESIELLLDEALET---------GEN-----ESTEFD--VTTL----LR-MDSERRMKTLGDAVK-NT- 370 (454) Q Consensus 314 ~~~~~~~i~P~~~~ie~~l~~~l~~---------~~~-----~~~~f~--~~~l----~~-~d~~~~~~~~~~~~~-~g- 370 (454) ..|.+ .|.-+..++...|...|-+ +.. ..++|+ .|.- .. .-...+++.+..+-. .| T Consensus 401 iKF~K-FI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGk 479 (524) T protein:vir:10 401 LKFAK-WIRQLQNKFEEIFLDPLKTNLILKKIITEDEWEREINNIKVTFNRDSYFSEMKDAEIMERRINMLTMAEPFIGK 479 (524) T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcc Confidence 33333 3555666666555544321 111 133333 3321 11 111223333333322 12 Q ss_pred CcCHHHHHH-HhcCCCC--CCccccccccccccccccccccccccCCCccCcccCCCCCCcccCc Q lcl|Aclame:pro 371 LLTPNEARK-RENLPPL--AGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDG 432 (454) Q Consensus 371 ~~T~NE~R~-~~g~~p~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 432 (454) .++.+=+++ .|.+.-. ...+... ....+ .+--.++.... +|- T Consensus 480 y~s~~yi~k~ILr~tDeei~~~~k~I--------~~E~k---~~~~~~~~~~~---------~~f 524 (524) T protein:vir:10 480 YISHQTAMKDFLQMTDEEINQEAKQI--------EEESK---EARFQNPDEEE---------EDF 524 (524) T ss_pred cchhHHHHHHHhccCHHHHHHHHHHH--------HHHhh---cCCCCCCChhh---------hcC Confidence 223333332 3333211 0000000 00000 00000000000 000 No 240 >protein:vir:103330 Length: 517 # NCBI annotation: head portal-like protein # Family: family:all:481 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039666;genbank:gi:125999995;genbank:GeneID:4818406 Probab=84.12 E-value=0.063 Score=27.17 Aligned_cols=391 Identities=8% Similarity=-0.018 Sum_probs=143.9 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhc------ccceE-E Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIA------KMRLR-L 73 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va------~~~~~-~ 73 (454) .|+-++..+.. -..-|.....+... ...+...+...+ +... +++-..|++.+|..+. +-||- + T Consensus 15 r~~~Lk~~R~~-------~e~~w~e~~~~~lP-~~~~~~~~~~~~-~~~~-dstg~~a~~~LAa~l~~~ltpp~~~WF~l 84 (517) T protein:vir:10 15 LYEQLVGKRSP-------FLSRAENYSRFTLP-YLMADVNDDLSS-QNAW-QDDGASATNFLSNKLSQVLFPAQRSFFRI 84 (517) T ss_pred HHHHHHHhhhH-------HHHHHHHHHHHhcc-ccccCCCCCccc-cccc-cchHHHHHHHHHHHHHHhhcCCCCccccc Confidence 23333211111 01122222222211 111111111111 1112 3333456655555543 22442 2 Q ss_pred Eeccc-----ccc--ce-ehh------hhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEec Q lcl|Aclame:pro 74 MQTDA-----QGI--RR-ETR------RGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILD 139 (454) Q Consensus 74 ~~~~~-----~~~--~~-~~~------~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~ 139 (454) -..+. ++. .. ..+ ...++..+.+ -+++.=+..++.++..+|++++++ ...+.....|||. T Consensus 85 ~~~~~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~----snf~~~~~~~~~~L~~~G~a~ly~--~~~~~~~~~~pl~ 158 (517) T protein:vir:10 85 DLTPEGIKQLDNEAMTQSTAQKLLSDVEKAAMLYGES----LQFRPAVVEAFKHLIVTGNVMMYH--PDKTSPIQAVPLH 158 (517) T ss_pred cCCHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhHCeEEEEE--eCCCCcEEEEEcC Confidence 11110 000 00 001 0111122222 245556777888899999998875 2333345666664 Q ss_pred CcceEEEECCCCceeeEE--------------------------------------eccc-cc-----------cccc-- Q lcl|Aclame:pro 140 WNRVEPLVADDGEVFYRI--------------------------------------TPDR-NC-----------GITE-- 167 (454) Q Consensus 140 ~~~~~~~~~~~g~~~~~~--------------------------------------~~~~-~~-----------~~~~-- 167 (454) .+.+..|..|.+.-.| .... +. ..+. T Consensus 159 --~y~v~~d~~G~v~~ivrr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~~~~~~~d~~~~~~~s 236 (517) T protein:vir:10 159 --HYCVRRDNNGTVLDIVFLQEKALETFEPSIRMAIQASRKGKQYKDKDNVKLYTHAKRTKDGKYLIRQSADDVPVGKES 236 (517) T ss_pred --eEEEeeCCCcCeEEEEeeeeccHHHHHHHhhhhcchhhhhhccCCcCceEEEEEEEEeCCCceEEEEEeCceeecccc Confidence 4444445444221000 0000 00 0000 Q ss_pred eeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 168 AVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGY 247 (454) Q Consensus 168 ~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~ 247 (454) .+.+.....+-.|.....+..||.||..-+...+.......+.......-...|...+.-+...... ... T Consensus 237 ~y~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~~~~~~~~~a~~~~~lv~~~~~~~~~----------~l~ 306 (517) T protein:vir:10 237 TVTEDKSPFLILTWKRSYGEDYGRGMAEDHAGAFFVIQFLSEALARGMALMADVKYLVKPGSYTDIN----------QFV 306 (517) T ss_pred ccccccCCeeeeeeeecCCCCcccchHHHhHHHHHHHHHHHHHHHHHHHHhccCCcccCcccccchh----------hcc Confidence 0112233345556666667899999999999999999999999998888887777664332221111 111 Q ss_pred cCcccCCc-eecCCCceeeeccccchhhH-HHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH--HHHHHHHHH Q lcl|Aclame:pro 248 TGENAGKT-AILSNGAKYNPTTFSPVDSQ-TVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ--QYYSQCLQT 323 (454) Q Consensus 248 ~g~n~g~~-~vl~~g~~~~~l~~~~~d~~-~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~--~~~~~~i~P 323 (454) .|.+ |-+ .--.+++...+++.. .|.+ ..+..+.....|..+|=+... +..+.. .-|+++.+. .-....+.| T Consensus 307 ~~~~-g~~~~g~~~~v~~~~~~~~-~d~~~~~~~i~~~~~rI~~af~~~~l--~~~~~~-rvTAtEV~~r~~E~~~~LGp 381 (517) T protein:vir:10 307 EGGS-GAVLHGVEGDIHIVQLGKY-ADYTPIQAVLNDYRQRIGRVFMMEAM--TRRDAE-RVTAYEIQRDAMLVEQSLGG 381 (517) T ss_pred CCCc-cccccCCcccceeeecccc-cchhHHHHHHHHHHHHHHHHHhhhhh--hccCCc-cccHHHHHHHHHHHHHHhhh Confidence 1221 111 111233333333332 2333 355568888899999965542 222221 224444332 234455667 Q ss_pred HHHHHHHHHHHhhcC-------c--ccceeeecchhhh----h-cCHHHHHHHHHHHHhCC--------CcCHHH----H Q lcl|Aclame:pro 324 LIESIELLLDEALET-------G--ENESTEFDVTTLL----R-MDSERRMKTLGDAVKNT--------LLTPNE----A 377 (454) Q Consensus 324 ~~~~ie~~l~~~l~~-------~--~~~~~~f~~~~l~----~-~d~~~~~~~~~~~~~~g--------~~T~NE----~ 377 (454) ....+..+|-.-|+. + ....+..++...+ + .+.......+...-... .+..++ + T Consensus 382 v~~rl~~Ell~Pli~r~~~~l~~~l~~~~v~~~~~s~la~l~r~~~~~~i~~~~~~i~~~a~~~~~~~~~id~d~~~~~~ 461 (517) T protein:vir:10 382 VYSLFATTFQGPLARWFMNGISSILTSKNVSPTILTGIEALGRMAELDKLGTFNGYVSMTAQWPEPLQQAIKWPDFTDWV 461 (517) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCccceeeccHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHhcCCHHHHHHHH Confidence 666665553221110 0 0111222221111 1 01111111111000000 011111 1 Q ss_pred HHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccccccccccHHHHHHHHHhcC Q lcl|Aclame:pro 378 RKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDAVKAMFRGILKK 454 (454) Q Consensus 378 R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a~~~~~~~~ 454 (454) .+.+|.|+ +++.-+........+... .+-......++-..+.+.++. T Consensus 462 a~~~Gvp~-----------~~irs~~ev~~~~~~~~~-------------------~~~~~~~~~~ag~~~~~~~~~ 508 (517) T protein:vir:10 462 QGQISANF-----------PFFKTQDELNAEAQAQQE-------------------QEATKYAAEQAGKAIPDMVKN 508 (517) T ss_pred HHHhCCCh-----------hhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhC Confidence 12223221 100000000000000000 000000000000011111111 No 241 >protein:vir:6596 Length: 521 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891727;genbank:gi:33620636;genbank:GeneID:1725288 Probab=82.40 E-value=0.077 Score=26.68 Aligned_cols=401 Identities=12% Similarity=0.100 Sum_probs=162.2 Q ss_pred Ccchh---hhhcccc---------cccccc--Cc-ccchhhhh-hhhhh---ccccccCCc-----cc-------cHHHH Q lcl|Aclame:pro 1 MWNLL---RRTRKNQ---------KSGRDV--RE-AGWTSLFQ-AVAEP---FAGAWQQGV-----KA-------DPEAV 49 (454) Q Consensus 1 m~n~f---~r~~~~~---------~~~~~~--~~-~~~~~~~~-~~~~~---~~~~~~~~~-----~~-------~~~~~ 49 (454) ||..+ +++.+.. ..+.++ +. .+.....+ ....+ .++.+.... .. .-+.. T Consensus 1 ~~~~l~~~~~~~~~d~~~~~e~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~~~g~~~~~~~~e~~~~~~~eLI~~YR~m 80 (521) T protein:vir:65 1 MFSRLKMLARWADFDNDKYEEQIKDKAESIAAPKNNDGATEVEINDNSPASSWNSLTQQFYSTDQKISTTKQLVNTYRGL 80 (521) T ss_pred CccchhhhhhccCchhhHHHhhhccCCCcccCCCCCCCceeecccCCccccccccceeeeccccchhhhHHHHHHHHHHH Confidence 55533 2322221 111111 11 11111110 00000 011111100 00 12345 Q ss_pred HhhHHHHHHHHHHHHhhccc-----ceEEEeccccccceehhhh---HHHHhhhhccccCCHHHHHHHHHHHHHHhCCeE Q lcl|Aclame:pro 50 LSFHAVFACISLISQDIAKM-----RLRLMQTDAQGIRRETRRG---DIARLCRRPNAQQNRIQFFELWLNAKLRHGNTV 121 (454) Q Consensus 50 ~~~~~v~~~i~~ia~~va~~-----~~~~~~~~~~~~~~~~~~~---~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~ 121 (454) +.+|.|..||+-|.+.+.-+ |..+.-. +..-....+.. ....+++--+.... -..++..|.+.|..| T Consensus 81 a~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~-~~~~s~~iK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi~ 155 (521) T protein:vir:65 81 MNNHEVENAVQNIVNDAIVFEEGHEVVSLNLE-ATGFSESVKERIHEEFKDLLNTIQFDRR----GQDMFRRWYVDSRIF 155 (521) T ss_pred hhccchhhHHHHhhcceeEecCCCceEEEEec-ccccchHHHHHHHHHHHHHHHHhccchh----hhHHHhhhhhcceeE Confidence 67899999999998777533 2222110 10000011111 11112222222333 345566688899999 Q ss_pred EEEeeCCC--CceeEEEEecCcceEEEECC-----CC------ce-eeEEecc--------ccccccceeEEehhheEEe Q lcl|Aclame:pro 122 VLKIRNAR--GQIKELRILDWNRVEPLVAD-----DG------EV-FYRITPD--------RNCGITEAVTVPAREVIHD 179 (454) Q Consensus 122 i~~~r~~~--G~~~~l~~l~~~~~~~~~~~-----~g------~~-~~~~~~~--------~~~~~~~~~~~~~~~vih~ 179 (454) ..++-+.+ .-..+|..|+|-.++..+.- .+ .. .|.|... .....+..+.++.+- |++ T Consensus 156 fhkiid~~pk~GI~ELr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~vkI~~dA-I~y 234 (521) T protein:vir:65 156 FHKIIGKNPKDGIVELRQLDPRNLEYVREIITEDTPEGKIYKATKEYFIYTVGNSSYCAGGQVFSPNSRVKIPRSA-ITY 234 (521) T ss_pred EEEEEcCCccccceeeeeeCCcceeeeeeecccccCCcceecceeeeeeeecCCcceeccceeecCCcceeechhh-eee Confidence 99885433 44889999999998876432 11 11 1222110 011112334555443 444 Q ss_pred ecCC--CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCcc-CCHHHHHH----HHHHHHHHh----- Q lcl|Aclame:pro 180 RFNC--FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGS-ITEENAKK----LKSNWDSGY----- 247 (454) Q Consensus 180 ~~~~--~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~-~s~e~~~~----~~~~~~~~~----- 247 (454) -+.. +.++-.-+|-|..+...+....-++...-=+--..+.-+-|+-++-+ +-...+++ +..++++.+ T Consensus 235 ~hSGl~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~ 314 (521) T protein:vir:65 235 AHSGLMDCDDKYIIGYLHRAVKPANQLKLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDAS 314 (521) T ss_pred eeccceeCCCCeeeecchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeecc Confidence 3321 12222335666666666665555555554444444444555555533 22223333 334444321 Q ss_pred cCc--ccCCc-eec-----C-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccccc----ccC-H Q lcl|Aclame:pro 248 TGE--NAGKT-AIL-----S-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPS----SDN-V 309 (454) Q Consensus 248 ~g~--n~g~~-~vl-----~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~----~~n-~ 309 (454) .|. +..+. ..+ + .|.+++.|.-... +.-++-..+..+.+.++++||.+-++..+.+. .++ + T Consensus 315 TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~gr~~EI 393 (521) T protein:vir:65 315 TGKLKNQQANLSMTEDYWLQRRDGKAITDVTTLPGASG-MSDIDDIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEI 393 (521) T ss_pred cccccccccccchhhhhcccccCCCCccceeecccCCC-cChHHHHHHHHHHHHHHhCCCceeccCCCCcceeccccchh Confidence 221 11121 122 1 3567777654222 23344567888899999999999986544322 122 2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------ccc-----ceeeec--chhhh----h-cCHHHHHHHHHHHHh Q lcl|Aclame:pro 310 EALEQQYYSQCLQTLIESIELLLDEALET---------GEN-----ESTEFD--VTTLL----R-MDSERRMKTLGDAVK 368 (454) Q Consensus 310 e~~~~~~~~~~i~P~~~~ie~~l~~~l~~---------~~~-----~~~~f~--~~~l~----~-~d~~~~~~~~~~~~~ 368 (454) .-....|.+ .|.-+..++...|...|-+ +.. ..+.|+ .|.-. . .-...+++.+..+-. T Consensus 394 tRDEiKF~K-FI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dp 472 (521) T protein:vir:65 394 TRDELEFSK-FIRTLQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITP 472 (521) T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhh Confidence 222333333 3555666665555543321 111 123333 33211 1 111223333333322 Q ss_pred -CC-CcCHHHHHH-HhcCCCC--CCccccc---cccccccccccccccccccCCCcc Q lcl|Aclame:pro 369 -NT-LLTPNEARK-RENLPPL--AGGDALY---LQQQNYSLEALSRRDAREDPFASS 417 (454) Q Consensus 369 -~g-~~T~NE~R~-~~g~~p~--~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 417 (454) .| .++.+=+++ .|.+.-. ...+... ......+ .++..-..- T Consensus 473 yvGky~S~dyi~k~ILr~tDeei~~~~k~I~~E~~~~~~~--------~p~~~~~~f 521 (521) T protein:vir:65 473 YIGKYFSNQTVMRDILKYTDDQMDTEKKQIEEEANDPRFK--------QTPDEIEDF 521 (521) T ss_pred hhccccchHHHHHHHhccCHHHHHHHHHHHHHhhhCCCCC--------CCcccccCC Confidence 12 223333332 2333210 0000000 0000000 000000000 No 242 >protein:vir:78393 Length: 489 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110831;genbank:gi:134288592;genbank:GeneID:5179656 Probab=81.73 E-value=0.083 Score=26.51 Aligned_cols=399 Identities=12% Similarity=0.041 Sum_probs=154.0 Q ss_pred Ccchhhhhcccccc--ccccCcccchhhhhhhhh--h------ccccccCCc-cccHHHHHh----hHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MWNLLRRTRKNQKS--GRDVREAGWTSLFQAVAE--P------FAGAWQQGV-KADPEAVLS----FHAVFACISLISQD 65 (454) Q Consensus 1 m~n~f~r~~~~~~~--~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~-~~~~~~~~~----~~~v~~~i~~ia~~ 65 (454) |..-=.+......+ ....-...|.-+-..++. . +........ ....+.++. .+++...++.++.. T Consensus 1 ~~~~~~~~~~V~~~hp~y~a~~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~~tl~~l~G~ 80 (489) T protein:vir:78 1 MLTENGQGSGVKTKHREWLHYAPKWQKVRHALAGELVSYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTRRTLSGMVGS 80 (489) T ss_pred CccCCCccCCCCccCHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCCCCCChHHHHHHHhccccCChHHHHHHHHhch Confidence 32211110000000 000000001100000000 0 000000000 000122222 34455555555555 Q ss_pred hcccceEEEeccccccceehhhhHHHHhhhhc-cccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCc-----------ee Q lcl|Aclame:pro 66 IAKMRLRLMQTDAQGIRRETRRGDIARLCRRP-NAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQ-----------IK 133 (454) Q Consensus 66 va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p-n~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~-----------~~ 133 (454) +.+-|..+- ....+..++.+. -...+-.+|.+.++...+.+|.+++++-....|. -- T Consensus 81 vfrk~p~~~-----------~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~ade~~~~~rP 149 (489) T protein:vir:78 81 VMRKEPEIN-----------IPKELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETGAATAAEQNAGLLNP 149 (489) T ss_pred hhcCCccee-----------ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeeCCCCCcCHHHHHHhcCCc Confidence 555554331 111233344333 3457889999999999999999999987654431 01 Q ss_pred EEEEecCcceEEEECC--CCc--------------------------eeeEEecc--------------cccc-ccceeE Q lcl|Aclame:pro 134 ELRILDWNRVEPLVAD--DGE--------------------------VFYRITPD--------------RNCG-ITEAVT 170 (454) Q Consensus 134 ~l~~l~~~~~~~~~~~--~g~--------------------------~~~~~~~~--------------~~~~-~~~~~~ 170 (454) .+..+.|..|--+... +|. ..|++... .... ...... T Consensus 150 y~~~~~~~~IinW~~~~v~G~~~Lt~v~lrE~~~~~d~~~~f~~~~~~q~RvL~~~~~g~~~~~~~r~~~~g~~~~~~~~ 229 (489) T protein:vir:78 150 TIAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYNEPGNEFETKYGEQYRVLDIDSDGNYRQRLFRFDAEGGAQEDVVE 229 (489) T ss_pred EEEEechhhhcCceeeeeCCccceeEEEEEEeEEeecCCCCccceeEEEEEEEecCCCcceEEEEEEeecCCcccceeeE Confidence 2334444443211110 010 00111000 0000 000000 Q ss_pred Ee------hhheE---EeecCCCcCcccccchhhhh-HhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH Q lcl|Aclame:pro 171 VP------AREVI---HDRFNCFFHPLIGLPPVYAA-GLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) Q Consensus 171 ~~------~~~vi---h~~~~~~~~~~~G~s~l~~~-~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~ 240 (454) +. .-.+| .+- ....+...|.||+..+ .-.+..+.....+... +...+.|..+++-....+++..+... T Consensus 230 ~~~~~g~~~l~~IPfv~~~-~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~-l~~~~~P~l~i~G~d~~~~~~~~~~~ 307 (489) T protein:vir:78 230 IYPDLGESLRGVIPFTFIG-ATNNDATIDDAPLLPLAELNIGHYRNSADNEES-SFVVGQPTLFIYPGENLTPQAFKEAN 307 (489) T ss_pred EeccCCCCccCeeeEEEEe-cCCCCCCCCcCchHHHHHHHHHHhhhhhHHHHH-HHHcccceeeeecCccCCcccccccC Confidence 10 00111 111 1233445678887654 4455555555555444 45556788777643434433322221 Q ss_pred HHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQC 320 (454) Q Consensus 241 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~ 320 (454) . ....-|.+ ..+.++.+.++.-+..+...+. .+..+....+.+ ..| ..++.- ...-.++..........+. T Consensus 308 ~--~~i~~g~~--~~~~lp~~~~~~~ie~~~~~~~-r~~l~~le~qm~-~lG--a~l~~~-~~~~Ta~~~~~~~~~~~S~ 378 (489) T protein:vir:78 308 P--NGIKFGSR--RGHNLGYGGSAQLIQAGENNLA-RQNMLDKEQQAI-QIG--AQLITP-TQQITAQSARIQRGADTSV 378 (489) T ss_pred c--cceeeCCc--ccccCCCCCCcceeccCcchHH-HHHHHHHHHHHH-HHh--hhhccC-CcchhHHHHHHHHHHhhHH Confidence 1 01112333 3466666555444443333322 121222222221 111 122211 1111122333334445677 Q ss_pred HHHHHHHHHHHHHHhhc------C-cccc--eeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCC-cc Q lcl|Aclame:pro 321 LQTLIESIELLLDEALE------T-GENE--STEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAG-GD 390 (454) Q Consensus 321 i~P~~~~ie~~l~~~l~------~-~~~~--~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~-~d 390 (454) |.-++..+++.+++.|- . .... .+..+.+-....-.......+..+++.|.++....++.+-.-.+.+ .+ T Consensus 379 L~~~a~~~e~al~~~l~~~a~w~G~~~~~~~~i~~n~dF~~~~~d~~~~~al~~~~~~G~is~~t~~~~L~~~gv~d~~~ 458 (489) T protein:vir:78 379 MATIARNVSQAYTDALRWVAVMLGKPEDTEVEFRLNMDFFLEPMTAQDRAAWMADINAGLLPATAYYAALRKAGVTDWTD 458 (489) T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccCcccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccH Confidence 78888889998887651 1 1122 3333443322222233567778889999999888877654322211 11 Q ss_pred ccccccccccccccccccccccCCCccCcccCCCCCCcccCccc Q lcl|Aclame:pro 391 ALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNK 434 (454) Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 434 (454) +.. .. ...+. +.+.+...+.+.++...+.++ T Consensus 459 e~~--------~~----ei~~~-~~~~~~~~~g~~~~~~q~~~~ 489 (489) T protein:vir:78 459 ADI--------KD----AVADQ-PLPVATEVQGEIPQSAQQQEK 489 (489) T ss_pred HHH--------HH----HHhhc-CCCcccCCcccCCCCcccccC Confidence 100 00 00000 001111111112222222211 No 243 >protein:vir:78696 Length: 542 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285446;genbank:gi:148724480;genbank:GeneID:5220167 Probab=81.58 E-value=0.084 Score=26.47 Aligned_cols=405 Identities=10% Similarity=0.023 Sum_probs=152.1 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCcccc-HHHHHhhHHHHHHHHHHHHhhc------ccceE- Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKAD-PEAVLSFHAVFACISLISQDIA------KMRLR- 72 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~i~~ia~~va------~~~~~- 72 (454) |=..+++....-+..+..-..-|.....+... ..........-+ ..... .++-..|++.+|..+. +-||- T Consensus 1 mk~~a~~r~~~l~~~R~~~e~~w~e~~~y~lP-~~~~~~~~~~~~~~~~~~-dstg~~a~~~Laa~l~~~ltpp~~~WF~ 78 (542) T protein:vir:78 1 MKGLAQARYSAMRADREDFLDMARRCAALTLP-YLLTEDGHASGGRLQQPY-QSLGSKGVNALSSKLMLSLFPIQTSFFK 78 (542) T ss_pred ChhHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-ccCCCCCCcccccccccc-cchHHHHHHHHHHHHHHhhcCCCCcccc Confidence 44433322111111111111222222222211 100000000000 00111 2333456666655553 23442 Q ss_pred EEecccc-----cccee----hh------hhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEE Q lcl|Aclame:pro 73 LMQTDAQ-----GIRRE----TR------RGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRI 137 (454) Q Consensus 73 ~~~~~~~-----~~~~~----~~------~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~ 137 (454) +...+.. +...+ .. +..+...+..- +++.=+..++.++..+|++++++-.+ +...+| T Consensus 79 l~~~d~~l~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~s----nf~~~~~~~~~~L~~~G~a~l~~~~~----~~~~~p 150 (542) T protein:vir:78 79 LQINDAEIASVPELTPEVRSEIDMNLSKMEKMVMQQIAES----SDRVQLTAAMKHLIVTGNVLVFAGKK----TLKVYP 150 (542) T ss_pred ccCCHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhhCeEEEEecCC----CceEEe Confidence 2111100 00000 00 11112222222 44555677788899999999886432 234455 Q ss_pred ecCcceEEEECCCCceeeEE------------------------------------------------------------ Q lcl|Aclame:pro 138 LDWNRVEPLVADDGEVFYRI------------------------------------------------------------ 157 (454) Q Consensus 138 l~~~~~~~~~~~~g~~~~~~------------------------------------------------------------ 157 (454) |. .+.+..+..|.+--.| T Consensus 151 l~--~y~v~~d~~G~vd~v~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~~v~~~v~pr~~~~~~~~~~~~~~~~ 228 (542) T protein:vir:78 151 LD--RYVIERDGDGNVIEIITRELVDRSLLPAEFQKQSLLEGKDSNAVGEDGPKFGVAQGKGGRNDAEVFTCCKLVDGQH 228 (542) T ss_pred cc--eeEEeeCCCCCeEEEeeeeecCHHHHHHhhccccCchHHHhhccccCCCeEEEEEEeecccCCccccccccCCCeE Confidence 53 3444444444211100 Q ss_pred --ecc--ccccc--cceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccC Q lcl|Aclame:pro 158 --TPD--RNCGI--TEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI 231 (454) Q Consensus 158 --~~~--~~~~~--~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~ 231 (454) +.. ..... .....|.....+..|.....+..||.||.+.+...+.......+.......-...|.+.+.-+... T Consensus 229 s~~~e~~g~~v~~~~~e~g~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~pp~lv~~~g~~ 308 (542) T protein:vir:78 229 RWHQECDGKEIKGSRSSSPLKHSPWLPLRFNVVDGESYGRGRVEEFFGDLSSLDALTRSLIEGSAAAAKVVFMVSPSATT 308 (542) T ss_pred EEEEEeccccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecccccc Confidence 000 00000 001122233445556666667789999999999999999999999999998888888665333222 Q ss_pred CHHHHHHHHHHHHHHhcCcccCCceec--CCCceeeeccccchhhH-HHHHHHHHHHHHHHHhccchhhhcccccccccC Q lcl|Aclame:pro 232 TEENAKKLKSNWDSGYTGENAGKTAIL--SNGAKYNPTTFSPVDSQ-TVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDN 308 (454) Q Consensus 232 s~e~~~~~~~~~~~~~~g~n~g~~~vl--~~g~~~~~l~~~~~d~~-~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n 308 (454) ... +...+.+ | .++. ++++...++... .+.+ ..+..+.....|..+|-+- ...++..-| T Consensus 309 ~~~----------~~~~~~~-g-~iv~g~~~~v~~~~~~~~-~~~~~~~~~i~~~~~rI~~aFl~~-----~~~d~~rvT 370 (542) T protein:vir:78 309 KPQ----------SLARAGT-G-AIIQGRAEDVSVVQANKG-ADFRTVQEMIRDLSQRISDAFLIL-----NVRQSERTT 370 (542) T ss_pred chh----------hcccCCC-c-eeecCCccceeeeecccc-cchhHHHHHHHHHHHHHHHHhccc-----ccCCccccc Confidence 211 1111211 1 1222 233344444433 3343 3555688888888888432 222222334 Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHhh-------------cCcc-cceeeecchhhhh-----cCHHHHHHHHHHHH Q lcl|Aclame:pro 309 VEALEQ--QYYSQCLQTLIESIELLLDEAL-------------ETGE-NESTEFDVTTLLR-----MDSERRMKTLGDAV 367 (454) Q Consensus 309 ~e~~~~--~~~~~~i~P~~~~ie~~l~~~l-------------~~~~-~~~~~f~~~~l~~-----~d~~~~~~~~~~~~ 367 (454) +++.+. .-....+.|....++.+|-.-| +++. ..-++..+...+. .+.......+..+- T Consensus 371 AtEV~~r~~E~~~~LG~v~~rl~~E~L~Pli~R~~~il~r~g~lP~~p~~lv~~~~~s~La~~~r~~~~~~l~~~~~~i~ 450 (542) T protein:vir:78 371 ATEVREVQMELDRQLSGIYGSLTVELLTPYLNRKLHLMQRSKQLPSLPKGLVMPTVVAGLGGVGRGEDRAALIEFMQTVG 450 (542) T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhceeeeeechHHHHHHHHHHHHHHHHHHHHH Confidence 444332 2234456666666655443212 2221 1123333333221 11121222222111 Q ss_pred hC-C------CcCHHH----HHHHhcCCC---CCCccccccc------ccccc--cccccccc--ccccCCCccCcccCC Q lcl|Aclame:pro 368 KN-T------LLTPNE----ARKRENLPP---LAGGDALYLQ------QQNYS--LEALSRRD--AREDPFASSGKTASV 423 (454) Q Consensus 368 ~~-g------~~T~NE----~R~~~g~~p---~~~~d~~~~~------~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~ 423 (454) +. | .+..++ +.+.+|.|+ +...++.-.. ...+. +...+... .............+. T Consensus 451 ~~~~p~~l~~~id~d~~~~~~a~~~Gvp~~~i~~s~e~~~~~~~q~q~~~~~~al~~~a~~~a~~~~~~~~~~~~~a~~~ 530 (542) T protein:vir:78 451 QAMGPEALQQFIDPTEFLKRLAAASGIDTLNLVKSPETMANEAQQAQQQQMTASLMGQAGQLAKSPIGEKMMQQINAPGQ 530 (542) T ss_pred HhcCChhHHhcCCHHHHHHHHHHHcCCCHhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhcCCCCc Confidence 10 1 122222 233456653 1111110000 00000 00000000 000000000000000 Q ss_pred CCCCcccCcccc Q lcl|Aclame:pro 424 PQAVAASDGNKA 435 (454) Q Consensus 424 ~~~~~~~d~~~~ 435 (454) .+++....|+.- T Consensus 531 ~~~~~~~~~~~~ 542 (542) T protein:vir:78 531 EAPAGPQTGEDL 542 (542) T ss_pred CCCCCCcccccC Confidence 011111111111 No 244 >protein:vir:97376 Length: 320 # NCBI annotation: putative portal protein # Family: family:all:11744 # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762589;genbank:gi:115304290;genbank:GeneID:5130579 Probab=80.46 E-value=0.095 Score=26.20 Aligned_cols=311 Identities=15% Similarity=0.142 Sum_probs=133.6 Q ss_pred Ccchhhhhcccccc-ccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEecccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQKS-GRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) Q Consensus 1 m~n~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~~~~~ 79 (454) +||+=+|---.+.. ....+.-...+ .+||.+...- .+-+-+|+.+|.. +-.|+... T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----------------~~~~~~~~~~~~~-~~~~~~~~- 59 (320) T protein:vir:97 3 IFNFKKRETLTPELKESIIRQVTIED-----ESPFTGTTDF----------------NVRNEVAESIATY-LGAYKTSA- 59 (320) T ss_pred ccccccccccChhHHhhhhheeeecc-----CCCccccccc----------------chhhHHHHHHHHH-hhhhcccc- Confidence 77743332211111 11111111111 1122222111 1112222222211 01121111 Q ss_pred ccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEe-cCcceEEEECCCCceeeEEe Q lcl|Aclame:pro 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRIL-DWNRVEPLVADDGEVFYRIT 158 (454) Q Consensus 80 ~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l-~~~~~~~~~~~~g~~~~~~~ 158 (454) ..+.++-.+ ..|++.++.|.|..-..|++..... | |.+ +.-++...+. ...++ T Consensus 60 --------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~-----~~~~~ 113 (320) T protein:vir:97 60 --------KRLSLLTNN-------PSFLRRLVKHALHNKTTYVYKSPTY-G-----WLITDSMTIEGLRA-----RLTFT 113 (320) T ss_pred --------ceeeeeeCC-------HHHHHHHHHHhhcccceEEeeCCcc-c-----eeeecceeeeeeee-----eEEEe Confidence 011122222 2589999999998888888864321 2 222 2222221111 11111 Q ss_pred ccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCC-HHHHH Q lcl|Aclame:pro 159 PDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSIT-EENAK 237 (454) Q Consensus 159 ~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s-~e~~~ 237 (454) -+.....-....++..|+ .-..++.+|.-+-.. . .....+....-+-+.|.+....+++.+.+.. +|-.+ T Consensus 114 ~~D~FN~~V~mtvpfyD~-----~ILdnpl~gv~tqe~-g---kM~g~a~~~v~kkL~~~~~IKafi~Tdid~GLee~kD 184 (320) T protein:vir:97 114 LPDPFNSAVTMTVPFYDV-----GIIDSPLVEVDTEEA-N---KMLEAAYSAVMKKLHNTGAIKAFISSDIDVGLEKMKE 184 (320) T ss_pred cCcccceeEEEEeeeech-----hhhhhhhcccChHHh-h---HHHHHHhhhhhhhccccceeEEEEecccchhHHHHHH Confidence 111111111222222221 122344566655321 1 1222333444555777777888887766533 55566 Q ss_pred HHHHHHHHHhcCcc-cCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHH Q lcl|Aclame:pro 238 KLKSNWDSGYTGEN-AGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQY 316 (454) Q Consensus 238 ~~~~~~~~~~~g~n-~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~ 316 (454) +...+++++..-.+ -.+.-+++.|-+++++.-...-.. ..-....+...+.-|+||..+|-+..+ +.+..+| T Consensus 185 ~~~~kIk~mq~~A~~~nG~T~i~~~dDI~Qi~pDYS~sn-~~D~~l~~t~alS~y~m~~~IL~GsAt------e~~~Iaf 257 (320) T protein:vir:97 185 ESDSKIKAMLATAELLSGYTYIQRGDDVTQMMPDYTTSN-VTDFAAMRTFAASQLSVSDKILDGSAT------DGEKVAV 257 (320) T ss_pred HHHHHHHHHHHHHHHhcCcccccCCcceeeecccccccc-hhHHHHHHHHHHhhcCCchhhccccCC------cceeeeh Confidence 67777776653222 345778888888888764333221 122345566778999999998855433 6777889 Q ss_pred HHHHHHHHHHHHHH---HHHHhhcCcccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhcCCCCCCccccc Q lcl|Aclame:pro 317 YSQCLQTLIESIEL---LLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALY 393 (454) Q Consensus 317 ~~~~i~P~~~~ie~---~l~~~l~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~d~~~ 393 (454) +.+.|.|+++++.+ .|..++-. +|.+.-+ . + .|-+..|.+-. -|.+..|. T Consensus 258 ~~~~V~PLL~Q~~~~Ek~Lvy~m~~------E~FVs~m-t-----------T---GG~l~S~~~~~-~~~~~~~~----- 310 (320) T protein:vir:97 258 MFRFVEPILEQFREYEPSLIYAMRD------EFFVSFM-T-----------T---GGMLNSNRVDG-WGKEKAPN----- 310 (320) T ss_pred hhHhHHHHHHHhhhcCcceeeeecc------ceeeeee-e-----------c---Cceeecccccc-cccccCCc----- Confidence 99999999999743 32222110 1111100 0 0 33333333210 01111110 Q ss_pred cccccccccccccc Q lcl|Aclame:pro 394 LQQQNYSLEALSRR 407 (454) Q Consensus 394 ~~~~~~~~~~~~~~ 407 (454) -..-++.++. T Consensus 311 ----~~~~~~~~~~ 320 (320) T protein:vir:97 311 ----ESKGGDVGDV 320 (320) T ss_pred ----cccCCcccCC Confidence 0000000000 No 245 >protein:vir:103765 Length: 549 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024925;genbank:gi:48697195;genbank:GeneID:2846089 Probab=73.04 E-value=0.18 Score=24.73 Aligned_cols=415 Identities=11% Similarity=-0.000 Sum_probs=154.7 Q ss_pred Ccchhhh-------hccccccccccCcccchhhhhhhhhhcccccc---CCccccHHHH---HhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MWNLLRR-------TRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQ---QGVKADPEAV---LSFHAVFACISLISQDIA 67 (454) Q Consensus 1 m~n~f~r-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~v~~~i~~ia~~va 67 (454) |-+==.+ ....-+.....-..-|.....+.. |..+... .+.....+.. .=.++-..|++.+|..+- T Consensus 1 m~~d~~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~l-P~~~~~~~~~~~~~~~~~~~~~~~~dstg~~a~~~LAs~l~ 79 (549) T protein:vir:10 1 MTNDDAKILQALNADHGRMKEKRQSYEAVWNDVIDYLM-PRLDKFGQLPRPDSEKGRERSQKMFDSTAPLALRNFVAAMD 79 (549) T ss_pred CCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc-cccccccccCCCCCCcccccccccccchHHHHHHHHHHHHH Confidence 4441111 000000011111112222222111 1100000 0000000000 112333455555554442 Q ss_pred ------ccce-EEEeccccccceehhhhHHH----Hhhhhcc-ccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEE Q lcl|Aclame:pro 68 ------KMRL-RLMQTDAQGIRRETRRGDIA----RLCRRPN-AQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKEL 135 (454) Q Consensus 68 ------~~~~-~~~~~~~~~~~~~~~~~~~~----~l~~~pn-~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l 135 (454) +-|| ++................+. .+...-+ ..-+.+.-+..++.|+.++|++.+++..+. +....+ T Consensus 80 ~~ltpp~~~wF~l~~~~~~~~e~~~v~~~l~~ve~~~~~~~~~~~snf~~~~~~~~~~L~~~Gta~l~~~~~~-~~~~~f 158 (549) T protein:vir:10 80 SMITPATQLWHRLKTGNDALNEIASVKAYLQGVVRTLFAARYRWQGGFVTQMGATYQSIGLFGPGALMIEHDV-GKGIVY 158 (549) T ss_pred hhccCCCCccccccCCccchhhhhHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHhhcceeeEEeecC-CCeeEE Confidence 2243 22211111111000001111 1111001 112344556677888999999999886543 345566 Q ss_pred EEecCcceEEEECCCCceeeEEe----------------------------------------cccccc-----ccc--- Q lcl|Aclame:pro 136 RILDWNRVEPLVADDGEVFYRIT----------------------------------------PDRNCG-----ITE--- 167 (454) Q Consensus 136 ~~l~~~~~~~~~~~~g~~~~~~~----------------------------------------~~~~~~-----~~~--- 167 (454) ..++...+.+..|..|.+--.|. ..+... .+. T Consensus 159 ~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~~~v~~~V~pr~~~~~~~~~~~~~p 238 (549) T protein:vir:10 159 RNVPMQRLWFAENNSGLIDKTHVQWELTLRQAAQRFGRENLSPSMQSTLEKDPEKSAIFYHAVEPRADRDPRKLDGRNMQ 238 (549) T ss_pred EEEEcCeEEEeeCCCCCeEEEEEEeecCHHHHHHhcCcccCCHHHHHHhhcCCCceEEEEEEeecCCCCCccccccccCc Confidence 66666777777776665321110 000000 000 Q ss_pred --eeE-------------EehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCC Q lcl|Aclame:pro 168 --AVT-------------VPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSIT 232 (454) Q Consensus 168 --~~~-------------~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s 232 (454) .+. |..-..+..|.....+..||.||.+.+...+.......+.......-...|.+.+.-+.... T Consensus 239 f~sv~~e~~~~~il~esg~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~~v~~~g~~~ 318 (549) T protein:vir:10 239 FASYWLDEGRDRIVQNSGFRTFPFAIGRFYVGTDDVYGGSPAYDAMPDVRMANDMAKTNIRGAQKLVDPPLLANEDGVLD 318 (549) T ss_pred eEEEEEEecCCEeeccCCcccCCcceeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccccc Confidence 000 11111233444445567899999999999999999999999999888888887753333222 Q ss_pred HHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHH-HHHHHHHHHHHHHHhccchh-hhcccccccccCHH Q lcl|Aclame:pro 233 EENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQT-VEQLKMTAEIVCSVFRVPAY-KIGVGQPPSSDNVE 310 (454) Q Consensus 233 ~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~-~e~~~~~~~~Ia~~fgvp~~-~lg~~~~~~~~n~e 310 (454) ..+ ...|........-.+...++|+.... +.+. .+..+.....|..+|-+... ++-..+ .-|++ T Consensus 319 ~~~----------l~pgg~~~~~~~~~~~~~~~pl~~~~-~~~~~~~~i~~~~~rI~~af~~d~~~~~~~~~---~~TAt 384 (549) T protein:vir:10 319 GFD----------LRSGALNWGGLNDKGEEMVKPLLTGK-QAQIGIEFAQDTRQTINQWFYVTLFQILVDSG---DMTAT 384 (549) T ss_pred cce----------eccCCccccccCCCCccceeeecccc-chhHHHHHHHHHHHHHHHHHhhhhhhhhcCCC---CccHH Confidence 111 11121111111122345677776543 4333 34468888899999977653 221222 22333 Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHH------------H-hhcCc-------ccceeeecchhhhhc-----CHHHHHHHH Q lcl|Aclame:pro 311 ALE--QQYYSQCLQTLIESIELLLD------------E-ALETG-------ENESTEFDVTTLLRM-----DSERRMKTL 363 (454) Q Consensus 311 ~~~--~~~~~~~i~P~~~~ie~~l~------------~-~l~~~-------~~~~~~f~~~~l~~~-----d~~~~~~~~ 363 (454) +.+ ..-....+.|....+..+|- + -++++ .+..+.+.+-+.+.. +.......+ T Consensus 385 EV~~r~~E~~~~LGpv~~rl~~E~l~Pli~R~~~il~r~g~lP~~p~~l~~~~~~~~i~yis~La~aq~~~~~~~i~~~~ 464 (549) T protein:vir:10 385 EVLQRAQEKGVLLAPTLGRTQSELLGPMIAREVDILAEAGQLPDMPQELIDAGADVDVEYDSPLNKAMRAGEGAAILQWL 464 (549) T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhcCCceeEEEeecHHHHHHHHHHHHHHHHHH Confidence 322 22233445555555554432 2 11232 112233333332221 111111111 Q ss_pred H---HHHhCC-----CcCHHH----HHHHhcCCCC---CCcccccccc--ccccccccccccccccCCCccCcccCCCCC Q lcl|Aclame:pro 364 G---DAVKNT-----LLTPNE----ARKRENLPPL---AGGDALYLQQ--QNYSLEALSRRDAREDPFASSGKTASVPQA 426 (454) Q Consensus 364 ~---~~~~~g-----~~T~NE----~R~~~g~~p~---~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (454) . .+-+.+ .+..++ +-+.+|.|+. ++.+.--+.. ..+.... ......+. ..+..++.....+ T Consensus 465 ~~~~~laq~~Pe~ld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~~~~~qqq~~-~~~~~a~~-a~~~a~~~~~~~t 542 (549) T protein:vir:10 465 QQLGIVSQFDPAAAKVPNGARIARLLADYGGVPVEAMSTDEELQAQQAAEAQAAQMQ-QMLAAAPV-AAGAIKDLSDAQT 542 (549) T ss_pred HHHHHHhccChhHHhcCCHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHhhhhhcC Confidence 1 111111 122222 2233444431 1100000000 0000000 00000000 0000000000000 Q ss_pred CcccCcccc Q lcl|Aclame:pro 427 VAASDGNKA 435 (454) Q Consensus 427 ~~~~d~~~~ 435 (454) .. ...+. T Consensus 543 a~--~~~~~ 549 (549) T protein:vir:10 543 AA--QTARV 549 (549) T ss_pred CC--cccCC Confidence 00 00000 No 246 >protein:vir:81017 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469501;genbank:gi:157311458;genbank:GeneID:5602316 Probab=72.13 E-value=0.19 Score=24.58 Aligned_cols=401 Identities=11% Similarity=0.085 Sum_probs=160.4 Q ss_pred Ccc-------hhhhhcccc-----ccccccCcc---cchhhhhh-hhhh---cccccc-----CCccc-------cHHHH Q lcl|Aclame:pro 1 MWN-------LLRRTRKNQ-----KSGRDVREA---GWTSLFQA-VAEP---FAGAWQ-----QGVKA-------DPEAV 49 (454) Q Consensus 1 m~n-------~f~r~~~~~-----~~~~~~~~~---~~~~~~~~-~~~~---~~~~~~-----~~~~~-------~~~~~ 49 (454) ||. ||+-..... ..+.++.++ +.....+. ...+ .++.+. .+... .-+.. T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~P~~~dGa~~i~~~~~~~~~~~gg~~~~~~~~e~~~~~~~eLI~~YR~m 80 (521) T protein:vir:81 1 MFSRLKMLARWADFDNDKYEEQIKDKAESIAAPKNNDGATEVEINDNLPASAWNSLTQQFYSTDQKISTTKQLVNTYRGL 80 (521) T ss_pred CcchhhhhHhhcCchhhhHHhhhccCccccccCCCCCCceEecccCCCcceeecceeeeecccccchhhHHHHHHHHHHH Confidence 443 332221110 111111111 11100000 0000 000000 01000 12445 Q ss_pred HhhHHHHHHHHHHHHhhccc-----ceEEEeccccccceehhhh---HHHHhhhhccccCCHHHHHHHHHHHHHHhCCeE Q lcl|Aclame:pro 50 LSFHAVFACISLISQDIAKM-----RLRLMQTDAQGIRRETRRG---DIARLCRRPNAQQNRIQFFELWLNAKLRHGNTV 121 (454) Q Consensus 50 ~~~~~v~~~i~~ia~~va~~-----~~~~~~~~~~~~~~~~~~~---~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~ 121 (454) +.+|.|..||+-|.+.+.-+ |..+.-. +..-....+.. ....+++--+.... -..++..|.+.|..| T Consensus 81 a~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~-~~~~s~~iK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi~ 155 (521) T protein:vir:81 81 MNNHEVENAVQNIVNDAIVFEEGHEVVSLNLE-ATGFSESVKERIHEEFKDLLNTIQFDRR----GQDMFRRWYVDSRIF 155 (521) T ss_pred hhccchhhHHHHhhcceeEecCCCceEEEEec-ccccchHHHHHHHHHHHHHHHHhccchh----hhHHHhhhhhcceEE Confidence 67899999999998777533 2222110 10000011111 11112222222233 345566688899999 Q ss_pred EEEeeCCC--CceeEEEEecCcceEEEECC-----CC------ceeeEEeccc---------cccccceeEEehhheEEe Q lcl|Aclame:pro 122 VLKIRNAR--GQIKELRILDWNRVEPLVAD-----DG------EVFYRITPDR---------NCGITEAVTVPAREVIHD 179 (454) Q Consensus 122 i~~~r~~~--G~~~~l~~l~~~~~~~~~~~-----~g------~~~~~~~~~~---------~~~~~~~~~~~~~~vih~ 179 (454) ..++-+.+ .-..+|..|+|-.++..+.- .+ ..-|+++... ....+..+.++.+- |++ T Consensus 156 fhkiid~~pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~vkI~~dA-I~y 234 (521) T protein:vir:81 156 FHKIIGKNPKDGIVELRQLDPRNLEYVREIITEDTPEGKIYKATKEYFIYTVGNSSYCAGGQVFSPNSRVKIPRSA-ITY 234 (521) T ss_pred EEEEEcCCccccceeeeeeCCcceeeeeeecccccCccceecceeeeeeeecCCccccccceeecCCcceeechhh-eee Confidence 99885443 44889999999998876432 11 1112221111 01112334555443 444 Q ss_pred ecCC--CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCcc-CCHHHHHH----HHHHHHHHh----- Q lcl|Aclame:pro 180 RFNC--FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGS-ITEENAKK----LKSNWDSGY----- 247 (454) Q Consensus 180 ~~~~--~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~-~s~e~~~~----~~~~~~~~~----- 247 (454) -+.. +.++-.-+|-|..+...+....-++...-=+--..+.-+-|+-++-+ +-...+++ +..++++.+ T Consensus 235 ~hSGl~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~~im~k~kNklvYDa~ 314 (521) T protein:vir:81 235 AHSGLMDCDDKYIIGYLHRAVKPANQLKLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDAS 314 (521) T ss_pred eeccceeCCCCeeeecchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeecc Confidence 3321 11222335666666666665555555544443344444555555533 22223333 334444321 Q ss_pred cCc--ccCCc-ee-----cC-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccccc----ccC-H Q lcl|Aclame:pro 248 TGE--NAGKT-AI-----LS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPS----SDN-V 309 (454) Q Consensus 248 ~g~--n~g~~-~v-----l~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~----~~n-~ 309 (454) .|. +..+. .. |+ .|.+++.|.-... +.-++-..+..+.+.++++||.+-++..+.+. .++ + T Consensus 315 TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EI 393 (521) T protein:vir:81 315 TGKLKNQQANLSMTEDYWLQRRDGKAITDVTTLPGASG-MSDIDDIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEI 393 (521) T ss_pred cccccccccccchhhhhcccccCCCcccceeecccCCC-CChHHHHHHHHHHHHHHhCCccccccCCCCcceeccccchh Confidence 221 11121 12 22 3567777654222 23344567888899999999999996443322 222 2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------ccc-----ceeeec--chhhh----h-cCHHHHHHHHHHHHh Q lcl|Aclame:pro 310 EALEQQYYSQCLQTLIESIELLLDEALET---------GEN-----ESTEFD--VTTLL----R-MDSERRMKTLGDAVK 368 (454) Q Consensus 310 e~~~~~~~~~~i~P~~~~ie~~l~~~l~~---------~~~-----~~~~f~--~~~l~----~-~d~~~~~~~~~~~~~ 368 (454) .-....|.+ .|.-+..++...|...|-+ +.. ..+.|+ .|.-. . .-...+++.+..+-. T Consensus 394 tRDEiKF~K-FI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dp 472 (521) T protein:vir:81 394 TRDELEFSK-FIRTRQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITP 472 (521) T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhhh Confidence 222333333 3455666665555543321 111 123333 33211 1 111223333333322 Q ss_pred -CC-CcCHHHHHH-HhcCCCC--CCccccc---cccccccccccccccccccCCCcc Q lcl|Aclame:pro 369 -NT-LLTPNEARK-RENLPPL--AGGDALY---LQQQNYSLEALSRRDAREDPFASS 417 (454) Q Consensus 369 -~g-~~T~NE~R~-~~g~~p~--~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 417 (454) .| .++.+=+++ .|.+.-. ...++.. ...... ..++..-..- T Consensus 473 yvGky~s~dyi~k~ILr~tDeei~~~~k~I~~E~~~~~~--------~~p~~~~~~f 521 (521) T protein:vir:81 473 YIGKYFSNQTVMRDILKYTDDQMDTEKKQIEEEANDPRF--------KQTPDEIEDF 521 (521) T ss_pred hhccccchHHHHHHHhccCHHHHHHHHHHHHHHhhCCCC--------CCCcccccCC Confidence 12 223333332 2333210 0000000 000000 0000000000 No 247 >protein:vir:6896 Length: 523 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861872;genbank:gi:32453663;genbank:GeneID:1494298 Probab=70.18 E-value=0.21 Score=24.27 Aligned_cols=405 Identities=12% Similarity=0.089 Sum_probs=162.9 Q ss_pred Ccchhhhhccccc---------cccc---cCcccchhhhh-hhhhh---cccc------ccCCccc-------cHHHHHh Q lcl|Aclame:pro 1 MWNLLRRTRKNQK---------SGRD---VREAGWTSLFQ-AVAEP---FAGA------WQQGVKA-------DPEAVLS 51 (454) Q Consensus 1 m~n~f~r~~~~~~---------~~~~---~~~~~~~~~~~-~~~~~---~~~~------~~~~~~~-------~~~~~~~ 51 (454) |+.+|+.+.+... ...+ ....+...... ....+ +.+. ...+... .-+..+. T Consensus 5 ~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~dDGa~~i~~~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR~ma~ 84 (523) T protein:vir:68 5 ILSLFAPWAKMDERDYKDQEKENLESITSPKLDDGAKEYEVSENEAQQTYNAMFQRMFGSQEPGLKSTRELIDTYRNLMT 84 (523) T ss_pred hhhhhhhhhhhhhhhhhhhhhccCCCccccCCCCcceeeeccccccccccchhhhhhhhccccccchHHHHHHHHHHHhh Confidence 6677765543211 1111 11111100000 00000 0000 0001001 1244567 Q ss_pred hHHHHHHHHHHHHhhcccc-----eEEEeccccccceehhhh---HHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEE Q lcl|Aclame:pro 52 FHAVFACISLISQDIAKMR-----LRLMQTDAQGIRRETRRG---DIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVL 123 (454) Q Consensus 52 ~~~v~~~i~~ia~~va~~~-----~~~~~~~~~~~~~~~~~~---~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~ 123 (454) +|.|..||+-|.+.+.-+. ..+.- +...-....+.. ....+++--+.... -..++..|.+.|..|.. T Consensus 85 ~pEvd~Av~eIVneaiv~d~~~~pV~i~L-d~~~~s~~iK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi~fh 159 (523) T protein:vir:68 85 NYEVDNAVSEIVSDAIVYEDDTEVVSINL-DNTKFSPNIKSMMLDEFNEVLNHLSFQRK----GSDHFRRWYVDSRIFFH 159 (523) T ss_pred ccchhhHHHHhhcceeeecCCCceEEEEe-cccccchHHHHHHHHHHHHHHHHhccchh----hhHHHHhheeeeEEEEE Confidence 8999999999987775432 22211 010000011111 11122222222333 34456668889999988 Q ss_pred EeeCCC---CceeEEEEecCcceEEEEC-----CCCc------e-eeEEecccc--------ccccceeEEehhheEEee Q lcl|Aclame:pro 124 KIRNAR---GQIKELRILDWNRVEPLVA-----DDGE------V-FYRITPDRN--------CGITEAVTVPAREVIHDR 180 (454) Q Consensus 124 ~~r~~~---G~~~~l~~l~~~~~~~~~~-----~~g~------~-~~~~~~~~~--------~~~~~~~~~~~~~vih~~ 180 (454) ++-+.+ .-..+|..|+|-.++.++. ..|. . .|.|..... ...+..+.++.+-|.|.- T Consensus 160 Kiid~k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~g~~vi~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~y~h 239 (523) T protein:vir:68 160 KIIDPKRPKEGIKELRRLDPRQVQYVREVITTTEAGVKIVKGYKEYFIYDTSHESYACDGRIYEAGTKIKIPKAAIVYAH 239 (523) T ss_pred EEeeCCCccccceeeeeeCCcceeEEEeecCCCCcchhhhhhhhhheeeccccccccccccccCCCcceecchhheeeee Confidence 865532 2488999999999876432 2221 1 122211110 111244566655544433 Q ss_pred cC-CCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccC-CHHHHHHHH----HHHHHHh-----cC Q lcl|Aclame:pro 181 FN-CFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI-TEENAKKLK----SNWDSGY-----TG 249 (454) Q Consensus 181 ~~-~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~-s~e~~~~~~----~~~~~~~-----~g 249 (454) .+ -+.++-.-+|-|..+...+....-++...-=+--..+.-+-|+-++-+. -...+++.. .++++.+ .| T Consensus 240 SGL~d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNKlvYDa~TG 319 (523) T protein:vir:68 240 SGLVDCCGKNIIGYLHRAIKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPSRKAAEHMQHVMNTMKNRIAYDATTG 319 (523) T ss_pred ccceeCCCCceeccchhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhhcceeEEeccCC Confidence 22 1122223456666666666555555555444434444445555555332 223333333 3333322 22 Q ss_pred --cccCCce-e-----cC-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccc-ccc--ccC-HHHH Q lcl|Aclame:pro 250 --ENAGKTA-I-----LS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQ-PPS--SDN-VEAL 312 (454) Q Consensus 250 --~n~g~~~-v-----l~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~-~~~--~~n-~e~~ 312 (454) .+..+.+ . |+ .|.+++.|.-... +.-++-..+..+.+.++++||.+-|.... ..+ .++ +.-. T Consensus 320 ev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~EItRD 398 (523) T protein:vir:68 320 KIKNQQHIMSMTEDYWLQRRDGKAVTEVDTLPGADN-TGNMEDVRWFRNALYMALRIPITRIPSDQGGIQFDAGTSITRD 398 (523) T ss_pred eeccchhhhhhHhhhcccccCCCcccceeeccccCC-cChHHHHHHHHHHHHHHhCCcceeecCCCcceecccccchhHH Confidence 1111221 2 22 3567777654322 23345567888899999999999885432 223 222 2222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC---------ccc-----ceeeec--chhhh----h-cCHHHHHHHHHHHHh-CC Q lcl|Aclame:pro 313 EQQYYSQCLQTLIESIELLLDEALET---------GEN-----ESTEFD--VTTLL----R-MDSERRMKTLGDAVK-NT 370 (454) Q Consensus 313 ~~~~~~~~i~P~~~~ie~~l~~~l~~---------~~~-----~~~~f~--~~~l~----~-~d~~~~~~~~~~~~~-~g 370 (454) ...|. ..|.-+..++...|...|-+ +.. ..++|+ .|.-. . .-...+++.+..+-. .| T Consensus 399 EikF~-KFI~rLR~rFs~lf~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvG 477 (523) T protein:vir:68 399 ELSFG-KFIRELQHKFEEIFLDPLKTNLILKGIITEDEWNDEINNIKIKFHRDSYFSELKDAEILERRINMLQMAEPFIG 477 (523) T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhc Confidence 23333 34555666666655544421 111 123333 33211 1 111223333333221 12 Q ss_pred -CcCHHHHHH-HhcCCCC--CCccccccccccccccccccccccccCCCcc Q lcl|Aclame:pro 371 -LLTPNEARK-RENLPPL--AGGDALYLQQQNYSLEALSRRDAREDPFASS 417 (454) Q Consensus 371 -~~T~NE~R~-~~g~~p~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (454) .++.+=+++ .|.+.-. ...+...-.- ... +-...++.....- T Consensus 478 ky~s~~yi~k~ILr~tDeei~~~~kqI~~E----~k~-~~~~~p~~e~~~f 523 (523) T protein:vir:68 478 KYISHRTAMKDILQMSDEEIEQEAKQIEEE----SKE-ARFQDPDQEQEDF 523 (523) T ss_pred ccchhHHHHHHHhccCHHHHHHHHHHHHHH----hhc-CCCCCCchhhhcC Confidence 223332332 2222210 0000000000 000 0000000000000 No 248 >protein:vir:94599 Length: 641 # NCBI annotation: PfWMP4_39 # Family: family:all:1548 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762669;genbank:gi:115304377;genbank:GeneID:5142299 Probab=67.86 E-value=0.25 Score=23.92 Aligned_cols=413 Identities=10% Similarity=0.021 Sum_probs=151.4 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhh-------hcccccc--CCccccHHHHHhhHHHHHHHHHHHHhhccc-- Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAE-------PFAGAWQ--QGVKADPEAVLSFHAVFACISLISQDIAKM-- 69 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~~v~~~i~~ia~~va~~-- 69 (454) +..++.+.++.-+..+..-..-|.+...+... ......+ .+...-.+.-+-.+++..+++.|+..+.+. T Consensus 25 ~~~~l~~~~~~~~~~R~~~e~~W~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ki~~~~~~~~~~~l~s~Lm~~~~ 104 (641) T protein:vir:94 25 IGGVVISKWQESRDKRNTVENNWDETYELYRASAIDRQNTRARNFQTTGADDADWRHRINTGHTFEVVETLVAYFKGATF 104 (641) T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhhcchhhhhhcccccccccccchhcccccccchhHHHHHHHHhhHHhhhhc Confidence 22333222222222223333345444322110 0000000 000000011234577888888887776653 Q ss_pred c---e-EEEeccccccceehhhhHH-HHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeC------------CCCce Q lcl|Aclame:pro 70 R---L-RLMQTDAQGIRRETRRGDI-ARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRN------------ARGQI 132 (454) Q Consensus 70 ~---~-~~~~~~~~~~~~~~~~~~~-~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~------------~~G~~ 132 (454) | | ++.....+..... ..+ ..++..-+ .-.+.+-.+.++.+.+.+|++++.+-+. +.|.+ T Consensus 105 p~~~wf~~~p~~~ed~~~A---~~~~~~~~~~l~-~~~~~~~~~~~~~d~~~~g~~iv~~~w~~~~~~~~~~~~~~~~~~ 180 (641) T protein:vir:94 105 PSDDWFDLKGMVPELADAA---RVVKQLTKTKLE-AASIRDIFETYVRNLVLYGVSTYRLGWDTSMERQFKRTFVETGDI 180 (641) T ss_pred CCCceEEEecCCCChHHHH---HHHHHHHHHHHh-hcchHHHHHHHHHHHhhcCceEEEeehhhHHHHhhhhhcccchhh Confidence 2 2 2222222211110 111 11222221 1234555668888999999998755321 11211 Q ss_pred ---------------eEEEEecCcceEEEECC----------------------CCc----------------------- Q lcl|Aclame:pro 133 ---------------KELRILDWNRVEPLVAD----------------------DGE----------------------- 152 (454) Q Consensus 133 ---------------~~l~~l~~~~~~~~~~~----------------------~g~----------------------- 152 (454) ..+.|++|..+-+.+.. .|. T Consensus 181 ~~~~~~~~v~~~~~~~r~~~v~~~di~~dps~~~~~~~f~~~r~t~~t~~~l~~eg~~~~d~v~~~~~~~~~~~~~d~~~ 260 (641) T protein:vir:94 181 FGGWEDVAVNRQRSELRIEPLSPYDVWLDTSGGKNTGTFVRLRHTREELHELVTSGYYDLDLTQVEQYVDYKFADPDTPK 260 (641) T ss_pred cccccccceecccceeeEEecchhheeecCCCCcccccceehhhhHHHHHHHHhcCCCChhhcchhhccccccccccccc Confidence 12344444333211000 000 Q ss_pred ----------eeeEEecccccc-----------ccce------e-EEehhheEEeecCCCcCcccccchhhhhHhHHHHH Q lcl|Aclame:pro 153 ----------VFYRITPDRNCG-----------ITEA------V-TVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQG 204 (454) Q Consensus 153 ----------~~~~~~~~~~~~-----------~~~~------~-~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~ 204 (454) ..+.|..+.... .+.. . .+.....++++.....+..||.||...+...+... T Consensus 261 d~~~~~~~~~~~~e~~gd~~~d~~~~~~~~~~~~g~~il~~~~~~~~d~~Pf~~~r~~~~~~~~YG~gp~~~~l~dqk~l 340 (641) T protein:vir:94 261 DVNGTDTSGWDIIEYYGPLLVEGVQFWCVHAVFYGKQLIRLSDSKYWCGSPFVTTTLLPDRDSVYGMSVLHPNLGALHVL 340 (641) T ss_pred ccccccccccceeeeeeeeccCCCceeeEEEEEeCCEEeecccccccCcCCeEEecceecCCcccCCChHHHHHHHHHHH Confidence 000000000000 0000 0 01112345555555667789999999999999999 Q ss_pred HHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhH-HHHHHHHH Q lcl|Aclame:pro 205 HHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQ-TVEQLKMT 283 (454) Q Consensus 205 ~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~-~~e~~~~~ 283 (454) +...+...........|..++..+....++.. . .+-|+++.......+.++.....+.+ .....+.. T Consensus 341 n~l~r~~ld~~~~~~~p~~~~~~~~~~~~~~l----------~--~~PG~ii~~~~~~~v~pl~~~~~~~~~~~~~~~~~ 408 (641) T protein:vir:94 341 NVLTNGRLDNLVLHINKMWTLVEDGILKREDV----------K--AKPGAVFKVAQHGSLQPIDMGRQDFVVTYQEAQVQ 408 (641) T ss_pred HHHHHHHHHHHHHHhCCeeeecccccccccee----------e--ccCCcceeeCCCCcceeecCCccccchhHHHHHHH Confidence 99999888877777777766544443333222 0 11334544444334555432211111 12233444 Q ss_pred HHHHHHHhccchhhhccc-ccccccCHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcC---------- Q lcl|Aclame:pro 284 AEIVCSVFRVPAYKIGVG-QPPSSDNVEALE--------------QQYYSQCLQTLIESIELLLDEALET---------- 338 (454) Q Consensus 284 ~~~Ia~~fgvp~~~lg~~-~~~~~~n~e~~~--------------~~~~~~~i~P~~~~ie~~l~~~l~~---------- 338 (454) ...|-.+|++.....|.. .++..-|+.+.. ..|....+.|++..+-..+.+.++. T Consensus 409 ~~~i~~~~~~~~~~~~~~~~~~~~~TAtEV~~~~~e~~~~l~~i~r~l~~e~l~pll~~~~~~~~~~~~~p~i~R~~~~~ 488 (641) T protein:vir:94 409 ESSVYRNTSTGPLIGNAAPRGGERVTAAEIQGVRDAGGNRLSSVHTHIEDSSTLPLLNKVFSLLQQFYVTPETIRMYVPE 488 (641) T ss_pred HHHHHHhhhhhhhhcccccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhchh Confidence 557778888886544332 222222333332 2344445555555544433333221 Q ss_pred ----------cccceeeecchhhhhcCHHHHHHHHHHH---HhC-CC-------cCHHHH-H---HHhcCCCCCCccccc Q lcl|Aclame:pro 339 ----------GENESTEFDVTTLLRMDSERRMKTLGDA---VKN-TL-------LTPNEA-R---KRENLPPLAGGDALY 393 (454) Q Consensus 339 ----------~~~~~~~f~~~~l~~~d~~~~~~~~~~~---~~~-g~-------~T~NE~-R---~~~g~~p~~~~d~~~ 393 (454) +......|++..+-......++..+..+ ++. |. +..+.+ + +..|++ +|. . + T Consensus 489 ~~~~~~~~~~p~~L~~~~~iv~l~~~q~~~~~~~i~~l~~~~~~~a~~P~v~d~~d~~~~~~~~~~~~g~~-~p~--~-~ 564 (641) T protein:vir:94 489 EQMDGFFEVSPEYLHYPYKFLALGANYVVERERMVTDLLQLLDISGRVPQIGQSLDYALILEDLLRQMRFT-DPM--R-Y 564 (641) T ss_pred hhcccCCCCCccceeeeeeEeecchhHHHHHHHHHHHHHHHHHHhhcChhhhhcCCHHHHHHHHHHHhCCC-Cch--h-h Confidence 1122223333222111111222222222 211 10 011111 1 112321 110 0 0 Q ss_pred cccccccccccccccccccCCCccCcccCCCCCCcccCcccccccccccHH----HHHHHHHhcC Q lcl|Aclame:pro 394 LQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDAV----KAMFRGILKK 454 (454) Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~a~~~~~~~~ 454 (454) +. ..+....+. .. ..........+..+... ...+.++.+. T Consensus 565 ir----------~~~~~~~~~-~~----------~~~~~q~~~~~~a~~~~~~~~~~a~~~~~~~ 608 (641) T protein:vir:94 565 IK----------KAEAPPAAP-PI----------APAEPGALPPEMMNSVGGGLNDQAIAGMTPE 608 (641) T ss_pred cc----------CccCchhHH-HH----------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHH Confidence 00 000000000 00 00000000111111000 0011111111 No 249 >protein:vir:7208 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049782;genbank:gi:9632594;genbank:GeneID:1258582 Probab=66.74 E-value=0.26 Score=23.77 Aligned_cols=405 Identities=14% Similarity=0.116 Sum_probs=161.5 Q ss_pred Ccchhhhhcccccc-----------ccccCcc--cchhh---hhhhhhhccccccC---C----cc------ccHHHHHh Q lcl|Aclame:pro 1 MWNLLRRTRKNQKS-----------GRDVREA--GWTSL---FQAVAEPFAGAWQQ---G----VK------ADPEAVLS 51 (454) Q Consensus 1 m~n~f~r~~~~~~~-----------~~~~~~~--~~~~~---~~~~~~~~~~~~~~---~----~~------~~~~~~~~ 51 (454) |+.+|+.+.+.... +...+.. +-... .+..+.++.+.... + .. -.-+..+. T Consensus 5 ~L~~~~~w~~~de~~~~~~~~~~~~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~~~~~eLI~~YR~ma~ 84 (524) T protein:vir:72 5 VLSLFAPWAKMDERNFKDQEKEDLVSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGMKTTRELIDTYRNLMN 84 (524) T ss_pred hhhHhhccccCcchhhhhhhccCCccccCccCCCCceeeeecccccccccceeeeehhcccccccchHHHHHHHHHHHhh Confidence 55555444332111 1111111 00000 00011112211111 0 00 01245567 Q ss_pred hHHHHHHHHHHHHhhccc-----ceEEEeccccccceehhhh---HHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEE Q lcl|Aclame:pro 52 FHAVFACISLISQDIAKM-----RLRLMQTDAQGIRRETRRG---DIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVL 123 (454) Q Consensus 52 ~~~v~~~i~~ia~~va~~-----~~~~~~~~~~~~~~~~~~~---~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~ 123 (454) +|.|..||+-|.+.+.-+ |..+.-.+-+ -....+.. ....+++--+.... -..++..|.+.|..|.. T Consensus 85 ~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~-~s~~iK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi~fh 159 (524) T protein:vir:72 85 NYEVDNAVSEIVSDAIVYEDDTEVVALNLDKSK-FSPKIKNMMLDEFSDVLNHLSFQRK----GSDHFRRWYVDSRIFFH 159 (524) T ss_pred ccchhhHHHHhhcceeEecCCCceEEEEecCcC-cchHHHHHHHHHHHHHHHHhccchh----hhHHHhhheeeeEEEEE Confidence 999999999998777533 2222211111 00011111 11112222222333 34456668889999988 Q ss_pred EeeCCC---CceeEEEEecCcceEEEEC-----CCCc------e-eeEEecccc--------ccccceeEEehhheEEee Q lcl|Aclame:pro 124 KIRNAR---GQIKELRILDWNRVEPLVA-----DDGE------V-FYRITPDRN--------CGITEAVTVPAREVIHDR 180 (454) Q Consensus 124 ~~r~~~---G~~~~l~~l~~~~~~~~~~-----~~g~------~-~~~~~~~~~--------~~~~~~~~~~~~~vih~~ 180 (454) ++-+.+ .-..+|..|+|-.++..+. ..|. . +|.|..... ...+..+.++.+-|.|.- T Consensus 160 Kiid~k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~y~~~g~~~~~~~~ikI~~dAI~y~h 239 (524) T protein:vir:72 160 KIIDPKRPKEGIKELRRLDPRQVQYVREIITETEAGTKIVKGYKEYFIYDTAHESYACDGRMYEAGTKIKIPKAAVVYAH 239 (524) T ss_pred EEEeCCCccccceeeeeeCCccceeeeeeccCCCccchhhcchhhheeeccCccccccCccccCCCcceecchhheeeee Confidence 865432 3488999999999976432 2221 1 111211000 111344556655544433 Q ss_pred cC-CCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCcc-CCHHHHHHHHHHHHHHhcC-----cccC Q lcl|Aclame:pro 181 FN-CFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGS-ITEENAKKLKSNWDSGYTG-----ENAG 253 (454) Q Consensus 181 ~~-~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~-~s~e~~~~~~~~~~~~~~g-----~n~g 253 (454) .+ -+.++-.-+|-|..+...+....-++...-=+--..+.-+-|+-++-+ +-...+++....+...+.. .+.| T Consensus 240 SGL~d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~KNklvYDa~TG 319 (524) T protein:vir:72 240 SGLVDCCGKNIIGYLHRAVKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPARKAAEHMQHVMNTMKNRVVYDASTG 319 (524) T ss_pred ccceeCCCCceeccchhhhHhHHhhhHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCC Confidence 22 112222345666666666655555555544443344444555555533 2223333333333332211 1222 Q ss_pred C------ce-e-----cC-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccc--cc--ccC-HHH Q lcl|Aclame:pro 254 K------TA-I-----LS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP--PS--SDN-VEA 311 (454) Q Consensus 254 ~------~~-v-----l~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~--~~--~~n-~e~ 311 (454) . .+ . |+ .|.+++.|.-... +.-++-..+..+.+.++++||.+-|..... -+ .++ +.- T Consensus 320 ev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItR 398 (524) T protein:vir:72 320 KIKNQQHNMSMTEDYWLQRRDGKAVTEVDTLPGADN-TGNMEDIRWFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITR 398 (524) T ss_pred eeccchhhhhhHhhhcccccCCCcccceeeccccCC-cChHHHHHHHHHHHHHHhCCchhhcCCCCCccccccccchhhH Confidence 2 11 2 22 3567777654322 233455678888999999999998833221 12 222 222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC---------ccc-----ceeeec--chhh----hh-cCHHHHHHHHHHHHh-C Q lcl|Aclame:pro 312 LEQQYYSQCLQTLIESIELLLDEALET---------GEN-----ESTEFD--VTTL----LR-MDSERRMKTLGDAVK-N 369 (454) Q Consensus 312 ~~~~~~~~~i~P~~~~ie~~l~~~l~~---------~~~-----~~~~f~--~~~l----~~-~d~~~~~~~~~~~~~-~ 369 (454) ....|.+ .|.-+..++...|...|-+ +.. ..++|+ .|.- .. .-...+++.+..+-. . T Consensus 399 DEikF~K-FI~rLR~rFs~~f~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyv 477 (524) T protein:vir:72 399 DELTFAK-FIRELQHKFEEVFLDPLKTNLLLKGIITEDEWNDEINNIKIEFHRDSYFAELKEAEILERRINMLTMAEPFI 477 (524) T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhh Confidence 2333333 3555666666655544421 111 123333 3321 11 111223333333221 1 Q ss_pred C-CcCHHHHHH-HhcCCCC--CCccccccccccccccccccccccccCCCcc Q lcl|Aclame:pro 370 T-LLTPNEARK-RENLPPL--AGGDALYLQQQNYSLEALSRRDAREDPFASS 417 (454) Q Consensus 370 g-~~T~NE~R~-~~g~~p~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (454) | .++.+=+++ .|.+.-. ...+...-.- ... +-...++.....- T Consensus 478 Gky~s~~yi~k~ILr~tDeei~~~~k~I~~E----~k~-~~~~~~~~~~~~f 524 (524) T protein:vir:72 478 GKYISHRTAMKDILQMTDEEIEQEAKQIEEE----SKE-ARFQDPDQEQEDF 524 (524) T ss_pred cccchhHHHHHHHhccCHHHHHHHHHHHHHH----hhc-CCCCCCchhhhcC Confidence 2 123322322 2222210 0000000000 000 0000000000000 No 250 >protein:vir:103458 Length: 524 # NCBI annotation: portal vertex of the head # Family: family:all:1036 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803110;genbank:gi:116326390;genbank:GeneID:4405487 Probab=66.09 E-value=0.27 Score=23.68 Aligned_cols=405 Identities=13% Similarity=0.114 Sum_probs=161.3 Q ss_pred Ccchhhhhcccccc-----------ccccCcc--cchhh---hhhhhhhccccccC---C----cc------ccHHHHHh Q lcl|Aclame:pro 1 MWNLLRRTRKNQKS-----------GRDVREA--GWTSL---FQAVAEPFAGAWQQ---G----VK------ADPEAVLS 51 (454) Q Consensus 1 m~n~f~r~~~~~~~-----------~~~~~~~--~~~~~---~~~~~~~~~~~~~~---~----~~------~~~~~~~~ 51 (454) |+.+|+.+.+.... +...+.. +-... .+..+.++.+.... + .. -.-+..+. T Consensus 5 ~L~~~~~w~~~de~~~~~~~~~~~~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~~~~~eLI~~YR~ma~ 84 (524) T protein:vir:10 5 VLSLFAPWAKMDERNFKDQEKEDLVSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGMKTTRELIDTYRNLMN 84 (524) T ss_pred hhhHhhccccCcchhhhhhhccCCccccCccCCCCceeeeecccccccccceeeeehhcccccccchHHHHHHHHHHHhh Confidence 55555444332111 1111111 00000 00011112211111 0 00 01245567 Q ss_pred hHHHHHHHHHHHHhhccc-----ceEEEeccccccceehhhh---HHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEE Q lcl|Aclame:pro 52 FHAVFACISLISQDIAKM-----RLRLMQTDAQGIRRETRRG---DIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVL 123 (454) Q Consensus 52 ~~~v~~~i~~ia~~va~~-----~~~~~~~~~~~~~~~~~~~---~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~ 123 (454) +|.|..||+-|.+.+.-+ |..+.-.+-+ -....+.. ....+++--+.... -..++..|.+.|..|.. T Consensus 85 ~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~-~s~~iK~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi~fh 159 (524) T protein:vir:10 85 NYEVDNAVSEIVSDAIVYEDDTEVVALNLDKSK-FSPKIKNMMLDEFNDVLNHLSFQRK----GSDHFRRWYVDSRIFFH 159 (524) T ss_pred ccchhhHHHHhhcceeEecCCCceEEEEecCcC-cchHHHHHHHHHHHHHHHHhccchh----hhHHHhhheeeeEEEEE Confidence 999999999998777533 2222211111 00011111 11112222222333 34456668889999988 Q ss_pred EeeCCC---CceeEEEEecCcceEEEEC-----CCCc------e-eeEEecccc--------ccccceeEEehhheEEee Q lcl|Aclame:pro 124 KIRNAR---GQIKELRILDWNRVEPLVA-----DDGE------V-FYRITPDRN--------CGITEAVTVPAREVIHDR 180 (454) Q Consensus 124 ~~r~~~---G~~~~l~~l~~~~~~~~~~-----~~g~------~-~~~~~~~~~--------~~~~~~~~~~~~~vih~~ 180 (454) ++-+.+ .-..+|..|+|-.++..+. ..|. . .|.|..... ...+..+.++.+-|.|.- T Consensus 160 Kiid~k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~y~~~g~~~~~~~~ikI~~dAI~y~h 239 (524) T protein:vir:10 160 KIIDPKRPKEGIKELRRLDPRQVQYVREIITETEAGTKIVKGYKEYFIYDTAHESYACDGRMYEAGTKIKIPKAAIVYAH 239 (524) T ss_pred EEeeCCCccccceeeeeeCCccceeeeeeccCCCccchhhcchhhheeeccCccccccCccccCCCcceecchhheeeee Confidence 865532 2488999999999976432 2221 1 111211000 111344556655544332 Q ss_pred cC-CCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCcc-CCHHHHHHHHHHHHHHhcC-----cccC Q lcl|Aclame:pro 181 FN-CFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGS-ITEENAKKLKSNWDSGYTG-----ENAG 253 (454) Q Consensus 181 ~~-~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~-~s~e~~~~~~~~~~~~~~g-----~n~g 253 (454) .+ -+.++-.-+|-|..+...+....-++...-=+--..+.-+-|+-++-+ +-...+++....+...+.. .+.| T Consensus 240 SGL~d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~KNklvYDa~TG 319 (524) T protein:vir:10 240 SGLVDCCGKNIIGYLHRAVKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPARKAAEHMQHVMNTMKNRVVYDASTG 319 (524) T ss_pred ccceeCCCCceeccchhhhHHHHhhhHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCC Confidence 22 112222345666666666655555555544443344444555555533 2223333333333332211 1222 Q ss_pred C------ce-e-----cC-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccc--cc--ccC-HHH Q lcl|Aclame:pro 254 K------TA-I-----LS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP--PS--SDN-VEA 311 (454) Q Consensus 254 ~------~~-v-----l~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~--~~--~~n-~e~ 311 (454) . .+ . |+ .|.+++.|.-... +.-++-..+..+.+.++++||.+-|..... -+ .++ +.- T Consensus 320 ev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItR 398 (524) T protein:vir:10 320 KIKNQQHNMSMTEDYWLQRRDGKAVTEVDTLPGADN-TGNMEDVRWFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITR 398 (524) T ss_pred eeccchhhhhhHhhhcccccCCCcccceeeccccCC-cChHHHHHHHHHHHHHHhCCchhhcCCCCCccccccccchhhH Confidence 2 11 2 22 3567777654322 233455678888999999999998833221 12 222 222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC---------ccc-----ceeeec--chhh----hh-cCHHHHHHHHHHHHh-C Q lcl|Aclame:pro 312 LEQQYYSQCLQTLIESIELLLDEALET---------GEN-----ESTEFD--VTTL----LR-MDSERRMKTLGDAVK-N 369 (454) Q Consensus 312 ~~~~~~~~~i~P~~~~ie~~l~~~l~~---------~~~-----~~~~f~--~~~l----~~-~d~~~~~~~~~~~~~-~ 369 (454) ....|.+ .|.-+..++...|...|-+ +.. ..++|+ .|.- .. .-...+++.+..+-. . T Consensus 399 DEikF~K-FI~rLR~rFs~~f~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyv 477 (524) T protein:vir:10 399 DELTFAK-FIRELQHKFEEVFLDPLKTNLLLKGIITEDEWNDEINNIKIEFHRDSYFTELKEAEILERRINMLTMAEPFI 477 (524) T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhh Confidence 2333333 3555666666655544421 111 123333 3321 11 111223333333221 1 Q ss_pred C-CcCHHHHHH-HhcCCCC--CCccccccccccccccccccccccccCCCcc Q lcl|Aclame:pro 370 T-LLTPNEARK-RENLPPL--AGGDALYLQQQNYSLEALSRRDAREDPFASS 417 (454) Q Consensus 370 g-~~T~NE~R~-~~g~~p~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (454) | .++.+=+++ .|.+.-. ...+...-.- ... +-...++.....- T Consensus 478 Gky~s~~yi~k~ILr~tDeei~~~~k~I~~E----~k~-~~~~~~~~~~~~f 524 (524) T protein:vir:10 478 GKYISHRTAMKDILQMTDEEIEQEAKQIEEE----SKE-ARFQDPDQEQEDF 524 (524) T ss_pred cccchhHHHHHHHhccCHHHHHHHHHHHHHH----hhc-CCCCCCchhhhcC Confidence 2 123322322 2222210 0000000000 000 0000000000000 No 251 >protein:vir:3361 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523332;genbank:gi:17570823;genbank:GeneID:927409 Probab=65.82 E-value=0.28 Score=23.64 Aligned_cols=414 Identities=10% Similarity=-0.023 Sum_probs=154.5 Q ss_pred Ccchhhhhccccc---c------ccccCcccchhhhhhhhhhcc-ccccCCccccHHHHHhhHHHHHHHHHHHHhhccc- Q lcl|Aclame:pro 1 MWNLLRRTRKNQK---S------GRDVREAGWTSLFQAVAEPFA-GAWQQGVKADPEAVLSFHAVFACISLISQDIAKM- 69 (454) Q Consensus 1 m~n~f~r~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~- 69 (454) |.+-.+-...++. + .+..-..-|.....+...-.. ..+....... .... +++-..|++.+|..+.+. T Consensus 1 m~~~~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~-~~~~-dst~~~a~~~Laa~l~~~l 78 (535) T protein:vir:33 1 MADSKRTGLGEDGAKATYDRLTNDRRAYETRAENCAQYTIPSLFPKESDNESTDY-TTPW-QAVGARGLNNLASKLMLAL 78 (535) T ss_pred CChhhhhccChhHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccc-cccc-cccHHHHHHHHHHHHHHhh Confidence 4443321111100 0 000001112222222111010 0000000000 0011 333445666665554322 Q ss_pred ----ce-EEEeccc-----cccce---------ehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCC Q lcl|Aclame:pro 70 ----RL-RLMQTDA-----QGIRR---------ETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARG 130 (454) Q Consensus 70 ----~~-~~~~~~~-----~~~~~---------~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G 130 (454) || ++-..+. .+... ..-.+.++..+.+- +++.-+..++.++..+|++++++..+. | T Consensus 79 tP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~~~~s----nf~~~~~~~~~~L~~~G~a~l~~~~~~-~ 153 (535) T protein:vir:33 79 FPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESN----SYRVTLFECLKQLIVAGNALLYLPEPE-G 153 (535) T ss_pred cCCCcccccccChHHHhccccCcchHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhhCceeEEeecCC-C Confidence 33 1110000 00000 00111222223333 345556777888999999999876443 3 Q ss_pred ceeEEEEecCcceEEEECCCCcee------------------------------------eEEec-cccc---------- Q lcl|Aclame:pro 131 QIKELRILDWNRVEPLVADDGEVF------------------------------------YRITP-DRNC---------- 163 (454) Q Consensus 131 ~~~~l~~l~~~~~~~~~~~~g~~~------------------------------------~~~~~-~~~~---------- 163 (454) ....+..++-..+.+..+..|.+- |.... .... T Consensus 154 ~~~~f~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~ql~~~~~~~~~~~~~~k~~~~~~~v~~~v~~~~~~~~~~~~~~~~ 233 (535) T protein:vir:33 154 SYNPMKLYRLSSYVVQRDAYGNVLQIVTRDQIAFGALPEDVRSAVEKSGGEKKMDEMVDVYTHVYLDEESGDYLKYEEVE 233 (535) T ss_pred CceeeEEEEcCeeEEeeCCCCCeeEEEeeEeecHHHHHHHhhhhhcccccccccccCCeEEEEEEeeCCCCcEEEEEEEe Confidence 333344444455555555554211 10000 0000 Q ss_pred ---ccc--ceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHH Q lcl|Aclame:pro 164 ---GIT--EAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKK 238 (454) Q Consensus 164 ---~~~--~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~ 238 (454) ..+ ....+.....+..|.....+..||.||.+.+...+.......+.......-...|.+.+.-+...... T Consensus 234 ~~~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~lv~~~g~~~~~---- 309 (535) T protein:vir:33 234 DVEIDGSDATYPTDAMPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIGLVNPAGITQPR---- 309 (535) T ss_pred CccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccccchh---- Confidence 000 00112223456666666777899999999999999999999999999999988888765432222211 Q ss_pred HHHHHHHHhcCcccCCcee--cCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH- Q lcl|Aclame:pro 239 LKSNWDSGYTGENAGKTAI--LSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ- 315 (454) Q Consensus 239 ~~~~~~~~~~g~n~g~~~v--l~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~- 315 (454) +...|.+ +.++ -++++...++...++=.-..+..+.....|..+|-+. .+...+. ..-|+++.+.. T Consensus 310 ------~~~~~~~--g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~~~--~~~~~~~-~r~TAtEV~~r~ 378 (535) T protein:vir:33 310 ------RLTKAQT--GDFVPGRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAFMLN--SAVQRTG-ERVTAEEIRYVA 378 (535) T ss_pred ------hcccCCc--eeeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhh--hcccCCC-ccccHHHHHHHH Confidence 1112211 1122 2345556665554432234556688888999998444 2222222 22244433322 Q ss_pred -HHHHHHHHHHHHHHHH------------HHHh-hcCcc-cceeeecchhhhh-----cCHHHHHHHHHHHHhCC----- Q lcl|Aclame:pro 316 -YYSQCLQTLIESIELL------------LDEA-LETGE-NESTEFDVTTLLR-----MDSERRMKTLGDAVKNT----- 370 (454) Q Consensus 316 -~~~~~i~P~~~~ie~~------------l~~~-l~~~~-~~~~~f~~~~l~~-----~d~~~~~~~~~~~~~~g----- 370 (454) -....+.|....+..+ +.+. ++++. ...++..+...+. .+.......+..+-+.+ T Consensus 379 ~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~yis~La~aqr~~~~~~l~~~~~~la~~~P~~~d 458 (535) T protein:vir:33 379 SELEDTLGGVYSILSQELQLPLVRVLLKQLQATSQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCISAWAALAPMQGD 458 (535) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccceeEEEecHHHHHHHHHHHHHHHHHHHHHHhhChhhhh Confidence 2333444544444443 3322 23321 1123444433222 12222222222221111 Q ss_pred -CcCHH----HHHHHhcCCCC----CCccccccccccccccccccccccccCCCccCcccCCCCCCc--ccCcccccccc Q lcl|Aclame:pro 371 -LLTPN----EARKRENLPPL----AGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVA--ASDGNKAITET 439 (454) Q Consensus 371 -~~T~N----E~R~~~g~~p~----~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~ 439 (454) .+..+ ++.+.+|.|+. +..+.--... ................+...... ..+++ ..-.+....+. T Consensus 459 ~~id~d~~~~~~a~~~Gvp~~~i~~~~ee~~~~~~--q~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~g~~~ 534 (535) T protein:vir:33 459 PDINLAVIKLRIANAIGIDTSGILLTDEQKQALMM--QDAAQTGVENAAAAGGAGVGALA--TSSPEAMQGAAAKAGLNA 534 (535) T ss_pred ccCCHHHHHHHHHHHcCCCHhHhcCCHHHHHHHHH--HHHHHHHHHHHHHhhhhhhcchh--hcCChhHHHHHHhccCCC Confidence 01222 22233454431 0000000000 00000000000000000000000 00000 00000000010 Q ss_pred c Q lcl|Aclame:pro 440 E 440 (454) Q Consensus 440 ~ 440 (454) . T Consensus 535 ~ 535 (535) T protein:vir:33 535 T 535 (535) T ss_pred C Confidence 0 No 252 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=61.42 E-value=0.35 Score=23.06 Aligned_cols=401 Identities=12% Similarity=0.101 Sum_probs=163.5 Q ss_pred Ccchhhhhcccc---------ccccccCcccchh----hh--------hhhhhhccccccCCcc-----c-cHHHHHhhH Q lcl|Aclame:pro 1 MWNLLRRTRKNQ---------KSGRDVREAGWTS----LF--------QAVAEPFAGAWQQGVK-----A-DPEAVLSFH 53 (454) Q Consensus 1 m~n~f~r~~~~~---------~~~~~~~~~~~~~----~~--------~~~~~~~~~~~~~~~~-----~-~~~~~~~~~ 53 (454) |..+|+.+.+.. ..+.++.++...+ .. .+...-+.+. ..... + +-+..+.+| T Consensus 3 ~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~d~-~~~~~~~~~LI~~YR~ma~~p 81 (516) T protein:vir:10 3 FLDLFKFWDRVDQNEYDERLKQGHESIATPKKDDGATEIEAREGESSYNALMQQFFGI-DNNISGTKDLINTYRQLTNNP 81 (516) T ss_pred chHhcccccchhhHHHHhhhcCCCCcccCCCCccCceeeecCcccccccceeeeeecc-cCccccHHHHHHHHHHhhhcc Confidence 566665532210 1111111111100 00 0000000110 00111 1 124556789 Q ss_pred HHHHHHHHHHHhhccc-----ceEEEeccccccce-ehhhh---HHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEE Q lcl|Aclame:pro 54 AVFACISLISQDIAKM-----RLRLMQTDAQGIRR-ETRRG---DIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLK 124 (454) Q Consensus 54 ~v~~~i~~ia~~va~~-----~~~~~~~~~~~~~~-~~~~~---~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~ 124 (454) .|..||+-|.+.+.-+ |..+-- ++.... ..+.. ....+++--+.... -..++..|.+.|..|..+ T Consensus 82 Evd~Av~eIvneaiv~d~~~~pV~l~l--~~~e~s~sik~kI~eeF~~Il~ll~F~~~----~~~~fR~WYVDgRi~fhK 155 (516) T protein:vir:10 82 EVERAVANIVNEAVVYEKGHKVVSLDL--DDTEFSSSIKDKILEEFDEICRLLDASRK----LDTLFRRWYIDSRIFFHK 155 (516) T ss_pred chhHHHHHhhcceeEecCCCceEEEEe--cccccchHHHHHHHHHHHHHHHHhccchh----hhHHHHhhhhcceEEEEE Confidence 9999999998877543 222211 111011 11111 11111222222333 344566688899999885 Q ss_pred eeC-CCCceeEEEEecCcceEEEECC-----CC------ce-eeEEeccc--------cccccceeEEehhheEEeecCC Q lcl|Aclame:pro 125 IRN-ARGQIKELRILDWNRVEPLVAD-----DG------EV-FYRITPDR--------NCGITEAVTVPAREVIHDRFNC 183 (454) Q Consensus 125 ~r~-~~G~~~~l~~l~~~~~~~~~~~-----~g------~~-~~~~~~~~--------~~~~~~~~~~~~~~vih~~~~~ 183 (454) +.+ ...-..+|..|+|-.++.++.- +| .. +|.|.... ....+.++.++.+ .|++-+.. T Consensus 156 iid~~k~GI~elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~d-aI~y~hSG 234 (516) T protein:vir:10 156 IMPNPKEGIVELRRLDPRHVEYYREIVTSDVGGTSVVKGYREFFVYTTGNEGYAYNGRLFEPNTRIKIPRS-AIVYAHSG 234 (516) T ss_pred EecCcccceeeeeeeCCcceeeEEeeecccCcchhhhhceeeeeeeecCccceeccccccCCCCceecchh-heeeeecC Confidence 543 3445889999999988876432 11 11 12221100 0111223445544 34443321 Q ss_pred --CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccC-CHHHHHHH----HHHHHHHh-----cC-- Q lcl|Aclame:pro 184 --FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI-TEENAKKL----KSNWDSGY-----TG-- 249 (454) Q Consensus 184 --~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~-s~e~~~~~----~~~~~~~~-----~g-- 249 (454) +.++-.-+|-|..+...+....-++...-=+--..+.-+-|+-++-+. -...+++. ..++++.+ .| T Consensus 235 l~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~KNklvYDa~TGev 314 (516) T protein:vir:10 235 LQDCSDRGIVGYLHNAVKPANQLKLLEDALVIYRITRAPERRVFYIDVGNMPNRKATEYVNGIMQSLKNRVVYDSNTGTV 314 (516) T ss_pred cccCCCCceeceehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCee Confidence 111122255666666666555555555444433444445555555332 22233333 33443332 12 Q ss_pred cccCCce-e-----cC-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccc--c-CHHHH--H Q lcl|Aclame:pro 250 ENAGKTA-I-----LS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS--D-NVEAL--E 313 (454) Q Consensus 250 ~n~g~~~-v-----l~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~--~-n~e~~--~ 313 (454) .+..+.+ . |+ .|.+++.|.-... +.-++-..+..+.+.++++||.+-++..+..+. + +.|-. . T Consensus 315 ~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~SRl~~e~~~~~~~Gr~~EItRDE 393 (516) T protein:vir:10 315 KNQKRNLSMTEDYWLMRRDGKSVTEVTSLPGAQT-MGEMDDVRWFNKKLYEALRIPLSRMPRDDGGMVIGGQDMAITRDE 393 (516) T ss_pred ccchhhhhhHhhhcccccCCCcccceeeccccCC-cChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHH Confidence 1111221 2 22 3667777654322 333455678888999999999999975544322 1 22222 2 Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hhcC-----ccc-----ceeeecc--hhh----hh-cCHHHHHHHHHHHHh--CC Q lcl|Aclame:pro 314 QQYYSQCLQTLIESIELLLDE----ALET-----GEN-----ESTEFDV--TTL----LR-MDSERRMKTLGDAVK--NT 370 (454) Q Consensus 314 ~~~~~~~i~P~~~~ie~~l~~----~l~~-----~~~-----~~~~f~~--~~l----~~-~d~~~~~~~~~~~~~--~g 370 (454) ..|. ..|.-+..++...|.. .|+. ... ..+.|++ |.- .. .-...+++.+..+-. +. T Consensus 394 iKF~-KFI~rLR~rFs~lF~~~L~~qLilKgIit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGk 472 (516) T protein:vir:10 394 LDFR-KFIVQLQHNFEEIFLDPLKTNLIYKKIILESEWEEQINNIKVNFHQDSYYTELKDIETLRQRVDALSQIEPYVGK 472 (516) T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcc Confidence 2233 3344455555444443 3321 111 1333333 321 11 112234444433321 23 Q ss_pred CcCHHHHHH-HhcCCCC--CCccccccccccccccccccccccccCCCccCcccCCCCCCcccCc Q lcl|Aclame:pro 371 LLTPNEARK-RENLPPL--AGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDG 432 (454) Q Consensus 371 ~~T~NE~R~-~~g~~p~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 432 (454) .++.+=+++ .|.+.-. +..+... .. ..+.+.-+++.++.+- T Consensus 473 y~s~~yi~k~ILr~tDeei~~~~k~I--------~~-------------E~~~~~~~~p~~e~~f 516 (516) T protein:vir:10 473 YVSHDYVMKNILQMTDEQIAQEEKQI--------EK-------------EANVKRFQNPENEDDF 516 (516) T ss_pred ccchHHHHHHHhcCCHhHHHHHHHHH--------HH-------------hhhCCCCCCCCccccC Confidence 455555553 4444321 1111100 00 0000000000111111 No 253 >protein:vir:7321 Length: 556 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:143 # MgeName: epsilon15 # Cross-refs: genbank:acc:NP_848212;genbank:gi:30387383;genbank:GeneID:2641872 Probab=60.96 E-value=0.36 Score=23.00 Aligned_cols=420 Identities=12% Similarity=0.106 Sum_probs=161.7 Q ss_pred Ccchhhhhcccc----ccccccCcccchhhhhhhhhhccccccCCccccHHH---HHhhHHHHHHHHHHHHhhc------ Q lcl|Aclame:pro 1 MWNLLRRTRKNQ----KSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEA---VLSFHAVFACISLISQDIA------ 67 (454) Q Consensus 1 m~n~f~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~i~~ia~~va------ 67 (454) |......+.+.. +..+..-..-|.....+.- |...........+... -.=+++-..|++.+|..+. T Consensus 1 m~~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~l-P~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~Las~l~~~ltpp 79 (556) T protein:vir:73 1 MAETEKERLLKQLAQLKNERTSFESHWLDLSDFIN-PRGSRFLTSDVNRDDRRNTKIVDPTGSMAQRILSSGMMSGITSP 79 (556) T ss_pred CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cccCCcCCCCCCcchhhcCccccchHHHHHHHHHHHHHHhhcCC Confidence 555332222111 1111111222333322221 1111111111001000 0113344456666655553 Q ss_pred ccce-EEEeccccccce-eh------hhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEec Q lcl|Aclame:pro 68 KMRL-RLMQTDAQGIRR-ET------RRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILD 139 (454) Q Consensus 68 ~~~~-~~~~~~~~~~~~-~~------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~ 139 (454) +-|| ++-..+.+.... .. -.+.+...+.+- +++.-+..++.++..+|++.+++..+.. ....+.+++ T Consensus 80 ~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~~~~~l~~s----nf~~~~~~~~~~L~~~G~a~l~~~~~~~-~~~r~~~~~ 154 (556) T protein:vir:73 80 ARPWFKLATPDPDMMDYGPVKIWLEVVQRRMNEVFNKS----NLYQSLPVMYASLGTFGTGAMAVMEDDQ-DVIRTMPFP 154 (556) T ss_pred CCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhhCceeeeeeecCC-ceEEEEEee Confidence 2233 222211111110 00 111222333333 3455567778899999999998765544 345666777 Q ss_pred CcceEEEECCCCceeeEEe-----------------------------------------cccccc---c---------- Q lcl|Aclame:pro 140 WNRVEPLVADDGEVFYRIT-----------------------------------------PDRNCG---I---------- 165 (454) Q Consensus 140 ~~~~~~~~~~~g~~~~~~~-----------------------------------------~~~~~~---~---------- 165 (454) ...+.+..+..|.+--.|. ..+... . T Consensus 155 l~~~~~~~d~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~~~~v~~~V~pr~~~~~~~~~~~~~p~~s 234 (556) T protein:vir:73 155 IGSYYLANSPRGSVDTCIRQFSMTVRQMVQEFGLDNVSTSVKGMWENGTYETWVEVNHCITPNVNRDSGKMDSKNKPYRS 234 (556) T ss_pred cceeEEeeCCCCCeEEEEEEEeccHHHHHHHcCcccCCHHHHHHHhcCCccceEEEEEEEeccccccccccCcccceEEE Confidence 7777777766653211110 000000 0 Q ss_pred ------------cceeEEehhheEEeecCCCcCcccccc-hhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCC Q lcl|Aclame:pro 166 ------------TEAVTVPAREVIHDRFNCFFHPLIGLP-PVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSIT 232 (454) Q Consensus 166 ------------~~~~~~~~~~vih~~~~~~~~~~~G~s-~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s 232 (454) .....|..-..+.+|.....+..||.| |.+.+...+.......+.......-...|.+.+. .+.. T Consensus 235 ~~~~~~~~~~~vl~esg~~e~P~~~~Rw~~~~ge~YGrg~P~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~~v~--~~~~ 312 (556) T protein:vir:73 235 VYFESGGDSDKLLRESGFDEFPILAPRWEVNGEDVYASSCPGMLALGQVKALQVEQKRKAQLIDKATNPPMVAP--TSLK 312 (556) T ss_pred EEEEecCCCceecccCCcccCCceeeeeeecCCcccccCccHHHhHHHHHHHHHHHHHHHHHHHHHhcCceecc--cccc Confidence 000001112234555555667889999 8999999999999999998888888888876643 2211 Q ss_pred HHHHHHHHHHHHHHhcC-cccCCceecCCCceeeeccc-cchhhHHHHHHHHHHHHHHHHhccchhh-hcccccccccCH Q lcl|Aclame:pro 233 EENAKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTF-SPVDSQTVEQLKMTAEIVCSVFRVPAYK-IGVGQPPSSDNV 309 (454) Q Consensus 233 ~e~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~-~~~d~~~~e~~~~~~~~Ia~~fgvp~~~-lg~~~~~~~~n~ 309 (454) .. .+ +...| .+.+ .+..+.-.++++.. ++.-....+..+.....|-.+|-+.-.+ ++..+.. .-|+ T Consensus 313 ~~-------~~-~~~pgg~~~~--~~~~~~~~i~p~~~~~~d~~~~~~~i~~~~~rI~~af~~d~~~~l~~~~~~-r~TA 381 (556) T protein:vir:73 313 NQ-------RV-SLLPGDVTYL--DVISGQDGFKPAYLVNPNTADLLADIQDTRQTINSAYFVDLFMMLQNINTR-SMPV 381 (556) T ss_pred cc-------ce-eeccCccccc--cCCCCccceeeeccccccHHHHHHHHHHHHHHHHHHhhcchhhhhccCCCC-CccH Confidence 00 01 12211 1211 11222234566543 3333344566788899999999877532 3332222 2233 Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHH------------HHh-hcCcc-----cceeeecchhhhhcCHH--------HHHH Q lcl|Aclame:pro 310 EALEQ--QYYSQCLQTLIESIELLL------------DEA-LETGE-----NESTEFDVTTLLRMDSE--------RRMK 361 (454) Q Consensus 310 e~~~~--~~~~~~i~P~~~~ie~~l------------~~~-l~~~~-----~~~~~f~~~~l~~~d~~--------~~~~ 361 (454) ++.+. .-....+.|....+..+| .+. .|++. +..+.+.+.+.+....+ ..+. T Consensus 382 tEv~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aqk~~~~~~i~~~~~ 461 (556) T protein:vir:73 382 EAVIEMKEEKLLMLGPVLERLNDEALNPLIDRVFSIMARKNMLPEPPDVLQGMPLRIEYISVMAQAQKSIGLTSLSQTVG 461 (556) T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeecHHHHHHHHHHHHHHHHHHH Confidence 33222 122334555555555543 221 12221 22344444433322111 1111 Q ss_pred HHHHHHhCC-----CcCHHHH----HHHhcCCCCCCccccccccccccccccccc--cccccCCCccCcccCCCCCCccc Q lcl|Aclame:pro 362 TLGDAVKNT-----LLTPNEA----RKRENLPPLAGGDALYLQQQNYSLEALSRR--DAREDPFASSGKTASVPQAVAAS 430 (454) Q Consensus 362 ~~~~~~~~g-----~~T~NE~----R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 430 (454) .+..+.+.+ .+..+++ -+.+|.|+ .++.-+..... ......++..+.. ....... T Consensus 462 ~~~~laq~~Pe~~d~id~d~~~~~~a~~~Gvp~-----------~~irs~eev~~~rq~r~~~qq~~~~~---~~~~~a~ 527 (556) T protein:vir:73 462 FIGQLAQFKPEALDKLDVDQAIDAFSEMSGVSP-----------TVIVPQEQVQGIREERAKQAQAAQAM---AMGQAAA 527 (556) T ss_pred HHHHHhccChhhHhcCCHHHHHHHHHHHcCCCh-----------hhcCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHH Confidence 111111111 1222222 22234332 11100000000 0000000000000 0000000 Q ss_pred CcccccccccccHHHHHHHHHhcC Q lcl|Aclame:pro 431 DGNKAITETEHDAVKAMFRGILKK 454 (454) Q Consensus 431 d~~~~~~~~~~~~~~a~~~~~~~~ 454 (454) ++-+...+. .++...++..++.. T Consensus 528 ~~~~~~~~~-~~~~~~~l~~~~~~ 550 (556) T protein:vir:73 528 QGAKTLSET-QTSDPSALTAIANA 550 (556) T ss_pred HHHHHhhhc-cCCCHHHHHHHHHh Confidence 000000100 00001111111111 No 254 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=57.66 E-value=0.43 Score=22.60 Aligned_cols=401 Identities=12% Similarity=0.116 Sum_probs=171.9 Q ss_pred cchhhhhcc--------ccccccccCcccch--hh-----hhhhhhhcccccc--CCc----c-c-cHHHHHhhHHHHHH Q lcl|Aclame:pro 2 WNLLRRTRK--------NQKSGRDVREAGWT--SL-----FQAVAEPFAGAWQ--QGV----K-A-DPEAVLSFHAVFAC 58 (454) Q Consensus 2 ~n~f~r~~~--------~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~--~~~----~-~-~~~~~~~~~~v~~~ 58 (454) |-+|.+--. ....+...+...-+ .+ ....+..+.+... .+. . + .-+..+.+|.|..| T Consensus 1 ~~~w~~~de~~~~~~~~~~~~S~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd~A 80 (511) T protein:vir:56 1 MKFWTKEEEQDIQKIEKNPVRSFSAPDNVDGAKEIHTNLLAPQLGHAIIPSDAQSEGTIPVKELIKSYRALAEYHEVDDA 80 (511) T ss_pred CCCccchhhhhhhhhccCCcccccCCCCCCCceEEecccccceecceeccccccccCccchHHHHHHHHHHhhccchhhH Confidence 443432211 11111111111100 00 0001111111110 011 0 1 12456678999999 Q ss_pred HHHHHHhhccc-----ceEEEeccccccceehhhh---HHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCC Q lcl|Aclame:pro 59 ISLISQDIAKM-----RLRLMQTDAQGIRRETRRG---DIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARG 130 (454) Q Consensus 59 i~~ia~~va~~-----~~~~~~~~~~~~~~~~~~~---~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G 130 (454) |+-|.+.+.-+ |..+.-.+-+ -....+.. ....+++- +++..=-..++..|.+.|..|..++-+.+. T Consensus 81 v~eIvne~iv~d~~~~pV~l~ld~~~-~s~~iK~kI~eeF~~Il~l----l~F~~~~~~~fR~WYVDgRi~fHkiid~k~ 155 (511) T protein:vir:56 81 IQEIVDEAIVYENDKEVVWLNLDNTD-FSENIKAKINEEFDRVVSL----LQMRKHGYKWFRKWYVDSRIYFHKILDKDN 155 (511) T ss_pred HHHhhcceeEecCCCceEEEEecccC-cchHHHHHHHHHHHHHHHH----hccchhhhHHHhhhhhcceEEEEEEecccc Confidence 99998777533 2222210000 00011111 11112222 222233345566688899999888766655 Q ss_pred ceeEEEEecCcceEEEECC-----C------CceeeEEecccc-c---------cccceeEEehhheEEeecCC---CcC Q lcl|Aclame:pro 131 QIKELRILDWNRVEPLVAD-----D------GEVFYRITPDRN-C---------GITEAVTVPAREVIHDRFNC---FFH 186 (454) Q Consensus 131 ~~~~l~~l~~~~~~~~~~~-----~------g~~~~~~~~~~~-~---------~~~~~~~~~~~~vih~~~~~---~~~ 186 (454) -..+|..|+|-.++.++.- + +...|+++.+.+ . .....+.++.+.|.|.-.+. +.+ T Consensus 156 GI~eLr~lDPr~i~~vr~i~~~~~~~~~v~~~~~ey~~Y~~~~~~~~~~~~~~~~~~~~vkI~~daI~y~hSGL~d~~~~ 235 (511) T protein:vir:56 156 NIIELRPLNPMKMELVREIQKETIDGVEVVKGTLEYYVYKQSDYKMPSWMSATNRAQTSFRIPKDAIVFAHSGLMRGCAD 235 (511) T ss_pred ceeehhhcCcccchhhhhhhcccccccccccceeeeeEecCCCcccCcccccccccccceeechhheeeecccceeccCC Confidence 5889999999888865421 1 122222222111 0 01234678888886554332 345 Q ss_pred cccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccC-CHHHHHHH----HHHHHHHh-----cC--cccCC Q lcl|Aclame:pro 187 PLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI-TEENAKKL----KSNWDSGY-----TG--ENAGK 254 (454) Q Consensus 187 ~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~-s~e~~~~~----~~~~~~~~-----~g--~n~g~ 254 (454) ..+.+|-|..+...+....-++...-=+--..+.-+-|+-++-+. -...+++. ..++++.+ .| .+..+ T Consensus 236 ~g~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~kNklVYDa~TGev~ddrk 315 (511) T protein:vir:56 236 DPYIIGYLDRAIKPANQLKMLEDALVIYRLARAPERRVFYVDVGNLPTQKAQQYVNGIMQNVKNRVVYDTQTGQVKNTTN 315 (511) T ss_pred CCeeeccchhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceeccchh Confidence 567788888888887777666666555544455555566565332 22233333 33333322 12 11112 Q ss_pred ce-e-----cC-----CCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccc-c--c--cc-CHHHHHHHHH Q lcl|Aclame:pro 255 TA-I-----LS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP-P--S--SD-NVEALEQQYY 317 (454) Q Consensus 255 ~~-v-----l~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~-~--~--~~-n~e~~~~~~~ 317 (454) .+ . |+ .|.+++.|.-... +.-++-..+..+.+.++++||.+-|+..+. + + .+ .+.-....|. T Consensus 316 ~msMlEDyWLpRReGgrgTEItTLpGgqn-lgem~DV~YF~kKLy~aLnVP~SRl~~e~q~~~f~~Gr~~EItRDEiKF~ 394 (511) T protein:vir:56 316 AMSMLEDYYLPRREGSKGTEVSTLPGGQS-LGDIEDVLYFNRKLYKAMRIPTSRAASEDQTGGINFGQGAEITRDELKFT 394 (511) T ss_pred hhhhHhhhcccccCCCCccceeeccccCC-cChHHHHHHHHHHHHHHhCCCcccccCCCCccccccccchhhhHHHHHHH Confidence 21 2 22 3567776654322 333455678888999999999999974321 1 1 11 2222223333 Q ss_pred HHHHHHHHHHHHHHHHHhhcC---------ccc-----ceeeec--chhhhh-----cCHHHHHHHHHHHHhC-C-CcCH Q lcl|Aclame:pro 318 SQCLQTLIESIELLLDEALET---------GEN-----ESTEFD--VTTLLR-----MDSERRMKTLGDAVKN-T-LLTP 374 (454) Q Consensus 318 ~~~i~P~~~~ie~~l~~~l~~---------~~~-----~~~~f~--~~~l~~-----~d~~~~~~~~~~~~~~-g-~~T~ 374 (454) + .|.-+..++...|...|-+ +.. ..+.|+ .|.-.. .-...+++.+..+-.- | .++. T Consensus 395 K-FI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~ 473 (511) T protein:vir:56 395 K-FVKRLQTKFETVITDPLKHQLIVNNIITEEEWDANHEKLYVVFNQDSYFEEAKELEILNSRMNAMRDIQDYAGKYYSH 473 (511) T ss_pred H-HHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhcchhccccch Confidence 3 3555666666555544421 111 133333 332111 1112233333322111 2 2344 Q ss_pred HHHHH-HhcCCCC--CCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcc Q lcl|Aclame:pro 375 NEARK-RENLPPL--AGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) Q Consensus 375 NE~R~-~~g~~p~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) +=+++ .|.+.-. ...+... . .+...+-. +.+ +++. T Consensus 474 ~yi~k~ILr~tDeei~~~~k~I--------~-------~E~k~~~~-------~~~--e~~f 511 (511) T protein:vir:56 474 KYIQKNILRLSDDQITAMQSEI--------D-------EEETNPRF-------QQD--DQGF 511 (511) T ss_pred HHHHHHHhccCHHHHHHHHHHH--------H-------HhhcCCCC-------CCc--ccCC Confidence 33432 3333210 0000000 0 00000000 000 0000 No 255 >protein:vir:94572 Length: 535 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919010;genbank:gi:119637774;genbank:GeneID:5179332 Probab=49.15 E-value=0.65 Score=21.62 Aligned_cols=416 Identities=9% Similarity=-0.042 Sum_probs=145.4 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhccc-----ce-EEE Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKM-----RL-RLM 74 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~-----~~-~~~ 74 (454) .|+-|+..+.. -..-|.....+... ..........-+...-.=.++-..|++.+|..+.+. || ++- T Consensus 18 r~~~l~~~R~~-------~e~~w~e~~~y~lP-~~~~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~ltP~~~WF~l~ 89 (535) T protein:vir:94 18 VYDALKNDRNS-------YETRAENCAKYTIP-SLFPKDSDNASTDYTTPWQAVGARGLNNLASKLMLALFPMQTWMKLT 89 (535) T ss_pred HHHHHHHHhhH-------HHHHHHHHHHHhcc-ccCCCCCCccccccCCcccccHHHHHHHHHHHHHhhhcCCCCccccc Confidence 33333221110 01112122111110 000000000000000011233344555555444321 33 111 Q ss_pred eccccc---cceehhhhHHHHhhhh-------ccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC-CCceeEEEEecCcce Q lcl|Aclame:pro 75 QTDAQG---IRRETRRGDIARLCRR-------PNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA-RGQIKELRILDWNRV 143 (454) Q Consensus 75 ~~~~~~---~~~~~~~~~~~~l~~~-------pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~-~G~~~~l~~l~~~~~ 143 (454) ..+... ............++.. -...-+++.=+..++.++..+|++++++..+. .+.....||+ ..+ T Consensus 90 ~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~f~~~pl--~~y 167 (535) T protein:vir:94 90 ISEFEAKQLVAQPAELAKVEEGLSMVERILMNYIESNSYRVTLFETLKQLVVAGNALLYIPEPEGTYNPMKLYRL--SSY 167 (535) T ss_pred cChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeEeeccCcCcccceEEEEc--CeE Confidence 111000 0000000111112111 11123445556677888899999999875442 2223344444 445 Q ss_pred EEEECCCCcee-----------------------------------eEEecccccc---------ccc-------eeEEe Q lcl|Aclame:pro 144 EPLVADDGEVF-----------------------------------YRITPDRNCG---------ITE-------AVTVP 172 (454) Q Consensus 144 ~~~~~~~g~~~-----------------------------------~~~~~~~~~~---------~~~-------~~~~~ 172 (454) .+..+..|.+. |......... .+. ...|. T Consensus 168 ~v~~d~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~~~~~~e~~g~~~~~~~~~~g~~ 247 (535) T protein:vir:94 168 VVQRDAFGTVLQIVTLDKTAYAALPEDVRNSMDSSQEHKGDEMIDVYTHIYLDEESGEYLKYEEIDGVEVEGTDASYPVD 247 (535) T ss_pred EEeeCCCCCeEEEEeeeeccHHHhhHHHHHHHHhccccCCCceeEEEEEEEeeCCCCcEEEEEEecCeeeccccccCccc Confidence 55455444321 1100000000 000 11233 Q ss_pred hhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHhcCccc Q lcl|Aclame:pro 173 AREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENA 252 (454) Q Consensus 173 ~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~~g~n~ 252 (454) ...++..|.....+..||.||..-+...+.......+.......-...|...+.-++.... .....+.+. T Consensus 248 ~~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g~~~~----------~~~~~~~~g 317 (535) T protein:vir:94 248 ACPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIGLVNPAGITQV----------RRLTKAQTG 317 (535) T ss_pred cCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccccch----------hhcccCCCc Confidence 3345666666677789999999999999999999998888877776666654432221111 111111111 Q ss_pred CCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH--HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 253 GKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ--QYYSQCLQTLIESIEL 330 (454) Q Consensus 253 g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~--~~~~~~i~P~~~~ie~ 330 (454) .-+....+++...++...++=.-..+..+..+..|..+|=+.. +... ++..-|+++.+. .-....+.|....+.. T Consensus 318 ~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~--~~~~-d~~rvTAtEV~~r~~E~~~~LGpv~~rl~~ 394 (535) T protein:vir:94 318 DFVSGRPEDISFLQLEKAADFSVARAVSEQIEGRLSYAFMLNS--AVQR-TGERVTAEEIRYVASELEDTLGGVYSILSQ 394 (535) T ss_pred eeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhHhh--hccC-CCCCccHHHHHHHHHHHHHHhhhHHHHHHH Confidence 0011223455566665443322334556788889988883321 2212 222224443322 2233445555555544 Q ss_pred HHH------------H-hhcCcc-cceeeecchhhhh-----cCHHHHHHHHHHHHhCC------CcCHHH----HHHHh Q lcl|Aclame:pro 331 LLD------------E-ALETGE-NESTEFDVTTLLR-----MDSERRMKTLGDAVKNT------LLTPNE----ARKRE 381 (454) Q Consensus 331 ~l~------------~-~l~~~~-~~~~~f~~~~l~~-----~d~~~~~~~~~~~~~~g------~~T~NE----~R~~~ 381 (454) +|- + .++++. ..-++.++...+. .+.+....++..+-+.+ .+..++ +-+.+ T Consensus 395 ElL~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~la~l~r~~~~~~l~~~~~~laq~~P~~ld~~id~d~~~~~~a~~~ 474 (535) T protein:vir:94 395 ELQLPMVRVLLKQLQATNQIPELPKEAVEPTISTGMEALGRGQDLDKLERCIAAWSALAPMQGDPDINIATIKLRIANAI 474 (535) T ss_pred HHHHHHHHHHHHHHHhCCCCCCCChhhccceEeehHHHHHHHHHHHHHHHHHHHHHhhChHHhhhcCCHHHHHHHHHHHh Confidence 443 2 223221 1111222221111 12222222222222211 112222 22334 Q ss_pred cCCC--C-CCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccccccccccHHHHHHHHHhcC Q lcl|Aclame:pro 382 NLPP--L-AGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDAVKAMFRGILKK 454 (454) Q Consensus 382 g~~p--~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a~~~~~~~~ 454 (454) |.|+ + -..++.- ... .+...+.. .............+ -+..+.++-...+.+-++.=- T Consensus 475 Gvp~~~i~rs~eev~---------~~~----~q~~~~~~-~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~g~~~~ 535 (535) T protein:vir:94 475 GIDTSGILKTPEEKQ---------QEM----AEAAQGTA-MQNAAASAGAGAGT-MATASPENMKAAAAQAGMAPN 535 (535) T ss_pred CCChhhhcCCHHHHH---------HHH----HHHHHHHH-HHHHHHHHHHhhhc-ccccChHHHHHHHHHhccCCC Confidence 4442 1 1101000 000 00000000 00000000000000 000000000000000000000 No 256 >protein:vir:99672 Length: 532 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249587;genbank:gi:68299738;genbank:GeneID:3799987 Probab=46.46 E-value=0.73 Score=21.32 Aligned_cols=381 Identities=10% Similarity=-0.069 Sum_probs=133.8 Q ss_pred Ccchhhhhccc-cccccccCcccchhhh----hhhhhhccccccCCcc--ccHHHHHh-----------hHHHHHHHHHH Q lcl|Aclame:pro 1 MWNLLRRTRKN-QKSGRDVREAGWTSLF----QAVAEPFAGAWQQGVK--ADPEAVLS-----------FHAVFACISLI 62 (454) Q Consensus 1 m~n~f~r~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~-----------~~~v~~~i~~i 62 (454) +-.+|.+-... ..+....-........ .++-..++.+.+..-. ++...... ..++..|-+.+ T Consensus 40 lP~~~~~~~~~~~~~~~~~~dst~~~a~~~LAa~L~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~~v~~~L~~ve~~~ 119 (532) T protein:vir:99 40 IPSVFPSATADGSTSYTTPWQSIGARGLNNLASKLMLALFPVGSSFFKLNVSELEVKQSITSPEELTEIATGLAMVERIC 119 (532) T ss_pred hhcccCCCCCcchhhccccccchHHHHHHHHHHHHHHhhcCCCCccccccCCHHHHhccCCChhhHHHHHHHHHHHHHHH Confidence 33333221111 1111111111111111 1222222222222111 11111100 11111222222 Q ss_pred HHhhcccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC--CCc--eeEEEEe Q lcl|Aclame:pro 63 SQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA--RGQ--IKELRIL 138 (454) Q Consensus 63 a~~va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~--~G~--~~~l~~l 138 (454) - ..+.+- +++.=+..++.++..+|++++++..+. .+. ....+|+ T Consensus 120 ~----------------------------~~~~~s----nf~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~~~~f~~~pl 167 (532) T protein:vir:99 120 M----------------------------NYMESN----SFRPTLHAAIKQLLVAGNVLLYIPSTEQVEGQSNAPKLYKL 167 (532) T ss_pred H----------------------------HHHHhc----CcHHHHHHHHHHHHhHCcEeEEecccccccCcccceEEEEc Confidence 1 222222 233446667788899999988875432 122 2333444 Q ss_pred cCcceEEEECCCCceeeEE------------------------------------eccccc--------------cccce Q lcl|Aclame:pro 139 DWNRVEPLVADDGEVFYRI------------------------------------TPDRNC--------------GITEA 168 (454) Q Consensus 139 ~~~~~~~~~~~~g~~~~~~------------------------------------~~~~~~--------------~~~~~ 168 (454) ..+.+..|..|.+...| ...... ..+.. T Consensus 168 --~~y~v~~d~~G~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~~~~~~~~~~~~g~~~~~~~ 245 (532) T protein:vir:99 168 --HNFVVERDAYDNVLQIVTEDKIARAALPEDVRKSLEDAQGDQNPSEEVTIYTHVYRDPEAMVFRSYQEIDGEIVAGTE 245 (532) T ss_pred --CeEEEeeCCCCCeeeEeeeeeecHHhcChHHHHHhhccccccCCCcceEEEEEEEecCCCCeeEEEEeecCceecccc Confidence 34554455544321000 000000 00000 Q ss_pred --eEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 169 --VTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSG 246 (454) Q Consensus 169 --~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~ 246 (454) ..+.....+..|.....+..||.||...+...+.......+.......-...|.+.+.-+...... .. T Consensus 246 ~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g~~~~~----------~~ 315 (532) T protein:vir:99 246 GEYPLDSCPWIPVRLIKMPNEDYGRSFVEEYLGDLKSLENLYEAIVKMSMISSKVLFFVNPNGVTQIR----------RV 315 (532) T ss_pred cccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeccccccchh----------hh Confidence 001122334455555667789999999999999999999999888888877777655433222211 11 Q ss_pred hcCcccCCc-eecCCCceeeeccccchhhH-HHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH--HHHHHHH Q lcl|Aclame:pro 247 YTGENAGKT-AILSNGAKYNPTTFSPVDSQ-TVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ--YYSQCLQ 322 (454) Q Consensus 247 ~~g~n~g~~-~vl~~g~~~~~l~~~~~d~~-~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~--~~~~~i~ 322 (454) ..+.+ |.+ .-..+++...++.... +.+ ..+..+.....|..+|-+.. +.. .++..-|+++.+.. -....+. T Consensus 316 ~~~~~-g~~v~g~~~~i~~~~~~~~~-~~~~~~~~i~~~~~rI~~af~~~~--~~~-~d~~r~TAtEV~~r~~E~~~~LG 390 (532) T protein:vir:99 316 AKANT-GDFVAGRKQDVEVFQLEKYN-DFQVAKATADDIEKRLSYAFMLNS--AVQ-RGGDRVTAEEIRYVAGELEDTLG 390 (532) T ss_pred ccCCC-cceecCCcccceeeeccccc-chhHHHHHHHHHHHHHHHHHhhhh--ccc-CCCCcccHHHHHHHHHHHHHHhh Confidence 11111 111 1122334444444332 333 34556788888989884432 211 12222244443322 2334455 Q ss_pred HHHHHHHHHHHHh-------------hcCcc---c--ceeeecchhhhh-cCHHHHHHHHHHHHhC-C----CcCHHH-- Q lcl|Aclame:pro 323 TLIESIELLLDEA-------------LETGE---N--ESTEFDVTTLLR-MDSERRMKTLGDAVKN-T----LLTPNE-- 376 (454) Q Consensus 323 P~~~~ie~~l~~~-------------l~~~~---~--~~~~f~~~~l~~-~d~~~~~~~~~~~~~~-g----~~T~NE-- 376 (454) |....+..+|-.- +|++. . ..+.--++.|-+ .+.+..+.++..+-+. + .+..++ T Consensus 391 pv~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~~~~~iv~~is~Laraq~~~~l~~~~~~laq~~p~~~d~id~d~~~ 470 (532) T protein:vir:99 391 GVYSLLSQELQLPLVKILLKELQATSKIPNLPKEAVEPAIATGLEALGRGHDLNKLNVFIDYMIKLAGLQDDDINLLDVK 470 (532) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhcccceeecchHHHHHHHHHHHHHHHHHHHhhcchhhhhCCHHHHH Confidence 5555555544321 22221 1 111111122211 1111112222221111 0 111111 Q ss_pred --HHHHhcCCCCCCccccccccccccccccccccccccCCCc------cCcccCCCCCCcccCccccccccc Q lcl|Aclame:pro 377 --ARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFAS------SGKTASVPQAVAASDGNKAITETE 440 (454) Q Consensus 377 --~R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~d~~~~~~~~~ 440 (454) +.+.+|.+|. .++.-.........+...+. ........+..-...+.+...+++ T Consensus 471 ~~~a~~~GV~~~----------~i~r~~ee~~~~~~q~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (532) T protein:vir:99 471 MRLANSLGMDTT----------GLILTQQDKQAKMAEASTAAGMVTAGQQMGAAGGQAAAAMMQQQAGMPTQ 532 (532) T ss_pred HHHHHHhCCChh----------hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHhhcCCCCC Confidence 1222233220 00000000000000000000 000000000000000000111111 No 257 >protein:vir:2198 Length: 536 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_041995;swissprot:sw:p03728;genbank:gi:9627467;goa:P03728;uniprot:P03728;genbank:GeneID:1261033 Probab=45.07 E-value=0.78 Score=21.17 Aligned_cols=415 Identities=11% Similarity=-0.015 Sum_probs=148.3 Q ss_pred Ccchhhhhc------ccc----ccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhccc- Q lcl|Aclame:pro 1 MWNLLRRTR------KNQ----KSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKM- 69 (454) Q Consensus 1 m~n~f~r~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~- 69 (454) |.+ .|.. +.. +..+..-..-|.....+...-.......+......... +++-..|++.+|..+.+. T Consensus 1 m~~--~~~~~~~~~~~~r~~~lk~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~-dst~~~a~~~Laa~l~~~l 77 (536) T protein:vir:21 1 MAE--KRTGLAEDGAKSVYERLKNDRAPYETRAQNCAQYTIPSLFPKDSDNASTDYQTPW-QAVGARGLNNLASKLMLAL 77 (536) T ss_pred Ccc--hhhchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccc-cccHHHHHHHHHHHHHHhh Confidence 555 1100 000 00000001112222222111111000000000000111 233444555555444321 Q ss_pred ----ce-EEEecccc-cc----c---------eehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCC Q lcl|Aclame:pro 70 ----RL-RLMQTDAQ-GI----R---------RETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARG 130 (454) Q Consensus 70 ----~~-~~~~~~~~-~~----~---------~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G 130 (454) || ++...+.+ +. . -..-.+.++..+.+- +++.=+..++.++..+|++++++..+..+ T Consensus 78 tP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~s----nf~~~~~~~~~~L~~~G~a~ly~~e~~~~ 153 (536) T protein:vir:21 78 FPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESN----SYRVTLFEALKQLVVAGNVLLYLPEPEGS 153 (536) T ss_pred cCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhHCcEeEEEeeCCCC Confidence 33 11110000 00 0 000112223333333 34455667788889999999998655544 Q ss_pred ceeEEEEecCcceEEEECCCCcee------------------------------------eEEeccc--ccc-------c Q lcl|Aclame:pro 131 QIKELRILDWNRVEPLVADDGEVF------------------------------------YRITPDR--NCG-------I 165 (454) Q Consensus 131 ~~~~l~~l~~~~~~~~~~~~g~~~------------------------------------~~~~~~~--~~~-------~ 165 (454) .+..+..++-..+.+..|..|.+- |..+... +.. . T Consensus 154 ~~~~f~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~~~~~~e~~ 233 (536) T protein:vir:21 154 NYNPMKLYRLSSYVVQRDAFGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHIYLDEDSGEYLRYEEVE 233 (536) T ss_pred ceeeEEEEEcCeEEEeeCCCCCeeEEeeeeeccHHHHHHhhhhhhcccccccccccceeEEEEEEEecCCCcEEEEeccC Confidence 444333344455555555544211 1111000 000 0 Q ss_pred -----cc--eeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHH Q lcl|Aclame:pro 166 -----TE--AVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKK 238 (454) Q Consensus 166 -----~~--~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~ 238 (454) ++ ...|.....+.+|.....+..||.||...+...+.......+.......-...|...+.- ...+. T Consensus 234 g~~v~~~~g~~~f~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~lv~p-~g~~~----- 307 (536) T protein:vir:21 234 GMEVQGSDGTYPKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAIVKMSMISSKVIGLVNP-AGITQ----- 307 (536) T ss_pred CeeeccccCccccccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCc-ccccc----- Confidence 00 011233345666666677789999999999999999999988888876666655544432 22110 Q ss_pred HHHHHHHHhcCcccCCc-eecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH-- Q lcl|Aclame:pro 239 LKSNWDSGYTGENAGKT-AILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ-- 315 (454) Q Consensus 239 ~~~~~~~~~~g~n~g~~-~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~-- 315 (454) -.....+.+ |.+ ....+.+...++...+.=.-..+..+.....|..+|-+.. +... ++..-|+++.+.. T Consensus 308 ----~~~~~~~~~-g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~--l~~~-~~~r~TAtEV~~r~~ 379 (536) T protein:vir:21 308 ----PRRLTKAQT-GDFVTGRPEDISFLQLEKQADFTVAKAVSDAIEARLSFAFMLNS--AVQR-TGERVTAEEIRYVAS 379 (536) T ss_pred ----hhhhccCCC-cceecCCcccceeeeccccccchHHHHHHHHHHHHHHHHHhhhh--cccC-CCCCccHHHHHHHHH Confidence 111111111 111 1123444555555443322235566888889989985542 2212 2222244433222 Q ss_pred HHHHHHHHHHHHHHHHHH------------H-hhcCccc-ceeeecchhhh----h-cCHHHHHHHHHHHHhCC------ Q lcl|Aclame:pro 316 YYSQCLQTLIESIELLLD------------E-ALETGEN-ESTEFDVTTLL----R-MDSERRMKTLGDAVKNT------ 370 (454) Q Consensus 316 ~~~~~i~P~~~~ie~~l~------------~-~l~~~~~-~~~~f~~~~l~----~-~d~~~~~~~~~~~~~~g------ 370 (454) -....+.|....+..+|- + .++++.. ..++.++...+ + .+.+....++..+.+.+ T Consensus 380 E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~l~~~~~~la~~~Pe~ld~ 459 (536) T protein:vir:21 380 ELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCVTAWAALAPMRDDP 459 (536) T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEEecHHHHHHHHHHHHHHHHHHHHHhhchhhhcc Confidence 223344444444444332 2 2233211 11222222111 1 12222222222222211 Q ss_pred CcCHHHH----HHHhcCCCC----CCccccccccc-cccccccccc-cccccCCCccCcccCCCCCCcc-cCcccccc Q lcl|Aclame:pro 371 LLTPNEA----RKRENLPPL----AGGDALYLQQQ-NYSLEALSRR-DAREDPFASSGKTASVPQAVAA-SDGNKAIT 437 (454) Q Consensus 371 ~~T~NE~----R~~~g~~p~----~~~d~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~ 437 (454) .+..+++ -+.+|.+|. +..+.--+... ..... .... .......++....++....... .-|-+... T Consensus 460 ~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 536 (536) T protein:vir:21 460 DINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMG-MDNGAAALAQGMAAQATASPEAMAAAADSVGLQPGI 536 (536) T ss_pred cCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChhhHHhhhhccccCCCC Confidence 1222222 223455331 11000000000 00000 0000 0000000000000000000000 00000000 No 258 >protein:vir:7430 Length: 563 # NCBI annotation: gp7 # Family: family:all:6920 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818545;genbank:gi:29566982;genbank:GeneID:1260216 Probab=42.70 E-value=0.87 Score=20.90 Aligned_cols=425 Identities=10% Similarity=-0.017 Sum_probs=179.5 Q ss_pred CcchhhhhccccccccccCcccchhhhh--------hhhhhccccc------cCCccccHHHHHhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQ--------AVAEPFAGAW------QQGVKADPEAVLSFHAVFACISLISQDI 66 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~i~~ia~~v 66 (454) |--= +|--...++.++-..+.|-+... -+.+.+.+.. +.+.. +.-+.+|.-+..|+..++-+ T Consensus 1 m~~~-~~q~~p~~~~fp~~~a~wV~~~D~~RlaaY~ly~d~y~n~~~el~~il~G~d---r~~~~~ps~r~~V~~~~~~L 76 (563) T protein:vir:74 1 MPYN-HKQYDPAKPFLRGGDDNIVDENDKNRVRAYDLYENIYLNSAETLKLVLRGDD---SVPILMPSGRKIVEAVHRFL 76 (563) T ss_pred CCcc-ccccCCCcccccccccccCCHHHHHHHHHHHHHHHhhcCchhhhhhhcCCCc---eeeeccchHHHHHHHHHHhc Confidence 2110 00000011111111222211111 1111111100 00100 11122344456677766555 Q ss_pred cccceEEEeccccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCC---CCceeEEEEecCcce Q lcl|Aclame:pro 67 AKMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNA---RGQIKELRILDWNRV 143 (454) Q Consensus 67 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~---~G~~~~l~~l~~~~~ 143 (454) .-++++.....++.... ...+..+++.--...+......+.-.+.++.|.++..++++. .|.-..+..++|.++ T Consensus 77 -g~~~~~~Ve~~~~de~~--~~avq~~Lr~~~~~e~l~~~~~~~~r~a~vlGDgvf~l~wDp~K~~g~R~rv~~vDP~~~ 153 (563) T protein:vir:74 77 -GVGFDYLVEPDMGDEGI--RQSLNAYFRTTFKREAIKAKFTSNKRWGLIRGDAHFYIHADPNKKAGERISVDEVDPRQI 153 (563) T ss_pred -CCCcEEecCccccCcch--HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccccccCCCceEeecCCcee Confidence 55555533222221111 122344445444555666677777788889999998888874 344556667777755 Q ss_pred EEEECCCCce--------------------ee-----EEec-ccccc----------------------------cccee Q lcl|Aclame:pro 144 EPLVADDGEV--------------------FY-----RITP-DRNCG----------------------------ITEAV 169 (454) Q Consensus 144 ~~~~~~~g~~--------------------~~-----~~~~-~~~~~----------------------------~~~~~ 169 (454) .+..+.+... .+ .|.- +.... ..+.. T Consensus 154 fp~~dpd~v~g~~~v~v~~~~~~pdd~~~~~~r~~~~~~~lndeg~~~~~~~~dae~w~lg~wd~r~~~~~~~~~~~~~~ 233 (563) T protein:vir:74 154 FLIEDGSTVVGFHMVDIVQDFRSPDDPSKKLARRRTFRRVRNDEGMFTGRISSELTHWTLGNWDDRGAISDEQARRKEQV 233 (563) T ss_pred eeccCCCCcccceeeecccCCCCCcchhccceeeeeeeeeeCCCCCccceeeeccchhccccccccCccchhhhcccchh Confidence 5543332210 01 1110 00000 00000 Q ss_pred --------------EEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHH Q lcl|Aclame:pro 170 --------------TVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEEN 235 (454) Q Consensus 170 --------------~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~ 235 (454) .+..-.++|++..++.+..+|.|-|..+...++..+.+..-......-++.|-+++..-...+ .. T Consensus 234 ~~~~~d~e~~~LP~pi~~iPiv~~~tip~~~s~WG~S~La~ll~~~~eLn~~~Td~s~i~~~tG~pi~vl~~~~p~d-~~ 312 (563) T protein:vir:74 234 RSAQHDEEEEELPEPISQLPLYRWRNKPPQNSSWGTSQLEGMETLAYALNQSLTDEDATIVFQGLGMYVTNASAPVD-PN 312 (563) T ss_pred hhhhhhchhhhccccccCccEEEcCCCCCcccccchhhHHHHHHHHHHHhhhhhHHHHHHHhcCCCeEEeccccccc-cc Confidence 011111667887788899999999999988888887777666666666666666665322211 11 Q ss_pred HHHHHHHHHHHhcCcccCCceecCC---CceeeeccccchhhHHHHHHHHHHH-HHHHHhccchhhhcccccccccCHHH Q lcl|Aclame:pro 236 AKKLKSNWDSGYTGENAGKTAILSN---GAKYNPTTFSPVDSQTVEQLKMTAE-IVCSVFRVPAYKIGVGQPPSSDNVEA 311 (454) Q Consensus 236 ~~~~~~~~~~~~~g~n~g~~~vl~~---g~~~~~l~~~~~d~~~~e~~~~~~~-~Ia~~fgvp~~~lg~~~~~~~~n~e~ 311 (454) ..+.. .|+ + .-|.++-+++ +..+..++-.++-.-+-..+++... -|+..=++|..-+|-.+.++--+. T Consensus 313 ~g~~~-~w~--v---gpG~i~El~~~~~~g~l~~v~g~~~l~~~q~Hm~~l~eral~~~s~tPavA~G~vD~~~~~SG-- 384 (563) T protein:vir:74 313 TGELT-DWN--I---GPMQIVEIAGNRNDNYFERVSGVQDVSPFQDHMKWIDEKGIAEGSGTPEVAIGRVDVTSAESG-- 384 (563) T ss_pred ccccc-ccc--c---CCceeEeccCCccccceeeecchhhhHHHHHHHHHHHHHHHHhhccCcceeecccccccccch-- Confidence 11000 010 0 1223443432 2345555544443333333444444 557777899999995444321110 Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHhhcCc--------c------------cceeeecchhhhhcCHH Q lcl|Aclame:pro 312 LEQQYYSQCLQTLIE--------------SIELLLDEALETG--------E------------NESTEFDVTTLLRMDSE 357 (454) Q Consensus 312 ~~~~~~~~~i~P~~~--------------~ie~~l~~~l~~~--------~------------~~~~~f~~~~l~~~d~~ 357 (454) .-+.-.|.|+.. ++-..+.+.||+. . ...+.+-+...+..|.. T Consensus 385 ---iALeL~L~PL~a~~~ek~l~l~~~mr~~r~~~~~~lL~~~erl~~~g~~~~~~g~~~~~~~~~v~ivf~p~~P~d~~ 461 (563) T protein:vir:74 385 ---ISLELQLKPLLAANEEKELEMIVVMDQFLHDWMTMWLPAYESDFQEQDGSRPFASADLLNECSVVCIFADPMPVNKT 461 (563) T ss_pred ---hhhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccccccccccCCceEEEEEeCCCCCccHH Confidence 011223333333 1111111112210 0 01234557788899999 Q ss_pred HHHHHHHHHHhCCCcCHHHHHHHh---cCCCCCCc-ccc-------ccccccccc--cccccccccccCCCccCcccCCC Q lcl|Aclame:pro 358 RRMKTLGDAVKNTLLTPNEARKRE---NLPPLAGG-DAL-------YLQQQNYSL--EALSRRDAREDPFASSGKTASVP 424 (454) Q Consensus 358 ~~~~~~~~~~~~g~~T~NE~R~~~---g~~p~~~~-d~~-------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 424 (454) ...+....++++|+++..-+-+++ |++- |+. ++. +...-.+.. ++........++..+.+...+. T Consensus 462 ~vv~~~~tl~~aGiiSretAv~~L~~~g~~~-pdae~e~~~ie~~~i~~~~~a~a~ad~~~~~~a~~~~g~~~~~~dd~- 539 (563) T protein:vir:74 462 QVTQDTLLLQQAHLILRKMAVAKLRSIGWEY-PEVDDQGNALTDDDIADMLLAEAEADASLGLSAMDNGGAGEQQFDDQ- 539 (563) T ss_pred HHHHHHHHHHHcCchhHHHHHHHHHhCCCCC-CcHHHHHhhcCHHHHHHHHHHHhhccCcccceecccCCCCccccccc- Confidence 999999999999999988876666 6542 221 111 000000000 0000000011110000000000 Q ss_pred CCCcccCcccccccc--cccHHHH Q lcl|Aclame:pro 425 QAVAASDGNKAITET--EHDAVKA 446 (454) Q Consensus 425 ~~~~~~d~~~~~~~~--~~~~~~a 446 (454) .++-..=++....-. .+.+..- T Consensus 540 g~p~~~~~~~~~~~~~~~~~~~~~ 563 (563) T protein:vir:74 540 GNPIDQFGNPVEIPPDVTQVPLSP 563 (563) T ss_pred CCchhHcCCcccCCccccccCCCC Confidence 000000000000000 0000000 No 259 >protein:vir:105641 Length: 516 # NCBI annotation: putative head-tail connector # Family: family:all:481 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425006;genbank:gi:83571754;uniprot:Q2WC46;genbank:GeneID:3837282 Probab=42.07 E-value=0.9 Score=20.83 Aligned_cols=387 Identities=8% Similarity=-0.015 Sum_probs=146.0 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhc------ccceEEE Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIA------KMRLRLM 74 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va------~~~~~~~ 74 (454) .|+-++..... -..-|.....+....+. ....+...+ +... .++-..|++.+|..+- +-||-=. T Consensus 19 r~~~L~~~R~~-------~e~~w~e~a~~~lP~~~-~~~~~~~~~-~~~~-dstg~~a~~~LAa~l~~~ltpp~~~WF~L 88 (516) T protein:vir:10 19 LWEKFSTKRSS-------FLDRAKHYSKLTLPYLM-NDKGDNETS-QNGW-QGVGAQATNHLANKLAQVLFPAQRSFFRV 88 (516) T ss_pred HHHHHHHhhhH-------HHHHHHHHHHhhccccc-CCCCCcccc-cccc-cchHHHHHHHHHHHHHhhhcCCCCccccc Confidence 33333211111 01112222111111000 000000001 1111 3333456666555543 2244211 Q ss_pred ecccc--------ccce-ehh------hhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEec Q lcl|Aclame:pro 75 QTDAQ--------GIRR-ETR------RGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILD 139 (454) Q Consensus 75 ~~~~~--------~~~~-~~~------~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~ 139 (454) ...+. +... ... .+.++..+.+ -+++.=+..++.++..+|++++++- .++. ...||| T Consensus 89 ~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~----snf~~~~~~~~~~L~~~G~a~l~~d--~~~~-~~~~pl- 160 (516) T protein:vir:10 89 DLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQ----RQFRPAVVEAFKHLIVAGSCMLYKP--SKGA-ISAIPM- 160 (516) T ss_pred cCChhhHhhhhccCchhHHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhHCeEeEEec--CCCC-eEEEEc- Confidence 11110 0000 011 0111112222 2445556677788899999988763 3332 345665 Q ss_pred CcceEEEECCCCceeeEEe--------------------------------------ccc-c-----------ccccce- Q lcl|Aclame:pro 140 WNRVEPLVADDGEVFYRIT--------------------------------------PDR-N-----------CGITEA- 168 (454) Q Consensus 140 ~~~~~~~~~~~g~~~~~~~--------------------------------------~~~-~-----------~~~~~~- 168 (454) ..+.+..|..|.+.-.+. ... . ...+.. T Consensus 161 -~~y~v~~d~~G~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~i~t~v~~~~~~~~~~~~~~d~~~~~~~s 239 (516) T protein:vir:10 161 -HHYVVNRDTNGDLLDIILLQEKSLRTFDPATRAVVEVGLKGKKCKEDDSIKLYTHAKYLGEGFWELKQSADDIPVGKVS 239 (516) T ss_pred -CeEEEeeCCCCCeEEEeeeecccHHHHHHHhhhhhhhhhhhhccCCCCceEEEEEEEecCCCceEEEEeeCceeecccc Confidence 345555555553211110 000 0 000000 Q ss_pred -eEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 169 -VTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGY 247 (454) Q Consensus 169 -~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~ 247 (454) ..+.....+..|.....+..||.||..-+...+.......+.......-...|...+.-+.... ..+.. T Consensus 240 ~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g~~~----------~~~l~ 309 (516) T protein:vir:10 240 KIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAVARGAALMADIKYLIRPGAQTD----------VDHFV 309 (516) T ss_pred ccccccCCeeeeeeeecCCCCcccchHHHhhHHHHHHHHHHHHHHHHHHHhcCCCcccCcccccc----------hhhhc Confidence 0011223345555556677899999999999999999999998888877777766543322211 11122 Q ss_pred cCcccCCceecCCCceeeecccc-chhhH-HHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHH--HHHHHHHHHH Q lcl|Aclame:pro 248 TGENAGKTAILSNGAKYNPTTFS-PVDSQ-TVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALE--QQYYSQCLQT 323 (454) Q Consensus 248 ~g~n~g~~~vl~~g~~~~~l~~~-~~d~~-~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~--~~~~~~~i~P 323 (454) .|.+ | .++-+..-.+.++... ..|.+ ..+..+.....|..+|=+.....-..+. -|+++.+ ..-....+.| T Consensus 310 ~~~~-g-~~~~g~~~~v~~~q~~~~~d~~~~~~~i~~~~~rI~~af~~~~l~~rd~~r---vTAtEV~~r~~E~~~~LGp 384 (516) T protein:vir:10 310 NSGT-G-EVVTGVEEDIHIVQLGKYADLTPISAVLEVYTRRIGVVFMMETMTRRDAER---VTAVEIQRDALEIEQNMGG 384 (516) T ss_pred cCCC-c-eeecCCcccceeeecCcccchHHHHHHHHHHHHHHHHHHhhhhhhccCCcc---ccHHHHHHHHHHHHHHhhh Confidence 2221 1 1222222233333322 23333 3455688888999998776433322222 2434332 2234456677 Q ss_pred HHHHHHHHHHHhhc--------C---cccceeee-c-chhhhh-cCHHHHHHHHHH---HHhCC-----CcC----HHHH Q lcl|Aclame:pro 324 LIESIELLLDEALE--------T---GENESTEF-D-VTTLLR-MDSERRMKTLGD---AVKNT-----LLT----PNEA 377 (454) Q Consensus 324 ~~~~ie~~l~~~l~--------~---~~~~~~~f-~-~~~l~~-~d~~~~~~~~~~---~~~~g-----~~T----~NE~ 377 (454) ....+..+|-.-|+ + +.-....+ . +..+-+ .+.+.....+.. +.+.. .+. .+++ T Consensus 385 v~~rl~~Ell~Pli~r~~~~~~p~~P~~lv~~~~v~~i~~L~raq~~~~i~~~~q~i~~~~q~~p~v~d~id~d~~~~~~ 464 (516) T protein:vir:10 385 VYSLFATTMQSPVAMWGLLEAGDSFTSDLVDPVIITGIEALGRMAELDKLANFAQYMSLPLQWPEPVLAAVKWPDYMDWV 464 (516) T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCChhhcCcceehhHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHhhcCHHHHHHHH Confidence 77766666533221 1 11001100 0 111111 111111111111 11000 001 2334 Q ss_pred HHHhcCCCCCCcccccccccccccccccc----cc--cc--ccCCCccCcccCCCCCCcccCcccc Q lcl|Aclame:pro 378 RKRENLPPLAGGDALYLQQQNYSLEALSR----RD--AR--EDPFASSGKTASVPQAVAASDGNKA 435 (454) Q Consensus 378 R~~~g~~p~~~~d~~~~~~~~~~~~~~~~----~~--~~--~~~~~~~~~~~~~~~~~~~~d~~~~ 435 (454) .+.+|.|+ +.+.-+.... .. .. ....+..++..+....++ ..++ T Consensus 465 a~~~gvp~-----------~~irs~eev~~~r~~~~~~q~~~~~~~~~~~~~~~~~~~~---~~~~ 516 (516) T protein:vir:10 465 RGQISAEL-----------PFLKSAEEMEQEQEAQMQAQQAQMLEEGVAKAVPGVIQQE---LKEA 516 (516) T ss_pred HHHhCCCh-----------hccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhh---hhcC Confidence 44555443 1111100000 00 00 000000000000000000 0000 No 260 >protein:vir:8846 Length: 705 # NCBI annotation: putative portal protein # Family: family:all:1548 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775254;genbank:gi:27476052;genbank:GeneID:2700600 Probab=41.16 E-value=0.94 Score=20.73 Aligned_cols=408 Identities=11% Similarity=0.005 Sum_probs=110.8 Q ss_pred Ccchhhhhc-----cccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhcccceEEEe Q lcl|Aclame:pro 1 MWNLLRRTR-----KNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQ 75 (454) Q Consensus 1 m~n~f~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~~~~~~~ 75 (454) +-++..--. .............. +............+ .+. ....+.-.-+++--|..+.-++|.+.+ T Consensus 151 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~i~---i~~V~p~d~~~dp~a~~~~d~~~~~~~ 222 (705) T protein:vir:88 151 FSGLSEDMVADILSDPDTSILAQSVDDD----GTYTIKIRKDKKKR-EIK---VLCVKPENFLVDRLATCIDDARFLCHR 222 (705) T ss_pred hccCChhhhhhhhhhhhhhccccccccc----ceeeeEEeeeeecC-cee---eeeccHHHceecCCCCCcccCcEEEEE Confidence 111110000 00000000000000 00000000000000 000 000011111222223344445544332 Q ss_pred ccccccceehhhhHHHHhhhhccccCCHHHHH-HHHHHHHHHhCCe----EEEEeeCCCCceeEEEEecCcceEEEECCC Q lcl|Aclame:pro 76 TDAQGIRRETRRGDIARLCRRPNAQQNRIQFF-ELWLNAKLRHGNT----VVLKIRNARGQIKELRILDWNRVEPLVADD 150 (454) Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~-~~~~~~~ll~G~~----~i~~~r~~~G~~~~l~~l~~~~~~~~~~~~ 150 (454) ..-...............-..+..+....+.- +.+..+ ..++. +... ..+.....+ .+.-.++....+.+ T Consensus 223 ~~~t~~dl~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~d~~~~~~~~~~--~~~~~~r~v-~~~E~y~~~d~~~d 297 (705) T protein:vir:88 223 EKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRD--NFDMTGQLQYNSG--DDAEANREV-WASECYTLLDVDGD 297 (705) T ss_pred EeccHHHHHhhcCChhHhhhhhcccccchhhhhhhcccc--ccccccccccccc--cccCCceeE-EEEEeeeEecccCC Confidence 11100000000000000000011100000000 000000 00000 0000 000011111 11111222222333 Q ss_pred Cce-eeEEeccccccccceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCc Q lcl|Aclame:pro 151 GEV-FYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPG 229 (454) Q Consensus 151 g~~-~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~ 229 (454) |.. .|.++..++.... ..++....++.+...+..+..||.|++..+.+.....+...+.....+.....|.+++. ++ T Consensus 298 ~~~~~~~~~~~g~~il~-~~~~~~~PF~~~~~~p~~~~~~G~g~~~~~~d~Q~~~n~~~~~~~d~~~~~~~~~~~~~-~g 375 (705) T protein:vir:88 298 GISELRRILYVGDYIIS-NEPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVL-DG 375 (705) T ss_pred cceeeEEEEEeCccccc-cccCCCCCEEEecceeecCccccCChHHHHhHHHHHHHHHHHHHHHHHHhccCCceecc-cc Confidence 332 1222211111000 00011112333444455567899999999988888888888877777777777776663 23 Q ss_pred cCCHHHHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhccccccc--cc Q lcl|Aclame:pro 230 SITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPS--SD 307 (454) Q Consensus 230 ~~s~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~--~~ 307 (454) ..+.+.. .. ...|+++....+-.+.++.............++....+-...||++...|...... .. T Consensus 376 ~v~~~d~----------~~-~~pg~vv~~~~~~~i~~~~~~~~~~~~~~ll~~~~~~~~~~tGi~~~~~G~~~~~~~~~~ 444 (705) T protein:vir:88 376 QVNLEDL----------LT-NEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQ 444 (705) T ss_pred ccCcccc----------cc-cCCCeeEEecCCCccccccCCcCcHHHHHHHHHHHHHHHHhhCCchHHcCCCcccccchh Confidence 3332211 11 12345554433222333333333233445567777888889999999999543211 11 Q ss_pred CHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhcCcc-----ccee---------eecch---hhhhcCH Q lcl|Aclame:pro 308 NVEA--------------LEQQYYSQCLQTLIESIELLLDEALETGE-----NEST---------EFDVT---TLLRMDS 356 (454) Q Consensus 308 n~e~--------------~~~~~~~~~i~P~~~~ie~~l~~~l~~~~-----~~~~---------~f~~~---~l~~~d~ 356 (454) ++.. ..++|....++++++.+-..+...+=.+. +..+ .|++. .+-.... T Consensus 445 Ta~~i~~~~~~~~~r~~~~~r~~a~~~~~~l~~~~~~li~~~~~~~~~~ri~g~~v~v~~~~~~~~~~v~v~v~~~~~~~ 524 (705) T protein:vir:88 445 AAMSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVGIGNMNK 524 (705) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeccchhccchHhhccCCceEEeeccccchH Confidence 1111 11122222344444444332222221111 1011 11111 0000111 Q ss_pred HHHHHHHHHHHh-------CC----CcCHHHHHHH-------hcCCCCCCccccccccccccccccccccccccCCCccC Q lcl|Aclame:pro 357 ERRMKTLGDAVK-------NT----LLTPNEARKR-------ENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSG 418 (454) Q Consensus 357 ~~~~~~~~~~~~-------~g----~~T~NE~R~~-------~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (454) +.+...+..+++ .+ .++..+.++. .|+.. -..+.. .....+....... T Consensus 525 eq~~a~l~~ll~~~q~l~~~~~~~~~~~~~~~~~~~~el~e~~~~k~---~~~~~~-----------~~~~~e~~~~~~~ 590 (705) T protein:vir:88 525 DQQMLHLMRIWEMAQAVVGGGGLGVLVSEQNLYNILKEVTENAGYKD---PDRFWT-----------NPNSPEALQAKAI 590 (705) T ss_pred HHHHHHHHHHHHHHHHhhcccchhhhcChHHHHHHHHHHHHhhhhhh---HHHHhh-----------hhhhHHHHHHHHh Confidence 112211111111 00 1122211111 11000 000000 0000000000000 Q ss_pred cccCCCCCCcccCcccccccccccHHHH-------HHHHHhcC Q lcl|Aclame:pro 419 KTASVPQAVAASDGNKAITETEHDAVKA-------MFRGILKK 454 (454) Q Consensus 419 ~~~~~~~~~~~~d~~~~~~~~~~~~~~a-------~~~~~~~~ 454 (454) .............+.+....++ +.+.-+++ T Consensus 591 ------~~q~e~~~~~~~~~~q~e~~k~q~e~~~~q~e~q~~q 627 (705) T protein:vir:88 591 ------REQKEAQPKPEDIKAQADAQRAQSDALAKQAEAQMKQ 627 (705) T ss_pred ------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 0000000000000000000000 00000000 No 261 >protein:vir:8883 Length: 543 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813772;genbank:gi:29366727;genbank:GeneID:1258836 Probab=38.06 E-value=1.1 Score=20.39 Aligned_cols=406 Identities=11% Similarity=-0.020 Sum_probs=151.0 Q ss_pred Ccchhhhhcccc---------ccccccCcccchhhhhhhhhhccccccCCccccHHH--HHhhHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 1 MWNLLRRTRKNQ---------KSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEA--VLSFHAVFACISLISQDIAKM 69 (454) Q Consensus 1 m~n~f~r~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~i~~ia~~va~~ 69 (454) |.+-.+.+...+ +.....-..-|.....+...-+. ......+... -.-+++-..|++.+|..+.+. T Consensus 1 ~~~~~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~y~lP~~~---~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~ 77 (543) T protein:vir:88 1 MAETKREGLAEEGAKAVYERLKNDRVPYETRAENCAKVTIPSLF---PKDSDNSSTDYTTPWQAVGARGLNNLSAKVMLA 77 (543) T ss_pred CcccccCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccC---CCCCCcccccccccccchHHHHHHHHHHHHHHh Confidence 655322111100 00001111122222222211000 0000111110 011334445666665555322 Q ss_pred -----ce-EEEecccc-----c---cceehh------hhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCC Q lcl|Aclame:pro 70 -----RL-RLMQTDAQ-----G---IRRETR------RGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR 129 (454) Q Consensus 70 -----~~-~~~~~~~~-----~---~~~~~~------~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~ 129 (454) || ++-..+.. + ...... .+.+...+.+- +++.=+..++.++..+|++++++..+.. T Consensus 78 ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~s----nf~~~~~~~~~~L~~~G~a~ly~~~~~~ 153 (543) T protein:vir:88 78 LFPLQSWMKLKVSEWQAKQLVSDPSQLAVVEQGLGMVERILMSYMEAN----SYRVTLFELIRQLALAGTALIYLPPPDA 153 (543) T ss_pred hcCCCcccccccChHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhhCceeeeeccCcc Confidence 22 11111000 0 000000 11122223333 4455566778888999999988764432 Q ss_pred C----ceeEEEEecCcceEEEECCCCce-----------------------------------eeEEeccccccc----- Q lcl|Aclame:pro 130 G----QIKELRILDWNRVEPLVADDGEV-----------------------------------FYRITPDRNCGI----- 165 (454) Q Consensus 130 G----~~~~l~~l~~~~~~~~~~~~g~~-----------------------------------~~~~~~~~~~~~----- 165 (454) . .+...|||. .+.+..+..|.+ +|.......... T Consensus 154 ~~~~~~~~~~~pl~--~y~v~~d~~G~v~~i~r~~~~~~~~l~~~~~~~v~~~~~~~p~~~~~v~~~V~pr~~~~~~~~~ 231 (543) T protein:vir:88 154 SSNSYNPMKLYTLH--NHVVQRDAFGNVLQIVTLDKVAYAALPEDVRNSLSGGQEYKPEQELEVYTHIYIDDESGDFLSY 231 (543) T ss_pred ccceecceEEeEcc--eEEEeeCCCCCeeeeeeeeeccHHHHhHHhhHHHHHHhhcCCccceEEEEEEEeecCCCccccc Confidence 1 123345553 344444444321 111111100000 Q ss_pred ----cc-------eeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHH Q lcl|Aclame:pro 166 ----TE-------AVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEE 234 (454) Q Consensus 166 ----~~-------~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e 234 (454) +. ...+..-..+..|.....+..||.||...+...+.......+.......-...|.+++.-+..... T Consensus 232 ~~~~~~~v~~~~~~~~~~e~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp~~v~~~g~~~~- 310 (543) T protein:vir:88 232 QEIEGVEVDGSDGQYPQDALPWIAVRWTKRDGEHYGRSHVEEYLGDLNSLESLNEAMIKFAMISSKVVGLVNPNGITQV- 310 (543) T ss_pred ccccCeeeecCCCccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccccch- Confidence 00 011122244566666677789999999999999999999999999999998888876543322221 Q ss_pred HHHHHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH Q lcl|Aclame:pro 235 NAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ 314 (454) Q Consensus 235 ~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~ 314 (454) .+...|.+..-+.-..+++...++...++=.-..+..+.....|..+|-+.. +...+. ..-|+++.+. T Consensus 311 ---------~~~~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~--~~~~~~-~r~TAtEV~~ 378 (543) T protein:vir:88 311 ---------RRLVKAQTGDFVAGRKADIEFLQLEKTADFTVAKSVADAIEARLSYVFMLNS--AVQRSG-ERVTAEEIRY 378 (543) T ss_pred ---------hhcccCCCceeecCCCCcceeeecccccchhHHHHHHHHHHHHHHHHHhhhh--hccCCC-CcccHHHHHH Confidence 1222222110011123455666666544333345567888889999996642 222222 2234444332 Q ss_pred --HHHHHHHHHHHHHHHHHHHHhh-------------cCcc-cceeeecchhhhhcCHHHHHHHHHHHHhC-CCcCHHHH Q lcl|Aclame:pro 315 --QYYSQCLQTLIESIELLLDEAL-------------ETGE-NESTEFDVTTLLRMDSERRMKTLGDAVKN-TLLTPNEA 377 (454) Q Consensus 315 --~~~~~~i~P~~~~ie~~l~~~l-------------~~~~-~~~~~f~~~~l~~~d~~~~~~~~~~~~~~-g~~T~NE~ 377 (454) .-....+.|....+..+|-.-| +++. ...++.++.. -...+.+.... ++.+.-+. T Consensus 379 r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs--------~l~~l~r~~~~~~l~~~~~~ 450 (543) T protein:vir:88 379 VASELEDTLGGVYSILSQELQLPIVRVLLNQLQATQQIPNLPQEAVEPTVTT--------GAEALGRGQDLDKLTQFLNA 450 (543) T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhceeeeEEe--------cHHHHHHHHHHHHHHHHHHH Confidence 2234456666666665554222 2111 0111122111 11111111110 01111111 Q ss_pred HHHhcCCCCCCccccccccccccccccccccccccCCCccCccc-CCCCCCcccCcccccccccccHHHHHHHHHhcC Q lcl|Aclame:pro 378 RKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTA-SVPQAVAASDGNKAITETEHDAVKAMFRGILKK 454 (454) Q Consensus 378 R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~a~~~~~~~~ 454 (454) -..++ + |+- ..++..+..... -....+-+. .--.+++ +......++....++..+.-+. T Consensus 451 v~~~~--~-p~v------ld~id~d~~~~~-----~a~~~Gv~~~~i~r~~~----e~~~~~~q~~~q~~~~~~~~~~ 510 (543) T protein:vir:88 451 VATVS--Q-LNG------DPDLNVNNIKLR-----LANAIGIDTAGLLLTEA----EKAQAQSQEMLKQGGLNAAAGI 510 (543) T ss_pred HHhcc--c-hhh------hccCCHHHHHHH-----HHHHhCCChhhhcCCHH----HHHHHHHHHHHHHHHHHHHHHH Confidence 11111 1 110 001111110000 000000000 0000000 0000000010111111111111 No 262 >protein:vir:572 Length: 506 # NCBI annotation: unknown # Family: family:all:6660 # MgeID: mge:13 # MgeName: SPBc2 # Cross-refs: genbank:acc:NP_046607;genbank:gi:9630180;genbank:GeneID:1261432 Probab=37.05 E-value=1.1 Score=20.27 Aligned_cols=413 Identities=9% Similarity=0.082 Sum_probs=139.6 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCc---cc---cHHHHHh-------------------hHHH Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGV---KA---DPEAVLS-------------------FHAV 55 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~-------------------~~~v 55 (454) |.-+=+.....+.-..... .+....+...++|....-++. .+ +-+.+.. ...| T Consensus 1 mvTl~K~~i~~E~~~~~lN--~Y~TY~~~F~~GFi~~~~~NG~v~~i~~~~L~~~F~NPD~~~~~I~~L~~Y~YI~~~~i 78 (506) T protein:vir:57 1 MVTLNKVDIESEEYKQMLN--DYSTYTSTFASGFISNMFSNGIVTEIEAEQLKNYFSNPDEFQEEIEDLAQYFYISTAEI 78 (506) T ss_pred CceeechhccHHHHHHHHh--hhhHHHHHHHHHHHHHhhcCCceeeeeHHHHHhhhcChHHHHHHHHHHHHHhhhhcchH Confidence 2221111111000000000 000000100111100000000 00 0111222 2233 Q ss_pred HHHHHHHHHhhcccceEEEeccccccceehhhh--HHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCcee Q lcl|Aclame:pro 56 FACISLISQDIAKMRLRLMQTDAQGIRRETRRG--DIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIK 133 (454) Q Consensus 56 ~~~i~~ia~~va~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~ 133 (454) +..-++| .++-.+.+++..-+++ ...+.| .+.+.+..--.-+ +-+.++.++...|-..- ++-...-.|. T Consensus 79 ~QL~~LI-~aLP~L~Y~I~~~~k~---K~~~~~iS~lN~~L~Kv~HK~----LTRDLL~Q~A~aGTLvG-~WLG~~k~PY 149 (506) T protein:vir:57 79 HQLFELI-EALPTLNYKIDSFNKV---KSSDKHISLLNKSLHKVKHKR----LTRDLLKQVATAGTLVG-IWLGDAKSPY 149 (506) T ss_pred HHHHHHH-HhcCCcceeehhhhhc---cchhhHHHHHHHHHHHHHHHH----HHHHHHHHhhccCceeE-eeecCCCCcc Confidence 3334443 2333344444322221 121222 2233333322222 22223333333333211 1111111111 Q ss_pred EEEEecCcceEEEECCCCceeeEEe------------------------ccccccc------cceeEEehhheEEeecC- Q lcl|Aclame:pro 134 ELRILDWNRVEPLVADDGEVFYRIT------------------------PDRNCGI------TEAVTVPAREVIHDRFN- 182 (454) Q Consensus 134 ~l~~l~~~~~~~~~~~~g~~~~~~~------------------------~~~~~~~------~~~~~~~~~~vih~~~~- 182 (454) -...-.-.+|-+.-...|..+..+- ....... -....+|.+.-+..|.+ T Consensus 150 ~~iF~~iKYVFP~~R~~G~~V~VvD~~~F~~~~~~~R~~~~~~LSP~I~~~~Y~~~~~~~~~~R~~~LP~~rT~~~R~~T 229 (506) T protein:vir:57 150 PFIFDEIKYVFPSFRRNGDWVCVVDMELFTKYKDDQRNELLKSLSPYIKQSDYENFMKDREKYRFKELPQERTFPLRTGT 229 (506) T ss_pred hhhhhhhhhhccccccCCceEEEEehHHhhhhhHHHHHHHHHhhhhhhhhhhhhhHhhhHHhhhhhhcccccchhheeee Confidence 0000000111111111121111110 0000000 00112333333322222 Q ss_pred CCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCcc--C---C----HH-HHHHHHHHHHHHhcCccc Q lcl|Aclame:pro 183 CFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGS--I---T----EE-NAKKLKSNWDSGYTGENA 252 (454) Q Consensus 183 ~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~--~---s----~e-~~~~~~~~~~~~~~g~n~ 252 (454) .+.++.-|.|-.....-.|..........++....--..-.++++..+ . + ++ ...++..-.+.+...... T Consensus 230 L~RNQ~LG~~~~T~~L~Dv~HK~KLkD~E~SIA~KII~A~AVL~~~~~~~Ngeyt~~K~~~a~K~Ki~~GVK~ALEK~~K 309 (506) T protein:vir:57 230 LKRNQGLGTSWVTPGLYDVLHKKKLKDVERSIANKIINAVAVLTIGTDKGNGEYTNMKLPKAVKQKIHGGVKTALEKNQK 309 (506) T ss_pred ecccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhheeeeeecccCCcccccccchHHHHHHHHHHHHHHHhcccc Confidence 233444455544444444444444444444443333333445544322 1 1 12 222333344444432212 Q ss_pred CCceec--CC--CceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 253 GKTAIL--SN--GAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQTLIESI 328 (454) Q Consensus 253 g~~~vl--~~--g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~~~i~P~~~~i 328 (454) .++.++ ++ .++|-.+. .+-++-. -.+....+|-+|+|++.+++++. .+||+++.-....|++. |.-+++.| T Consensus 310 DGv~~vs~PDFA~~~FP~vK--~~~LD~~-K~D~I~~DI~~A~GlS~~L~NG~-~GNYAts~LNLD~FYKr-IGV~~E~I 384 (506) T protein:vir:57 310 DGVTVVSIPDFADINFPDVK--ADGLDGA-KFDHINSDIQSAYGLSGSLLNGD-GGNYATSSLNLDTFYKR-IGVLMEDI 384 (506) T ss_pred cCeEEEeccccccccccccc--ccCCCch-hhcccchhhhhhhccchheecCC-CcceeeeechHHHHHHH-HHHHHHHH Confidence 245443 22 22222221 1111111 12455678999999999999875 55899988888888874 78899999 Q ss_pred HHHHHHhhcC----c-ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHH-HhcCCC----------CCC---c Q lcl|Aclame:pro 329 ELLLDEALET----G-ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARK-RENLPP----------LAG---G 389 (454) Q Consensus 329 e~~l~~~l~~----~-~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~-~~g~~p----------~~~---~ 389 (454) |+++-.+|+. . .+...-|+++--.+...+.+.+.+-++-..|+ ++--+.. .+|..- ++. - T Consensus 385 EqEvY~~L~~lvL~~~~~~NY~~~Y~KD~Pl~~~~K~D~LIKL~~~G~-S~K~V~Dnl~GvS~E~Y~E~tlYE~E~LKL~ 463 (506) T protein:vir:57 385 EQEVYQKLFNLVLPAAQKDNYYMNYDKDKPLTLKEKMDILIKLNDKGW-SIKHVVDNLAGVSWESYLEQTLYETEELKLQ 463 (506) T ss_pred HHHHHHHHHHhhcccccCCceeEeeCCCCccchhhhhchheeecccCc-cHHHHHHhhhccchHHHHHHHHHHHHHhhHH Confidence 9888877752 2 12223344443333455666666666655554 3333332 233210 000 0 Q ss_pred cccccccccccccc--cccccccccCCCccCcccCCCCCCcccCcccccc Q lcl|Aclame:pro 390 DALYLQQQNYSLEA--LSRRDAREDPFASSGKTASVPQAVAASDGNKAIT 437 (454) Q Consensus 390 d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 437 (454) +.+..+.+...+.+ .+.+. ... ...+..-...+..|+..+. T Consensus 464 EKI~P~~~s~~~tGN~vG~P~---~~~----~~~D~Tv~Satsngndnpi 506 (506) T protein:vir:57 464 EKIRPYQTSYTFTGNEVGRPN---EGN----KNNDNTVKSATSNGNDNPI 506 (506) T ss_pred hhcCcccccceecccccCCCC---CCC----CcccchhhhcccCCCCCCC Confidence 11111122222211 11111 000 0001111111122222222 No 263 >protein:vir:107822 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1673 # MgeName: BIP-1 # Cross-refs: genbank:acc:NP_996631;genbank:gi:45580765;genbank:GeneID:2767898 Probab=33.95 E-value=1.3 Score=19.92 Aligned_cols=404 Identities=11% Similarity=0.056 Sum_probs=152.5 Q ss_pred Ccchhhhh-cccc----ccccccCcccchhhhhhhhhhccccccCCccccHHHH---HhhHHHHHHHHHHHHhhc----- Q lcl|Aclame:pro 1 MWNLLRRT-RKNQ----KSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAV---LSFHAVFACISLISQDIA----- 67 (454) Q Consensus 1 m~n~f~r~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~i~~ia~~va----- 67 (454) |-+--.++ ...+ +..+..-..-|.....+.-.-......... ...+.. .=+++-..|++.+|..+. T Consensus 1 M~~~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~-~~~~~~~~~~~dst~~~a~~~LAa~L~~~ltp 79 (555) T protein:vir:10 1 MAEQTERKLLLSRWGQLRTERESWMSHWKEISDYLLPRAGRFFVQDR-NRGEKRHNNILDNTGTRALRVLAAGMMAGMTS 79 (555) T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCcccccccCCCC-CcchhcccccccccHHHHHHHHHHHHHHhhcC Confidence 55522110 0000 001111111222222221100000000000 000111 113444456666665553 Q ss_pred -ccce-EEEeccccccce-eh------hhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEe Q lcl|Aclame:pro 68 -KMRL-RLMQTDAQGIRR-ET------RRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRIL 138 (454) Q Consensus 68 -~~~~-~~~~~~~~~~~~-~~------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l 138 (454) +-|| ++-..+.+.... .. -.+.+...+.+ -+++.-+..++.++..+|++.+++..+.. ....+..+ T Consensus 80 p~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~----snf~~~~~~~~~~Lv~~G~a~l~~~~d~~-~~~rf~~~ 154 (555) T protein:vir:10 80 PARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAK----SNTYRALHSMYEELGAFGTASSIVLPDFD-AVVYHHSL 154 (555) T ss_pred CCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhhCceEEEEecCCC-ceEEEEEe Confidence 2243 222111111110 00 01112222333 23455566778899999999998765543 34566677 Q ss_pred cCcceEEEECCCCceeeEEec-------------------------cccccccc-------------------------- Q lcl|Aclame:pro 139 DWNRVEPLVADDGEVFYRITP-------------------------DRNCGITE-------------------------- 167 (454) Q Consensus 139 ~~~~~~~~~~~~g~~~~~~~~-------------------------~~~~~~~~-------------------------- 167 (454) +...+.+..+..|.+--.|.. ........ T Consensus 155 pl~~~~v~~d~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~~~~~~~~~~~~p~~ 234 (555) T protein:vir:10 155 TAGEYAIAADNQGRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVIHAIEPRADRDPSKRDDRNMAWK 234 (555) T ss_pred ecceeEEeeCCCCCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEEEEEeeccCcCcCCCCccccceE Confidence 777777777776643111100 00000000 Q ss_pred eeE---------------EehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCC Q lcl|Aclame:pro 168 AVT---------------VPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSIT 232 (454) Q Consensus 168 ~~~---------------~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s 232 (454) .+. |..-..+.+|.....+..||.||.+.+...+.......+.......-...|...+.-+.. . T Consensus 235 s~~~~~~~d~~~vl~esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~~v~~~~~-~ 313 (555) T protein:vir:10 235 SVYFEPGADETRTLRESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNPPLQLPVSAK-N 313 (555) T ss_pred EEEEEeccCCccccccCCcccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccc-c Confidence 000 111223445555556778999999999999999999999888888888777766433221 1 Q ss_pred HHHHHHHHHHHHHHhcCcccCCc-eecC--CCceeeeccccchhhH-HHHHHHHHHHHHHHHhccchhhhcccccccccC Q lcl|Aclame:pro 233 EENAKKLKSNWDSGYTGENAGKT-AILS--NGAKYNPTTFSPVDSQ-TVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDN 308 (454) Q Consensus 233 ~e~~~~~~~~~~~~~~g~n~g~~-~vl~--~g~~~~~l~~~~~d~~-~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n 308 (454) .. + +..- |++ .+.. ++-.+.++-....|.+ ..+..+.....|..+|=..-.......+...-| T Consensus 314 ~~--------~-~~~p----gg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~dlf~~l~~~~~~~~T 380 (555) T protein:vir:10 314 QD--------I-STVP----GGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASFYADLFLMLANGTNPQMT 380 (555) T ss_pred cc--------c-eecc----ccccccccCCCCcceecccccccchHHHHHHHHHHHHHHHHHhhcchhhhccCCCCCccc Confidence 10 1 1111 111 1111 1112233222222333 345578889999999966543322222322334 Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHH------------Hh-hcCcc-----cceeeecchhhhhcCHHH-HHHHHHHHH Q lcl|Aclame:pro 309 VEALE--QQYYSQCLQTLIESIELLLD------------EA-LETGE-----NESTEFDVTTLLRMDSER-RMKTLGDAV 367 (454) Q Consensus 309 ~e~~~--~~~~~~~i~P~~~~ie~~l~------------~~-l~~~~-----~~~~~f~~~~l~~~d~~~-~~~~~~~~~ 367 (454) +++.+ ..-....+.|....+..+|- +. ++++. +..+.+.+.+.+....+. .+..+...+ T Consensus 381 AtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~~i~~~l 460 (555) T protein:vir:10 381 ATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATNSVDRFV 460 (555) T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHHHHHHHH Confidence 44332 22234455555555554443 22 22221 122333333322211110 011111111 Q ss_pred hCCCcCHHHHHHHhcCCCC----CCcccc---ccccccccccccccccccccCCCccCcccCCCCCCcccCccccccccc Q lcl|Aclame:pro 368 KNTLLTPNEARKRENLPPL----AGGDAL---YLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETE 440 (454) Q Consensus 368 ~~g~~T~NE~R~~~g~~p~----~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 440 (454) +-+-...+..|- -+.|.. +....-++..-. .++++ -.+..... T Consensus 461 -------~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~i--------------------rs~ee---v~~~r~qr 510 (555) T protein:vir:10 461 -------GNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELI--------------------VPGNQ---VALIRKQR 510 (555) T ss_pred -------HHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCcccc--------------------CCHHH---HHHHHHHH Confidence 111111121110 000100 000000000000 00000 00000000 Q ss_pred ccHHHH-----HHHHH---hcC Q lcl|Aclame:pro 441 HDAVKA-----MFRGI---LKK 454 (454) Q Consensus 441 ~~~~~a-----~~~~~---~~~ 454 (454) +.+..+ ++.+. .|. T Consensus 511 ~~~~q~~~~a~~~~q~~~~~~~ 532 (555) T protein:vir:10 511 ADQQQAAQQAALLNQGADTAAK 532 (555) T ss_pred HHHHHHHHHHHHHHHHHHHHHH Confidence 000000 11111 111 No 264 >protein:vir:98506 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1592 # MgeName: BMP-1 # Cross-refs: genbank:acc:NP_996583;genbank:gi:45569514;genbank:GeneID:2767834 Probab=33.95 E-value=1.3 Score=19.92 Aligned_cols=404 Identities=11% Similarity=0.056 Sum_probs=152.5 Q ss_pred Ccchhhhh-cccc----ccccccCcccchhhhhhhhhhccccccCCccccHHHH---HhhHHHHHHHHHHHHhhc----- Q lcl|Aclame:pro 1 MWNLLRRT-RKNQ----KSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAV---LSFHAVFACISLISQDIA----- 67 (454) Q Consensus 1 m~n~f~r~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~i~~ia~~va----- 67 (454) |-+--.++ ...+ +..+..-..-|.....+.-.-......... ...+.. .=+++-..|++.+|..+. T Consensus 1 M~~~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~-~~~~~~~~~~~dst~~~a~~~LAa~L~~~ltp 79 (555) T protein:vir:98 1 MAEQTERKLLLSRWGQLRTERESWMSHWKEISDYLLPRAGRFFVQDR-NRGEKRHNNILDNTGTRALRVLAAGMMAGMTS 79 (555) T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCcccccccCCCC-CcchhcccccccccHHHHHHHHHHHHHHhhcC Confidence 55522110 0000 001111111222222221100000000000 000111 113444456666665553 Q ss_pred -ccce-EEEeccccccce-eh------hhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEe Q lcl|Aclame:pro 68 -KMRL-RLMQTDAQGIRR-ET------RRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRIL 138 (454) Q Consensus 68 -~~~~-~~~~~~~~~~~~-~~------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l 138 (454) +-|| ++-..+.+.... .. -.+.+...+.+ -+++.-+..++.++..+|++.+++..+.. ....+..+ T Consensus 80 p~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~----snf~~~~~~~~~~Lv~~G~a~l~~~~d~~-~~~rf~~~ 154 (555) T protein:vir:98 80 PARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAK----SNTYRALHSMYEELGAFGTASSIVLPDFD-AVVYHHSL 154 (555) T ss_pred CCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhhCceEEEEecCCC-ceEEEEEe Confidence 2243 222111111110 00 01112222333 23455566778899999999998765543 34566677 Q ss_pred cCcceEEEECCCCceeeEEec-------------------------cccccccc-------------------------- Q lcl|Aclame:pro 139 DWNRVEPLVADDGEVFYRITP-------------------------DRNCGITE-------------------------- 167 (454) Q Consensus 139 ~~~~~~~~~~~~g~~~~~~~~-------------------------~~~~~~~~-------------------------- 167 (454) +...+.+..+..|.+--.|.. ........ T Consensus 155 pl~~~~v~~d~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~~~~~~~~~~~~p~~ 234 (555) T protein:vir:98 155 TAGEYAIAADNQGRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVIHAIEPRADRDPSKRDDRNMAWK 234 (555) T ss_pred ecceeEEeeCCCCCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEEEEEeeccCcCcCCCCccccceE Confidence 777777777776643111100 00000000 Q ss_pred eeE---------------EehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCC Q lcl|Aclame:pro 168 AVT---------------VPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSIT 232 (454) Q Consensus 168 ~~~---------------~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s 232 (454) .+. |..-..+.+|.....+..||.||.+.+...+.......+.......-...|...+.-+.. . T Consensus 235 s~~~~~~~d~~~vl~esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~~v~~~~~-~ 313 (555) T protein:vir:98 235 SVYFEPGADETRTLRESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNPPLQLPVSAK-N 313 (555) T ss_pred EEEEEeccCCccccccCCcccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccc-c Confidence 000 111223445555556778999999999999999999999888888888777766433221 1 Q ss_pred HHHHHHHHHHHHHHhcCcccCCc-eecC--CCceeeeccccchhhH-HHHHHHHHHHHHHHHhccchhhhcccccccccC Q lcl|Aclame:pro 233 EENAKKLKSNWDSGYTGENAGKT-AILS--NGAKYNPTTFSPVDSQ-TVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDN 308 (454) Q Consensus 233 ~e~~~~~~~~~~~~~~g~n~g~~-~vl~--~g~~~~~l~~~~~d~~-~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n 308 (454) .. + +..- |++ .+.. ++-.+.++-....|.+ ..+..+.....|..+|=..-.......+...-| T Consensus 314 ~~--------~-~~~p----gg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~dlf~~l~~~~~~~~T 380 (555) T protein:vir:98 314 QD--------I-STVP----GGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASFYADLFLMLANGTNPQMT 380 (555) T ss_pred cc--------c-eecc----ccccccccCCCCcceecccccccchHHHHHHHHHHHHHHHHHhhcchhhhccCCCCCccc Confidence 10 1 1111 111 1111 1112233222222333 345578889999999966543322222322334 Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHH------------Hh-hcCcc-----cceeeecchhhhhcCHHH-HHHHHHHHH Q lcl|Aclame:pro 309 VEALE--QQYYSQCLQTLIESIELLLD------------EA-LETGE-----NESTEFDVTTLLRMDSER-RMKTLGDAV 367 (454) Q Consensus 309 ~e~~~--~~~~~~~i~P~~~~ie~~l~------------~~-l~~~~-----~~~~~f~~~~l~~~d~~~-~~~~~~~~~ 367 (454) +++.+ ..-....+.|....+..+|- +. ++++. +..+.+.+.+.+....+. .+..+...+ T Consensus 381 AtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~~i~~~l 460 (555) T protein:vir:98 381 ATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATNSVDRFV 460 (555) T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHHHHHHHH Confidence 44332 22234455555555554443 22 22221 122333333322211110 011111111 Q ss_pred hCCCcCHHHHHHHhcCCCC----CCcccc---ccccccccccccccccccccCCCccCcccCCCCCCcccCccccccccc Q lcl|Aclame:pro 368 KNTLLTPNEARKRENLPPL----AGGDAL---YLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETE 440 (454) Q Consensus 368 ~~g~~T~NE~R~~~g~~p~----~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 440 (454) +-+-...+..|- -+.|.. +....-++..-. .++++ -.+..... T Consensus 461 -------~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~i--------------------rs~ee---v~~~r~qr 510 (555) T protein:vir:98 461 -------GNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELI--------------------VPGNQ---VALIRKQR 510 (555) T ss_pred -------HHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCcccc--------------------CCHHH---HHHHHHHH Confidence 111111121110 000100 000000000000 00000 00000000 Q ss_pred ccHHHH-----HHHHH---hcC Q lcl|Aclame:pro 441 HDAVKA-----MFRGI---LKK 454 (454) Q Consensus 441 ~~~~~a-----~~~~~---~~~ 454 (454) +.+..+ ++.+. .|. T Consensus 511 ~~~~q~~~~a~~~~q~~~~~~~ 532 (555) T protein:vir:98 511 ADQQQAAQQAALLNQGADTAAK 532 (555) T ss_pred HHHHHHHHHHHHHHHHHHHHHH Confidence 000000 11111 111 No 265 >protein:vir:107404 Length: 555 # NCBI annotation: Bbp21 # Family: family:all:481 # MgeID: mge:1537 # MgeName: BPP-1 # Cross-refs: genbank:acc:NP_958690;genbank:gi:41179382;genbank:GeneID:2717198 Probab=33.95 E-value=1.3 Score=19.92 Aligned_cols=404 Identities=11% Similarity=0.056 Sum_probs=152.5 Q ss_pred Ccchhhhh-cccc----ccccccCcccchhhhhhhhhhccccccCCccccHHHH---HhhHHHHHHHHHHHHhhc----- Q lcl|Aclame:pro 1 MWNLLRRT-RKNQ----KSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAV---LSFHAVFACISLISQDIA----- 67 (454) Q Consensus 1 m~n~f~r~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~i~~ia~~va----- 67 (454) |-+--.++ ...+ +..+..-..-|.....+.-.-......... ...+.. .=+++-..|++.+|..+. T Consensus 1 M~~~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~-~~~~~~~~~~~dst~~~a~~~LAa~L~~~ltp 79 (555) T protein:vir:10 1 MAEQTERKLLLSRWGQLRTERESWMSHWKEISDYLLPRAGRFFVQDR-NRGEKRHNNILDNTGTRALRVLAAGMMAGMTS 79 (555) T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCcccccccCCCC-CcchhcccccccccHHHHHHHHHHHHHHhhcC Confidence 55522110 0000 001111111222222221100000000000 000111 113444456666665553 Q ss_pred -ccce-EEEeccccccce-eh------hhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEe Q lcl|Aclame:pro 68 -KMRL-RLMQTDAQGIRR-ET------RRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRIL 138 (454) Q Consensus 68 -~~~~-~~~~~~~~~~~~-~~------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l 138 (454) +-|| ++-..+.+.... .. -.+.+...+.+ -+++.-+..++.++..+|++.+++..+.. ....+..+ T Consensus 80 p~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~----snf~~~~~~~~~~Lv~~G~a~l~~~~d~~-~~~rf~~~ 154 (555) T protein:vir:10 80 PARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAK----SNTYRALHSMYEELGAFGTASSIVLPDFD-AVVYHHSL 154 (555) T ss_pred CCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhhCceEEEEecCCC-ceEEEEEe Confidence 2243 222111111110 00 01112222333 23455566778899999999998765543 34566677 Q ss_pred cCcceEEEECCCCceeeEEec-------------------------cccccccc-------------------------- Q lcl|Aclame:pro 139 DWNRVEPLVADDGEVFYRITP-------------------------DRNCGITE-------------------------- 167 (454) Q Consensus 139 ~~~~~~~~~~~~g~~~~~~~~-------------------------~~~~~~~~-------------------------- 167 (454) +...+.+..+..|.+--.|.. ........ T Consensus 155 pl~~~~v~~d~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~~~~~~~~~~~~p~~ 234 (555) T protein:vir:10 155 TAGEYAIAADNQGRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVIHAIEPRADRDPSKRDDRNMAWK 234 (555) T ss_pred ecceeEEeeCCCCCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEEEEEeeccCcCcCCCCccccceE Confidence 777777777776643111100 00000000 Q ss_pred eeE---------------EehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCC Q lcl|Aclame:pro 168 AVT---------------VPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSIT 232 (454) Q Consensus 168 ~~~---------------~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s 232 (454) .+. |..-..+.+|.....+..||.||.+.+...+.......+.......-...|...+.-+.. . T Consensus 235 s~~~~~~~d~~~vl~esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~~v~~~~~-~ 313 (555) T protein:vir:10 235 SVYFEPGADETRTLRESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNPPLQLPVSAK-N 313 (555) T ss_pred EEEEEeccCCccccccCCcccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccc-c Confidence 000 111223445555556778999999999999999999999888888888777766433221 1 Q ss_pred HHHHHHHHHHHHHHhcCcccCCc-eecC--CCceeeeccccchhhH-HHHHHHHHHHHHHHHhccchhhhcccccccccC Q lcl|Aclame:pro 233 EENAKKLKSNWDSGYTGENAGKT-AILS--NGAKYNPTTFSPVDSQ-TVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDN 308 (454) Q Consensus 233 ~e~~~~~~~~~~~~~~g~n~g~~-~vl~--~g~~~~~l~~~~~d~~-~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n 308 (454) .. + +..- |++ .+.. ++-.+.++-....|.+ ..+..+.....|..+|=..-.......+...-| T Consensus 314 ~~--------~-~~~p----gg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~dlf~~l~~~~~~~~T 380 (555) T protein:vir:10 314 QD--------I-STVP----GGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASFYADLFLMLANGTNPQMT 380 (555) T ss_pred cc--------c-eecc----ccccccccCCCCcceecccccccchHHHHHHHHHHHHHHHHHhhcchhhhccCCCCCccc Confidence 10 1 1111 111 1111 1112233222222333 345578889999999966543322222322334 Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHH------------Hh-hcCcc-----cceeeecchhhhhcCHHH-HHHHHHHHH Q lcl|Aclame:pro 309 VEALE--QQYYSQCLQTLIESIELLLD------------EA-LETGE-----NESTEFDVTTLLRMDSER-RMKTLGDAV 367 (454) Q Consensus 309 ~e~~~--~~~~~~~i~P~~~~ie~~l~------------~~-l~~~~-----~~~~~f~~~~l~~~d~~~-~~~~~~~~~ 367 (454) +++.+ ..-....+.|....+..+|- +. ++++. +..+.+.+.+.+....+. .+..+...+ T Consensus 381 AtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~~i~~~l 460 (555) T protein:vir:10 381 ATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATNSVDRFV 460 (555) T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHHHHHHHH Confidence 44332 22234455555555554443 22 22221 122333333322211110 011111111 Q ss_pred hCCCcCHHHHHHHhcCCCC----CCcccc---ccccccccccccccccccccCCCccCcccCCCCCCcccCccccccccc Q lcl|Aclame:pro 368 KNTLLTPNEARKRENLPPL----AGGDAL---YLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETE 440 (454) Q Consensus 368 ~~g~~T~NE~R~~~g~~p~----~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 440 (454) +-+-...+..|- -+.|.. +....-++..-. .++++ -.+..... T Consensus 461 -------~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~i--------------------rs~ee---v~~~r~qr 510 (555) T protein:vir:10 461 -------GNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELI--------------------VPGNQ---VALIRKQR 510 (555) T ss_pred -------HHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCcccc--------------------CCHHH---HHHHHHHH Confidence 111111121110 000100 000000000000 00000 00000000 Q ss_pred ccHHHH-----HHHHH---hcC Q lcl|Aclame:pro 441 HDAVKA-----MFRGI---LKK 454 (454) Q Consensus 441 ~~~~~a-----~~~~~---~~~ 454 (454) +.+..+ ++.+. .|. T Consensus 511 ~~~~q~~~~a~~~~q~~~~~~~ 532 (555) T protein:vir:10 511 ADQQQAAQQAALLNQGADTAAK 532 (555) T ss_pred HHHHHHHHHHHHHHHHHHHHHH Confidence 000000 11111 111 No 266 >protein:vir:10447 Length: 536 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848294;genbank:gi:30387485;genbank:GeneID:1733984 Probab=33.93 E-value=1.3 Score=19.92 Aligned_cols=416 Identities=11% Similarity=-0.024 Sum_probs=148.9 Q ss_pred Ccchhhhhc------ccc----ccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhccc- Q lcl|Aclame:pro 1 MWNLLRRTR------KNQ----KSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKM- 69 (454) Q Consensus 1 m~n~f~r~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~- 69 (454) |.+ .|.. +.. +..+..-..-|.....+...-.......+......... .++-..|++.+|..+.+. T Consensus 1 m~~--~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~-dst~~~a~~~Laa~l~~~l 77 (536) T protein:vir:10 1 MAE--KRTGLAEDGAKSVYERLKNDRAPYETRAQNCAQYTIPSLFPKDSDNASTDYQTPW-QAVGARGLNNLASKLMLAL 77 (536) T ss_pred Ccc--hhhchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccc-cccHHHHHHHHHHHHHhhh Confidence 555 1100 000 00000001112222222211111000000000000111 233444555555444321 Q ss_pred ----ce-EEEecccc-cc----c---------eehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCC Q lcl|Aclame:pro 70 ----RL-RLMQTDAQ-GI----R---------RETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARG 130 (454) Q Consensus 70 ----~~-~~~~~~~~-~~----~---------~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G 130 (454) || ++...+.+ +. . -..-.+.++..+.+- +++.=+..++.++..+|++++++..+..+ T Consensus 78 tP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~s----nf~~~~~~~~~~L~~~G~a~ly~~e~~~~ 153 (536) T protein:vir:10 78 FPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESN----SYRVTLFEALKQLVVAGNVLLYLPEPEGS 153 (536) T ss_pred cCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhHCcEeEEEeeCCCC Confidence 33 11111000 00 0 000112223333333 34455667788889999999998655544 Q ss_pred ceeEEEEecCcceEEEECCCCcee------------------------------------eEEecccc------------ Q lcl|Aclame:pro 131 QIKELRILDWNRVEPLVADDGEVF------------------------------------YRITPDRN------------ 162 (454) Q Consensus 131 ~~~~l~~l~~~~~~~~~~~~g~~~------------------------------------~~~~~~~~------------ 162 (454) .+..+..++-..+.+..|..|.+- |....... T Consensus 154 ~~~~~~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~V~~~~~~~~~~~~~e~~ 233 (536) T protein:vir:10 154 NYNPMKLYRLSSYVVQRDAFGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHIYLDEASGEYLRYEEVE 233 (536) T ss_pred ceeeEEEEEcCeEEEeeCCCCCeeEEeeeeeccHHHHHHhhhhhhcccccccCcccceEEEEEEEEecCCCcEEEEEeec Confidence 444333334455555555544221 10000000 Q ss_pred --ccccc--eeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHH Q lcl|Aclame:pro 163 --CGITE--AVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKK 238 (454) Q Consensus 163 --~~~~~--~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~ 238 (454) ...+. ...|.....+.+|.....+..||.||.+.+...+.......+.......-...|...+.-+..... T Consensus 234 g~~v~~~~g~~~f~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g~~~~----- 308 (536) T protein:vir:10 234 GMEVQGSDGTYPKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAIVKMSMISSKVIGLVNPAGITQP----- 308 (536) T ss_pred CccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcccccch----- Confidence 00000 011223344666666677789999999999999999999988888876666665544432221111 Q ss_pred HHHHHHHHhcCcccCCc-eecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH-- Q lcl|Aclame:pro 239 LKSNWDSGYTGENAGKT-AILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ-- 315 (454) Q Consensus 239 ~~~~~~~~~~g~n~g~~-~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~-- 315 (454) .....+.+ |.+ ....+.+...++...+.=.-..+..+.....|..+|-+.. +... ++..-|+++.+.. T Consensus 309 -----~~~~~~~~-g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~--l~~~-~~~r~TAtEV~~r~~ 379 (536) T protein:vir:10 309 -----RRLTKAQT-GDFVTGRPEDISFLQLEKQADFTVAKAVSDAIEARLSFAFMLNS--AVQR-TGERVTAEEIRYVAS 379 (536) T ss_pred -----hhhccCCC-cceecCCcccceeeeccccccchHHHHHHHHHHHHHHHHHhhhh--cccC-CCCCccHHHHHHHHH Confidence 11111111 111 1123444555555443322235566888889999985542 2212 2222244433222 Q ss_pred HHHHHHHHHHHHHHHHHH------------H-hhcCccc-ceeeecchhhh----h-cCHHHHHHHHHHHHhCC------ Q lcl|Aclame:pro 316 YYSQCLQTLIESIELLLD------------E-ALETGEN-ESTEFDVTTLL----R-MDSERRMKTLGDAVKNT------ 370 (454) Q Consensus 316 ~~~~~i~P~~~~ie~~l~------------~-~l~~~~~-~~~~f~~~~l~----~-~d~~~~~~~~~~~~~~g------ 370 (454) -....+.|....+..+|- + .++++.. ..++.++...+ + .+.+....++..+.+.+ T Consensus 380 E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~l~~~~~~la~~~P~~ld~ 459 (536) T protein:vir:10 380 ELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCVTAWAALAPMRDDP 459 (536) T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEEecHHHHHHHHHHHHHHHHHHHHHhhchhhhcc Confidence 223344444444444332 2 2233211 11222222111 1 12222222232222211 Q ss_pred CcCHHHH----HHHhcCCCC----CCccccccccc-cccccccccccccccCCCccCcccCCCCCCcc-cCcccccc Q lcl|Aclame:pro 371 LLTPNEA----RKRENLPPL----AGGDALYLQQQ-NYSLEALSRRDAREDPFASSGKTASVPQAVAA-SDGNKAIT 437 (454) Q Consensus 371 ~~T~NE~----R~~~g~~p~----~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~ 437 (454) .+..+++ -+.+|.+|. +..+.--+... .................++....++....... .-|-+... T Consensus 460 ~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 536 (536) T protein:vir:10 460 DINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGMDNGAAALAQGMAAQATASPEAMAAAADSVGLQPGI 536 (536) T ss_pred cCCHHHHHHHHHHHcCCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhhhhccccCCCC Confidence 1223332 233455331 11000000000 00000000000000000000000000000000 00000000 No 267 >protein:vir:95014 Length: 491 # NCBI annotation: structural protein # Family: family:all:584 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224035;genbank:gi:62327322;genbank:GeneID:5176842 Probab=33.14 E-value=1.4 Score=19.82 Aligned_cols=396 Identities=12% Similarity=0.054 Sum_probs=154.0 Q ss_pred Ccchhhhhcccccc--ccccCcccchhhhhhhhh--------hccccccCCc-cccHHHHHh----hHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MWNLLRRTRKNQKS--GRDVREAGWTSLFQAVAE--------PFAGAWQQGV-KADPEAVLS----FHAVFACISLISQD 65 (454) Q Consensus 1 m~n~f~r~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~----~~~v~~~i~~ia~~ 65 (454) |..-=.+......+ ....-...|.-+...++. .+........ ....+.++. .+++...++.++.. T Consensus 1 ~~~~~~~~~~V~~~hp~y~a~~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~~tl~~l~G~ 80 (491) T protein:vir:95 1 MLTANGQGSGVKTKHREWLHYAPKWQKVRHALAGDLVGYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTRRTLSGMVGS 80 (491) T ss_pred CcccCCccCCCCccCHHHHHHHHHHHHHHHHhcCcchhhcccCCCcCCCCCCCHHHHHHHHhcccCCChHHHHHHHHhch Confidence 32211111000000 000000011100000000 0000000000 000122222 34455566666666 Q ss_pred hcccceEEEeccccccceehhhhHHHHhhhhc-cccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCc-----------ee Q lcl|Aclame:pro 66 IAKMRLRLMQTDAQGIRRETRRGDIARLCRRP-NAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQ-----------IK 133 (454) Q Consensus 66 va~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p-n~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~-----------~~ 133 (454) +.+-|..+- ....+..++.+. -...+-.+|.+.++...+.+|.+++++-....+. -- T Consensus 81 vfrk~p~~~-----------~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~Ade~~~~~rP 149 (491) T protein:vir:95 81 VMRKEPEIN-----------IPKELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETAAATAAEQNAGLLNP 149 (491) T ss_pred hhcCCceee-----------ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCeEEEEEecCCCcccCHHHHHHhcCCc Confidence 655555441 111223344333 3457889999999999999999999987654331 11 Q ss_pred EEEEecCcceEEEEC----------------------C-CC-----ceeeEEecc-----------ccccccce----eE Q lcl|Aclame:pro 134 ELRILDWNRVEPLVA----------------------D-DG-----EVFYRITPD-----------RNCGITEA----VT 170 (454) Q Consensus 134 ~l~~l~~~~~~~~~~----------------------~-~g-----~~~~~~~~~-----------~~~~~~~~----~~ 170 (454) .+..+.|..|--+.. . ++ ...|++... .....+.. .. T Consensus 150 y~~~~~~~~IinW~~~~v~g~~~L~~v~l~E~~~~~d~~~~f~~~~~~qyRvL~l~~~g~~~~~v~r~~~~g~~~~~~~~ 229 (491) T protein:vir:95 150 TIAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYHEPGNEFETKYGEQYRVLDIDTDGNYRQRLFRFDAEGGAQEEVVE 229 (491) T ss_pred EEEEechhhhcCceeeeeCCceeeeEEEEEEeEEeecCCCCcccceEEEEEEEeecCCCceEEEEEEEcCCCcceeeeee Confidence 234444444321110 0 00 011111000 00000000 00 Q ss_pred E-e------hh--heEEeecCCCcCcccccchhhhh-HhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHH Q lcl|Aclame:pro 171 V-P------AR--EVIHDRFNCFFHPLIGLPPVYAA-GLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) Q Consensus 171 ~-~------~~--~vih~~~~~~~~~~~G~s~l~~~-~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~ 240 (454) + + -. .++.+- ....+...|.||+..+ .-.+..+.....+... +...+.|..+++-..+.+++..+... T Consensus 230 ~~~~~g~~~l~~IPfv~~~-~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~-l~~~~~P~l~~~G~d~~~~~~~~~~~ 307 (491) T protein:vir:95 230 IYPDLGESLRGVIPFTFIG-ATNNDATIDDAPLLPLAELNIGHYRNSADNEES-SFVVGQPTLFIYPGDNLTPQSFKEAN 307 (491) T ss_pred eeecCCCcccCeeEEEEEe-cCCCCCCCCcCchHHHHHHHHHHhhhhhHHHHH-HHHcccceeeeecCcccCcchhhccC Confidence 0 0 00 111121 1233445678887654 4445555555554444 55556787777654444443333221 Q ss_pred HHHHHHhcCcccCCceecCCCceeeeccccchhhH--HHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHHHHH Q lcl|Aclame:pro 241 SNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQ--TVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYS 318 (454) Q Consensus 241 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~--~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~~~~ 318 (454) . ....-|.++ .+.++.|.++.-+...+..+. .++-++....++.+. ++--. ..-.++.......... T Consensus 308 ~--~~i~~g~~~--~~~lP~~~~~~~ie~~~~~~~~~~l~~~e~qm~~~Ga~------l~~~~-~~~Ta~~~~~~~~~~~ 376 (491) T protein:vir:95 308 P--NGIKFGSRC--GHNLGYGGSAQLIQAGENNLARQNMLDKEQQAIQIGAQ------LITPS-QQITAESARIQRGADT 376 (491) T ss_pred c--ceeEecCcC--CcCCCCCCccceeecCcchHHHHHHHHHHHHHHHHHHH------hccCC-cchhHHHHHHHHHHhh Confidence 1 111223333 456666555544443332221 122222333333221 22111 1111223333344456 Q ss_pred HHHHHHHHHHHHHHHHhhc-----Cc--cc--ceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhc---CCCC Q lcl|Aclame:pro 319 QCLQTLIESIELLLDEALE-----TG--EN--ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKREN---LPPL 386 (454) Q Consensus 319 ~~i~P~~~~ie~~l~~~l~-----~~--~~--~~~~f~~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g---~~p~ 386 (454) +.|.-++..+++.+++.|- .+ .. ..+..+.+-....-.......+-++++.|.++.-..++.+- +... T Consensus 377 S~L~~~a~~~e~al~~~l~~~a~w~G~~~~~~v~i~~n~dF~~~~~~~~~~~all~~~~~G~is~~t~~~~L~~~~vl~~ 456 (491) T protein:vir:95 377 SVMATIARNVSQAYTDALRWVAMMLGKPEDSEVEFQLNMDFFLQPMTAQDRAAWMADINAGLLPATAYYAALRKAGVTDW 456 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccccccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCc Confidence 7777888888888887651 11 12 23344444333332233577788888999999888877553 3321 Q ss_pred CCcccc-ccccccccccccccccccccCCCccCcccCCCCCCcc Q lcl|Aclame:pro 387 AGGDAL-YLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAA 429 (454) Q Consensus 387 ~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (454) ...+.. -+.....+++.. .+..+......+..++ T Consensus 457 ~~e~~~~~ie~~~~~~~~~---------~~~~~~~~~~~~~~~~ 491 (491) T protein:vir:95 457 TDEDILNAIEDAPLPSGAV---------TQVAGEIPQAAQQQQE 491 (491) T ss_pred cHHHHHHHHHhcCCCCCcc---------ccccccchhhhhhccC Confidence 111111 010000000000 0000000000000000 No 268 >protein:vir:95315 Length: 559 # NCBI annotation: putative head-to-tail-joining protein # Family: family:all:481 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512261;genbank:gi:89152428;genbank:GeneID:3952984 Probab=32.45 E-value=1.4 Score=19.74 Aligned_cols=421 Identities=13% Similarity=0.140 Sum_probs=157.5 Q ss_pred Ccchhhhhcccc----ccccccCcccchhhhhhhhhhccccccCCc-cccHHHH--HhhHHHHHHHHHHHHhhc------ Q lcl|Aclame:pro 1 MWNLLRRTRKNQ----KSGRDVREAGWTSLFQAVAEPFAGAWQQGV-KADPEAV--LSFHAVFACISLISQDIA------ 67 (454) Q Consensus 1 m~n~f~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~v~~~i~~ia~~va------ 67 (454) |..-..++.+.. +..+..-..-|.....+.- |......... ....... .=+++-..|++.+|..+. T Consensus 1 m~~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~l-P~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~Las~l~~~ltpp 79 (559) T protein:vir:95 1 MAETTKERLNKQFAQLESERQSFEPHWRELSDYIN-PRGSRFLTSEVNRNDRRNTRIIDSTGTMAARTLASGMMSGITSP 79 (559) T ss_pred CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cccCCcCCCCCCcccccccccccchHHHHHHHHHHHHHHhhcCC Confidence 554332221111 1111111122322222211 1111111000 0000000 012334456666555543 Q ss_pred ccce-EEEeccccccce-eh------hhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEec Q lcl|Aclame:pro 68 KMRL-RLMQTDAQGIRR-ET------RRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILD 139 (454) Q Consensus 68 ~~~~-~~~~~~~~~~~~-~~------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~ 139 (454) +-|| ++-..+.+.... .. -.+.+...+.+- +++.-+..++.++.++|++.+++..+.. ....+.+++ T Consensus 80 ~~~WF~l~~~d~~~~e~~~v~~~L~~ve~~~~~~l~~s----nf~~~~~~~~~~L~~~Gta~l~~~~d~~-~~~r~~~~~ 154 (559) T protein:vir:95 80 ARPWFRLATPDPEMMDYGPVKLWLEAVQNRMNDMFNKS----NLYQSLPQLYGSLGTYSTGAMAVLDDDE-DIIRTMPFP 154 (559) T ss_pred CCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhhCceeeEeecCCC-ceeEEEEee Confidence 2233 222112111110 00 011122233333 3444566778889999999998765443 456677788 Q ss_pred CcceEEEECCCCceeeEEec--------------c----------ccccccce--------------------------- Q lcl|Aclame:pro 140 WNRVEPLVADDGEVFYRITP--------------D----------RNCGITEA--------------------------- 168 (454) Q Consensus 140 ~~~~~~~~~~~g~~~~~~~~--------------~----------~~~~~~~~--------------------------- 168 (454) ..++.+..+..|.+--.|.. . ......+. T Consensus 155 l~~~~v~~d~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~~~~~~~~~~~~pf~s 234 (559) T protein:vir:95 155 IGSYYLANSPRGSVDTCFRKFSMTVRQLVQEFGLNNVSESVKSMWESGTYEKWIEVMHSVYPNIDRDTSKLDSKNKPFKS 234 (559) T ss_pred cCeEEEeeCCCCCeEEEEEeEecCHHHHHHHcCcccCCHHHHHHHhcCCCCCeEEEEEEEeccccccccccccccceEEE Confidence 88888877777643211110 0 00000000 Q ss_pred eEE---------------ehhheEEeecCCCcCcccccc-hhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCC Q lcl|Aclame:pro 169 VTV---------------PAREVIHDRFNCFFHPLIGLP-PVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSIT 232 (454) Q Consensus 169 ~~~---------------~~~~vih~~~~~~~~~~~G~s-~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s 232 (454) +.+ ..-..+-+|.....+..||.| |.+-+...+.......+...........|.+.+. .+.. T Consensus 235 ~~~e~~~~~~~~l~esg~~e~P~~~~Rw~~~~ge~YGrg~P~~~al~d~k~L~~l~~~~l~~~~~~~~pp~~v~--~~~~ 312 (559) T protein:vir:95 235 VYYEVGGDNDKLLRESGFDEFPIMAPRWEVNGEDVYGSSCPGMLALGPVKALQLLQKRKSQLIDKATNPPMVAP--TSLK 312 (559) T ss_pred EEEEecCCCceeeecCCcccCCccceeeeecCCccccccchHHHhhHHHHHHHHHHHHHHHHHHHHhcCceecc--cccc Confidence 000 111113334444556789999 8999999999999999999998888888876543 2211 Q ss_pred HHHHHHHHHHHHHHhcCcccCCceecC---CCceeeeccc-cchhhHHHHHHHHHHHHHHHHhccchhh-hccccccccc Q lcl|Aclame:pro 233 EENAKKLKSNWDSGYTGENAGKTAILS---NGAKYNPTTF-SPVDSQTVEQLKMTAEIVCSVFRVPAYK-IGVGQPPSSD 307 (454) Q Consensus 233 ~e~~~~~~~~~~~~~~g~n~g~~~vl~---~g~~~~~l~~-~~~d~~~~e~~~~~~~~Ia~~fgvp~~~-lg~~~~~~~~ 307 (454) ... .+.. .|++.++. ++-.++++-. ++.-....+..+.....|..+|-..... +...+.. .- T Consensus 313 ~~~--------~~l~----pgg~~~~~~~~~~~~i~p~~~~~~~~~~~~~~i~~~~~rI~~af~~d~~~~l~~r~~~-rv 379 (559) T protein:vir:95 313 NQR--------ASLL----PGDITYIDQITGQDGFRPAYLVNPSTADLVADIQDTRQIINSAYFVDLFMMLQNINTR-SM 379 (559) T ss_pred ccc--------eeee----ccceeeeCCCCCcccceeecccccchHHHHHHHHHHHHHHHHHhhhhhHHHhhcCCCC-CC Confidence 000 0111 12222221 1123444422 3332223344577899999999886643 2222221 22 Q ss_pred CHHHHHHH--HHHHHHHHHHHHHHHH------------HHHh-hcCcc-----cceeeecchhhhhcCH--------HHH Q lcl|Aclame:pro 308 NVEALEQQ--YYSQCLQTLIESIELL------------LDEA-LETGE-----NESTEFDVTTLLRMDS--------ERR 359 (454) Q Consensus 308 n~e~~~~~--~~~~~i~P~~~~ie~~------------l~~~-l~~~~-----~~~~~f~~~~l~~~d~--------~~~ 359 (454) |+++.+.. -....+.|....+..+ +.+. ++++. +..+.+.+.+.+.... ... T Consensus 380 TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~l~~~~i~v~~is~La~aqk~~~~~~i~~~ 459 (559) T protein:vir:95 380 PVEAVIEMKEEKLLMLGPVLERLNDECLNPLIDRSFSMMVRKNMLPPPPDVMEGMPLKVEYISVMAQAQKSIGLSSLAST 459 (559) T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccCcceEEEeecHHHHHHHHHHHHHHHHH Confidence 33332222 1223344544444444 3332 12221 1234444443332111 111 Q ss_pred HHHHHHHHhCC-----CcCHHHH----HHHhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCccc Q lcl|Aclame:pro 360 MKTLGDAVKNT-----LLTPNEA----RKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAAS 430 (454) Q Consensus 360 ~~~~~~~~~~g-----~~T~NE~----R~~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (454) +..+..+-+.+ .+..+++ -+.+|.|+. .+..+-. +...-.. .....+..+... ...... T Consensus 460 ~~~~~~laq~~Pevld~id~d~~~~~~a~~~Gvp~~----~irs~~e---v~~~rqq--r~~~qq~~q~~~---~~~~aa 527 (559) T protein:vir:95 460 VNFIGQLAQVKPEALDKLNVDQAIDAFADMSGVSPT----VIVPQEQ---VEQARQQ--RAQQQQQQQMMA---MGMAAA 527 (559) T ss_pred HHHHHHHhccChhhhhcCCHHHHHHHHHHHhCCchh----hcCCHHH---HHHHHHH--HHHHHHHHHHHH---HHHHHH Confidence 12222221111 1233332 233444421 0000000 0000000 000000000000 000000 Q ss_pred Cccccccccc---ccHHHHHHHHHhcC Q lcl|Aclame:pro 431 DGNKAITETE---HDAVKAMFRGILKK 454 (454) Q Consensus 431 d~~~~~~~~~---~~~~~a~~~~~~~~ 454 (454) ..-+..++.+ .++..++...+--- T Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ 554 (559) T protein:vir:95 528 QGVKTLSEAKTSDPSVLSAMANAVSGQ 554 (559) T ss_pred HhhhccccccCCChhHHHHHHHhhcCc Confidence 0000000100 01111111111010 No 269 >protein:vir:96988 Length: 516 # NCBI annotation: 29 # Family: family:all:481 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654130;genbank:gi:108862014;genbank:GeneID:5075937 Probab=30.61 E-value=1.6 Score=19.52 Aligned_cols=403 Identities=9% Similarity=0.027 Sum_probs=144.5 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhccccccCCccccHHHHHhhHHHHHHHHHHHHhhc------ccceEEE Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIA------KMRLRLM 74 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va------~~~~~~~ 74 (454) +|+-++..+.. -..-|.....+....+. ....+...+. ..+ .++-..|++.+|..+- +-||-=. T Consensus 19 r~~~L~~~R~~-------~e~~w~e~a~~~lP~~~-~~~~~~~~~~-~~~-dstg~~a~~~LAa~l~~~ltpp~~~WF~L 88 (516) T protein:vir:96 19 LWEKFSNKRSS-------FLDRAKHYSKLTLPYLM-NDKGDNETSQ-NGW-QGVGAQATNHLANKLAQVLFPAQRSFFRV 88 (516) T ss_pred HHHHHHHHhhH-------HHHHHHHHHHhhccccc-CCCCCccccC-Ccc-cchHHHHHHHHHHHHHhhhcCCCCccccc Confidence 33333221111 00111111111111000 0000000010 111 2333456665555543 2244211 Q ss_pred ecccc--------ccce-eh------hhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEEec Q lcl|Aclame:pro 75 QTDAQ--------GIRR-ET------RRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILD 139 (454) Q Consensus 75 ~~~~~--------~~~~-~~------~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~l~ 139 (454) ...+. +... .. -.+.+...+.+- +++.=+..++.++..+|++++++- .++. ...|||. T Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~s----nf~~~~~~~~~~L~~~G~a~l~~d--~~~~-~~~~pl~ 161 (516) T protein:vir:96 89 DLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQR----QFRPAVVEAFKHLIVAGSCMLYKP--SKGA-ISAIPMH 161 (516) T ss_pred ccChhHHhhccccCchhHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhHCeEeEEec--CCCC-EEEEEcC Confidence 11110 0000 00 011122223333 445556677788899999998863 3332 4456663 Q ss_pred CcceEEEECCCCceeeEE--------------------------------------eccc------------cccccce- Q lcl|Aclame:pro 140 WNRVEPLVADDGEVFYRI--------------------------------------TPDR------------NCGITEA- 168 (454) Q Consensus 140 ~~~~~~~~~~~g~~~~~~--------------------------------------~~~~------------~~~~~~~- 168 (454) .+.+..|..|.+.-.+ .... ....+.. T Consensus 162 --~y~v~~d~~G~v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~~~~~~~d~~~~~~es 239 (516) T protein:vir:96 162 --HYVVNRDTNGDLLDIILLQEKALRTFDPATRAVVEVGLKGKKCKEDDSVKLYTHAKYLGDGFWELKQSADDIPVGKVS 239 (516) T ss_pred --eEEEeeCCCCCeeeehhhhHhhHHHHHHhhhhhhhhhhhhhhcCCCCceEEEEeeeeeCCceeEEEEEeCceeecccc Confidence 3444455444221110 0000 0000000 Q ss_pred -eEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 169 -VTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGY 247 (454) Q Consensus 169 -~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~~~~~ 247 (454) +.+.....+..|.....+..||.||.+-+...+.......+.......-...|.+.+.-+.... ..+.. T Consensus 240 ~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g~~~----------~~~l~ 309 (516) T protein:vir:96 240 KIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAVARGAALMADIKYLIRPGAQTD----------VDHFV 309 (516) T ss_pred ccccccCCeeeeeeeecCCCCcccchHHHhhHHHHHHHHHHHHHHHHHHHhcCCccccCcccccc----------hhhhc Confidence 0112223455566666677999999999999999999999988888777776666443222111 11222 Q ss_pred cCcccCCceecCCCceeeecccc-chhhH-HHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHH--HHHHHHHHH Q lcl|Aclame:pro 248 TGENAGKTAILSNGAKYNPTTFS-PVDSQ-TVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ--QYYSQCLQT 323 (454) Q Consensus 248 ~g~n~g~~~vl~~g~~~~~l~~~-~~d~~-~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~--~~~~~~i~P 323 (454) .|.+ | .++-...-.+.++... ..+.+ ..+..+.....|..+|=+.....-..+. -|+++.+. .-....+.| T Consensus 310 ~~~~-g-~i~~g~~~~v~~~q~~~~~d~~~~~~~i~~~~~rI~~af~~~~l~~r~~~r---vTAtEV~~r~~E~~~~LGp 384 (516) T protein:vir:96 310 NSGT-G-EVVTGVEEDIHIVQLGKYADLTPISAVLEVYTRRIGVVFMMETMTRRDAER---VTAVEIQRDALEIEQNMGG 384 (516) T ss_pred cCCC-c-eeecCCcccceeeecCcccchhHHHHHHHHHHHHHHHHHhhhhhccCCCcc---ccHHHHHHHHHHHHHHhhh Confidence 2222 1 1222222233333322 23333 3455688888898988654322212222 24444332 234456777 Q ss_pred HHHHHHHHHHHhhcC-------cc--cceeeecchhhhhcCHHHHH---HHHHHHHhC-C-CcC-HHHHHHHhcCCCCC- Q lcl|Aclame:pro 324 LIESIELLLDEALET-------GE--NESTEFDVTTLLRMDSERRM---KTLGDAVKN-T-LLT-PNEARKRENLPPLA- 387 (454) Q Consensus 324 ~~~~ie~~l~~~l~~-------~~--~~~~~f~~~~l~~~d~~~~~---~~~~~~~~~-g-~~T-~NE~R~~~g~~p~~- 387 (454) ....+..+|-.-|+. +. ...++..+...+ +.-.++ +.+...++. | +.- .-++...++.+.+- T Consensus 385 v~~rl~~Ell~Pli~r~l~~~~p~lp~~~v~~~~vs~l--~~l~r~~~~~~i~~~~~~i~~~~~~~p~v~d~id~d~~~~ 462 (516) T protein:vir:96 385 VYSLFATTMQSPVAMWGLLEAGESFTSDLVDPVIITGI--EALGRMAELDKLANFAQYMSLPLQWPEPVLAAVKWPDYMD 462 (516) T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccccceeechH--HHHHHHHHHHHHHHHHHHHHHHhcCChhHHhcCCHHHHHH Confidence 777776665432221 10 111111111100 000111 111111110 0 000 01122221111100 Q ss_pred C-ccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccccccccccHHHHHHHHHhcC Q lcl|Aclame:pro 388 G-GDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDAVKAMFRGILKK 454 (454) Q Consensus 388 ~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a~~~~~~~~ 454 (454) . .+.+-+|...+.-+.... ....+....+... ..-+....+...+.++-+|+ T Consensus 463 ~~a~~~Gvp~~~irs~eev~--~~~~~~~~~q~~~-------------~~a~~~~~~~~~~~~~~~~~ 515 (516) T protein:vir:96 463 WVRGQISAELPFLKSAEEMA--QEQEAQMQAQQAQ-------------MLEEGVAKAVPGVIQQELKE 515 (516) T ss_pred HHHHHhCCCccccCCHHHHH--HHHHHHHHHHHHH-------------HHHHHhhhhhhHHhhccccc Confidence 0 000111111111000000 0000000000000 00000001111122222222 No 270 >protein:vir:100039 Length: 522 # NCBI annotation: T7-like head-to-tail connector # Family: family:all:481 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214201;genbank:gi:61806424;genbank:GeneID:3294719 Probab=29.80 E-value=1.6 Score=19.42 Aligned_cols=400 Identities=12% Similarity=0.024 Sum_probs=141.8 Q ss_pred CcchhhhhccccccccccCcccchhhhhhhhhhcccc---ccCCccccHHHHHhhHHHHHHHHHHHHhhc------ccce Q lcl|Aclame:pro 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGA---WQQGVKADPEAVLSFHAVFACISLISQDIA------KMRL 71 (454) Q Consensus 1 m~n~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~i~~ia~~va------~~~~ 71 (454) .|+-++..+. .-..-|.....+...-.... ...+.. ...... +++-..|++.+|..+. +-|| T Consensus 6 r~~~L~~~R~-------~~e~~w~e~~~~tlP~~~~~~~~~~~~~~-~~~~~~-dstg~~a~~~LAa~l~~~ltpp~~~W 76 (522) T protein:vir:10 6 RYNQLTTARQ-------MFLDKAVECSELTLPYLIDDDISSRPNHK-SLTVPW-QSVGAKCCVTLAAKLMLAVLPPQTSF 76 (522) T ss_pred HHHHHHHHhh-------HHHHHHHHHHHHhhhcccCCCCCCCcccc-cccccc-cchHHHHHHHHHHHHHHhhcCCCCcc Confidence 2222221111 11112222222221100000 000000 001111 2333445555555443 2344 Q ss_pred -EEEecccc-ccc--e----------ehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCCceeEEEE Q lcl|Aclame:pro 72 -RLMQTDAQ-GIR--R----------ETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRI 137 (454) Q Consensus 72 -~~~~~~~~-~~~--~----------~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G~~~~l~~ 137 (454) ++...+.+ +.. . +.-.+.+...+.+- +++.=+..++.|+..+|++++++-.+ + ...+| T Consensus 77 F~l~~~d~~l~~~~~~~~~~~v~~~l~~ve~~~~~~l~~s----nf~~~~~~~~~~L~~~G~a~ly~~~~--~--~~~~p 148 (522) T protein:vir:10 77 FKLQVRDDKLGEELDPQIRSELDLSFSKMERMIMDYIAAS----NDRVAVHQALKHLIVGGNALIFMGKD--G--LKTFP 148 (522) T ss_pred ccccCChHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhHCceeEEEcCC--C--ceEEE Confidence 22211110 010 0 00111222223333 45556777888899999999886432 1 23445 Q ss_pred ecCcceEEEECCCCcee--------------------------------------eEEeccccccccce----------- Q lcl|Aclame:pro 138 LDWNRVEPLVADDGEVF--------------------------------------YRITPDRNCGITEA----------- 168 (454) Q Consensus 138 l~~~~~~~~~~~~g~~~--------------------------------------~~~~~~~~~~~~~~----------- 168 (454) | ..+.+..|..|.+- |.........+... T Consensus 149 l--~~y~v~~d~~G~vd~i~r~~~~t~~ql~~~fg~~~~~~~~~~~~~~~~~v~v~~~v~p~~~~~~~~~~~~~~~~~~~ 226 (522) T protein:vir:10 149 L--TRYVINRDGDGNVLEIVTKELISRKVLDIELPEPKPNTGIDESSTTNDDVTIYTYVKLDKSSGRWVWHQEAFDKIIP 226 (522) T ss_pred c--ceEEEeeCCCCCeeEEEeeeeccHHHHHHhcchhccchhhhcccCCCCceEEEEEEEeeccCCceEEEEccCCcccc Confidence 4 34444455544321 11110000000000 Q ss_pred -----eEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHHHHHHHH Q lcl|Aclame:pro 169 -----VTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNW 243 (454) Q Consensus 169 -----~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~~~~~~~ 243 (454) ..+..-..+..|.....+..||.||...+...+.......+.......-...|.+.+.-+..... T Consensus 227 ~~~s~~g~~~~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~~~~~~~a~~p~~lv~~~~~~~~---------- 296 (522) T protein:vir:10 227 DSRSTAPKNASPWLPLRFNTVDGEDYGRGRVEEFLGDLKSLDGLSQSLIEGAAAASKVVFLVSPSSTTKP---------- 296 (522) T ss_pred ccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeecccccccc---------- Confidence 01111123444555556778999999999999999999999999988888888866543322111 Q ss_pred HHHhcCcccCCceec--CCCceeeeccccchhhH-HHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH--HHH Q lcl|Aclame:pro 244 DSGYTGENAGKTAIL--SNGAKYNPTTFSPVDSQ-TVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ--YYS 318 (454) Q Consensus 244 ~~~~~g~n~g~~~vl--~~g~~~~~l~~~~~d~~-~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~--~~~ 318 (454) .+...|.+ +.++. .+++...+++. ..+.+ ..+..+..+..|..+|- ++...++-.-|+++.+.. -.. T Consensus 297 ~~l~~~~~--~~~v~g~~~~v~~~~~~~-~~d~~~~~~~i~~~~~ri~~aFl-----~~~~~d~~rvTAtEV~~r~~E~~ 368 (522) T protein:vir:10 297 ATIAKAGN--GAIVQGRPEDVAVIQVGK-TADFSTAANMATAIEKRLLEAFL-----VMNVRNAERVTAEEVRLTQLELE 368 (522) T ss_pred ccccCCCC--cceecCCCccceeecccc-cccchHHHHHHHHHHHHHHHHHh-----hccCCCCCCCCHHHHHHHHHHHH Confidence 11112211 12222 23344444443 23444 34456778888888883 222222222344443322 233 Q ss_pred HHHHHHHHHHHHH------------HHHh-hcCcccce----eeecchhhhh--cCHHHHHHHHHHHHhC-C------Cc Q lcl|Aclame:pro 319 QCLQTLIESIELL------------LDEA-LETGENES----TEFDVTTLLR--MDSERRMKTLGDAVKN-T------LL 372 (454) Q Consensus 319 ~~i~P~~~~ie~~------------l~~~-l~~~~~~~----~~f~~~~l~~--~d~~~~~~~~~~~~~~-g------~~ 372 (454) ..+.|....+..+ +.+. +|++.... ....+-+.+. .+.+....++..+-+. | .+ T Consensus 369 ~~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~~~~~~v~~is~Laraq~~~~l~~~~~~i~~~~~p~~~~~~i 448 (522) T protein:vir:10 369 QQLGGIFSLLVIEFLIPYLNRTLLVLQRSNQIPKLPKDIVRPTIVAGVNALGRGQDRESLTAFVGTIAQTLGPEALMQYL 448 (522) T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhhCchhhhhcC Confidence 3444444444443 3332 23321111 1111111111 1112222222222110 0 11 Q ss_pred CHHH----HHHHhcCCCC---CCccccc-cccccccccccccccccccCCCccCcccCC-CCCCcccCcccccccccccH Q lcl|Aclame:pro 373 TPNE----ARKRENLPPL---AGGDALY-LQQQNYSLEALSRRDAREDPFASSGKTASV-PQAVAASDGNKAITETEHDA 443 (454) Q Consensus 373 T~NE----~R~~~g~~p~---~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 443 (454) ..++ +-+.+|.|+. -..+..- ...... .........+...+-.+..... ..+++ T Consensus 449 d~d~~~~~~a~~~Gvp~~~ivrt~eev~~~~q~~q--~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------- 511 (522) T protein:vir:10 449 NPLEAIKRLAAAQGIDVLNLVKTEQQLAEEQQAAQ--QQAAQQSLVDQAGQMTGSPLMDPTKNPQ--------------- 511 (522) T ss_pred CHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccccCccccHH--------------- Confidence 2222 2223344320 0000000 000000 0000000000000000000000 00000 Q ss_pred HHHHHHHHhcC Q lcl|Aclame:pro 444 VKAMFRGILKK 454 (454) Q Consensus 444 ~~a~~~~~~~~ 454 (454) ...++..--|+ T Consensus 512 ~~~~~~~~~~~ 522 (522) T protein:vir:10 512 LMDEEQPPMEE 522 (522) T ss_pred HHHHhCCCCCC Confidence 00000000011 No 271 >protein:vir:1538 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052106;swissprot:trembl:q9t110;genbank:gi:9634032;uniprot:Q9T110;genbank:GeneID:1262384 Probab=29.00 E-value=1.7 Score=19.32 Aligned_cols=417 Identities=10% Similarity=-0.049 Sum_probs=154.2 Q ss_pred Ccchhhhhcccc---------ccccccCcccchhhhhhhhhhcc-ccccCCccccHHHHHhhHHHHHHHHHHHHhhccc- Q lcl|Aclame:pro 1 MWNLLRRTRKNQ---------KSGRDVREAGWTSLFQAVAEPFA-GAWQQGVKADPEAVLSFHAVFACISLISQDIAKM- 69 (454) Q Consensus 1 m~n~f~r~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~va~~- 69 (454) |.+=-+.+..++ +..+..-..-|.....+...-.. ..+....... .... +++-..|++.+|..+.+. T Consensus 1 m~~~~~~~~~~~~~k~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~-~~~~-dst~~~a~~~Laa~l~~~l 78 (535) T protein:vir:15 1 MADSKRTGLGEDGAKATYDRLTNDRRAYETRAENCAQYTIPSLFPKESDNESTDY-TTPW-QAVGARGLNNLASKLMLAL 78 (535) T ss_pred CCccchhccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccc-cccc-cccHHHHHHHHHHHHHHhh Confidence 444322111110 00000001112222222111010 0000000000 0111 333445666655554321 Q ss_pred ----ceE-EEecc-------ccccc-e------ehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEeeCCCC Q lcl|Aclame:pro 70 ----RLR-LMQTD-------AQGIR-R------ETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARG 130 (454) Q Consensus 70 ----~~~-~~~~~-------~~~~~-~------~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~r~~~G 130 (454) ||- +-..+ .+... . ..-.+.+...+.+- +++.-+..++.++..+|++.+++.....+ T Consensus 79 tP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~s----nf~~~~~~~~~~L~~~G~a~l~~~~~~~~ 154 (535) T protein:vir:15 79 FPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESN----SYRVTLFECLKQLIVAGNALLYLPEPEGS 154 (535) T ss_pred cCCCcccccccChHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhhCceeEEeecCCCC Confidence 321 11100 00000 0 00112222223333 45556777788899999998887544332 Q ss_pred -ceeEEEEecCcceEEEECCCCcee------------------------------------eEEeccc-c---------- Q lcl|Aclame:pro 131 -QIKELRILDWNRVEPLVADDGEVF------------------------------------YRITPDR-N---------- 162 (454) Q Consensus 131 -~~~~l~~l~~~~~~~~~~~~g~~~------------------------------------~~~~~~~-~---------- 162 (454) .....||+ .++.+..+..|.+- |...... . T Consensus 155 ~~~f~~~pl--~~~~v~~d~~G~vd~i~r~~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~~~~~~e~ 232 (535) T protein:vir:15 155 YNPMKLYRL--SSYVVQRDAYGNVLQIVTRDQIAFGALPEDVRSAVEKAGGEKKMDEMVDVYTHVYLDEESGDYLKYEEV 232 (535) T ss_pred ceeeEEEEc--CeeEEeeCCCCCeeEEEEeEeecHHHHHHHHhHhhhccccccCCCCceeEEEEEEEecCCCcEEEEEEe Confidence 23344444 44555455444211 1100000 0 Q ss_pred ---cccc--ceeEEehhheEEeecCCCcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecCccCCHHHHH Q lcl|Aclame:pro 163 ---CGIT--EAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAK 237 (454) Q Consensus 163 ---~~~~--~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~~~~s~e~~~ 237 (454) ...+ ....+.....+..|.....+..||.||.+.+...+.......+.......-...|.+.+.-+...... T Consensus 233 ~g~~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~lv~~~g~~~~~--- 309 (535) T protein:vir:15 233 EDVEIDGSDATYPTDAMPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIGLVNPAGITQPR--- 309 (535) T ss_pred eCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecccccccch--- Confidence 0000 00112223456666666777899999999999999999999999999999988888765432222211 Q ss_pred HHHHHHHHHhcCcccCCceecCCCceeeeccccchhhHHHHHHHHHHHHHHHHhccchhhhcccccccccCHHHHHHH-- Q lcl|Aclame:pro 238 KLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQ-- 315 (454) Q Consensus 238 ~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~~~~~~~~n~e~~~~~-- 315 (454) +...|.+..-+.--.+++...++...++=.-..+..+.....|..+|-+. .+...+. ..-|+++.+.. T Consensus 310 -------~l~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~~~--~~~~~~~-~r~TAtEV~~r~~ 379 (535) T protein:vir:15 310 -------RLTKAQTGDFVPGRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAFMLN--SAVQRTG-ERVTAEEIRYVAS 379 (535) T ss_pred -------hcccCCceeeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhh--hcccCCC-ccccHHHHHHHHH Confidence 11112110001112345556665554432234555688888999998444 2222222 22244433322 Q ss_pred HHHHHHHHHHHHHHHH------------HHHh-hcCcc-cceeeecchhhhh-----cCHHHHHHHHHHHHhCC------ Q lcl|Aclame:pro 316 YYSQCLQTLIESIELL------------LDEA-LETGE-NESTEFDVTTLLR-----MDSERRMKTLGDAVKNT------ 370 (454) Q Consensus 316 ~~~~~i~P~~~~ie~~------------l~~~-l~~~~-~~~~~f~~~~l~~-----~d~~~~~~~~~~~~~~g------ 370 (454) -....+.|....+..+ +.+. ++++. ...++..+...+. .+.......+..+-+.+ T Consensus 380 E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~yis~La~aqr~~~~~~l~~~~~~la~~~P~~ld~ 459 (535) T protein:vir:15 380 ELEDTLGGVYSILSQELQLPLVRVLLKQLQATSQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCISAWAALAPMQGDP 459 (535) T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccceeEEEecHHHHHHHHHHHHHHHHHHHHHHhcChhhhhc Confidence 2333444444444443 3332 23321 1123344333222 12222222222222111 Q ss_pred CcCHH----HHHHHhcCCCC----CCccccccccccccccccccccccccCCCccCcccCCCCCCcccCccccccccccc Q lcl|Aclame:pro 371 LLTPN----EARKRENLPPL----AGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHD 442 (454) Q Consensus 371 ~~T~N----E~R~~~g~~p~----~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 442 (454) .+..+ ++.+.+|.|+. +..+.--....-... ...........+..... ...+++ +......--+.+ T Consensus 460 ~id~d~~~~~~a~~~Gvp~~~i~~~~eev~~~~~q~~~~--~~~~~~a~~~g~~~~~~--~~~~p~--~~~~~~~~~g~~ 533 (535) T protein:vir:15 460 DINLAVIKLRIANAIGIDTSGILLTDEQKQALMMQDAAQ--TGIENAAATGGAGVGAL--ATSSPE--AMQGAAAQAGLD 533 (535) T ss_pred cCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHH--HHHHHHHHHHHhhccch--hccChH--HHHHHHhccCCC Confidence 11222 22344555531 100000000000000 00000000000000000 000000 000000000000 Q ss_pred HH Q lcl|Aclame:pro 443 AV 444 (454) Q Consensus 443 ~~ 444 (454) +. T Consensus 534 ~~ 535 (535) T protein:vir:15 534 AT 535 (535) T ss_pred CC Confidence 01 No 272 >protein:vir:101418 Length: 569 # NCBI annotation: Prt # Family: family:all:9458 # MgeID: mge:1512 # MgeName: P1 # Cross-refs: genbank:acc:YP_006480;genbank:gi:46401636;genbank:GeneID:2777482 Probab=28.12 E-value=1.8 Score=19.21 Aligned_cols=433 Identities=9% Similarity=0.047 Sum_probs=158.1 Q ss_pred Ccc----------hhhhhcccc----ccccccCccc-chhhhhhhhhhcc-----c-cccCCccccHHHHHhhHHHHHHH Q lcl|Aclame:pro 1 MWN----------LLRRTRKNQ----KSGRDVREAG-WTSLFQAVAEPFA-----G-AWQQGVKADPEAVLSFHAVFACI 59 (454) Q Consensus 1 m~n----------~f~r~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~v~~~i 59 (454) ++. +|+|.-.+- ........++ ..+. ...+..+. . ..+.......+.+...|.+.+++ T Consensus 29 ~~~~~~~~~~~~~~~s~~g~p~~~~~~~~~~~~~~t~~~D~-~~~g~~~~~~~~~~pr~R~qiY~~~eeM~~~p~Ia~Al 107 (569) T protein:vir:10 29 LLSALAVHGGSGYLFSRAGAPVQLSGFLGGKPGDSGMAGDG-LVDGSRFIFDEVQLPEDRLQRYPLLEEMAVYSTIATAL 107 (569) T ss_pred hhhhheeecCcceEEeecCcchhhhhhhccCccccchhhhh-HHHHHHHHhhhccCchhHHHHHHHHHHHhcCchhhhhh Confidence 111 122211000 0000000000 0000 01111010 0 11111111223344578888888 Q ss_pred HH-HHHhhcc-----cceEEEec-cccccceehhhhHHHHhhhhccccCCHHHHHHHHHHHHHHhCCeEEEEe-eCCCCc Q lcl|Aclame:pro 60 SL-ISQDIAK-----MRLRLMQT-DAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKI-RNARGQ 131 (454) Q Consensus 60 ~~-ia~~va~-----~~~~~~~~-~~~~~~~~~~~~~~~~l~~~pn~~~~~~~f~~~~~~~~ll~G~~~i~~~-r~~~G~ 131 (454) ++ |..+++. --+-+... ..++...+........+-.+--+. ...-...+..++..+|.+|+.|- +.+.| T Consensus 108 niHVtaALggde~TGd~vfI~p~~~~~~a~~daakai~~el~~dl~~~--iNr~~~~lA~~~~aFGdsYaRiY~~~~~G- 184 (569) T protein:vir:10 108 NIHITHALSFDKKTGQTFSIVPVHNGNDSDYDAAQALCGELMNDIGRT--INKEVAGWAFIMSVFGVAYVRPYAKEGIG- 184 (569) T ss_pred hhhhheeecccccccceEEEEeecCCCCCcchHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHhhhhhheeeeccCCce- Confidence 87 4433331 11222211 111111111111111111111111 11235566778899999999884 33344 Q ss_pred eeEE---EEecCcceEEEECCCCceeeEEeccccccccceeEEehhhe-------------------EEe----ecCC-- Q lcl|Aclame:pro 132 IKEL---RILDWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREV-------------------IHD----RFNC-- 183 (454) Q Consensus 132 ~~~l---~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v-------------------ih~----~~~~-- 183 (454) ++.+ ++..|+.+++..-......+.--+ ............+-++ .|. .... T Consensus 185 V~dl~~s~yt~PsfIqpFE~g~~tvGF~~~~-~~~~~~ti~~l~p~qm~rmKmPrm~~i~q~~~v~~g~~~~~L~~d~~~ 263 (569) T protein:vir:10 185 ITSFECSYYTLPSFIKEFEVSGNLAGFSGDY-LKDASGKMVFADPWAIIPMKIPYWRPKSNLMPVHTGHKAYSLLDNPEE 263 (569) T ss_pred eEEEEecccccccccchhhhcCceEEeeccc-CCccccceeeechhhhhhhcccceeeccccchhhhhhhheeecccccc Confidence 3333 455677777654433222211100 0000000000111111 111 0111 Q ss_pred ---CcCcccccchhhhhHhHHHHHHHHHHHHHHHHhccCCcceeEecC-ccCCHHHH-----------HHHHHHHHHHhc Q lcl|Aclame:pro 184 ---FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIP-GSITEENA-----------KKLKSNWDSGYT 248 (454) Q Consensus 184 ---~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~l~~~-~~~s~e~~-----------~~~~~~~~~~~~ 248 (454) ..-..+|-|-|..+.+.......+....++.--+..+...+|.+. .+++++++ ++.++.+++... T Consensus 264 ~~Pi~psn~GgSFL~~ae~pf~~l~~Al~sL~~qri~dSv~~~~Itlnm~gM~p~qr~~y~r~lt~~LKr~~d~ie~a~~ 343 (569) T protein:vir:10 264 RTPIETQNYGTSLLEYAYEPYMNLRSAIRSLKATRFNASKIDRIIGLAMNSLDPVKAADYSRTITQTLKRAADLMERRAR 343 (569) T ss_pred cccccchhhhhHHHHHHHhHHHHHHHHHHhccchhhHHHHHhHHhhccccCCCHHHHhHHHHHHHHHHHHHHHHHHHHhc Confidence 111237888888877776666555544444444444444555554 33454443 334455555554 Q ss_pred Cccc-CC-----ceecCCCceee--eccccchhhHHHHHHHHHHHHHHHHhccchhhhcc--------cccccccC-HHH Q lcl|Aclame:pro 249 GENA-GK-----TAILSNGAKYN--PTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGV--------GQPPSSDN-VEA 311 (454) Q Consensus 249 g~n~-g~-----~~vl~~g~~~~--~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~lg~--------~~~~~~~n-~e~ 311 (454) |.++ -. +++.++|--.. .+..-+.+.--+|-.-+..+++|.++|+.+++||- .+.+-+-+ ++. T Consensus 344 gg~~~~~~~~H~LPv~gekq~~~tvDt~~~~A~~~gIEdvM~~~R~LagaLGlD~SMlGwAD~LsGGLGeGG~frtSaQa 423 (569) T protein:vir:10 344 GANNMPTVTNTLLPIMGDGKGQMTIDTQTIQADINGIEDILTYMRQLAAALGLDYTLLGWADQMSGGLGEGGFLRTAIQA 423 (569) T ss_pred cCccccccceeeeeeecCccccccccccccccCcccHHHHHHHHHHHHhhhccchhHhhHHHHhcccccccHHHHHHHHH Confidence 4322 11 12333332111 23333445556777788999999999999999983 22232222 222 Q ss_pred -HHHHHHHHHHHHHHHHHHHH-HHH---hhcCcccceeeecchhh----hhc---CHHHHHHHHHHHHhCCCcCHHHHHH Q lcl|Aclame:pro 312 -LEQQYYSQCLQTLIESIELL-LDE---ALETGENESTEFDVTTL----LRM---DSERRMKTLGDAVKNTLLTPNEARK 379 (454) Q Consensus 312 -~~~~~~~~~i~P~~~~ie~~-l~~---~l~~~~~~~~~f~~~~l----~~~---d~~~~~~~~~~~~~~g~~T~NE~R~ 379 (454) ++..+++..+.=++..+-+. +.. +.+++.++.+.++|.+. .++ ..+.+++.+..+++. ..-+|+ T Consensus 424 a~RS~~iRqa~~e~in~iidiH~~fKYgevf~~~drP~~V~F~s~~tAl~~E~~~n~~~raN~a~i~~Q~----la~l~e 499 (569) T protein:vir:10 424 AMRASWIQQGVEEFIQRAIDIHLAFKYGKVYPEGDRPYKIEFHSVNTALQQEHNDNRDSQANYATIVTQI----LDAVSN 499 (569) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCcccCCCCcceEEEeccchHHHHHHHHhHHHHHHHHHHHHHHH----HHHhhh Confidence 23334444444333333221 111 23455666666666542 111 223344444333331 222222 Q ss_pred --HhcCCCCCCccccccccccccccccccccccccCCCccCcccCCCCCCcccCcccccccccccHHHHHHHHHhcC Q lcl|Aclame:pro 380 --RENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAITETEHDAVKAMFRGILKK 454 (454) Q Consensus 380 --~~g~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~a~~~~~~~~ 454 (454) .+|++. .-..+++. ....++ .+..+.--++. + +.+.+++.--.+...+.-......+...||+ T Consensus 500 ~n~Lg~de--~~m~y~l~-d~~~~D----e~~~e~l~ae~-~----akp~DEe~~~~~~~~~~~~~~~~~~~~~~~~ 564 (569) T protein:vir:10 500 NSVLANSD--AFKRYLFS-DVLEID----EKISEALVNEL-K----AKSEDDDHLMDSIIKTPPQELAQILESVFKE 564 (569) T ss_pred cccccccH--HHHHHHHH-HHhhcc----hhHHHHHHhhc-C----CCcchhHHHHHHHhcCChHHHHHHHHHHhhc Confidence 122210 00000000 000000 00000000000 0 0000000000000111111122345566666 Done!