Query lcl|Aclame:protein:vir:5839|NCBI_annot:similar to portal vertex protein of head|genbank:acc:NP_835625;genbank:gi:30044028 Match_columns 533 No_of_seqs 91 out of 102 Neff 4.5 Searched_HMMs 1612 Date Sat Nov 30 15:22:19 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_38 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_38_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:5839 Length: 533 # 100.0 2E-260 1E-263 1444.3 45.0 533 1-533 1-533 (533) 2 protein:vir:101806 Length: 516 100.0 1E-215 9E-219 1198.4 39.4 466 1-471 3-516 (516) 3 protein:vir:101189 Length: 516 100.0 1E-215 9E-219 1198.4 39.4 466 1-471 3-516 (516) 4 protein:vir:106282 Length: 521 100.0 6E-215 4E-218 1195.0 39.1 467 1-472 5-521 (521) 5 protein:vir:6596 Length: 521 # 100.0 3E-214 2E-217 1191.4 39.5 467 1-472 5-521 (521) 6 protein:vir:100598 Length: 516 100.0 4E-214 3E-217 1190.4 40.1 465 1-471 3-516 (516) 7 protein:vir:108049 Length: 524 100.0 7E-214 5E-217 1189.1 37.2 466 1-472 7-524 (524) 8 protein:vir:81017 Length: 521 100.0 4E-213 2E-216 1185.3 39.3 467 1-472 5-521 (521) 9 protein:vir:98265 Length: 524 100.0 7E-213 5E-216 1183.6 39.5 466 1-472 9-524 (524) 10 protein:vir:6896 Length: 523 # 100.0 8E-213 5E-216 1183.5 38.9 467 1-472 5-523 (523) 11 protein:vir:5665 Length: 511 # 100.0 1E-211 7E-215 1177.1 37.5 455 4-469 1-511 (511) 12 protein:vir:103458 Length: 524 100.0 2E-211 1E-214 1175.8 37.8 467 1-472 6-524 (524) 13 protein:vir:7208 Length: 524 # 100.0 2E-211 1E-214 1175.7 37.8 467 1-472 6-524 (524) 14 protein:vir:104500 Length: 537 100.0 2E-210 1E-213 1170.9 40.1 479 19-533 1-535 (537) 15 protein:vir:103177 Length: 533 100.0 8E-210 5E-213 1167.0 39.9 470 20-533 1-528 (533) 16 protein:vir:104892 Length: 558 100.0 8E-210 5E-213 1166.9 38.6 493 1-533 1-557 (558) 17 protein:vir:106999 Length: 564 100.0 1E-209 7E-213 1166.1 37.8 488 20-533 1-559 (564) 18 protein:vir:5249 Length: 437 # 99.8 1.8E-19 1.1E-22 123.3 28.4 405 20-514 1-437 (437) 19 protein:vir:107742 Length: 537 99.8 2.8E-17 1.7E-20 111.3 36.5 453 3-526 1-537 (537) 20 protein:vir:96068 Length: 765 99.8 1.4E-17 8.5E-21 113.0 33.0 479 1-533 37-582 (765) 21 protein:vir:79772 Length: 648 99.7 7.4E-17 4.6E-20 109.0 33.8 456 1-533 10-515 (648) 22 protein:vir:94049 Length: 532 99.7 3.9E-17 2.4E-20 110.5 32.0 465 1-533 14-531 (532) 23 protein:vir:79647 Length: 435 99.7 2.2E-16 1.4E-19 106.4 32.8 401 23-525 1-435 (435) 24 protein:vir:104338 Length: 422 99.7 4.9E-17 3.1E-20 110.0 28.8 391 20-506 1-422 (422) 25 protein:vir:99563 Length: 862 99.7 9.2E-16 5.7E-19 103.0 33.6 464 1-533 54-592 (862) 26 protein:vir:7853 Length: 518 # 99.7 2.5E-15 1.6E-18 100.6 34.9 447 18-533 1-464 (518) 27 protein:vir:101648 Length: 518 99.7 2.5E-15 1.6E-18 100.6 34.9 447 18-533 1-464 (518) 28 protein:vir:80040 Length: 461 99.7 1.8E-16 1.1E-19 107.0 28.5 415 7-501 1-461 (461) 29 protein:vir:107662 Length: 427 99.7 1.9E-16 1.2E-19 106.8 26.4 392 1-496 1-427 (427) 30 protein:vir:79538 Length: 502 99.6 1.2E-14 7.2E-18 97.0 31.3 434 17-532 1-502 (502) 31 protein:vir:3843 Length: 397 # 99.6 1.2E-14 7.7E-18 96.8 31.0 390 1-531 1-397 (397) 32 protein:vir:102727 Length: 945 99.6 3.7E-14 2.3E-17 94.2 32.6 435 1-533 40-536 (945) 33 protein:vir:95542 Length: 548 99.6 1.6E-14 9.8E-18 96.3 29.9 467 17-532 1-548 (548) 34 protein:vir:100150 Length: 437 99.6 7.2E-14 4.5E-17 92.6 32.1 422 8-525 1-437 (437) 35 protein:vir:80644 Length: 551 99.6 4.9E-14 3.1E-17 93.5 30.5 470 1-533 5-549 (551) 36 protein:vir:96579 Length: 576 99.6 3.7E-13 2.3E-16 88.7 34.6 485 1-533 21-573 (576) 37 protein:vir:63755 Length: 547 99.6 4.8E-14 3E-17 93.6 29.6 476 1-533 1-545 (547) 38 protein:vir:102080 Length: 429 99.6 3.9E-13 2.4E-16 88.6 34.6 411 17-524 1-429 (429) 39 protein:vir:80796 Length: 574 99.5 2E-13 1.2E-16 90.2 31.7 452 1-533 1-534 (574) 40 protein:vir:95599 Length: 563 99.5 5.9E-13 3.7E-16 87.6 33.8 475 1-533 23-559 (563) 41 protein:vir:99312 Length: 563 99.5 5.9E-13 3.7E-16 87.6 33.8 475 1-533 23-559 (563) 42 protein:vir:3989 Length: 392 # 99.5 4.5E-14 2.8E-17 93.8 27.5 382 1-504 3-392 (392) 43 protein:vir:1023 Length: 392 # 99.5 4.5E-14 2.8E-17 93.8 27.5 382 1-504 3-392 (392) 44 protein:vir:78641 Length: 278 99.5 9.3E-15 5.8E-18 97.5 23.7 266 87-406 1-278 (278) 45 protein:vir:107605 Length: 432 99.5 8.2E-13 5.1E-16 86.8 33.6 415 4-522 1-432 (432) 46 protein:vir:102855 Length: 432 99.5 8.2E-13 5.1E-16 86.8 33.6 415 4-522 1-432 (432) 47 protein:vir:105002 Length: 432 99.5 8.2E-13 5.1E-16 86.8 33.6 415 4-522 1-432 (432) 48 protein:vir:3153 Length: 467 # 99.5 2.2E-13 1.4E-16 90.0 30.2 406 70-533 1-461 (467) 49 protein:vir:1326 Length: 457 # 99.5 9.8E-13 6.1E-16 86.4 33.0 441 4-533 1-456 (457) 50 protein:vir:4828 Length: 382 # 99.5 5.3E-13 3.3E-16 87.9 31.3 379 1-511 1-382 (382) 51 protein:vir:81095 Length: 416 99.5 1.9E-12 1.2E-15 84.9 33.8 404 1-509 1-416 (416) 52 protein:vir:4598 Length: 416 # 99.5 1.9E-12 1.2E-15 84.9 33.8 404 1-509 1-416 (416) 53 protein:vir:93610 Length: 454 99.5 1.3E-12 7.8E-16 85.8 32.6 424 1-533 1-440 (454) 54 protein:vir:7407 Length: 392 # 99.5 3.3E-13 2.1E-16 89.0 29.3 383 1-517 3-392 (392) 55 protein:vir:96980 Length: 409 99.5 1.6E-12 9.8E-16 85.3 31.9 395 20-521 1-409 (409) 56 protein:vir:4337 Length: 434 # 99.5 1.3E-13 8.3E-17 91.2 26.0 407 20-502 1-434 (434) 57 protein:vir:5737 Length: 419 # 99.5 8.7E-13 5.4E-16 86.7 30.0 404 1-524 1-419 (419) 58 protein:vir:1266 Length: 416 # 99.5 6.3E-13 3.9E-16 87.5 28.7 399 18-505 1-416 (416) 59 protein:vir:10321 Length: 495 99.5 1.3E-12 7.9E-16 85.8 30.2 428 20-512 1-495 (495) 60 protein:vir:94426 Length: 409 99.5 5.3E-12 3.3E-15 82.4 33.2 392 20-521 1-409 (409) 61 protein:vir:105782 Length: 449 99.5 4.2E-13 2.6E-16 88.4 27.1 398 20-513 1-449 (449) 62 protein:vir:4156 Length: 542 # 99.5 9.2E-12 5.7E-15 81.1 34.3 443 19-533 1-472 (542) 63 protein:vir:6240 Length: 457 # 99.5 5.2E-12 3.3E-15 82.4 33.0 434 4-526 1-457 (457) 64 protein:vir:8418 Length: 409 # 99.5 7.2E-12 4.4E-15 81.7 33.5 396 1-525 1-409 (409) 65 protein:vir:105064 Length: 421 99.4 5.3E-12 3.3E-15 82.4 31.7 402 23-524 1-421 (421) 66 protein:vir:483 Length: 413 # 99.4 5.8E-12 3.6E-15 82.2 31.7 399 18-522 1-413 (413) 67 protein:vir:102118 Length: 409 99.4 5E-12 3.1E-15 82.5 31.2 392 23-525 1-409 (409) 68 protein:vir:79984 Length: 441 99.4 9.6E-12 6E-15 81.0 32.4 423 1-526 5-441 (441) 69 protein:vir:9408 Length: 441 # 99.4 9.6E-12 6E-15 81.0 32.4 423 1-526 5-441 (441) 70 protein:vir:100249 Length: 431 99.4 4.6E-12 2.9E-15 82.7 30.6 405 1-503 1-431 (431) 71 protein:vir:81072 Length: 432 99.4 1.2E-11 7.5E-15 80.5 32.5 411 1-515 1-432 (432) 72 protein:vir:960 Length: 413 # 99.4 3.5E-12 2.2E-15 83.4 29.5 402 1-507 1-413 (413) 73 protein:vir:10362 Length: 432 99.4 1.1E-11 6.6E-15 80.7 32.1 413 1-517 1-432 (432) 74 protein:vir:9702 Length: 406 # 99.4 1.8E-11 1.1E-14 79.6 33.3 395 4-514 1-406 (406) 75 protein:vir:93943 Length: 409 99.4 1.5E-11 9E-15 80.0 32.7 391 20-521 1-409 (409) 76 protein:vir:1884 Length: 424 # 99.4 4.3E-12 2.7E-15 82.9 29.2 404 1-512 1-424 (424) 77 protein:vir:97060 Length: 432 99.4 2.4E-11 1.5E-14 78.8 32.8 403 1-520 1-432 (432) 78 protein:vir:94666 Length: 723 99.4 8E-12 5E-15 81.4 29.8 423 35-533 1-445 (723) 79 protein:vir:2683 Length: 412 # 99.4 3.3E-11 2E-14 78.1 32.8 403 4-521 1-412 (412) 80 protein:vir:80333 Length: 419 99.4 1E-11 6.3E-15 80.9 29.9 406 23-528 1-419 (419) 81 protein:vir:96738 Length: 505 99.4 1.3E-11 8.3E-15 80.2 30.5 432 8-501 1-505 (505) 82 protein:vir:101647 Length: 460 99.4 1E-11 6.3E-15 80.8 29.6 417 20-506 1-460 (460) 83 protein:vir:189 Length: 424 # 99.4 2.4E-11 1.5E-14 78.8 31.5 402 1-523 3-424 (424) 84 protein:vir:4454 Length: 414 # 99.4 4.7E-11 2.9E-14 77.2 33.6 398 4-520 1-414 (414) 85 protein:vir:8100 Length: 466 # 99.4 2.4E-11 1.5E-14 78.8 31.0 429 13-522 1-466 (466) 86 protein:vir:98396 Length: 441 99.4 6E-11 3.7E-14 76.6 32.6 423 1-526 5-441 (441) 87 protein:vir:4194 Length: 540 # 99.4 6.7E-11 4.2E-14 76.4 34.4 444 23-533 1-482 (540) 88 protein:vir:95378 Length: 406 99.4 2.1E-11 1.3E-14 79.1 29.6 395 4-525 1-406 (406) 89 protein:vir:4952 Length: 386 # 99.3 8.9E-12 5.5E-15 81.2 27.5 380 1-502 1-386 (386) 90 protein:vir:4854 Length: 386 # 99.3 3.5E-11 2.2E-14 77.9 29.2 382 1-502 1-386 (386) 91 protein:vir:4995 Length: 384 # 99.3 3E-11 1.9E-14 78.3 28.3 366 4-471 1-384 (384) 92 protein:vir:1380 Length: 422 # 99.3 8.7E-11 5.4E-14 75.7 30.7 403 4-506 1-422 (422) 93 protein:vir:389 Length: 530 # 99.3 1.2E-10 7.7E-14 74.9 31.3 439 21-523 1-530 (530) 94 protein:vir:6382 Length: 553 # 99.3 1.2E-10 7.4E-14 75.0 29.8 442 19-506 1-553 (553) 95 protein:vir:100882 Length: 383 99.3 1.2E-10 7.4E-14 75.0 29.7 373 20-525 1-383 (383) 96 protein:vir:81152 Length: 411 99.3 9.5E-11 5.9E-14 75.5 29.1 393 4-508 1-411 (411) 97 protein:vir:101418 Length: 569 99.3 8.2E-11 5.1E-14 75.9 28.2 469 1-500 8-569 (569) 98 protein:vir:9359 Length: 348 # 99.2 1.9E-10 1.2E-13 73.9 28.5 335 96-521 1-348 (348) 99 protein:vir:8317 Length: 409 # 99.2 1.5E-10 9.3E-14 74.4 27.8 380 4-482 1-409 (409) 100 protein:vir:3420 Length: 533 # 99.2 1.3E-10 8.2E-14 74.8 27.1 447 1-522 3-533 (533) 101 protein:vir:100691 Length: 535 99.2 5.1E-10 3.1E-13 71.5 35.8 450 1-533 1-525 (535) 102 protein:vir:3868 Length: 417 # 99.2 5.6E-10 3.5E-13 71.3 31.8 405 4-526 1-417 (417) 103 protein:vir:100187 Length: 385 99.2 9.2E-10 5.7E-13 70.1 28.8 376 20-510 1-385 (385) 104 protein:vir:80134 Length: 403 99.1 1.2E-09 7.2E-13 69.6 28.3 392 1-526 1-403 (403) 105 protein:vir:1431 Length: 419 # 99.1 2.1E-09 1.3E-12 68.1 33.1 405 23-528 1-419 (419) 106 protein:vir:81218 Length: 423 99.0 4.4E-09 2.7E-12 66.4 32.7 406 4-493 1-423 (423) 107 protein:vir:1082 Length: 359 # 99.0 3.1E-09 1.9E-12 67.2 25.9 350 4-462 1-359 (359) 108 protein:vir:4509 Length: 424 # 99.0 6.7E-09 4.2E-12 65.4 33.3 409 1-500 1-424 (424) 109 protein:vir:106716 Length: 698 98.9 1.5E-08 9E-12 63.5 27.6 459 1-533 42-576 (698) 110 protein:vir:108215 Length: 469 98.9 2E-08 1.2E-11 62.8 35.5 423 23-512 1-469 (469) 111 protein:vir:99452 Length: 651 98.8 5.2E-08 3.2E-11 60.5 28.2 442 26-533 1-553 (651) 112 protein:vir:7768 Length: 484 # 98.8 6.4E-08 4E-11 60.0 28.3 433 1-521 1-484 (484) 113 protein:vir:4698 Length: 251 # 98.7 2.3E-08 1.4E-11 62.5 21.9 241 1-301 1-251 (251) 114 protein:vir:78589 Length: 695 98.6 2.1E-07 1.3E-10 57.2 26.5 461 1-533 42-576 (695) 115 protein:vir:2341 Length: 488 # 98.5 3.1E-07 1.9E-10 56.3 25.6 435 1-513 1-488 (488) 116 protein:vir:104082 Length: 485 98.5 4E-07 2.5E-10 55.7 28.2 426 1-512 5-485 (485) 117 protein:vir:3648 Length: 695 # 98.5 4.7E-07 2.9E-10 55.3 29.0 458 1-533 42-567 (695) 118 protein:vir:1150 Length: 350 # 98.5 5E-07 3.1E-10 55.1 25.7 333 1-406 11-350 (350) 119 protein:vir:3780 Length: 345 # 98.4 6.4E-07 4E-10 54.5 24.8 337 4-409 1-345 (345) 120 protein:vir:101541 Length: 694 98.4 6.4E-07 4E-10 54.5 28.9 465 1-533 41-566 (694) 121 protein:vir:4223 Length: 486 # 98.4 7.5E-07 4.6E-10 54.2 30.4 431 1-524 1-486 (486) 122 protein:vir:104259 Length: 403 98.4 7.6E-07 4.7E-10 54.1 26.0 383 20-526 1-403 (403) 123 protein:vir:9507 Length: 395 # 98.4 8.5E-07 5.3E-10 53.9 23.8 376 17-506 1-395 (395) 124 protein:vir:101289 Length: 395 98.4 8.5E-07 5.3E-10 53.9 23.8 376 17-506 1-395 (395) 125 protein:vir:100650 Length: 395 98.4 8.5E-07 5.3E-10 53.9 23.8 376 17-506 1-395 (395) 126 protein:vir:99916 Length: 504 98.4 9.9E-07 6.1E-10 53.5 30.7 420 37-533 1-503 (504) 127 protein:vir:2427 Length: 485 # 98.3 1.2E-06 7.7E-10 53.0 29.7 432 1-512 1-485 (485) 128 protein:vir:78537 Length: 480 98.3 1.7E-06 1.1E-09 52.2 25.4 427 26-523 1-480 (480) 129 protein:vir:267 Length: 348 # 98.2 2.3E-06 1.4E-09 51.5 23.8 324 37-416 1-348 (348) 130 protein:vir:78227 Length: 480 98.2 2.5E-06 1.6E-09 51.3 30.3 425 8-516 1-480 (480) 131 protein:vir:1587 Length: 508 # 98.2 3.5E-06 2.2E-09 50.5 31.7 401 20-479 1-508 (508) 132 protein:vir:78749 Length: 337 98.1 3.8E-06 2.3E-09 50.3 24.4 323 4-407 1-337 (337) 133 protein:vir:2013 Length: 344 # 98.1 4.3E-06 2.7E-09 50.0 24.2 329 4-406 1-344 (344) 134 protein:vir:3743 Length: 345 # 98.1 4.5E-06 2.8E-09 49.9 25.4 332 4-417 1-345 (345) 135 protein:vir:97171 Length: 512 98.0 6E-06 3.7E-09 49.2 27.4 423 1-526 31-512 (512) 136 protein:vir:95965 Length: 385 98.0 6.2E-06 3.9E-09 49.1 26.3 366 20-512 1-385 (385) 137 protein:vir:6058 Length: 344 # 98.0 6.7E-06 4.2E-09 49.0 26.4 330 4-406 1-344 (344) 138 protein:vir:100328 Length: 346 98.0 6.9E-06 4.3E-09 48.9 25.3 337 4-414 1-346 (346) 139 protein:vir:105292 Length: 478 98.0 7.6E-06 4.7E-09 48.6 31.0 402 20-502 1-478 (478) 140 protein:vir:80959 Length: 499 98.0 7.9E-06 4.9E-09 48.6 32.9 405 15-502 1-499 (499) 141 protein:vir:80680 Length: 441 97.9 9.8E-06 6.1E-09 48.1 27.3 396 8-486 1-441 (441) 142 protein:vir:38 Length: 496 # N 97.9 1E-05 6.3E-09 48.0 32.8 393 42-492 1-496 (496) 143 protein:vir:103219 Length: 201 97.9 4.3E-07 2.7E-10 55.5 10.7 195 250-490 1-201 (201) 144 protein:vir:79511 Length: 448 97.9 1.3E-05 8E-09 47.4 31.4 413 26-518 1-448 (448) 145 protein:vir:99781 Length: 511 97.9 1.3E-05 8.2E-09 47.3 28.2 422 7-502 1-511 (511) 146 protein:vir:96366 Length: 511 97.9 1.4E-05 8.4E-09 47.3 29.8 428 7-526 1-511 (511) 147 protein:vir:78805 Length: 511 97.9 1.4E-05 8.4E-09 47.3 29.8 428 7-526 1-511 (511) 148 protein:vir:95806 Length: 440 97.9 1.4E-05 8.7E-09 47.2 30.0 386 19-492 1-440 (440) 149 protein:vir:105461 Length: 470 97.8 1.5E-05 9.5E-09 47.0 31.1 374 38-502 1-470 (470) 150 protein:vir:1661 Length: 378 # 97.8 1.7E-05 1E-08 46.7 25.6 359 17-510 1-378 (378) 151 protein:vir:78310 Length: 376 97.8 1.8E-05 1.1E-08 46.6 26.3 359 20-504 1-376 (376) 152 protein:vir:98444 Length: 434 97.8 2E-05 1.2E-08 46.3 28.8 379 58-499 1-434 (434) 153 protein:vir:79703 Length: 505 97.8 2.1E-05 1.3E-08 46.2 31.4 408 20-470 1-505 (505) 154 protein:vir:1986 Length: 512 # 97.7 2.4E-05 1.5E-08 45.9 31.8 429 20-533 1-473 (512) 155 protein:vir:107112 Length: 478 97.7 3.2E-05 2E-08 45.2 31.9 399 20-498 1-478 (478) 156 protein:vir:77981 Length: 448 97.6 3.6E-05 2.2E-08 45.0 27.7 409 26-520 1-448 (448) 157 protein:vir:6210 Length: 394 # 97.6 3.6E-05 2.2E-08 45.0 30.3 381 13-510 1-394 (394) 158 protein:vir:79063 Length: 491 97.6 3.6E-05 2.2E-08 44.9 34.7 407 1-533 7-433 (491) 159 protein:vir:96240 Length: 511 97.6 3.7E-05 2.3E-08 44.9 29.6 426 7-519 1-511 (511) 160 protein:vir:103951 Length: 511 97.6 3.7E-05 2.3E-08 44.9 28.9 431 7-519 1-511 (511) 161 protein:vir:79207 Length: 351 97.6 3.8E-05 2.4E-08 44.8 26.6 329 4-422 1-351 (351) 162 protein:vir:9568 Length: 410 # 97.6 4E-05 2.5E-08 44.7 30.3 362 40-461 1-410 (410) 163 protein:vir:98816 Length: 446 97.6 4E-05 2.5E-08 44.7 28.8 387 20-471 1-446 (446) 164 protein:vir:93747 Length: 472 97.5 4.8E-05 3E-08 44.3 32.2 384 27-517 1-472 (472) 165 protein:vir:107880 Length: 491 97.5 5E-05 3.1E-08 44.2 35.2 410 19-533 1-456 (491) 166 protein:vir:4089 Length: 395 # 97.5 5E-05 3.1E-08 44.2 25.4 379 17-523 1-395 (395) 167 protein:vir:99232 Length: 526 97.4 7.2E-05 4.5E-08 43.3 30.0 425 1-533 1-447 (526) 168 protein:vir:99072 Length: 479 97.4 7.3E-05 4.5E-08 43.3 29.3 428 1-522 4-479 (479) 169 protein:vir:93867 Length: 378 97.4 7.3E-05 4.6E-08 43.2 25.2 356 17-510 1-378 (378) 170 protein:vir:1236 Length: 483 # 97.4 8.3E-05 5.2E-08 42.9 33.1 395 20-518 1-483 (483) 171 protein:vir:96179 Length: 468 97.4 8.6E-05 5.4E-08 42.9 30.3 392 20-484 1-468 (468) 172 protein:vir:103971 Length: 376 97.3 9E-05 5.6E-08 42.8 27.4 340 1-422 1-376 (376) 173 protein:vir:7987 Length: 456 # 97.3 9.3E-05 5.7E-08 42.7 26.0 390 1-494 2-456 (456) 174 protein:vir:78161 Length: 355 97.3 9.3E-05 5.8E-08 42.7 25.3 328 142-533 1-354 (355) 175 protein:vir:96494 Length: 501 97.2 0.00013 8.3E-08 41.8 29.7 416 1-517 30-501 (501) 176 protein:vir:79233 Length: 526 97.2 0.00015 9.1E-08 41.6 30.1 423 1-533 1-447 (526) 177 protein:vir:78191 Length: 351 97.1 0.00015 9.4E-08 41.5 27.9 328 4-422 1-351 (351) 178 protein:vir:105889 Length: 474 97.1 0.00015 9.5E-08 41.5 32.1 402 17-494 1-474 (474) 179 protein:vir:94101 Length: 474 97.1 0.00015 9.5E-08 41.5 32.1 402 17-494 1-474 (474) 180 protein:vir:106639 Length: 481 97.1 0.00017 1E-07 41.3 32.5 409 12-504 1-481 (481) 181 protein:vir:99853 Length: 488 97.1 0.00017 1E-07 41.3 30.6 407 19-533 1-443 (488) 182 protein:vir:5691 Length: 344 # 97.1 0.00017 1.1E-07 41.2 26.4 333 4-406 1-344 (344) 183 protein:vir:94002 Length: 378 97.1 0.00018 1.1E-07 41.1 24.0 355 17-510 1-378 (378) 184 protein:vir:9306 Length: 511 # 97.1 0.00018 1.1E-07 41.1 30.6 430 7-516 1-511 (511) 185 protein:vir:94805 Length: 492 97.0 0.0002 1.2E-07 40.9 29.8 403 13-506 1-492 (492) 186 protein:vir:95899 Length: 474 97.0 0.0002 1.2E-07 40.9 29.4 399 20-517 1-474 (474) 187 protein:vir:96266 Length: 474 97.0 0.0002 1.2E-07 40.9 29.4 399 20-517 1-474 (474) 188 protein:vir:103860 Length: 528 97.0 0.00022 1.4E-07 40.6 29.4 444 1-533 1-487 (528) 189 protein:vir:9641 Length: 395 # 97.0 0.00023 1.4E-07 40.5 22.4 370 20-497 1-395 (395) 190 protein:vir:98567 Length: 340 96.9 0.00024 1.5E-07 40.4 24.9 328 4-414 1-340 (340) 191 protein:vir:99522 Length: 470 96.9 0.00026 1.6E-07 40.2 31.6 402 1-508 19-470 (470) 192 protein:vir:9751 Length: 422 # 96.9 0.00028 1.7E-07 40.1 30.1 375 23-457 1-422 (422) 193 protein:vir:95113 Length: 474 96.9 0.00029 1.8E-07 39.9 29.5 414 1-517 7-474 (474) 194 protein:vir:78907 Length: 518 96.8 0.00031 1.9E-07 39.8 27.6 416 4-505 1-518 (518) 195 protein:vir:95254 Length: 488 96.8 0.00032 2E-07 39.8 31.2 434 20-528 1-488 (488) 196 protein:vir:9871 Length: 429 # 96.8 0.00033 2.1E-07 39.7 30.2 385 26-496 1-429 (429) 197 protein:vir:102950 Length: 471 96.7 0.00037 2.3E-07 39.4 33.1 370 42-472 1-471 (471) 198 protein:vir:3964 Length: 453 # 96.7 0.0004 2.5E-07 39.2 31.9 404 1-492 11-453 (453) 199 protein:vir:98883 Length: 517 96.6 0.00048 3E-07 38.8 27.1 411 4-502 1-517 (517) 200 protein:vir:5961 Length: 503 # 96.6 0.00048 3E-07 38.8 32.7 406 20-514 1-503 (503) 201 protein:vir:94869 Length: 378 96.5 0.00056 3.5E-07 38.4 25.8 356 21-510 1-378 (378) 202 protein:vir:78083 Length: 537 96.5 0.00059 3.7E-07 38.3 34.5 422 37-529 1-537 (537) 203 protein:vir:98643 Length: 395 96.5 0.00059 3.7E-07 38.3 26.1 379 20-520 1-395 (395) 204 protein:vir:4898 Length: 502 # 96.4 0.00064 4E-07 38.1 31.2 420 1-531 31-502 (502) 205 protein:vir:97336 Length: 492 96.3 0.00072 4.5E-07 37.8 29.5 403 13-501 1-492 (492) 206 protein:vir:2500 Length: 501 # 96.3 0.00072 4.5E-07 37.8 31.3 413 26-523 1-501 (501) 207 protein:vir:102330 Length: 451 96.2 0.00085 5.3E-07 37.4 29.0 387 26-482 1-451 (451) 208 protein:vir:3028 Length: 500 # 96.2 0.00092 5.7E-07 37.2 34.0 416 4-479 1-500 (500) 209 protein:vir:9815 Length: 500 # 96.2 0.00092 5.7E-07 37.2 34.0 416 4-479 1-500 (500) 210 protein:vir:105819 Length: 456 96.1 0.00095 5.9E-07 37.2 28.9 392 1-494 1-456 (456) 211 protein:vir:102602 Length: 456 96.1 0.00095 5.9E-07 37.2 28.9 392 1-494 1-456 (456) 212 protein:vir:94742 Length: 409 95.9 0.0013 8.3E-07 36.4 28.0 360 15-446 1-409 (409) 213 protein:vir:79043 Length: 479 95.8 0.0015 9.1E-07 36.1 28.8 400 1-493 7-479 (479) 214 protein:vir:94498 Length: 474 95.7 0.0015 9.5E-07 36.0 30.3 415 1-524 7-474 (474) 215 protein:vir:97447 Length: 474 95.7 0.0015 9.5E-07 36.0 30.3 415 1-524 7-474 (474) 216 protein:vir:3609 Length: 452 # 95.7 0.0016 1E-06 35.9 31.5 391 24-502 1-452 (452) 217 protein:vir:2732 Length: 501 # 95.7 0.0016 1E-06 35.9 31.9 417 1-514 15-501 (501) 218 protein:vir:106571 Length: 499 95.4 0.0021 1.3E-06 35.2 31.5 432 8-527 1-499 (499) 219 protein:vir:94546 Length: 506 95.1 0.0027 1.7E-06 34.7 29.0 418 1-510 16-506 (506) 220 protein:vir:858 Length: 378 # 94.9 0.0032 2E-06 34.2 26.7 357 17-525 1-378 (378) 221 protein:vir:4782 Length: 522 # 94.8 0.0035 2.2E-06 34.1 33.7 429 4-511 1-522 (522) 222 protein:vir:1634 Length: 409 # 94.7 0.0036 2.3E-06 34.0 28.2 363 11-446 1-409 (409) 223 protein:vir:98853 Length: 219 94.7 0.0037 2.3E-06 33.9 17.8 210 167-412 1-219 (219) 224 protein:vir:96839 Length: 474 94.6 0.004 2.5E-06 33.7 31.6 387 20-494 1-474 (474) 225 protein:vir:9922 Length: 489 # 94.3 0.0048 3E-06 33.3 30.9 425 18-503 1-489 (489) 226 protein:vir:8184 Length: 474 # 94.3 0.0049 3E-06 33.3 32.0 405 1-488 2-474 (474) 227 protein:vir:733 Length: 453 # 94.0 0.0056 3.5E-06 32.9 27.6 402 1-480 11-453 (453) 228 protein:vir:79150 Length: 368 93.8 0.0063 3.9E-06 32.6 26.0 337 26-421 1-368 (368) 229 protein:vir:10447 Length: 536 27.4 1.8 0.0011 19.1 27.2 399 51-501 1-536 (536) 230 protein:vir:2198 Length: 536 # 23.6 2.3 0.0014 18.6 27.5 399 51-501 1-536 (536) 231 protein:vir:94572 Length: 535 21.5 2.6 0.0016 18.3 25.1 394 51-500 1-535 (535) No 1 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=100.00 E-value=2e-260 Score=1444.33 Aligned_cols=533 Identities=100% Similarity=1.539 Sum_probs=527.1 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) |||||||+|+||++++++||++++||++|++++|+++||+|+++++++++.+++||||+++|+++||++||+|+.+|||| T Consensus 1 ~~~~~~w~~~de~~~~~~~~~~~~~~~~p~~~dG~s~i~~~~~~~~~~~~~~~~~~gg~~~n~~eLI~~YR~ma~~~pEV 80 (533) T protein:vir:58 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) T ss_pred CCCcchhhhhhHHHHHHHhhchhhcccCccCCCCCccccCCCCcchhhhhhhhhhhccccccHHHHHHHHHHhhccCcch Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998789999 Q ss_pred HHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEc Q lcl|Aclame:pro 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVV 160 (533) Q Consensus 81 ~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~l 160 (533) ++||++|||||||++.++.||+|+|+++++|++||++|+++|+|++++|++||+||||||+||||+++++++||++||+| T Consensus 81 d~AideIvneaiv~d~~~~pV~v~l~~~e~s~~iK~kI~~lldf~~~~~~~fR~WYVDGriy~Hkiik~~k~GI~elr~l 160 (533) T protein:vir:58 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVV 160 (533) T ss_pred hhHHHhhhceeeEecCCCceeEeecccccccHHHHHHHHHHhcchhhhhHHHHhhhhcceeEEEeccCCcccchhhheec Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 SPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLY 240 (533) Q Consensus 161 dP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIy 240 (533) ||++|++|+++.|+.|||+|++.+.+++++++++++++++|+|++|++.+.|+++|+||||+|||+|||||||||||||| T Consensus 161 DPr~i~~vr~~~t~~eyyvy~~~~~~~~s~~~~~kI~~daI~y~~SGl~d~~~~~iisyLhkAiKp~NQLkmiEDAlVIY 240 (533) T protein:vir:58 161 SPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLY 240 (533) T ss_pred CCeeeEEEEeeccceEEEeecccccccccCccccccchhheeeeeeccccCCCCceehhhhHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999888888888888889999999999999999999999999999 Q ss_pred HHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecC Q lcl|Aclame:pro 241 RVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQ 320 (533) Q Consensus 241 Ri~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLp 320 (533) |+||||+|||||||||||||.||+|||++||++||||+|||++||+|+|++|++|++|||||||||||+|||||||+||| T Consensus 241 RisRAPeRRvFYIDVGNlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGgrgTEI~TLp 320 (533) T protein:vir:58 241 RVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQ 320 (533) T ss_pred hhcCChhheEEEEeecCCCccCHHHHHHHHHHhcccceEEeccCCeEeeccchhhhhhhHhhhcccccCCCccceeeecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCccceeEE Q lcl|Aclame:pro 321 GSKVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMVRMNKEFADQDFRLV 400 (533) Q Consensus 321 G~nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qLilk~i~t~eew~~~ 400 (533) |||||+|+||+||++|||+|||||+|||+.+++|||+++|||||+||+|||+|||++|+++|++|||||||||++||+|+ T Consensus 321 Gg~lgemeDV~YF~kkLy~ALnVP~sRl~~e~~fgr~~eItRDEiKF~KFI~rLR~rF~~ll~~qLilk~iit~eew~~~ 400 (533) T protein:vir:58 321 GSKVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMVRMNKEFADQDFRLV 400 (533) T ss_pred CCCCCcHHHHHHHHHHHHHHhCCCeeecCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhheeee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCcc Q lcl|Aclame:pro 401 MNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGER 480 (533) Q Consensus 401 f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~ 480 (533) |++||||+|+|++|||++|+++|++++|||||+|||||||+|||||++|+++|++|+++++|++++++++++|++++|++ T Consensus 401 f~~Dn~f~ElKe~Eil~~Ri~~l~~~dpyvgk~yi~k~ILr~tdei~~q~e~ie~E~~~~~~~~~~~~~e~~~~~~~~~~ 480 (533) T protein:vir:58 401 MNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGER 480 (533) T ss_pred eeccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCChhhhHHHHHHHHhhcCCCCCCCCcccccCCcccCccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 481 GSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) ++|+++|++++++++|++|++++||+||++||++++++++|||++|||||||| T Consensus 481 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~~~~~~p~~~ 533 (533) T protein:vir:58 481 GSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) T ss_pred cCcccCCCChhhHhcccCCcccccccccccccchhhhhhcCCcccCCCCCCCC Confidence 99999999999999999999999999999999999999999999999999999 No 2 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=100.00 E-value=1.5e-215 Score=1198.35 Aligned_cols=466 Identities=17% Similarity=0.267 Sum_probs=429.3 Q ss_pred CCC-cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccC-ccccchHHHHHHHHHHhhcCh Q lcl|Aclame:pro 1 MPS-LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYG-GIEFNRFFLYDMYDRMDYTDP 78 (533) Q Consensus 1 ~~~-~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~yg-g~~~n~~~li~~YR~m~~~~P 78 (533) |+. |+||+|+||.+++++++++..|+++|+++|||++|+.+++++.+++++++.++. +.++|+++||++||+|+ +|| T Consensus 3 ~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma-~~p 81 (516) T protein:vir:10 3 FLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLI-NNP 81 (516) T ss_pred chHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHh-hcc Confidence 787 999999999999999999999999999999999999999999888887665554 56789999999999997 699 Q ss_pred hHHHHHHHhhceeeecCCCCceeeeecccccccHHH-------HHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCC Q lcl|Aclame:pro 79 LISTVLDIIADECTIPNENGNIVDVVTKDIELAKAI-------LSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSD 151 (533) Q Consensus 79 EV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si-------~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k 151 (533) |||+||++|||||||||.+++||+|+|+++++|++| |++++++|+|++++|++||+||||||+|||||+|+++ T Consensus 82 Evd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~~k 161 (516) T protein:vir:10 82 EVERAVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKLDTLFRRWYVDSRIFFHKIMPNPK 161 (516) T ss_pred chhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEecCcc Confidence 999999999999999999999999999999999997 4456779999999999999999999999999999999 Q ss_pred CCeeeeEEcCcceeeEEeeccCc-----------EEEEEeccccee---cc---cCCcccccCcccEEEEecCcccC-cc Q lcl|Aclame:pro 152 GTIEKFQVVSPYIFSKRYNPETD-----------TWYYVITDVYRN---VV---SGYFNEDIPEEDVIHFSHKIDTN-FF 213 (533) Q Consensus 152 ~gI~elr~ldP~~ik~v~d~~g~-----------~e~y~y~~~~~~---~~---~~~~~~~~~~~dvi~~~~~~~~d-~~ 213 (533) +||+|||+|||++|++||.+.+. ++||+|+++... ++ +++++.++ +.++|+|+|+++.| |+ T Consensus 162 ~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI-~~dAI~y~hSGL~d~~~ 240 (516) T protein:vir:10 162 KGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKI-PRSAVVYASSGLMDCSD 240 (516) T ss_pred ccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceee-chhheeeecccceeCCC Confidence 99999999999999999977543 389999875432 22 22333444 46999999988877 56 Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeeccccc Q lcl|Aclame:pro 214 PYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNY 293 (533) Q Consensus 214 ~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~ 293 (533) ++++||||+|+|||||||||||||||||+||||+|||||||||||||.||+|||++||++||||+|||++||+|++++++ T Consensus 241 ~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~ 320 (516) T protein:vir:10 241 RGIIGYLHNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTVKNQKRN 320 (516) T ss_pred CceeeeehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhh Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999985 Q ss_pred chhhhHHhhhhcccccCCCcceeeecCCC-CCChHHHHHHHHHHHHHhcCCCeeeccCCCCc----cchhhhhHHHHHHH Q lcl|Aclame:pro 294 FSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAEDVEYMLNRLISALKVPKAFIGYEGDV----NAKNTLATQDIKFN 368 (533) Q Consensus 294 ~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~----gr~~eI~rde~kF~ 368 (533) ||||||||||||+|||||||+||||| |||+|+||+||++|||+|||||+|||+++++| ||++||||||+||+ T Consensus 321 ---msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~ 397 (516) T protein:vir:10 321 ---LSMTEDYWLMRRDGKSVTEVSSLPGAQTMGDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFR 397 (516) T ss_pred ---hhhHhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHH Confidence 99999999999999999999999998 89999999999999999999999999998873 89999999999999 Q ss_pred HHHHHHHHHHH----HHHhhhhhhccCCCccce-------eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhH----H Q lcl|Aclame:pro 369 NTIKRIQGFFV----EELERMVRMNKEFADQDF-------RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRE----D 433 (533) Q Consensus 369 kfI~rLr~~F~----~~l~~qLilk~i~t~eew-------~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk----~ 433 (533) |||+|||++|+ ++|++|||||||||++|| +|+|++||||+|+|++|||++|+++|++++||||| + T Consensus 398 KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~ 477 (516) T protein:vir:10 398 KFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKYVSHD 477 (516) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchH Confidence 99999999987 679999999999999999 59999999999999999999999999999999998 5 Q ss_pred HHHHHHhcCChhhh-HHHHHHhhhcccCCCCCccccccc Q lcl|Aclame:pro 434 WIYSNILQIPYDLK-PQEEVAEAAGGGGLFDTGGFGEET 471 (533) Q Consensus 434 ~i~k~il~~tde~~-~q~~~i~~E~~~~~~~~~~~~~~~ 471 (533) ||||+||+||||++ +++++|++|.++++++.|+.++.- T Consensus 478 yi~k~ILr~tDeei~~e~k~I~~E~~~~~~~~p~~~~~f 516 (516) T protein:vir:10 478 YVMKNILQMTEEQIAQEEKQIEQEAGIKRFQNPENEDDF 516 (516) T ss_pred HHHHHHhcCCHhhHHHHHHHHHHhhhCCCCCCCCccccC Confidence 89999999999766 567999999999999988766433 No 3 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=100.00 E-value=1.5e-215 Score=1198.35 Aligned_cols=466 Identities=17% Similarity=0.267 Sum_probs=429.3 Q ss_pred CCC-cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccC-ccccchHHHHHHHHHHhhcCh Q lcl|Aclame:pro 1 MPS-LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYG-GIEFNRFFLYDMYDRMDYTDP 78 (533) Q Consensus 1 ~~~-~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~yg-g~~~n~~~li~~YR~m~~~~P 78 (533) |+. |+||+|+||.+++++++++..|+++|+++|||++|+.+++++.+++++++.++. +.++|+++||++||+|+ +|| T Consensus 3 ~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma-~~p 81 (516) T protein:vir:10 3 FLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLI-NNP 81 (516) T ss_pred chHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHh-hcc Confidence 787 999999999999999999999999999999999999999999888887665554 56789999999999997 699 Q ss_pred hHHHHHHHhhceeeecCCCCceeeeecccccccHHH-------HHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCC Q lcl|Aclame:pro 79 LISTVLDIIADECTIPNENGNIVDVVTKDIELAKAI-------LSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSD 151 (533) Q Consensus 79 EV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si-------~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k 151 (533) |||+||++|||||||||.+++||+|+|+++++|++| |++++++|+|++++|++||+||||||+|||||+|+++ T Consensus 82 Evd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~~k 161 (516) T protein:vir:10 82 EVERAVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKLDTLFRRWYVDSRIFFHKIMPNPK 161 (516) T ss_pred chhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEecCcc Confidence 999999999999999999999999999999999997 4456779999999999999999999999999999999 Q ss_pred CCeeeeEEcCcceeeEEeeccCc-----------EEEEEeccccee---cc---cCCcccccCcccEEEEecCcccC-cc Q lcl|Aclame:pro 152 GTIEKFQVVSPYIFSKRYNPETD-----------TWYYVITDVYRN---VV---SGYFNEDIPEEDVIHFSHKIDTN-FF 213 (533) Q Consensus 152 ~gI~elr~ldP~~ik~v~d~~g~-----------~e~y~y~~~~~~---~~---~~~~~~~~~~~dvi~~~~~~~~d-~~ 213 (533) +||+|||+|||++|++||.+.+. ++||+|+++... ++ +++++.++ +.++|+|+|+++.| |+ T Consensus 162 ~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI-~~dAI~y~hSGL~d~~~ 240 (516) T protein:vir:10 162 KGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKI-PRSAVVYASSGLMDCSD 240 (516) T ss_pred ccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceee-chhheeeecccceeCCC Confidence 99999999999999999977543 389999875432 22 22333444 46999999988877 56 Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeeccccc Q lcl|Aclame:pro 214 PYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNY 293 (533) Q Consensus 214 ~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~ 293 (533) ++++||||+|+|||||||||||||||||+||||+|||||||||||||.||+|||++||++||||+|||++||+|++++++ T Consensus 241 ~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~ 320 (516) T protein:vir:10 241 RGIIGYLHNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTVKNQKRN 320 (516) T ss_pred CceeeeehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhh Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999985 Q ss_pred chhhhHHhhhhcccccCCCcceeeecCCC-CCChHHHHHHHHHHHHHhcCCCeeeccCCCCc----cchhhhhHHHHHHH Q lcl|Aclame:pro 294 FSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAEDVEYMLNRLISALKVPKAFIGYEGDV----NAKNTLATQDIKFN 368 (533) Q Consensus 294 ~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~----gr~~eI~rde~kF~ 368 (533) ||||||||||||+|||||||+||||| |||+|+||+||++|||+|||||+|||+++++| ||++||||||+||+ T Consensus 321 ---msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~ 397 (516) T protein:vir:10 321 ---LSMTEDYWLMRRDGKSVTEVSSLPGAQTMGDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFR 397 (516) T ss_pred ---hhhHhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHH Confidence 99999999999999999999999998 89999999999999999999999999998873 89999999999999 Q ss_pred HHHHHHHHHHH----HHHhhhhhhccCCCccce-------eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhH----H Q lcl|Aclame:pro 369 NTIKRIQGFFV----EELERMVRMNKEFADQDF-------RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRE----D 433 (533) Q Consensus 369 kfI~rLr~~F~----~~l~~qLilk~i~t~eew-------~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk----~ 433 (533) |||+|||++|+ ++|++|||||||||++|| +|+|++||||+|+|++|||++|+++|++++||||| + T Consensus 398 KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~ 477 (516) T protein:vir:10 398 KFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKYVSHD 477 (516) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchH Confidence 99999999987 679999999999999999 59999999999999999999999999999999998 5 Q ss_pred HHHHHHhcCChhhh-HHHHHHhhhcccCCCCCccccccc Q lcl|Aclame:pro 434 WIYSNILQIPYDLK-PQEEVAEAAGGGGLFDTGGFGEET 471 (533) Q Consensus 434 ~i~k~il~~tde~~-~q~~~i~~E~~~~~~~~~~~~~~~ 471 (533) ||||+||+||||++ +++++|++|.++++++.|+.++.- T Consensus 478 yi~k~ILr~tDeei~~e~k~I~~E~~~~~~~~p~~~~~f 516 (516) T protein:vir:10 478 YVMKNILQMTEEQIAQEEKQIEQEAGIKRFQNPENEDDF 516 (516) T ss_pred HHHHHHhcCCHhhHHHHHHHHHHhhhCCCCCCCCccccC Confidence 89999999999766 567999999999999988766433 No 4 >protein:vir:106282 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944108;genbank:gi:38640152;genbank:GeneID:2658030 Probab=100.00 E-value=5.9e-215 Score=1195.04 Aligned_cols=467 Identities=18% Similarity=0.297 Sum_probs=426.9 Q ss_pred CCC-cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccC--ccccchHHHHHHHHHHhhcC Q lcl|Aclame:pro 1 MPS-LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYG--GIEFNRFFLYDMYDRMDYTD 77 (533) Q Consensus 1 ~~~-~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~yg--g~~~n~~~li~~YR~m~~~~ 77 (533) |.. |+||.|+||+++++++++++.|+++|+++|||++|+++++.+.+.+.+.+.|+| +.++|+++||++||+|+ +| T Consensus 5 ~l~lf~f~~k~~e~~~~~~~~~~~~s~~~p~~~dGa~~I~~~~~~~~~~~~~~~~~~~~~~~~~n~~eLI~~YR~ma-~~ 83 (521) T protein:vir:10 5 FLKLLQPWMKDDEKRVQSDLSDRIDSFAVPDTADGAIEVDKQIDTTAPKTAIVQSVLGYAPKIQNTKDLINQYRSLS-KY 83 (521) T ss_pred hhHHhhhhhhhhhhHHhhhhccCccccccccCCCCceeeccCCCccccccchhhhhhccccccchHHHHHHHHHHHh-hc Confidence 444 999999999999999999999999999999999999998888655555566666 55789999999999997 69 Q ss_pred hhHHHHHHHhhceeeecCCCCceeeeecccccccHHH-------HHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeec-- Q lcl|Aclame:pro 78 PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAI-------LSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEK-- 148 (533) Q Consensus 78 PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si-------~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid-- 148 (533) ||||+||++|||||||||.+++||+|+|+++++|++| |++++++|+|++++|++||+||||||+|||||+| T Consensus 84 pEvd~Av~eIvneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fHkiid~~ 163 (521) T protein:vir:10 84 HEVDNAIDEIINDAIVQEDNRDTVYLDLDKTDWNESVKEMVREEFRTILKLLKFEREGKRHFRRWYVDSRIYFHKMIDPA 163 (521) T ss_pred cchhhHHHhhhcceEEecCCCceEEEEecCcccchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeeEEEEEEeeCC Confidence 9999999999999999999999999999999999997 4456789999999999999999999999999997 Q ss_pred CCCCCeeeeEEcCcceeeEEeeccCc-----------EEEEEecccc--ee--cccCCcccccCcccEEEEecCcccCc- Q lcl|Aclame:pro 149 GSDGTIEKFQVVSPYIFSKRYNPETD-----------TWYYVITDVY--RN--VVSGYFNEDIPEEDVIHFSHKIDTNF- 212 (533) Q Consensus 149 ~~k~gI~elr~ldP~~ik~v~d~~g~-----------~e~y~y~~~~--~~--~~~~~~~~~~~~~dvi~~~~~~~~d~- 212 (533) ++++||+|||+|||++|++||.+.++ ++||+|++.. .+ ++++++..+++ .++|+|+|+++.|| T Consensus 164 ~pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~~g~~~~~vkI~-~daI~y~hSGL~d~~ 242 (521) T protein:vir:10 164 RPKDGIKELRLLDPRNVEYYRVNLKSNENGNDVYKGVKEFFTYGATEDNRYNISGNSNNLVQIP-IDAIVYSHSGKVDID 242 (521) T ss_pred CccccceeeeeeCCcceeeeeeecCCCCCcchhhccceeeeeeccCCCceecCCCCCCcceeec-hhheeeecccceeCC Confidence 57899999999999999999987765 5899998632 22 33344445566 59999999888885 Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccc Q lcl|Aclame:pro 213 FPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDN 292 (533) Q Consensus 213 ~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~ 292 (533) +++++||||+|+|||||||||||||||||+||||+|||||||||||||.||+|||++||++||||+|||++||+|+++++ T Consensus 243 ~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~~iM~k~kNklVYDa~TGev~ddrk 322 (521) T protein:vir:10 243 GKTIVGYLHNVIKPANQLKMLEDAMVIYRITRAPERRVFYIDVGTMPNKKATQHLNNVMQGLKNRVVYDSSTGKVKNSSN 322 (521) T ss_pred CCceeccchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceeccchh Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999998 Q ss_pred cchhhhHHhhhhcccccCCCcceeeecCCC-CCChHHHHHHHHHHHHHhcCCCeeeccCCCC---ccchhhhhHHHHHHH Q lcl|Aclame:pro 293 YFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAEDVEYMLNRLISALKVPKAFIGYEGD---VNAKNTLATQDIKFN 368 (533) Q Consensus 293 ~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~---~gr~~eI~rde~kF~ 368 (533) + ||||||||||||+|||||||+||||| |||+|+||+||++|||+|||||+|||+.+++ +||++||||||+||+ T Consensus 323 ~---msMlEDyWLpRReGgrgTEI~TLpggqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~f~~Gr~~EItRDEikF~ 399 (521) T protein:vir:10 323 N---LAMTEDYWLMRRDGKATTEVSTLPGAQSMGEMDDVRWFNRKLYESMKIPLSRLPQEGAGVTFGAGNDITRDELQFT 399 (521) T ss_pred h---hhhHhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCccccCCCCCceecccccchhHHHHHHH Confidence 5 99999999999999999999999998 8999999999999999999999999998863 599999999999999 Q ss_pred HHHHHHHHHHH----HHHhhhhhhccCCCccce-------eEEecCCcHHHHHHHHHHHHHHHHHHHHhhh--hhhH--- Q lcl|Aclame:pro 369 NTIKRIQGFFV----EELERMVRMNKEFADQDF-------RLVMNRSNSIVEGERFAVIEQRIGIAERLKG--WVRE--- 432 (533) Q Consensus 369 kfI~rLr~~F~----~~l~~qLilk~i~t~eew-------~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~p--yvgk--- 432 (533) |||+|||++|+ ++|++|||||||||++|| +|+|++||||+|+|++|||++|+++|++++| |||| T Consensus 400 KFI~rLR~rFs~~f~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~eil~~R~~~l~~~dp~~yvGky~s 479 (521) T protein:vir:10 400 KYIRGLQQQFEPIFLNPLRTNLMLKGKMSVSEWEEQAENIKVVFSKDSYYEEIKDVEILERRVNLVQTLASAEVTGKYLS 479 (521) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHhhcCccccccccc Confidence 99999999987 679999999999999999 5999999999999999999999999999999 7777 Q ss_pred -HHHHHHHhcCChhhh-HHHHHHhhhcccCCCCCcccccccc Q lcl|Aclame:pro 433 -DWIYSNILQIPYDLK-PQEEVAEAAGGGGLFDTGGFGEETT 472 (533) Q Consensus 433 -~~i~k~il~~tde~~-~q~~~i~~E~~~~~~~~~~~~~~~~ 472 (533) +||||+||+|||+++ +++++|++|.+++++++++++++-= T Consensus 480 ~dyi~k~ILr~tDeeik~~~k~I~~E~~~~~~~~p~~e~~df 521 (521) T protein:vir:10 480 HEYVMKNILRMSDEDIKTEREKIDGELKDSVYKNPEDPMEEF 521 (521) T ss_pred hHHHHHHHhcCCHhHHHHHHHHHHHhhhCCCCCCCcchhhcC Confidence 689999999998555 6789999999999999888774433 No 5 >protein:vir:6596 Length: 521 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891727;genbank:gi:33620636;genbank:GeneID:1725288 Probab=100.00 E-value=2.7e-214 Score=1191.41 Aligned_cols=467 Identities=19% Similarity=0.318 Sum_probs=422.1 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchh-hcccccC--ccccchHHHHHHHHHHhhcC Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAG-YASRFYG--GIEFNRFFLYDMYDRMDYTD 77 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~-~~~~~yg--g~~~n~~~li~~YR~m~~~~ 77 (533) +-.|+||+++|+++++++++++..||++|+++|||++|+++++++.+++. ..+.+++ +.++|+++||++||+|+ +| T Consensus 5 l~~~~~~~~~d~~~~~e~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~~~g~~~~~~~~e~~~~~~~eLI~~YR~ma-~~ 83 (521) T protein:vir:65 5 LKMLARWADFDNDKYEEQIKDKAESIAAPKNNDGATEVEINDNSPASSWNSLTQQFYSTDQKISTTKQLVNTYRGLM-NN 83 (521) T ss_pred hhhhhhccCchhhHHHhhhccCCCcccCCCCCCCceeecccCCccccccccceeeeccccchhhhHHHHHHHHHHHh-hc Confidence 45599999999999999999999999999999999999999888865432 2233333 45789999999999997 69 Q ss_pred hhHHHHHHHhhceeeecCCCCceeeeecccccccHHH-------HHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeec-C Q lcl|Aclame:pro 78 PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAI-------LSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEK-G 149 (533) Q Consensus 78 PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si-------~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid-~ 149 (533) ||||+||++|||||||||.+++||+|+|+++++|++| |++++++|+|++++|++||+||||||+|||||+| + T Consensus 84 pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~ 163 (521) T protein:vir:65 84 HEVENAVQNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLNTIQFDRRGQDMFRRWYVDSRIFFHKIIGKN 163 (521) T ss_pred cchhhHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceeEEEEEEcCC Confidence 9999999999999999999999999999999999997 4456789999999999999999999999999986 5 Q ss_pred CCCCeeeeEEcCcceeeEEeeccCc-----------EEEEEecccce---ecc---cCCcccccCcccEEEEecCcccCc Q lcl|Aclame:pro 150 SDGTIEKFQVVSPYIFSKRYNPETD-----------TWYYVITDVYR---NVV---SGYFNEDIPEEDVIHFSHKIDTNF 212 (533) Q Consensus 150 ~k~gI~elr~ldP~~ik~v~d~~g~-----------~e~y~y~~~~~---~~~---~~~~~~~~~~~dvi~~~~~~~~d~ 212 (533) +++||+|||+|||++|++||.+.+. ++||+|++... .++ +++...++ +.++|+|+|+++.|| T Consensus 164 pk~GI~ELr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~vkI-~~dAI~y~hSGl~d~ 242 (521) T protein:vir:65 164 PKDGIVELRQLDPRNLEYVREIITEDTPEGKIYKATKEYFIYTVGNSSYCAGGQVFSPNSRVKI-PRSAITYAHSGLMDC 242 (521) T ss_pred ccccceeeeeeCCcceeeeeeecccccCCcceecceeeeeeeecCCcceeccceeecCCcceee-chhheeeeeccceeC Confidence 7899999999999999999977764 58999976432 222 23333444 479999999988886 Q ss_pred -ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeeccc Q lcl|Aclame:pro 213 -FPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGID 291 (533) Q Consensus 213 -~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~ 291 (533) +++++||||+|+|||||||||||||||||+||||+|||||||||||||.||+|||++||++||||+|||++||+|++++ T Consensus 243 ~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ddr 322 (521) T protein:vir:65 243 DDKYIIGYLHRAVKPANQLKLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDASTGKLKNQQ 322 (521) T ss_pred CCCeeeecchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeecccccccccc Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccchhhhHHhhhhcccccCCCcceeeecCCC-CCChHHHHHHHHHHHHHhcCCCeeeccCCCC--c--cchhhhhHHHHH Q lcl|Aclame:pro 292 NYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAEDVEYMLNRLISALKVPKAFIGYEGD--V--NAKNTLATQDIK 366 (533) Q Consensus 292 ~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~--~--gr~~eI~rde~k 366 (533) ++ ||||||||||||+|||||||+||||| |||+|+||+||++|||+|||||+|||+.+++ | ||++||||||+| T Consensus 323 k~---msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~gr~~EItRDEiK 399 (521) T protein:vir:65 323 AN---LSMTEDYWLQRRDGKAITDVTTLPGASGMSDIDDIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDELE 399 (521) T ss_pred cc---cchhhhhcccccCCCCccceeecccCCCcChHHHHHHHHHHHHHHhCCCceeccCCCCcceeccccchhhHHHHH Confidence 86 99999999999999999999999998 9999999999999999999999999976653 3 899999999999 Q ss_pred HHHHHHHHHHHHH----HHHhhhhhhccCCCccce-------eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhH--- Q lcl|Aclame:pro 367 FNNTIKRIQGFFV----EELERMVRMNKEFADQDF-------RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRE--- 432 (533) Q Consensus 367 F~kfI~rLr~~F~----~~l~~qLilk~i~t~eew-------~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk--- 432 (533) |+|||+|||++|+ ++|++|||||||||++|| +|+|++||||+|+|++|||++|+++|++++||||| T Consensus 400 F~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~S 479 (521) T protein:vir:65 400 FSKFIRTLQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFS 479 (521) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccc Confidence 9999999999987 679999999999999999 59999999999999999999999999999999987 Q ss_pred -HHHHHHHhcCChhhh-HHHHHHhhhcccCCCCCcccccccc Q lcl|Aclame:pro 433 -DWIYSNILQIPYDLK-PQEEVAEAAGGGGLFDTGGFGEETT 472 (533) Q Consensus 433 -~~i~k~il~~tde~~-~q~~~i~~E~~~~~~~~~~~~~~~~ 472 (533) +||||+||+|||+++ +++++|++|.+++++++++.+++-= T Consensus 480 ~dyi~k~ILr~tDeei~~~~k~I~~E~~~~~~~~p~~~~~~f 521 (521) T protein:vir:65 480 NQTVMRDILKYTDDQMDTEKKQIEEEANDPRFKQTPDEIEDF 521 (521) T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHhhhCCCCCCCcccccCC Confidence 589999999999665 5689999999999999888665433 No 6 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=100.00 E-value=4.2e-214 Score=1190.41 Aligned_cols=465 Identities=19% Similarity=0.303 Sum_probs=426.9 Q ss_pred CCC-cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccC--ccccchHHHHHHHHHHhhcC Q lcl|Aclame:pro 1 MPS-LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYG--GIEFNRFFLYDMYDRMDYTD 77 (533) Q Consensus 1 ~~~-~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~yg--g~~~n~~~li~~YR~m~~~~ 77 (533) |+. |+||+|+|+.+++++++++..|+++|+++|||.+|+.+++++.+++++ |.||+ +..+|+++||++||+|+ .| T Consensus 3 ~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~DGa~~i~~~~~~~~~~g~~-~~~~d~~~~~~~~~~LI~~YR~ma-~~ 80 (516) T protein:vir:10 3 FLDLFKFWDRVDQNEYDERLKQGHESIATPKKDDGATEIEAREGESSYNALM-QQFFGIDNNISGTKDLINTYRQLT-NN 80 (516) T ss_pred chHhcccccchhhHHHHhhhcCCCCcccCCCCccCceeeecCccccccccee-eeeecccCccccHHHHHHHHHHhh-hc Confidence 787 999999999999999999999999999999999999987887766665 34555 66889999999999998 58 Q ss_pred hhHHHHHHHhhceeeecCCCCceeeeecccccccHHH-------HHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCC Q lcl|Aclame:pro 78 PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAI-------LSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGS 150 (533) Q Consensus 78 PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si-------~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~ 150 (533) ||||+||++|||||||||.+++||+|+|+++++|++| |++++++|+|++++|++||+||||||+|||||+|++ T Consensus 81 pEvd~Av~eIvneaiv~d~~~~pV~l~l~~~e~s~sik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~~ 160 (516) T protein:vir:10 81 PEVERAVANIVNEAVVYEKGHKVVSLDLDDTEFSSSIKDKILEEFDEICRLLDASRKLDTLFRRWYIDSRIFFHKIMPNP 160 (516) T ss_pred cchhHHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHHhhhhcceEEEEEEecCc Confidence 9999999999999999999999999999999999997 445678999999999999999999999999999999 Q ss_pred CCCeeeeEEcCcceeeEEeeccCc-----------EEEEEeccc---ceeccc---CCcccccCcccEEEEecCcccCc- Q lcl|Aclame:pro 151 DGTIEKFQVVSPYIFSKRYNPETD-----------TWYYVITDV---YRNVVS---GYFNEDIPEEDVIHFSHKIDTNF- 212 (533) Q Consensus 151 k~gI~elr~ldP~~ik~v~d~~g~-----------~e~y~y~~~---~~~~~~---~~~~~~~~~~dvi~~~~~~~~d~- 212 (533) ++||+|||+|||++|++||.+.++ ++||+|+++ +.+++. ++.+.++ +.++|+|+|+++.|| T Consensus 161 k~GI~elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI-~~daI~y~hSGl~d~~ 239 (516) T protein:vir:10 161 KEGIVELRRLDPRHVEYYREIVTSDVGGTSVVKGYREFFVYTTGNEGYAYNGRLFEPNTRIKI-PRSAIVYAHSGLQDCS 239 (516) T ss_pred ccceeeeeeeCCcceeeEEeeecccCcchhhhhceeeeeeeecCccceeccccccCCCCceec-chhheeeeecCcccCC Confidence 999999999999999999987554 589999643 334442 2233344 479999999998886 Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccc Q lcl|Aclame:pro 213 FPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDN 292 (533) Q Consensus 213 ~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~ 292 (533) +++++||||+|+|||||||||||||||||+||||+|||||||||||||.||+|||++||++||||+|||++||+|+++++ T Consensus 240 ~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~KNklvYDa~TGev~ddrk 319 (516) T protein:vir:10 240 DRGIVGYLHNAVKPANQLKLLEDALVIYRITRAPERRVFYIDVGNMPNRKATEYVNGIMQSLKNRVVYDSNTGTVKNQKR 319 (516) T ss_pred CCceeceehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchh Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998 Q ss_pred cchhhhHHhhhhcccccCCCcceeeecCCC-CCChHHHHHHHHHHHHHhcCCCeeeccCCCCc----cchhhhhHHHHHH Q lcl|Aclame:pro 293 YFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAEDVEYMLNRLISALKVPKAFIGYEGDV----NAKNTLATQDIKF 367 (533) Q Consensus 293 ~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~----gr~~eI~rde~kF 367 (533) + ||||||||||||+|||||||+||||| |||+|+||+||++|||+|||||+|||+++++| ||++||||||+|| T Consensus 320 ~---msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~SRl~~e~~~~~~~Gr~~EItRDEiKF 396 (516) T protein:vir:10 320 N---LSMTEDYWLMRRDGKSVTEVTSLPGAQTMGEMDDVRWFNKKLYEALRIPLSRMPRDDGGMVIGGQDMAITRDELDF 396 (516) T ss_pred h---hhhHhhhcccccCCCcccceeeccccCCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHH Confidence 5 99999999999999999999999998 89999999999999999999999999998863 8999999999999 Q ss_pred HHHHHHHHHHHH----HHHhhhhhhccCCCccce-------eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhH---- Q lcl|Aclame:pro 368 NNTIKRIQGFFV----EELERMVRMNKEFADQDF-------RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRE---- 432 (533) Q Consensus 368 ~kfI~rLr~~F~----~~l~~qLilk~i~t~eew-------~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk---- 432 (533) +|||+|||++|+ ++|++|||||||||++|| +|+|++||||+|+|++|||++|+++|++++||||| T Consensus 397 ~KFI~rLR~rFs~lF~~~L~~qLilKgIit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~ 476 (516) T protein:vir:10 397 RKFIVQLQHNFEEIFLDPLKTNLIYKKIILESEWEEQINNIKVNFHQDSYYTELKDIETLRQRVDALSQIEPYVGKYVSH 476 (516) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccch Confidence 999999999876 789999999999999999 59999999999999999999999999999999998 Q ss_pred HHHHHHHhcCChhhh-HHHHHHhhhcccCCCCCccccccc Q lcl|Aclame:pro 433 DWIYSNILQIPYDLK-PQEEVAEAAGGGGLFDTGGFGEET 471 (533) Q Consensus 433 ~~i~k~il~~tde~~-~q~~~i~~E~~~~~~~~~~~~~~~ 471 (533) +||||+||+||||++ +++++|++|.++++++.|+.+++- T Consensus 477 ~yi~k~ILr~tDeei~~~~k~I~~E~~~~~~~~p~~e~~f 516 (516) T protein:vir:10 477 DYVMKNILQMTDEQIAQEEKQIEKEANVKRFQNPENEDDF 516 (516) T ss_pred HHHHHHHhcCCHhHHHHHHHHHHHhhhCCCCCCCCccccC Confidence 589999999999766 567999999999999888766444 No 7 >protein:vir:108049 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595296;genbank:gi:161622602;genbank:GeneID:5783768 Probab=100.00 E-value=7.3e-214 Score=1189.09 Aligned_cols=466 Identities=19% Similarity=0.300 Sum_probs=423.5 Q ss_pred CCC-cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCc---cccchHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MPS-LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGG---IEFNRFFLYDMYDRMDYT 76 (533) Q Consensus 1 ~~~-~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg---~~~n~~~li~~YR~m~~~ 76 (533) |.. |+||.|+||++++++++++..|+++|+++|||++|+.+++.. ..+.++|++|++ .++|+++||++||+|+ + T Consensus 7 ~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~~dGa~~I~~~~~~~-~~~~~~q~~y~~~e~~~~~~~eLI~~YR~ma-~ 84 (524) T protein:vir:10 7 ILSFLKPWANEDEKEYKQQINNNLESVTAPKLDDGAREIETQEQNI-PYNALMQQMFGSNEPEVKNTRELIDTYRNLM-N 84 (524) T ss_pred HHHHhhhhhcchhhhhhhhhccCCCccccCCCCCCceeeccCcccc-cchhhhhhhhhcccchhhhHHHHHHHHHHHh-h Confidence 666 999999999999999999999999999999999999997554 444566778874 4679999999999997 6 Q ss_pred ChhHHHHHHHhhceeeecCCCCceeeeecccccccHHH-------HHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeec- Q lcl|Aclame:pro 77 DPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAI-------LSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEK- 148 (533) Q Consensus 77 ~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si-------~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid- 148 (533) |||||+||++|||||||||.+++||+|+|+++++|++| |++++++|+|++++|++||+||||||+|||||+| T Consensus 85 ~pEvd~Av~eIVneaiv~d~~~~pV~l~Ld~~~~s~siK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fHkiid~ 164 (524) T protein:vir:10 85 NYEVDNAVQEIVSDAIVYEDDKEVVALNLDGTDFSQSIKDKILAEFSEVLNLLNFQRKGTDHFQRWYVDSRIFFHKIINP 164 (524) T ss_pred ccchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeceEEEEEEeeC Confidence 99999999999999999999999999999999999997 4456789999999999999999999999999997 Q ss_pred -CCCCCeeeeEEcCcceeeEEeeccCc-----------EEEEEeccccee---cc---cCCcccccCcccEEEEecCccc Q lcl|Aclame:pro 149 -GSDGTIEKFQVVSPYIFSKRYNPETD-----------TWYYVITDVYRN---VV---SGYFNEDIPEEDVIHFSHKIDT 210 (533) Q Consensus 149 -~~k~gI~elr~ldP~~ik~v~d~~g~-----------~e~y~y~~~~~~---~~---~~~~~~~~~~~dvi~~~~~~~~ 210 (533) ++++||+|||+|||++|++||.+.++ .+||+|+++... ++ +++...+++ .++|+|+|+++. T Consensus 165 ~~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~~~~~~~~~~~~~~ikI~-~dAIvy~~SGL~ 243 (524) T protein:vir:10 165 KKMKDGVQELRRLDPRQVQYIREIVTRMEDGVKIVDGYREFFVYDTGHESYCADGRIYSAGTKVKIP-RAAVVYAHSGLL 243 (524) T ss_pred CCccccceeeeeeCCccceeeeeecccCcccchhhcchhhheeecCCCcccccCcceecCCcceecc-hhheeeeccCcc Confidence 57899999999999999999988765 489999875322 22 334445566 466777776666 Q ss_pred Cc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeec Q lcl|Aclame:pro 211 NF-FPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLG 289 (533) Q Consensus 211 d~-~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d 289 (533) || +++++||||+|+|||||||||||||||||+||||+|||||||||||||.||+|||++||++||||+|||++||+|++ T Consensus 244 d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnlPk~KAeqYl~~im~k~kNKlvYDa~TGev~d 323 (524) T protein:vir:10 244 DCCGKNIIGYLQRAIKPANQLKLMEDAMVIYRITRAPDRRVFYIDTGNMPSRKAAAQMQHIMNTMKNRVVYDASTGKIKN 323 (524) T ss_pred cCCCCceeccchHhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeccCCeecc Confidence 65 57999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccchhhhHHhhhhcccccCCCcceeeecCCC-CCChHHHHHHHHHHHHHhcCCCeeeccCCCC----ccchhhhhHHH Q lcl|Aclame:pro 290 IDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAEDVEYMLNRLISALKVPKAFIGYEGD----VNAKNTLATQD 364 (533) Q Consensus 290 ~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~----~gr~~eI~rde 364 (533) ++++ ||||||||||||+|||||||+||||| |||+|+||+||++|||+|||||+|||+++++ +||++|||||| T Consensus 324 drk~---msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~f~~gr~~EItRDE 400 (524) T protein:vir:10 324 QQHN---MSMTEDYWLQRRDGKAVTEVDTMPGATGMSDMDDVLYFRTALYRALRIPESRIPSESNSGVMFDAGTAITRDE 400 (524) T ss_pred chhh---hhhHhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCchhccCCCCccccccccchhhHHH Confidence 9985 99999999999999999999999998 8999999999999999999999999987753 59999999999 Q ss_pred HHHHHHHHHHHHHHH----HHHhhhhhhccCCCccce-------eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhH- Q lcl|Aclame:pro 365 IKFNNTIKRIQGFFV----EELERMVRMNKEFADQDF-------RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRE- 432 (533) Q Consensus 365 ~kF~kfI~rLr~~F~----~~l~~qLilk~i~t~eew-------~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk- 432 (533) +||+|||+|||++|+ ++|++|||||||||++|| +|+|++||||+|+|++|||++|+++|++++||||| T Consensus 401 iKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky 480 (524) T protein:vir:10 401 LKFAKWIRQLQNKFEEIFLDPLKTNLILKKIITEDEWEREINNIKVTFNRDSYFSEMKDAEIMERRINMLTMAEPFIGKY 480 (524) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccc Confidence 999999999999987 679999999999999999 59999999999999999999999999999999987 Q ss_pred ---HHHHHHHhcCChhhh-HHHHHHhhhcccCCCCCcccccccc Q lcl|Aclame:pro 433 ---DWIYSNILQIPYDLK-PQEEVAEAAGGGGLFDTGGFGEETT 472 (533) Q Consensus 433 ---~~i~k~il~~tde~~-~q~~~i~~E~~~~~~~~~~~~~~~~ 472 (533) +||||+||+|||+++ +++++|++|.+++++++++.+++.= T Consensus 481 ~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~~~~~~~~f 524 (524) T protein:vir:10 481 ISHQTAMKDFLQMTDEEINQEAKQIEEESKEARFQNPDEEEEDF 524 (524) T ss_pred chhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCChhhhcC Confidence 589999999999665 5689999999999999998765443 No 8 >protein:vir:81017 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469501;genbank:gi:157311458;genbank:GeneID:5602316 Probab=100.00 E-value=3.6e-213 Score=1185.29 Aligned_cols=467 Identities=18% Similarity=0.297 Sum_probs=424.2 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccC---ccccchHHHHHHHHHHhhcC Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYG---GIEFNRFFLYDMYDRMDYTD 77 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~yg---g~~~n~~~li~~YR~m~~~~ 77 (533) +-.|++|.++|+++++++++++..|+++|+++|||.+|+.++++|.+++....++|. +.++|+++||++||+|+ +| T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~s~~~P~~~dGa~~i~~~~~~~~~~~gg~~~~~~~~e~~~~~~~eLI~~YR~ma-~~ 83 (521) T protein:vir:81 5 LKMLARWADFDNDKYEEQIKDKAESIAAPKNNDGATEVEINDNLPASAWNSLTQQFYSTDQKISTTKQLVNTYRGLM-NN 83 (521) T ss_pred hhhhHhhcCchhhhHHhhhccCccccccCCCCCCceEecccCCCcceeecceeeeecccccchhhHHHHHHHHHHHh-hc Confidence 444999999999999999999999999999999999999999988766444444444 45679999999999997 69 Q ss_pred hhHHHHHHHhhceeeecCCCCceeeeecccccccHHH-------HHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeec-C Q lcl|Aclame:pro 78 PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAI-------LSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEK-G 149 (533) Q Consensus 78 PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si-------~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid-~ 149 (533) ||||+||++|||||||||.+++||+|+|+++++|++| |++++++|+|++++|++||+||||||+|||||+| + T Consensus 84 pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~ 163 (521) T protein:vir:81 84 HEVENAVQNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLNTIQFDRRGQDMFRRWYVDSRIFFHKIIGKN 163 (521) T ss_pred cchhhHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEEcCC Confidence 9999999999999999999999999999999999997 4456789999999999999999999999999986 5 Q ss_pred CCCCeeeeEEcCcceeeEEeeccCc-----------EEEEEecccceec---c---cCCcccccCcccEEEEecCcccCc Q lcl|Aclame:pro 150 SDGTIEKFQVVSPYIFSKRYNPETD-----------TWYYVITDVYRNV---V---SGYFNEDIPEEDVIHFSHKIDTNF 212 (533) Q Consensus 150 ~k~gI~elr~ldP~~ik~v~d~~g~-----------~e~y~y~~~~~~~---~---~~~~~~~~~~~dvi~~~~~~~~d~ 212 (533) +++||+|||+|||++|++||.+.+. ++||+|+++.... + +++...++ +.++|+|+|+++.|| T Consensus 164 pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~vkI-~~dAI~y~hSGl~d~ 242 (521) T protein:vir:81 164 PKDGIVELRQLDPRNLEYVREIITEDTPEGKIYKATKEYFIYTVGNSSYCAGGQVFSPNSRVKI-PRSAITYAHSGLMDC 242 (521) T ss_pred ccccceeeeeeCCcceeeeeeecccccCccceecceeeeeeeecCCccccccceeecCCcceee-chhheeeeeccceeC Confidence 7899999999999999999987754 5899998864332 2 22333344 479999999888886 Q ss_pred -ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeeccc Q lcl|Aclame:pro 213 -FPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGID 291 (533) Q Consensus 213 -~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~ 291 (533) +++++||||+|+|||||||||||||||||+||||+|||||||||||||.||+|||++||++||||+|||++||+|++++ T Consensus 243 ~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddr 322 (521) T protein:vir:81 243 DDKYIIGYLHRAVKPANQLKLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDASTGKLKNQQ 322 (521) T ss_pred CCCeeeecchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeecccccccccc Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccchhhhHHhhhhcccccCCCcceeeecCCC-CCChHHHHHHHHHHHHHhcCCCeeeccCCCC----ccchhhhhHHHHH Q lcl|Aclame:pro 292 NYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAEDVEYMLNRLISALKVPKAFIGYEGD----VNAKNTLATQDIK 366 (533) Q Consensus 292 ~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~----~gr~~eI~rde~k 366 (533) ++ ||||||||||||+|||||||+||||| |||+|+||+||++|||+|||||+|||+.+++ +||++||||||+| T Consensus 323 k~---msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiK 399 (521) T protein:vir:81 323 AN---LSMTEDYWLQRRDGKAITDVTTLPGASGMSDIDDIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDELE 399 (521) T ss_pred cc---cchhhhhcccccCCCcccceeecccCCCCChHHHHHHHHHHHHHHhCCccccccCCCCcceeccccchhhHHHHH Confidence 86 99999999999999999999999998 9999999999999999999999999976653 4899999999999 Q ss_pred HHHHHHHHHHHHH----HHHhhhhhhccCCCccce-------eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhH--- Q lcl|Aclame:pro 367 FNNTIKRIQGFFV----EELERMVRMNKEFADQDF-------RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRE--- 432 (533) Q Consensus 367 F~kfI~rLr~~F~----~~l~~qLilk~i~t~eew-------~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk--- 432 (533) |+|||+|||++|+ ++|++|||||||||++|| +|+|++||||+|+|++|||++|+++|++++||||| T Consensus 400 F~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s 479 (521) T protein:vir:81 400 FSKFIRTRQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFS 479 (521) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhhhhhccccc Confidence 9999999999987 679999999999999999 59999999999999999999999999999999987 Q ss_pred -HHHHHHHhcCChhhh-HHHHHHhhhcccCCCCCcccccccc Q lcl|Aclame:pro 433 -DWIYSNILQIPYDLK-PQEEVAEAAGGGGLFDTGGFGEETT 472 (533) Q Consensus 433 -~~i~k~il~~tde~~-~q~~~i~~E~~~~~~~~~~~~~~~~ 472 (533) +||||+||+||||++ +++++|++|.+++++++++.+++-= T Consensus 480 ~dyi~k~ILr~tDeei~~~~k~I~~E~~~~~~~~p~~~~~~f 521 (521) T protein:vir:81 480 NQTVMRDILKYTDDQMDTEKKQIEEEANDPRFKQTPDEIEDF 521 (521) T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHhhCCCCCCCcccccCC Confidence 589999999999665 5689999999999999888765433 No 9 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=100.00 E-value=7.4e-213 Score=1183.56 Aligned_cols=466 Identities=20% Similarity=0.331 Sum_probs=420.7 Q ss_pred CCC-cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccC---ccccchHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MPS-LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYG---GIEFNRFFLYDMYDRMDYT 76 (533) Q Consensus 1 ~~~-~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~yg---g~~~n~~~li~~YR~m~~~ 76 (533) |=+ ||+|+|+|+.+++++++++..|+++|+++|||++|+.+++++... ...+.+|+ +.++|+++||++||+|+ + T Consensus 9 ~l~~~~~~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~-g~~~~~y~~~e~~~~~~~eLI~~YR~ma-~ 86 (524) T protein:vir:98 9 VLSFFKNFAREDEIELEQQLKNDTGSVAPPKNNDGAYEIETDLNNQKYA-GVFQQFYSGQDPAIQNKEQLINTYRGIM-S 86 (524) T ss_pred HHHHhhhhhhhhhhhHhhhhcCCcccccCCCCCCCceeecCCCCcceec-ceeeeeccccccccchHHHHHHHHHHHh-h Confidence 223 899999999999999999999999999999999999998886444 44455565 55789999999999997 6 Q ss_pred ChhHHHHHHHhhceeeecCCCCceeeeecccccccHHH-------HHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeec- Q lcl|Aclame:pro 77 DPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAI-------LSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEK- 148 (533) Q Consensus 77 ~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si-------~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid- 148 (533) |||||+||++||||||||+.+++||+|+|+++++|++| |++++++|+|++++|++||+||||||+|||||+| T Consensus 87 ~pEvd~Av~eIVneaIv~~~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~ 166 (524) T protein:vir:98 87 YPEVENAVSEIIDDAIVNEQGKDIITMDLAKTNFSKAIQDKIVEEFDNVLNIYDFDNMGARLFRDWYVDSRIYFHKIMHK 166 (524) T ss_pred ccchhhHHHhhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceeEEEEEEcC Confidence 99999999999999999999999999999999999997 4456789999999999999999999999999987 Q ss_pred CCCCCeeeeEEcCcceeeEEeeccCc------------EEEEEeccccee---cc---cCCcccccCcccEEEEecCccc Q lcl|Aclame:pro 149 GSDGTIEKFQVVSPYIFSKRYNPETD------------TWYYVITDVYRN---VV---SGYFNEDIPEEDVIHFSHKIDT 210 (533) Q Consensus 149 ~~k~gI~elr~ldP~~ik~v~d~~g~------------~e~y~y~~~~~~---~~---~~~~~~~~~~~dvi~~~~~~~~ 210 (533) +++.||+|||+|||++|++||+..++ .+||+|++.... ++ +++...+++ .++|+|+|+++. T Consensus 167 ~~~kGI~ELr~lDPr~i~~vr~~~~~~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~-~dAIvy~hSGL~ 245 (524) T protein:vir:98 167 DESKGIRELRQLDPRCMELIRESITETLDGGVKVFRGYREFFVYSAPKAGYTYNGQIYQANQKIKIP-RSAIVYAHSGLE 245 (524) T ss_pred CCCcceeeeeeeCCccceeeeeccccccccchhhccceeeeeeeccCCCccccccceecCCCceeec-hhheeeeccCcc Confidence 45679999999999999999966543 489999864332 22 233344555 577888888888 Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecc Q lcl|Aclame:pro 211 NFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGI 290 (533) Q Consensus 211 d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~ 290 (533) ||+..++||||+|+|||||||||||||||||+||||+|||||||||||||.||+|||++||++||||+|||++||+|+|+ T Consensus 246 d~~~~iisyLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGevrdd 325 (524) T protein:vir:98 246 DCSNNIIGYLHRAVKPANQLRLLEDAMVIYRITRAPERRVFYIDVGQMGGNKATQYVNNIAQGLKNRVVYDARTGTVKNQ 325 (524) T ss_pred cCCCCeeeehhHhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeeccCceeecc Confidence 88777789999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccchhhhHHhhhhcccccCCCcceeeecCCC-CCChHHHHHHHHHHHHHhcCCCeeeccCCC-C--ccchhhhhHHHHH Q lcl|Aclame:pro 291 DNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAEDVEYMLNRLISALKVPKAFIGYEG-D--VNAKNTLATQDIK 366 (533) Q Consensus 291 ~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~-~--~gr~~eI~rde~k 366 (533) +++ ||||||||||||+|||||||+||||| |||+|+||+||++|||+|||||+|||+.++ + +||++||||||+| T Consensus 326 rk~---msMlEDyWLpRReGgrgTEItTLpggqnlgem~DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~EItRDEiK 402 (524) T protein:vir:98 326 QNN---LSMTEDYWLMRRDGKAITEVSTLPGGQNFSDMDDIKWFNRKLYEALRVPLSRMPRDDGGMQIGGGGEITRDELK 402 (524) T ss_pred ccc---cchhhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCceeccCCCCccccccccchhHHHHH Confidence 986 99999999999999999999999998 899999999999999999999999998544 4 5999999999999 Q ss_pred HHHHHHHHHHHHH----HHHhhhhhhccCCCccce-------eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhH--- Q lcl|Aclame:pro 367 FNNTIKRIQGFFV----EELERMVRMNKEFADQDF-------RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRE--- 432 (533) Q Consensus 367 F~kfI~rLr~~F~----~~l~~qLilk~i~t~eew-------~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk--- 432 (533) |+|||+|||++|+ ++|++|||||||||++|| +|+|++||||+|+|++|||++|+++|++++||||| T Consensus 403 F~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s 482 (524) T protein:vir:98 403 FSKFIRTLQIQFSPVLSDPLKTNLIAKKIITEDEWEENVSKISFVFQQDSYYAEVKDIEILERRLNLMSQVEGVVGKYVS 482 (524) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhccccccccc Confidence 9999999999987 679999999999999999 59999999999999999999999999999998887 Q ss_pred -HHHHHHHhcCChhhh-HHHHHHhhhcccCCCCCcccccccc Q lcl|Aclame:pro 433 -DWIYSNILQIPYDLK-PQEEVAEAAGGGGLFDTGGFGEETT 472 (533) Q Consensus 433 -~~i~k~il~~tde~~-~q~~~i~~E~~~~~~~~~~~~~~~~ 472 (533) +||||+||+|||+++ +++++|++|.+++++++++.+++.= T Consensus 483 ~dyi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~p~~e~~~f 524 (524) T protein:vir:98 483 HKYIMKEILRMSDEDIDEQAKLIEEESKEERFKNPEAEEENF 524 (524) T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCcCCccccccC Confidence 589999999999665 5689999999999999888775443 No 10 >protein:vir:6896 Length: 523 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861872;genbank:gi:32453663;genbank:GeneID:1494298 Probab=100.00 E-value=7.7e-213 Score=1183.47 Aligned_cols=467 Identities=19% Similarity=0.287 Sum_probs=426.7 Q ss_pred CCC-cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccc-hhhcccccC---ccccchHHHHHHHHHHhh Q lcl|Aclame:pro 1 MPS-LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFAT-AGYASRFYG---GIEFNRFFLYDMYDRMDY 75 (533) Q Consensus 1 ~~~-~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~-~~~~~~~yg---g~~~n~~~li~~YR~m~~ 75 (533) |.+ |+||+|+||++++++++..+.|+++|+++|||.+|+++.+.+.++ +.+.+.+|+ +.++|+++||++||+|+ T Consensus 5 ~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~dDGa~~i~~~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR~ma- 83 (523) T protein:vir:68 5 ILSLFAPWAKMDERDYKDQEKENLESITSPKLDDGAKEYEVSENEAQQTYNAMFQRMFGSQEPGLKSTRELIDTYRNLM- 83 (523) T ss_pred hhhhhhhhhhhhhhhhhhhhhccCCCccccCCCCcceeeeccccccccccchhhhhhhhccccccchHHHHHHHHHHHh- Confidence 666 999999999999999999999999999999999999998888533 556677777 45689999999999997 Q ss_pred cChhHHHHHHHhhceeeecCCCCceeeeecccccccHHH-------HHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeec Q lcl|Aclame:pro 76 TDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAI-------LSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEK 148 (533) Q Consensus 76 ~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si-------~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid 148 (533) +|||||+||++|||||||||.+++||+|+|+++++|++| |++++++|+|++++|++||+||||||+|||||+| T Consensus 84 ~~pEvd~Av~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid 163 (523) T protein:vir:68 84 TNYEVDNAVSEIVSDAIVYEDDTEVVSINLDNTKFSPNIKSMMLDEFNEVLNHLSFQRKGSDHFRRWYVDSRIFFHKIID 163 (523) T ss_pred hccchhhHHHHhhcceeeecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHHhheeeeEEEEEEEee Confidence 699999999999999999999999999999999999997 4456789999999999999999999999999998 Q ss_pred C--CCCCeeeeEEcCcceeeEEeeccCc-----------EEEEEecccceec---c---cCCcccccCcccEEEEecCcc Q lcl|Aclame:pro 149 G--SDGTIEKFQVVSPYIFSKRYNPETD-----------TWYYVITDVYRNV---V---SGYFNEDIPEEDVIHFSHKID 209 (533) Q Consensus 149 ~--~k~gI~elr~ldP~~ik~v~d~~g~-----------~e~y~y~~~~~~~---~---~~~~~~~~~~~dvi~~~~~~~ 209 (533) + +++||+|||+|||++|++||.+.++ ++||+|++++... + +++...+++ .++|+|+|+++ T Consensus 164 ~k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~g~~vi~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~-~dAI~y~hSGL 242 (523) T protein:vir:68 164 PKRPKEGIKELRRLDPRQVQYVREVITTTEAGVKIVKGYKEYFIYDTSHESYACDGRIYEAGTKIKIP-KAAIVYAHSGL 242 (523) T ss_pred CCCccccceeeeeeCCcceeEEEeecCCCCcchhhhhhhhhheeeccccccccccccccCCCcceecc-hhheeeeeccc Confidence 4 6899999999999999999987765 4899999875432 2 123334444 68999999887 Q ss_pred cCc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeee Q lcl|Aclame:pro 210 TNF-FPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFL 288 (533) Q Consensus 210 ~d~-~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~ 288 (533) .|| +++++||||+|+|||||||||||||||||+||||+|||||||||||||.||+|||++||++||||+|||++||+|+ T Consensus 243 ~d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNKlvYDa~TGev~ 322 (523) T protein:vir:68 243 VDCCGKNIIGYLHRAIKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPSRKAAEHMQHVMNTMKNRIAYDATTGKIK 322 (523) T ss_pred eeCCCCceeccchhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhhcceeEEeccCCeec Confidence 776 4699999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccchhhhHHhhhhcccccCCCcceeeecCCC-CCChHHHHHHHHHHHHHhcCCCeeeccCCCC---ccchhhhhHHH Q lcl|Aclame:pro 289 GIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAEDVEYMLNRLISALKVPKAFIGYEGD---VNAKNTLATQD 364 (533) Q Consensus 289 d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~---~gr~~eI~rde 364 (533) +++++ ||||||||||||+|||||||+||||| |||+|+||+||++|||+|||||+|||+.+++ +||++|||||| T Consensus 323 ddrk~---msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~EItRDE 399 (523) T protein:vir:68 323 NQQHI---MSMTEDYWLQRRDGKAVTEVDTLPGADNTGNMEDVRWFRNALYMALRIPITRIPSDQGGIQFDAGTSITRDE 399 (523) T ss_pred cchhh---hhhHhhhcccccCCCcccceeeccccCCcChHHHHHHHHHHHHHHhCCcceeecCCCcceecccccchhHHH Confidence 99985 99999999999999999999999998 9999999999999999999999999987753 48999999999 Q ss_pred HHHHHHHHHHHHHHH----HHHhhhhhhccCCCccce-------eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhH- Q lcl|Aclame:pro 365 IKFNNTIKRIQGFFV----EELERMVRMNKEFADQDF-------RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRE- 432 (533) Q Consensus 365 ~kF~kfI~rLr~~F~----~~l~~qLilk~i~t~eew-------~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk- 432 (533) +||+|||+|||++|+ ++|++|||||||||++|| +|+|++||||+|+|++|||++|+++|++++||||| T Consensus 400 ikF~KFI~rLR~rFs~lf~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky 479 (523) T protein:vir:68 400 LSFGKFIRELQHKFEEIFLDPLKTNLILKGIITEDEWNDEINNIKIKFHRDSYFSELKDAEILERRINMLQMAEPFIGKY 479 (523) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhccc Confidence 999999999999987 679999999999999999 59999999999999999999999999999999987 Q ss_pred ---HHHHHHHhcCChhhh-HHHHHHhhhcccCCCCCcccccccc Q lcl|Aclame:pro 433 ---DWIYSNILQIPYDLK-PQEEVAEAAGGGGLFDTGGFGEETT 472 (533) Q Consensus 433 ---~~i~k~il~~tde~~-~q~~~i~~E~~~~~~~~~~~~~~~~ 472 (533) +||||+||+|||+++ +++++|++|.+++++++++.+++.= T Consensus 480 ~s~~yi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~p~~e~~~f 523 (523) T protein:vir:68 480 ISHRTAMKDILQMSDEEIEQEAKQIEEESKEARFQDPDQEQEDF 523 (523) T ss_pred chhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCchhhhcC Confidence 589999999999665 5689999999999999998775543 No 11 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=100.00 E-value=1.1e-211 Score=1177.14 Aligned_cols=455 Identities=22% Similarity=0.376 Sum_probs=412.0 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccC------ccccchHHHHHHHHHHhhcC Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYG------GIEFNRFFLYDMYDRMDYTD 77 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~yg------g~~~n~~~li~~YR~m~~~~ 77 (533) ||||+|+||+++++++++++.||++|+++|||.+|+.+++.+ .+++++|| |..+| ++||++||+|+ .| T Consensus 1 ~~~w~~~de~~~~~~~~~~~~S~~~p~~~DGa~~i~~~~~~~----~~~g~~~~~~~~~~~~~~~-~eLI~~YR~ma-~~ 74 (511) T protein:vir:56 1 MKFWTKEEEQDIQKIEKNPVRSFSAPDNVDGAKEIHTNLLAP----QLGHAIIPSDAQSEGTIPV-KELIKSYRALA-EY 74 (511) T ss_pred CCCccchhhhhhhhhccCCcccccCCCCCCCceEEecccccc----eecceeccccccccCccch-HHHHHHHHHHh-hc Confidence 999999999999999999999999999999999999976555 33455666 33445 59999999998 58 Q ss_pred hhHHHHHHHhhceeeecCCCCceeeeecccccccHHH-------HHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCC Q lcl|Aclame:pro 78 PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAI-------LSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGS 150 (533) Q Consensus 78 PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si-------~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~ 150 (533) |||++||++|||||||||.+++||+|+|+++++|++| |++++++|+|++++|++||+||||||+|||||+|+ T Consensus 75 pEvd~Av~eIvne~iv~d~~~~pV~l~ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fHkiid~- 153 (511) T protein:vir:56 75 HEVDDAIQEIVDEAIVYENDKEVVWLNLDNTDFSENIKAKINEEFDRVVSLLQMRKHGYKWFRKWYVDSRIYFHKILDK- 153 (511) T ss_pred cchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEecc- Confidence 9999999999999999999999999999999999997 44567899999999999999999999999999996 Q ss_pred CCCeeeeEEcCcceeeEEeeccCc-----------EEEEEecccceecc-----cC--CcccccCcccEEEEecCcccC- Q lcl|Aclame:pro 151 DGTIEKFQVVSPYIFSKRYNPETD-----------TWYYVITDVYRNVV-----SG--YFNEDIPEEDVIHFSHKIDTN- 211 (533) Q Consensus 151 k~gI~elr~ldP~~ik~v~d~~g~-----------~e~y~y~~~~~~~~-----~~--~~~~~~~~~dvi~~~~~~~~d- 211 (533) +.||++||+|||++|++||++.++ .+||+|+++..... .+ +...+++ .++|+|+|+++.| T Consensus 154 k~GI~eLr~lDPr~i~~vr~i~~~~~~~~~v~~~~~ey~~Y~~~~~~~~~~~~~~~~~~~~vkI~-~daI~y~hSGL~d~ 232 (511) T protein:vir:56 154 DNNIIELRPLNPMKMELVREIQKETIDGVEVVKGTLEYYVYKQSDYKMPSWMSATNRAQTSFRIP-KDAIVFAHSGLMRG 232 (511) T ss_pred ccceeehhhcCcccchhhhhhhcccccccccccceeeeeEecCCCcccCcccccccccccceeec-hhheeeecccceec Confidence 469999999999999999988775 48999998642221 11 2334455 5777787766654 Q ss_pred cc--cccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeec Q lcl|Aclame:pro 212 FF--PYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLG 289 (533) Q Consensus 212 ~~--~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d 289 (533) |. ++++||||+|+|||||||||||||||||+||||+|||||||||||||.||+|||++||++||||+|||++||+|++ T Consensus 233 ~~~~g~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~kNklVYDa~TGev~d 312 (511) T protein:vir:56 233 CADDPYIIGYLDRAIKPANQLKMLEDALVIYRLARAPERRVFYVDVGNLPTQKAQQYVNGIMQNVKNRVVYDTQTGQVKN 312 (511) T ss_pred cCCCCeeeccchhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceecc Confidence 43 4799999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccchhhhHHhhhhcccccCCCcceeeecCCC-CCChHHHHHHHHHHHHHhcCCCeeeccCCC---C--ccchhhhhHH Q lcl|Aclame:pro 290 IDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAEDVEYMLNRLISALKVPKAFIGYEG---D--VNAKNTLATQ 363 (533) Q Consensus 290 ~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~---~--~gr~~eI~rd 363 (533) ++++ ||||||||||||+|||||||+||||| |||+|+||+||++|||+|||||+|||++++ + +||++||||| T Consensus 313 drk~---msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kKLy~aLnVP~SRl~~e~q~~~f~~Gr~~EItRD 389 (511) T protein:vir:56 313 TTNA---MSMLEDYYLPRREGSKGTEVSTLPGGQSLGDIEDVLYFNRKLYKAMRIPTSRAASEDQTGGINFGQGAEITRD 389 (511) T ss_pred chhh---hhhHhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCcccccCCCCccccccccchhhhHH Confidence 9985 99999999999999999999999998 899999999999999999999999999874 3 4899999999 Q ss_pred HHHHHHHHHHHHHHHH----HHHhhhhhhccCCCccce-------eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhH Q lcl|Aclame:pro 364 DIKFNNTIKRIQGFFV----EELERMVRMNKEFADQDF-------RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRE 432 (533) Q Consensus 364 e~kF~kfI~rLr~~F~----~~l~~qLilk~i~t~eew-------~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk 432 (533) |+||+|||+|||++|+ ++|++|||||||||++|| +|+|++||||+|+|++|||++|+++|++++||||| T Consensus 390 EiKF~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGk 469 (511) T protein:vir:56 390 ELKFTKFVKRLQTKFETVITDPLKHQLIVNNIITEEEWDANHEKLYVVFNQDSYFEEAKELEILNSRMNAMRDIQDYAGK 469 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhcchhcc Confidence 9999999999999987 679999999999999999 59999999999999999999999999999999987 Q ss_pred ----HHHHHHHhcCChhhh-HHHHHHhhhcccCCCCCccccc Q lcl|Aclame:pro 433 ----DWIYSNILQIPYDLK-PQEEVAEAAGGGGLFDTGGFGE 469 (533) Q Consensus 433 ----~~i~k~il~~tde~~-~q~~~i~~E~~~~~~~~~~~~~ 469 (533) +||||+||+|||+++ +++++|++|.++++++.++.|= T Consensus 470 y~S~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~~e~~f 511 (511) T protein:vir:56 470 YYSHKYIQKNILRLSDDQITAMQSEIDEEETNPRFQQDDQGF 511 (511) T ss_pred ccchHHHHHHHhccCHHHHHHHHHHHHHhhcCCCCCCcccCC Confidence 589999999999665 5689999999999999988773 No 12 >protein:vir:103458 Length: 524 # NCBI annotation: portal vertex of the head # Family: family:all:1036 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803110;genbank:gi:116326390;genbank:GeneID:4405487 Probab=100.00 E-value=1.9e-211 Score=1175.84 Aligned_cols=467 Identities=18% Similarity=0.275 Sum_probs=421.4 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccc-cchhhcccccCc---cccchHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPF-ATAGYASRFYGG---IEFNRFFLYDMYDRMDYT 76 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~-~~~~~~~~~ygg---~~~n~~~li~~YR~m~~~ 76 (533) +-.|+||+|+||.+++++++.++.|+++|+++|||.++++..+... +-..+.+.+||| .++|+++||++||+|+ + T Consensus 6 L~~~~~w~~~de~~~~~~~~~~~~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~~~~~eLI~~YR~ma-~ 84 (524) T protein:vir:10 6 LSLFAPWAKMDERNFKDQEKEDLVSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGMKTTRELIDTYRNLM-N 84 (524) T ss_pred hhHhhccccCcchhhhhhhccCCccccCccCCCCceeeeecccccccccceeeeehhcccccccchHHHHHHHHHHHh-h Confidence 3339999999999999999999999999999999999977655442 223344556665 4689999999999997 6 Q ss_pred ChhHHHHHHHhhceeeecCCCCceeeeecccccccHHH-------HHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecC Q lcl|Aclame:pro 77 DPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAI-------LSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKG 149 (533) Q Consensus 77 ~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si-------~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~ 149 (533) |||||+||++|||||||||.+++||+|+|+++++|++| |++++++|+|++++|++||+||||||+|||||+|+ T Consensus 85 ~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~ 164 (524) T protein:vir:10 85 NYEVDNAVSEIVSDAIVYEDDTEVVALNLDKSKFSPKIKNMMLDEFNDVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDP 164 (524) T ss_pred ccchhhHHHHhhcceeEecCCCceEEEEecCcCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEeeC Confidence 99999999999999999999999999999999999997 44567799999999999999999999999999984 Q ss_pred --CCCCeeeeEEcCcceeeEEeeccCc-----------EEEEEeccccee---ccc---CCcccccCcccEEEEecCccc Q lcl|Aclame:pro 150 --SDGTIEKFQVVSPYIFSKRYNPETD-----------TWYYVITDVYRN---VVS---GYFNEDIPEEDVIHFSHKIDT 210 (533) Q Consensus 150 --~k~gI~elr~ldP~~ik~v~d~~g~-----------~e~y~y~~~~~~---~~~---~~~~~~~~~~dvi~~~~~~~~ 210 (533) +++||+|||+|||++|++||.+.++ ++||+|+++... ++. ++...+++ .++|+|+|+++. T Consensus 165 k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~y~~~g~~~~~~~~ikI~-~dAI~y~hSGL~ 243 (524) T protein:vir:10 165 KRPKEGIKELRRLDPRQVQYVREIITETEAGTKIVKGYKEYFIYDTAHESYACDGRMYEAGTKIKIP-KAAIVYAHSGLV 243 (524) T ss_pred CCccccceeeeeeCCccceeeeeeccCCCccchhhcchhhheeeccCccccccCccccCCCcceecc-hhheeeeeccce Confidence 6899999999999999999988765 489999986432 221 12334444 689999998877 Q ss_pred Cc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeec Q lcl|Aclame:pro 211 NF-FPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLG 289 (533) Q Consensus 211 d~-~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d 289 (533) || +++++||||+|+|||||||||||||||||+||||+|||||||||||||.||+|||++||++||||+|||++||+|++ T Consensus 244 d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~KNklvYDa~TGev~d 323 (524) T protein:vir:10 244 DCCGKNIIGYLHRAVKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPARKAAEHMQHVMNTMKNRVVYDASTGKIKN 323 (524) T ss_pred eCCCCceeccchhhhHHHHhhhHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeecc Confidence 76 46999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccchhhhHHhhhhcccccCCCcceeeecCCC-CCChHHHHHHHHHHHHHhcCCCeeeccCCC--C--ccchhhhhHHH Q lcl|Aclame:pro 290 IDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAEDVEYMLNRLISALKVPKAFIGYEG--D--VNAKNTLATQD 364 (533) Q Consensus 290 ~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~--~--~gr~~eI~rde 364 (533) ++++ ||||||||||||+|||||||+||||| |||+|+||+||++|||+|||||+|||+.++ + +||++|||||| T Consensus 324 drk~---msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItRDE 400 (524) T protein:vir:10 324 QQHN---MSMTEDYWLQRRDGKAVTEVDTLPGADNTGNMEDVRWFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITRDE 400 (524) T ss_pred chhh---hhhHhhhcccccCCCcccceeeccccCCcChHHHHHHHHHHHHHHhCCchhhcCCCCCccccccccchhhHHH Confidence 9985 99999999999999999999999998 999999999999999999999999997764 3 48999999999 Q ss_pred HHHHHHHHHHHHHHH----HHHhhhhhhccCCCccce-------eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhH- Q lcl|Aclame:pro 365 IKFNNTIKRIQGFFV----EELERMVRMNKEFADQDF-------RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRE- 432 (533) Q Consensus 365 ~kF~kfI~rLr~~F~----~~l~~qLilk~i~t~eew-------~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk- 432 (533) +||+|||+|||++|+ ++|++|||||||||++|| +|+|++||||+|+|++|||++|+++|++++||||| T Consensus 401 ikF~KFI~rLR~rFs~~f~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky 480 (524) T protein:vir:10 401 LTFAKFIRELQHKFEEVFLDPLKTNLLLKGIITEDEWNDEINNIKIEFHRDSYFTELKEAEILERRINMLTMAEPFIGKY 480 (524) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccc Confidence 999999999999987 679999999999999999 59999999999999999999999999999999987 Q ss_pred ---HHHHHHHhcCChhhh-HHHHHHhhhcccCCCCCcccccccc Q lcl|Aclame:pro 433 ---DWIYSNILQIPYDLK-PQEEVAEAAGGGGLFDTGGFGEETT 472 (533) Q Consensus 433 ---~~i~k~il~~tde~~-~q~~~i~~E~~~~~~~~~~~~~~~~ 472 (533) +||||+||+|||+++ +++++|++|.+++++++++.+++.= T Consensus 481 ~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~~~~~~~~f 524 (524) T protein:vir:10 481 ISHRTAMKDILQMTDEEIEQEAKQIEEESKEARFQDPDQEQEDF 524 (524) T ss_pred chhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCchhhhcC Confidence 589999999999665 5689999999999999998775543 No 13 >protein:vir:7208 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049782;genbank:gi:9632594;genbank:GeneID:1258582 Probab=100.00 E-value=2e-211 Score=1175.68 Aligned_cols=467 Identities=18% Similarity=0.275 Sum_probs=421.1 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccc-cchhhcccccCc---cccchHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPF-ATAGYASRFYGG---IEFNRFFLYDMYDRMDYT 76 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~-~~~~~~~~~ygg---~~~n~~~li~~YR~m~~~ 76 (533) +-.|+||+|+||.+++++++.++.|+++|+++|||.++++..+... +-..+.+.+||| .++|+++||++||+|+ + T Consensus 6 L~~~~~w~~~de~~~~~~~~~~~~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~~~~~eLI~~YR~ma-~ 84 (524) T protein:vir:72 6 LSLFAPWAKMDERNFKDQEKEDLVSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGMKTTRELIDTYRNLM-N 84 (524) T ss_pred hhHhhccccCcchhhhhhhccCCccccCccCCCCceeeeecccccccccceeeeehhcccccccchHHHHHHHHHHHh-h Confidence 3339999999999999999999999999999999999977655442 223344556665 4689999999999997 6 Q ss_pred ChhHHHHHHHhhceeeecCCCCceeeeecccccccHHH-------HHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecC Q lcl|Aclame:pro 77 DPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAI-------LSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKG 149 (533) Q Consensus 77 ~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si-------~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~ 149 (533) |||||+||++|||||||||.+++||+|+|+++++|++| |++++++|+|++++|++||+||||||+|||||+|+ T Consensus 85 ~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~ 164 (524) T protein:vir:72 85 NYEVDNAVSEIVSDAIVYEDDTEVVALNLDKSKFSPKIKNMMLDEFSDVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDP 164 (524) T ss_pred ccchhhHHHHhhcceeEecCCCceEEEEecCcCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEEeC Confidence 99999999999999999999999999999999999997 44567799999999999999999999999999974 Q ss_pred --CCCCeeeeEEcCcceeeEEeeccCc-----------EEEEEeccccee---ccc---CCcccccCcccEEEEecCccc Q lcl|Aclame:pro 150 --SDGTIEKFQVVSPYIFSKRYNPETD-----------TWYYVITDVYRN---VVS---GYFNEDIPEEDVIHFSHKIDT 210 (533) Q Consensus 150 --~k~gI~elr~ldP~~ik~v~d~~g~-----------~e~y~y~~~~~~---~~~---~~~~~~~~~~dvi~~~~~~~~ 210 (533) +++||+|||+|||++|++||.+.++ ++||+|+++... ++. ++...+++ .++|+|+|+++. T Consensus 165 k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~y~~~g~~~~~~~~ikI~-~dAI~y~hSGL~ 243 (524) T protein:vir:72 165 KRPKEGIKELRRLDPRQVQYVREIITETEAGTKIVKGYKEYFIYDTAHESYACDGRMYEAGTKIKIP-KAAVVYAHSGLV 243 (524) T ss_pred CCccccceeeeeeCCccceeeeeeccCCCccchhhcchhhheeeccCccccccCccccCCCcceecc-hhheeeeeccce Confidence 6899999999999999999988765 489999986432 221 12334444 689999998877 Q ss_pred Cc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeec Q lcl|Aclame:pro 211 NF-FPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLG 289 (533) Q Consensus 211 d~-~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d 289 (533) || +++++||||+|+|||||||||||||||||+||||+|||||||||||||.||+|||++||++||||+|||++||+|++ T Consensus 244 d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~KNklvYDa~TGev~d 323 (524) T protein:vir:72 244 DCCGKNIIGYLHRAVKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPARKAAEHMQHVMNTMKNRVVYDASTGKIKN 323 (524) T ss_pred eCCCCceeccchhhhHhHHhhhHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeecc Confidence 76 46999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccchhhhHHhhhhcccccCCCcceeeecCCC-CCChHHHHHHHHHHHHHhcCCCeeeccCCC--C--ccchhhhhHHH Q lcl|Aclame:pro 290 IDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAEDVEYMLNRLISALKVPKAFIGYEG--D--VNAKNTLATQD 364 (533) Q Consensus 290 ~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~--~--~gr~~eI~rde 364 (533) ++++ ||||||||||||+|||||||+||||| |||+|+||+||++|||+|||||+|||+.++ + +||++|||||| T Consensus 324 drk~---msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItRDE 400 (524) T protein:vir:72 324 QQHN---MSMTEDYWLQRRDGKAVTEVDTLPGADNTGNMEDIRWFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITRDE 400 (524) T ss_pred chhh---hhhHhhhcccccCCCcccceeeccccCCcChHHHHHHHHHHHHHHhCCchhhcCCCCCccccccccchhhHHH Confidence 9985 99999999999999999999999998 999999999999999999999999997764 3 48999999999 Q ss_pred HHHHHHHHHHHHHHH----HHHhhhhhhccCCCccce-------eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhH- Q lcl|Aclame:pro 365 IKFNNTIKRIQGFFV----EELERMVRMNKEFADQDF-------RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRE- 432 (533) Q Consensus 365 ~kF~kfI~rLr~~F~----~~l~~qLilk~i~t~eew-------~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk- 432 (533) +||+|||+|||++|+ ++|++|||||||||++|| +|+|++||||+|+|++|||++|+++|++++||||| T Consensus 401 ikF~KFI~rLR~rFs~~f~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky 480 (524) T protein:vir:72 401 LTFAKFIRELQHKFEEVFLDPLKTNLLLKGIITEDEWNDEINNIKIEFHRDSYFAELKEAEILERRINMLTMAEPFIGKY 480 (524) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccc Confidence 999999999999987 679999999999999999 59999999999999999999999999999999987 Q ss_pred ---HHHHHHHhcCChhhh-HHHHHHhhhcccCCCCCcccccccc Q lcl|Aclame:pro 433 ---DWIYSNILQIPYDLK-PQEEVAEAAGGGGLFDTGGFGEETT 472 (533) Q Consensus 433 ---~~i~k~il~~tde~~-~q~~~i~~E~~~~~~~~~~~~~~~~ 472 (533) +||||+||+|||+++ +++++|++|.+++++++++.+++.= T Consensus 481 ~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~~~~~~~~f 524 (524) T protein:vir:72 481 ISHRTAMKDILQMTDEEIEQEAKQIEEESKEARFQDPDQEQEDF 524 (524) T ss_pred chhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCchhhhcC Confidence 589999999999665 5689999999999999988775443 No 14 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=100.00 E-value=1.5e-210 Score=1170.86 Aligned_cols=479 Identities=19% Similarity=0.300 Sum_probs=417.4 Q ss_pred hhcccccccC---cccCCCCcccCCCCCccccchhhcccccC------ccccchHHHHHHHHHHhhcChhHHHHHHHhhc Q lcl|Aclame:pro 19 FLSPMYGMGA---PHGAGGSSMIPINMYHPFATAGYASRFYG------GIEFNRFFLYDMYDRMDYTDPLISTVLDIIAD 89 (533) Q Consensus 19 ~~~~~~s~~~---p~~~~gas~i~~~~~~~~~~~~~~~~~yg------g~~~n~~~li~~YR~m~~~~PEV~~AId~Ivn 89 (533) +-.+||||++ ++.++++|+++++..++ +..+.++++|| |.++|+++||++||+|+ .|||||+||++||| T Consensus 1 ~~~~lfg~~i~~~~~~~~~~s~~~~~~~dg-~~~~~~~~~~g~~~~~e~~~~~~~eLI~~YR~ma-~~pEvd~Av~eIVn 78 (537) T protein:vir:10 1 MAQQLFGFSLQRAKKVPKGPSFVQKDSLDG-SQPIVGGGYFGYSVDFDGTIRNDHELITRYREMV-LNPECDSAVDDVVN 78 (537) T ss_pred CccccccceeecccccccCCcccCCCcccc-cceeecccccccccccccccchHHHHHHHHHHHh-hccchhhHHHHhhc Confidence 6778999985 66799999999985555 55567778888 56789999999999998 58999999999999 Q ss_pred eeeecCCCCceeeeecccccccHHH-------HHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecC--CCCCeeeeEEc Q lcl|Aclame:pro 90 ECTIPNENGNIVDVVTKDIELAKAI-------LSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKG--SDGTIEKFQVV 160 (533) Q Consensus 90 eaiv~d~~~~~v~v~l~~~e~s~si-------~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~--~k~gI~elr~l 160 (533) ||||||.+++||+|+|+++++|++| |++++++|+|++++|++||+||||||+|||||+|+ +++||+|||+| T Consensus 79 eaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fhKiid~k~pk~GI~ELr~l 158 (537) T protein:vir:10 79 ETICGNFDDVPISIDLHNLKQSEKIKKLIRSEFDEILRLLDFDNRAYEIFRRWYVDGRLFFHKVIDPKKPRQGLVELRYV 158 (537) T ss_pred ceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEEeCCCccccceeeeee Confidence 9999999999999999999999997 45567899999999999999999999999999974 68999999999 Q ss_pred CcceeeEEeeccCc------------------EEEEEecccceecccCCcccccCcccEEEEecCcccCc-ccccchhHH Q lcl|Aclame:pro 161 SPYIFSKRYNPETD------------------TWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNF-FPYGRSYLE 221 (533) Q Consensus 161 dP~~ik~v~d~~g~------------------~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~-~~~g~s~L~ 221 (533) ||++|++||.+.++ .+||+|++++.+++ +++..++++ ++|+|+|+++.|| +++++|||| T Consensus 159 DPr~i~~vR~i~~~~~~~~~~~~~~~~v~~~~~eyf~ynp~g~~~~-~~~~vkI~~-dAI~y~hSGl~d~n~~~i~syLh 236 (537) T protein:vir:10 159 DPRKIRKVTEYEAKRPEALRTQDLNQQLTQQSASYFLYNPKGLKNS-TNQGMKIAP-DSIAYCHSGIQDLNKNMVLSHLH 236 (537) T ss_pred CCccceeeEeecccCCccceEEecceeeeecccceeeecccccccc-CCCceeccH-hheeeecccceeCCCCeeeeeeh Confidence 99999999986432 36999999887654 566778875 9999999888885 679999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHh Q lcl|Aclame:pro 222 SARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILK 301 (533) Q Consensus 222 ~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smle 301 (533) +|+|||||||||||||||||+||||+|||||||||||||.||+|||++||++||||+|||++||+|++++++ ||||| T Consensus 237 kAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~---msMlE 313 (537) T protein:vir:10 237 KAIKAVNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKF---MSMLE 313 (537) T ss_pred hhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchh---hhhhh Confidence 999999999999999999999999999999999999999999999999999999999999999999999985 99999 Q ss_pred hhhcccccCCCcceeeecCCC-CCChHHHHHHHHHHHHHhcCCCeeeccCCCCc--cchhhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 302 DYFIPRRGDRRAVEIDILQGS-KVDLAEDVEYMLNRLISALKVPKAFIGYEGDV--NAKNTLATQDIKFNNTIKRIQGFF 378 (533) Q Consensus 302 DywlprR~g~~gtEi~TLpG~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~--gr~~eI~rde~kF~kfI~rLr~~F 378 (533) |||||||+|||||||+||||| |||+|+||+||++|||+|||||+|||+.+++| ||++||||||+||+|||+|||++| T Consensus 314 DyWLPRReGgrgTEItTLpGgqnlgem~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rF 393 (537) T protein:vir:10 314 DFWLPRREGGRGTEISTLPGGQNLGELEDVKYFQKKLYKALNVPSSRLETETTFNIGRAAEITRDEVKFQKFIARLRKRF 393 (537) T ss_pred hhcccccCCCcccceeeccccCCcChHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHHHHHHHHH Confidence 999999999999999999998 89999999999999999999999999999885 899999999999999999999998 Q ss_pred H----HHHhhhhhhccCCCccce-------eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhH----HHHHHHHhcCC Q lcl|Aclame:pro 379 V----EELERMVRMNKEFADQDF-------RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRE----DWIYSNILQIP 443 (533) Q Consensus 379 ~----~~l~~qLilk~i~t~eew-------~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk----~~i~k~il~~t 443 (533) + ++|++|||||||||++|| +|+|++||||+|+|++|||++|+++|++++||||| +||||+||+|| T Consensus 394 s~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~dyi~k~ILr~t 473 (537) T protein:vir:10 394 SELFVDLLKTQLILKGICSIEEWEEMKEHIQFDFIADNYFTELKEIEIRNERMNEVAQMDPYVGKYFSANYIRTKVLKQT 473 (537) T ss_pred HHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccC Confidence 7 679999999999999999 59999999999999999999999999999999987 58999999999 Q ss_pred hhhh-HHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCC Q lcl|Aclame:pro 444 YDLK-PQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGG 522 (533) Q Consensus 444 de~~-~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 522 (533) |+++ +++++|++|.+++++++|+..++...+.-++...+| .++.|+ ..|+ T Consensus 474 DeeI~~~~k~I~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~---------------------------~~~~ 524 (537) T protein:vir:10 474 ESEIKEIDKEIKQEIADGVIMDPQAMQAMEMGIGDEEPVPE--GGEEPQ---------------------------TDPN 524 (537) T ss_pred HHHHHHHHHHHHHHhhCCCCCCcccccccccCCCCcccCCC--CCCCcc---------------------------cCCc Confidence 9665 568999999999999988765333221111111110 111111 1222 Q ss_pred cccCCCCCCCC Q lcl|Aclame:pro 523 GEEELPFPEEE 533 (533) Q Consensus 523 ~~~~~~~~~~~ 533 (533) +.++|.+|+-- T Consensus 525 ~~~~~~~~~~~ 535 (537) T protein:vir:10 525 SAVSPADQKRG 535 (537) T ss_pred cCCCCCCccCC Confidence 33344444333 No 15 >protein:vir:103177 Length: 533 # NCBI annotation: gp131 # Family: family:all:1036 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717798;genbank:gi:113200635;genbank:GeneID:4239186 Probab=100.00 E-value=7.7e-210 Score=1167.03 Aligned_cols=470 Identities=21% Similarity=0.362 Sum_probs=411.8 Q ss_pred hcccccccCcc---cCCCCcccCCCCCccccchhhcccccC------ccccchHHHHHHHHHHhhcChhHHHHHHHhhce Q lcl|Aclame:pro 20 LSPMYGMGAPH---GAGGSSMIPINMYHPFATAGYASRFYG------GIEFNRFFLYDMYDRMDYTDPLISTVLDIIADE 90 (533) Q Consensus 20 ~~~~~s~~~p~---~~~gas~i~~~~~~~~~~~~~~~~~yg------g~~~n~~~li~~YR~m~~~~PEV~~AId~Ivne 90 (533) |++||||++.+ .+.+.|+++++.. .++..+.++++|| |.++|+++||++||+|+ .|||||+||++|||| T Consensus 1 m~~lfg~~i~~~~~~~~~~s~~~~~~~-dg~~~i~~~~~~~~~~~~e~~~~~~~eLI~~YR~ma-~~pEvd~Av~eIVne 78 (533) T protein:vir:10 1 MSQLFGFSLERAKKAPKGPSFVQKDNL-DGSQPVSGGGYYGYTVDFDGQVRNEYQLISRYREMV-LQPECDSAVDDIVNE 78 (533) T ss_pred CccccccccccccccccCCCCCCCCcc-cccceeecccccceeeecccccchHHHHHHHHHHHh-hccchhhHHHHhhcc Confidence 99999999755 4666688888743 4455677777777 56789999999999998 589999999999999 Q ss_pred eeecCCCCceeeeecccccccHHH-------HHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeec--CCCCCeeeeEEcC Q lcl|Aclame:pro 91 CTIPNENGNIVDVVTKDIELAKAI-------LSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEK--GSDGTIEKFQVVS 161 (533) Q Consensus 91 aiv~d~~~~~v~v~l~~~e~s~si-------~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid--~~k~gI~elr~ld 161 (533) |||||.+++||+|+|+++++|++| |++++++|+|++++|++||+||||||+|||||+| ++++||+|||+|| T Consensus 79 aiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fHkiid~~~pk~GI~ELr~lD 158 (533) T protein:vir:10 79 TICGNFDDVPVSVELSNLKVSDKIKKLIREEFGEILRLLDFENRSYEIFRRWYVDGRLFYHKVIDPDNPQGGLIELRYID 158 (533) T ss_pred eeeecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEecCCCccccceeeeecc Confidence 999999999999999999999997 4456789999999999999999999999999998 5789999999999 Q ss_pred cceeeEEeeccCc------------------EEEEEecccceecccCCcccccCcccEEEEecCcccCc-ccccchhHHH Q lcl|Aclame:pro 162 PYIFSKRYNPETD------------------TWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNF-FPYGRSYLES 222 (533) Q Consensus 162 P~~ik~v~d~~g~------------------~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~-~~~g~s~L~~ 222 (533) |++|++||.+.++ .+||+||+++.+++ ++...++++ ++|+|+|+++.|| +++++||||+ T Consensus 159 Pr~i~~vr~i~~~~~~~~~~~~~~~~v~~~~~eyf~Ynp~g~~~~-~~~~vkI~~-dAI~y~hSGl~d~~~~~i~syLhk 236 (533) T protein:vir:10 159 PRKIRKINETEQKRPEQLRGLPLNQQLSPKSAEYFLYDPKGLKNS-TTQGLKIAP-DSICYVHSGIMDLNKNMTLSHLHK 236 (533) T ss_pred ccceeeeeeeeccCCCccceeecchhhhccceeeeeecccccccc-CCCceecch-hheeeeeccceeCCCCceeccchH Confidence 9999999977432 48999999877664 355677775 9999999888886 5689999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhh Q lcl|Aclame:pro 223 ARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKD 302 (533) Q Consensus 223 Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleD 302 (533) |+|||||||||||||||||+||||+|||||||||||||.||+|||++||++||||+|||++||+|++++++ |||||| T Consensus 237 AiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~---msMlED 313 (533) T protein:vir:10 237 AIKAVNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKF---MSMLED 313 (533) T ss_pred hHHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchh---hhhHhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999985 999999 Q ss_pred hhcccccCCCcceeeecCCC-CCChHHHHHHHHHHHHHhcCCCeeeccCCCCc--cchhhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 303 YFIPRRGDRRAVEIDILQGS-KVDLAEDVEYMLNRLISALKVPKAFIGYEGDV--NAKNTLATQDIKFNNTIKRIQGFFV 379 (533) Q Consensus 303 ywlprR~g~~gtEi~TLpG~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~--gr~~eI~rde~kF~kfI~rLr~~F~ 379 (533) ||||||+|||||||+||||| |||+|+||+||++|||+|||||+|||+.+++| ||++||||||+||+|||+|||++|+ T Consensus 314 yWLPRReGgrgTEItTLpGgqnLgem~DV~YF~kKLY~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs 393 (533) T protein:vir:10 314 FWLPRREGGRGTEITTLPGGQNLGELEDVKYFQKKLYKSLNVPGSRLETETTFNVGRAAEITRDEVKFQKFVARLRKRFS 393 (533) T ss_pred hcccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHH Confidence 99999999999999999998 89999999999999999999999999999885 8999999999999999999999987 Q ss_pred ----HHHhhhhhhccCCCccce-------eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhH----HHHHHHHhcCCh Q lcl|Aclame:pro 380 ----EELERMVRMNKEFADQDF-------RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRE----DWIYSNILQIPY 444 (533) Q Consensus 380 ----~~l~~qLilk~i~t~eew-------~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk----~~i~k~il~~td 444 (533) ++|++|||||||||++|| +|+|++||||+|+|++|||++|+++|++++||||| +||||+||+||| T Consensus 394 ~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tD 473 (533) T protein:vir:10 394 ELFTDLLKTQLVLKGVISIEEWDQMKEHIQYDYIADNYFAELKEIEIRNERMNQVATMDPFVGKYFSVEYMRRQVLKQTD 473 (533) T ss_pred HHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCH Confidence 679999999999999999 59999999999999999999999999999999987 589999999999 Q ss_pred hhh-HHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCc Q lcl|Aclame:pro 445 DLK-PQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGG 523 (533) Q Consensus 445 e~~-~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 523 (533) +++ +++++|++|.+++++++|+.+.+ |. +.+..| +.||. ++. T Consensus 474 eei~~~~kqI~~E~k~~~~~~p~~~~~--~~----------~~~~~~-----------~~~~~--------------~~~ 516 (533) T protein:vir:10 474 VEMKEIDKQIESEMESGIIADPAAEMD--PA----------MAAGDP-----------DAGGA--------------PAE 516 (533) T ss_pred HHHHHHHHHHHHHHhCCCCCCCcchhh--HH----------hcCCCC-----------CcCCc--------------ccc Confidence 665 56899999999999998875321 11 111111 11111 111 Q ss_pred ccCCCC--CCCC Q lcl|Aclame:pro 524 EEELPF--PEEE 533 (533) Q Consensus 524 ~~~~~~--~~~~ 533 (533) +.+|++ |++| T Consensus 517 ~~~~~~~~~~~~ 528 (533) T protein:vir:10 517 EVAPEGPDPSDE 528 (533) T ss_pred cCCCCCCCcchh Confidence 222222 2333 No 16 >protein:vir:104892 Length: 558 # NCBI annotation: T4-like capsid assembly protein # Family: family:all:1036 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214363;genbank:gi:61806003;genbank:GeneID:3294412 Probab=100.00 E-value=8e-210 Score=1166.92 Aligned_cols=493 Identities=19% Similarity=0.317 Sum_probs=404.5 Q ss_pred CCC-cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccC--ccccchHHHHHHHHHHhhcC Q lcl|Aclame:pro 1 MPS-LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYG--GIEFNRFFLYDMYDRMDYTD 77 (533) Q Consensus 1 ~~~-~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~yg--g~~~n~~~li~~YR~m~~~~ 77 (533) |+- |.||-+.. +.+..+..|+++|+++||+..++.+ ...+.||+ +.++|+++||++||+|+ +| T Consensus 1 m~~lfgf~~~~~-----~~~~~~~~s~~~p~~ddg~~~~~~~--------g~~~~~~~~~~~~~~~~eLI~~YR~ma-~~ 66 (558) T protein:vir:10 1 MAKLFGFSIEET-----QKKSTSIISPVPKNNEDGVDNFISS--------GFYGQYVDIEGAYRSEYDLIRRYREMA-LH 66 (558) T ss_pred Ccchhcchhhhh-----hhhccCCccccCCCccccccceecc--------ceeeeeecccchhhhHHHHHHHHHHHh-hc Confidence 544 55555432 2335555566666666665444322 22344555 77899999999999997 69 Q ss_pred hhHHHHHHHhhceeeecCCCCceeeeecccccccHHH-------HHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeec-- Q lcl|Aclame:pro 78 PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAI-------LSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEK-- 148 (533) Q Consensus 78 PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si-------~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid-- 148 (533) ||||+||++|||||||||.+++||+|+|+++++|+++ |++++++|+|++++|++||+||||||+|||||+| T Consensus 67 pEvd~Av~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRiyfHKiid~k 146 (558) T protein:vir:10 67 PEADGAIEDVVNEAIVSDLYDSPVEVELSNLNASNTLKKKIREEFRYIKEMMDFDKKSHEIFRNWYVDGRVFYLKVIDTK 146 (558) T ss_pred cchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEEeCC Confidence 9999999999999999999999999999999999988 4456789999999999999999999999999997 Q ss_pred CCCCCeeeeEEcCcceeeEEeeccCc----------------------EEEEEeccccee--cccC----CcccccCccc Q lcl|Aclame:pro 149 GSDGTIEKFQVVSPYIFSKRYNPETD----------------------TWYYVITDVYRN--VVSG----YFNEDIPEED 200 (533) Q Consensus 149 ~~k~gI~elr~ldP~~ik~v~d~~g~----------------------~e~y~y~~~~~~--~~~~----~~~~~~~~~d 200 (533) ++++||+|||+|||++|++||++.++ .+||+|+++..+ ++++ +...++ +.+ T Consensus 147 ~pk~GI~ELr~lDPr~i~~Vr~i~~~~~~~~~~~~~~~~~~~~~~~~~~eyy~Y~~~~~~~~~~~~~~~~~~~vkI-~~d 225 (558) T protein:vir:10 147 NPQEGIQDLRYIDPLKIKFIRQEKRKPGNQDPAIRVRSEQDVVPNPEFEEFYIYTPKVQHPTGMVGQMGGKNSIKI-AKD 225 (558) T ss_pred CccccceeeeeeCcccceeeeeeccccccccceeeeecccceeeccceeEeeeecCCcccccccceeecCCCceee-chh Confidence 46899999999999999999987543 389999986432 2222 222333 579 Q ss_pred EEEEecCcccC-cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhcee Q lcl|Aclame:pro 201 VIHFSHKIDTN-FFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYW 279 (533) Q Consensus 201 vi~~~~~~~~d-~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~v 279 (533) +|+|+|+++.| |+++++||||+|||||||||||||||||||+||||+|||||||||||||.||+|||++||++||||+| T Consensus 226 AI~y~hSGL~d~~~~~i~syLhkAIKp~NQLkmlEDAlVIYRitRAPERRvFYIDVGnLPk~KAeqYlr~iM~k~KNklV 305 (558) T protein:vir:10 226 SITMCTSGLVDRNKNRVLSYLHKAIKALNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKVKAEQYLKEVMSRYRNKLV 305 (558) T ss_pred heeeecccceecCCCeeeecchHhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEE Confidence 99999988888 56799999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC-CCChHHHHHHHHHHHHHhcCCCeeeccCCCCc--cc Q lcl|Aclame:pro 280 VRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAEDVEYMLNRLISALKVPKAFIGYEGDV--NA 356 (533) Q Consensus 280 yd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~--gr 356 (533) ||++||+|++++++ ||||||||||||+|||||||+||||| |||+|+||+||++|||+|||||+|||+.+++| || T Consensus 306 YDa~TGev~ddrk~---msMlEDyWLpRReGgrgTEItTLpGgqnLgem~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr 382 (558) T protein:vir:10 306 YDANTGEVRDDRKF---MSMMEDFWLPRREGGRGTEITTLPGGQNLGELSDVDYFQKKLYRALGVPESRIAAEGGFNLGR 382 (558) T ss_pred EeccCceecccchh---hhhHhhhcccccCCCCccceeeccccCCcchHHHHHHHHHHHHHHhCCCccccCCCCcccccc Confidence 99999999999985 99999999999999999999999998 99999999999999999999999999999876 89 Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH----HHHhhhhhhccCCCccce-------eEEecCCcHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 357 KNTLATQDIKFNNTIKRIQGFFV----EELERMVRMNKEFADQDF-------RLVMNRSNSIVEGERFAVIEQRIGIAER 425 (533) Q Consensus 357 ~~eI~rde~kF~kfI~rLr~~F~----~~l~~qLilk~i~t~eew-------~~~f~~dn~f~E~ke~ei~~~R~~~~~~ 425 (533) ++||||||+||+|||+|||++|+ ++|++|||||||||++|| +|+|++||||+|+|++|||++|+++|++ T Consensus 383 ~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~ 462 (558) T protein:vir:10 383 SSEILRDELKFAKFVGRLRKRFAAMFNDMLKTQLVLKNIVTPEDWKTMEDHIQYDFLYDNQFAELKESELMEGRLGMLAT 462 (558) T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999987 679999999999999999 5999999999999999999999999999 Q ss_pred hhhhhhH----HHHHHHHhcCChhhh-HHHHHHhhhcccCCCCCcccccccc----hhhhcCccCCcccccCCCcccccC Q lcl|Aclame:pro 426 LKGWVRE----DWIYSNILQIPYDLK-PQEEVAEAAGGGGLFDTGGFGEETT----PADFLGERGSPIESPRGRTEFDFG 496 (533) Q Consensus 426 ~~pyvgk----~~i~k~il~~tde~~-~q~~~i~~E~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 496 (533) ++||||| +||||+||+|||+++ +++++|++|.++++|++|+..+.+. |...++.+..+...|+ T Consensus 463 ~dpyvGky~S~dyi~k~ILr~tDeeI~~~~kqI~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 534 (558) T protein:vir:10 463 IEPYIGKYYSTEYVRKRVLRQTDMEIEEIDTQIEDEIQKGIIPDPSQIDPITGEPLPQEGDPAMEGMGEQPV-------- 534 (558) T ss_pred hhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCCccccChhhccccCccCCchhccCCCCCc-------- Confidence 9999987 589999999999665 5689999999999999877542211 1111222222211221 Q ss_pred CCCCccCCCccCcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 497 TEGGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) +.++.+++++ ++++-.-..-+.| T Consensus 535 ---------~~~~~~~~~~-----~~~~~~~~~~~~~ 557 (558) T protein:vir:10 535 ---------DPDLEAQAQA-----VDAQYSKDTKKAE 557 (558) T ss_pred ---------ccccccchhh-----hhhhhhhhhhhhc Confidence 1222232222 1111000111111 No 17 >protein:vir:106999 Length: 564 # NCBI annotation: portal vertex protein gp20 # Family: family:all:1036 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195138;genbank:gi:58532915;interpro:IPR010823;uniprot:Q5GQN4;genbank:GeneID:3260496 Probab=100.00 E-value=1.1e-209 Score=1166.14 Aligned_cols=488 Identities=22% Similarity=0.318 Sum_probs=413.4 Q ss_pred hcccccccCcc--cCCCCcccCCCCCccccchhhcccccC-------c-cccchHHHHHHHHHHhhcChhHHHHHHHhhc Q lcl|Aclame:pro 20 LSPMYGMGAPH--GAGGSSMIPINMYHPFATAGYASRFYG-------G-IEFNRFFLYDMYDRMDYTDPLISTVLDIIAD 89 (533) Q Consensus 20 ~~~~~s~~~p~--~~~gas~i~~~~~~~~~~~~~~~~~yg-------g-~~~n~~~li~~YR~m~~~~PEV~~AId~Ivn 89 (533) |++||||++.+ .+.+.|+||++..++..+ .+++||| | .++|+++||++||+|+ +|||||+||++||| T Consensus 1 m~~lfgf~i~~~~~~~~~S~vpp~~~~~~~~--i~~g~~g~~v~~~g~~~~~n~~eLI~~YR~ma-~~pEVd~Av~eIVn 77 (564) T protein:vir:10 1 MSQLFGFLINEKEGQKGQSPVPPNDEASVST--VAGGYFGTYVDTSGGQNSRNEYELIRRYRDMS-LHPEVDSAIDEIVN 77 (564) T ss_pred CcchhcceeeeeccCCCCCcccCCcCCChhh--hhccccceeeecccccchhhHHHHHHHHHHHh-hccchhhHHHHhhc Confidence 99999999744 578889999997666544 3567766 2 4689999999999997 69999999999999 Q ss_pred eeeecCCCCceeeeecccccccHHH-------HHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeec--CCCCCeeeeEEc Q lcl|Aclame:pro 90 ECTIPNENGNIVDVVTKDIELAKAI-------LSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEK--GSDGTIEKFQVV 160 (533) Q Consensus 90 eaiv~d~~~~~v~v~l~~~e~s~si-------~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid--~~k~gI~elr~l 160 (533) ||||++.+++||+|+|+++++|+++ |++++++|+|++++|++||+||||||+|||||+| ++++||++||+| T Consensus 78 eaIv~d~~~~pV~vdL~~~~~s~siK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fHkiid~~~pk~GI~eLr~l 157 (564) T protein:vir:10 78 EFVVNDGDDKPVEVDLQNLEIGSGVKKKIRDEFNRILRMMNFNVNAHEIIRNWYVDGRSHYHKVIDLDNPKKGILELRYI 157 (564) T ss_pred ceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEeeCCChhhhhhhhhhh Confidence 9999999999999999999999996 4456789999999999999999999999999997 578899999999 Q ss_pred CcceeeEEeeccCc---------------------EEEEEecccceecc----------cCCcccccCcccEEEEecCcc Q lcl|Aclame:pro 161 SPYIFSKRYNPETD---------------------TWYYVITDVYRNVV----------SGYFNEDIPEEDVIHFSHKID 209 (533) Q Consensus 161 dP~~ik~v~d~~g~---------------------~e~y~y~~~~~~~~----------~~~~~~~~~~~dvi~~~~~~~ 209 (533) ||++|++||++.++ .+||+|+++...+. +.++..+++ .++|+|+|+++ T Consensus 158 DPr~i~~vr~i~~~~~~~~~~v~k~~~~~~~y~~~~Eyy~Ynp~~~~g~~~~~~~~~~~~~~~~ikI~-~daI~y~hSGL 236 (564) T protein:vir:10 158 DSLKIRKVRQKLKDVDPNRKEIEKGTALQYDYGDFIEYYIYNPKGFAGNIPMVTGSMDWSNQEGIKIA-SDAIAQSTSGL 236 (564) T ss_pred cccceeeeeeeccccccccceeeeeeeeeccccccccceeeccccccCcccccccccccccccceeec-hhhcceecccc Confidence 99999999977764 27999997643221 122334555 58888888887 Q ss_pred cCc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeee Q lcl|Aclame:pro 210 TNF-FPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFL 288 (533) Q Consensus 210 ~d~-~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~ 288 (533) .|| +++++||||+|||||||||||||||||||+||||+|||||||||||||.||+|||++||++||||+|||++||+|+ T Consensus 237 ~d~~~~~i~gyLhkAIKp~NQLkmlEDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGevr 316 (564) T protein:vir:10 237 MDLNKKMTLSFLHKAIKSLNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKVKAEQYLRDVMSRYRNKLVYDGQTGEIR 316 (564) T ss_pred eeCCCCceeccchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceec Confidence 775 6799999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccchhhhHHhhhhcccccCCCcceeeecCCC-CCChHHHHHHHHHHHHHhcCCCeeeccCCC-C--ccchhhhhHHH Q lcl|Aclame:pro 289 GIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAEDVEYMLNRLISALKVPKAFIGYEG-D--VNAKNTLATQD 364 (533) Q Consensus 289 d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~-~--~gr~~eI~rde 364 (533) +++++ ||||||||||||+|||||||+||||| |||+|+||+||++|||+|||||+|||+.++ + +||++|||||| T Consensus 317 ddrk~---msMlEDyWLPRReGgrgTEItTLpGgqnLgem~DV~YF~kKLY~aLnVP~SRl~~e~~~f~~Gr~~EItRDE 393 (564) T protein:vir:10 317 DDKKH---MSMLEDFWLPRREGGRGTEITTLPGGQNLGELKDVEYFKKKLYNSLNLPPSRLTDDNKAFNLGKSTEILRDE 393 (564) T ss_pred ccchh---hhhHhhhcccccCCCcccceeeccccCCcchHHHHHHHHHHHHHHhCCCcccccCCCceeecccccchhHHH Confidence 99985 99999999999999999999999998 999999999999999999999999999985 3 49999999999 Q ss_pred HHHHHHHHHHHHHHH----HHHhhhhhhccCCCccce-------eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhH- Q lcl|Aclame:pro 365 IKFNNTIKRIQGFFV----EELERMVRMNKEFADQDF-------RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRE- 432 (533) Q Consensus 365 ~kF~kfI~rLr~~F~----~~l~~qLilk~i~t~eew-------~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk- 432 (533) +||+|||.|||++|+ ++|++|||||||||++|| +|+|++||||+|+|++|||++|+++|++++||||| T Consensus 394 iKF~KFI~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky 473 (564) T protein:vir:10 394 LKFTKFIGRLRKRFAQLFHDILKTQLILKGIITPEDWDDMEEHIQYDFLFDNHFNELKEQEMQLQRVNLATQMDPFVGKY 473 (564) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccc Confidence 999999999999987 679999999999999999 59999999999999999999999999999999987 Q ss_pred ---HHHHHHHhcCChhhh-HHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccC Q lcl|Aclame:pro 433 ---DWIYSNILQIPYDLK-PQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELN 508 (533) Q Consensus 433 ---~~i~k~il~~tde~~-~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (533) +||||+||+|||+++ +++++|++|.+++++++|...++..++...|.+..|. +.+.. + T Consensus 474 ~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~P~e~~~~~~~~~~~~~~~p~---------~~~~~---------~ 535 (564) T protein:vir:10 474 FSTEYIRRKILMQTENEFKEIDKQMKSDIESGLAIDPIQVNMLDDMEKQNQAFAPE---------LQAAQ---------D 535 (564) T ss_pred cchHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCchhhhcCCCccCCCCcCCcc---------hhhhc---------c Confidence 589999999999665 5689999999999999887554433332222222221 11110 1 Q ss_pred cCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 509 LGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 509 ~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) .+++.++++..+++.++||.+..- T Consensus 536 -~~~~~~~~~~~~~a~~~~~~~~~~ 559 (564) T protein:vir:10 536 -DLAAEREIKKLNSAPKPPPSQQSK 559 (564) T ss_pred -ccccccChhhhccCCCCCCCCCCc Confidence 123333333333333333332221 No 18 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.80 E-value=1.8e-19 Score=123.29 Aligned_cols=405 Identities=11% Similarity=0.074 Sum_probs=214.4 Q ss_pred hcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCc Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGN 99 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~ 99 (533) |..+.|+.-+-..-|+ .- -.+.++ +|-+...+..++...|| .|+.++.+|+.++.+|+-.... T Consensus 1 ~~~~D~~~~~~~~~g~-~~--------~~~~~~--~~~~~~~~~~~l~a~Y~----~~~l~~~~vd~~a~d~~r~~~~-- 63 (437) T protein:vir:52 1 MKFFDGIKSLALKLGS-KQ--------EQTYYS--PSLSLTDDLVQLEALWR----DNWIANKVCIKRPEDMVRNWRE-- 63 (437) T ss_pred CchhhhhHhHHhcCCC-cc--------ccceee--cCccccccHHHHHHHHH----hCchhhHHhhcchHHhhcCCce-- Confidence 5555555332222221 00 011111 22223345556666555 5899999999999999843322 Q ss_pred eeeeecccccccH-HHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecC--------CCCCeeeeEEcCcceeeEEee Q lcl|Aclame:pro 100 IVDVVTKDIELAK-AILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKG--------SDGTIEKFQVVSPYIFSKRYN 170 (533) Q Consensus 100 ~v~v~l~~~e~s~-si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~--------~k~gI~elr~ldP~~ik~v~d 170 (533) |..++.+-.+ ..+....+.|++..++.+.+|.--++|+.+...++|. +++.++.++.+||.+|.+... T Consensus 64 ---i~~~d~~~~~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~~~~~~~~~v~~~~~v~~~~~ 140 (437) T protein:vir:52 64 ---IYSNDLNSKQLDLFTKFERSLKLRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKPTERLKRLIILPKWKISPTGT 140 (437) T ss_pred ---EecCCCCHHHHHHHHHHHHhhcHHHHHHHHHHhcccccceEEEEEecCCCcccccccCCceeEEEEechhhcccccc Confidence 2223222111 1245566778898888888887778999887777763 246788999999999976543 Q ss_pred cc--------CcEEEEEecccceecccCCcccccCcccEEEEecCc--ccCcccccchhHHHHHHHHHHHHHHHH--HHH Q lcl|Aclame:pro 171 PE--------TDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKI--DTNFFPYGRSYLESARAIWNQLRLMED--ALM 238 (533) Q Consensus 171 ~~--------g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~--~~d~~~~g~s~L~~Aik~~NqLrm~Ed--alV 238 (533) .. |.-.+|.++. +..+..+-+.+++||...- .....-+|+|.|+++...+..+...+. +.+ T Consensus 141 ~~~dp~s~~fg~p~~y~v~~-------~~~~~~iH~SRii~~~~~~~~~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l 213 (437) T protein:vir:52 141 KDDDVLSPNFGRYSEYSILG-------GSQSITVHHSRLIILNANDAPLSDNDIWGVSDLEKIIDVLKRFDSASVNVGDL 213 (437) T ss_pred ccccccccccCcceEEEEec-------CCcceeEccceeEEecCccCCCccccccCCchHHHHHHHHHHHHHHHHHHHHH Confidence 32 3334554422 2345678889999997422 222234799999997666655554444 555 Q ss_pred HHHHhccccceeeecCCC--CCch--hhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcc Q lcl|Aclame:pro 239 LYRVVRSVDRRVFYVDVG--NVPP--DKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAV 314 (533) Q Consensus 239 IyRi~RAPeRr~fyidvG--nlp~--~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gt 314 (533) +++-. -.++.++.- .+.. ..+..-..+.++++| +..|-+.-+. +- T Consensus 214 ~~~~~----~~v~k~~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~---------------------~~ 262 (437) T protein:vir:52 214 IFESK----IDIFKIAGLSDKIAAGMENEVASVISAVQEIK------SATNSLLLDA---------------------EN 262 (437) T ss_pred HHHcC----CCceecchHHHHhcCCcHHHHHHHHHHHHHhc------CCCceEEEcC---------------------Cc Confidence 66532 334545420 1111 111122222333333 2222221111 12 Q ss_pred eeeecCCCCCChHHH-HHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHH-HHHHHhh--hhh-hc Q lcl|Aclame:pro 315 EIDILQGSKVDLAED-VEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGF-FVEELER--MVR-MN 389 (533) Q Consensus 315 Ei~TLpG~nlg~i~D-v~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~-F~~~l~~--qLi-lk 389 (533) +++++. -+++-++| +..|+..+-.+.+||+++|-..+..|. ++-.-|...|+.+|+++|.. +..+|++ ++| +. T Consensus 263 ~~e~~~-~~~sgl~~~l~~~~~~iaaa~~iP~t~L~G~s~~Gl-asge~D~~~yyd~i~~~Qe~~l~p~le~l~~~i~~~ 340 (437) T protein:vir:52 263 EYDRKE-LTFTGLKDLLTEFRNAVAGAADMPVTILFGQSVSGL-ASGDEDIQNYHEAIRRLQETRLRPIFEIIDPLICNE 340 (437) T ss_pred ceEEEe-cCcCCHHHHHHHHHHHHHHHhcCchhhhcCcCcccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 333331 13444444 789999999999999999977766666 44455667799999999965 4454443 222 22 Q ss_pred --cCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCccc Q lcl|Aclame:pro 390 --KEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGF 467 (533) Q Consensus 390 --~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~ 467 (533) |-+ +++|+|.|..=.--++...+|+...+.+++..+-. ..-++.++..+. +.+ .+.++.-.. T Consensus 341 ~~g~~-~~~~~~~f~pL~~~s~kekae~~~~~a~a~~~~~~----------~g~i~~~e~r~~--L~~---~g~~~~i~~ 404 (437) T protein:vir:52 341 LFGGL-PADWWFEFVPLTTVKQEQQINMLNTFATAANTLIQ----------NGVLNEYQIANE--LRE---SGLFANISA 404 (437) T ss_pred hcCCC-CCcceEEeCCcCCcCHHHHHHHHHHHHHHHHHHHh----------cCCCCHHHHHHH--HHh---cCCCCCCCc Confidence 222 46899999977777888889998888888776311 122333332111 111 133332211 Q ss_pred ccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccC Q lcl|Aclame:pro 468 GEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFE 514 (533) Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (533) +.............+ .+.|. .+.++ +++ .++++ T Consensus 405 ~~~~~~~~~~~~~~~-~~~~~----~~~~~-----~~~----~~~~~ 437 (437) T protein:vir:52 405 EHIEELKNADEFAGN-FEEPE----KMEGA-----QVQ----NSEDQ 437 (437) T ss_pred cccccccCCCCCCCc-cCCCC----CCCCC-----CCC----CCCCC Confidence 110000000000011 11111 11111 111 13333 No 19 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.78 E-value=2.8e-17 Score=111.32 Aligned_cols=453 Identities=12% Similarity=0.053 Sum_probs=218.2 Q ss_pred Ccchhhh------------------------hhhHHHHHHhhcccccccCcc-c------CCCC--cccCCCCCccccc- Q lcl|Aclame:pro 3 SLEKYKK------------------------LNEAVNFTNFLSPMYGMGAPH-G------AGGS--SMIPINMYHPFAT- 48 (533) Q Consensus 3 ~~~~w~k------------------------~de~~~~~~~~~~~~s~~~p~-~------~~ga--s~i~~~~~~~~~~- 48 (533) -|+||+| .++++....+.-.-.+++.+. + .+|+ .+...+..+..++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~ 80 (537) T protein:vir:10 1 MFKFWRKKTVEAVQSSIAERIEPRVGIFGAGDDEKPFTRAQLVHQTMMAIRDHAIAMMPKVDGSHPDMAMDGLDVEGGTF 80 (537) T ss_pred CCCccccccccccccccccccccccCCCcccchhhHHHHHHhhhhccCCCCCccCcccccccccccchhccccccchhhh Confidence 3444433 233343333332222333211 1 1221 1111111111111 Q ss_pred ---------hhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHH--- Q lcl|Aclame:pro 49 ---------AGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILS--- 116 (533) Q Consensus 49 ---------~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~--- 116 (533) ......||+..+. ..++...|+ .|+.++.||+.++++|+ .++-.+..+=. .+...+..+ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~a~Y~----~~~l~r~iVd~~A~d~~---r~~~~i~~~~~-~~~~~~~~~~l~ 151 (537) T protein:vir:10 81 SAYANPNLSEGLVLWYAQQAFI-GHQMCALIA----THWLVNKACSQMPRDAM---RKGYKIISDDG-NELDPKDAKFID 151 (537) T ss_pred hhhccccccchhhhhccccCCc-cHHHHHHHH----hCchhhhhhhhhhHHhh---cCCceeecCCc-ccccHHHHHHHH Confidence 0011223333343 345555554 68999999999999998 44333333211 123333323 Q ss_pred HHHHHhhhHHHHHHHHHHHhhcCceeEEEee---cC------------CCCCeeeeEEcCcceeeEEe------ecc--- Q lcl|Aclame:pro 117 YLDYVINIEKNAYPIIRNMIKYGDMFLHILE---KG------------SDGTIEKFQVVSPYIFSKRY------NPE--- 172 (533) Q Consensus 117 ~i~~ll~f~~~~~e~~R~wyvDGr~~~~kii---d~------------~k~gI~elr~ldP~~ik~v~------d~~--- 172 (533) ...+.|++..++.+.++.--++|..+....+ |+ .++++..|+.|||..+.+.. |.. T Consensus 152 ~~~~~l~~~~~l~~a~~~~rlyG~~~i~i~v~~~D~~~~~~Pl~~~~i~kg~~k~l~vidp~~~~~~~~~~~~~dp~sp~ 231 (537) T protein:vir:10 152 RYDRAFNIKKHAIQFVRKGRIFGIRIALFKVDSPDPYYYEKPFNIDGVMPGAYKGIVQIDPYWCAPLLDAQASSNPVSMH 231 (537) T ss_pred HHHHHhhHHHHHHHHHHhcccccceEEEEeecCcCCcccccccccccccccceeEEEEechhhcccccchhhhccCCccc Confidence 3344578888888888876777876555443 21 13467889999998776532 111 Q ss_pred -CcEEEEEecccceecccCCcccccCcccEEEEecCcccCc-----ccccchhHHHHHHHHHHHHHHHH--HHHHHHHhc Q lcl|Aclame:pro 173 -TDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNF-----FPYGRSYLESARAIWNQLRLMED--ALMLYRVVR 244 (533) Q Consensus 173 -g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~-----~~~g~s~L~~Aik~~NqLrm~Ed--alVIyRi~R 244 (533) |+-.+|..+ +..+-+.+++||....+-+. .-.|+|.|.++...+..+..... +.++|+-. T Consensus 232 fg~P~~y~v~-----------g~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~- 299 (537) T protein:vir:10 232 FYEPTYWLIN-----------GKKYHRSHLAIYINDEVVDFLKPSYIYGGVPLPQQIMERVYAAERTANEGPMLAMTKR- 299 (537) T ss_pred cCCceeeeec-----------CeEecceeEEEecCCCCchhhhcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcC- Confidence 112233221 23567788999875443332 12599999996655544444333 56666633 Q ss_pred cccceeeecCCC-CCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCC Q lcl|Aclame:pro 245 SVDRRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSK 323 (533) Q Consensus 245 APeRr~fyidvG-nlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~n 323 (533) -+++.++.- .|....+-.-..+.++++|. +.|-+..+... ++ -++...+-++ T Consensus 300 ---~~v~k~~~~~~l~~~~~~~~r~~~~~~~r~------n~g~~~id~e~-------e~-----------~e~~~~~lsg 352 (537) T protein:vir:10 300 ---QTVLKVDAAQVLANKQQFDETMSWWTATRD------NYQVRVVDKDN-------ED-----------VVQIDTTLND 352 (537) T ss_pred ---CceeeechHHhhcCHHHHHHHHHHHHhhcC------CcceeEecCCC-------ce-----------eEEEeccCCC Confidence 456666642 22222222222223444442 22221111100 00 1222233233 Q ss_pred CChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhh--hhhh-ccCCCccceeEE Q lcl|Aclame:pro 324 VDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELER--MVRM-NKEFADQDFRLV 400 (533) Q Consensus 324 lg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~--qLil-k~i~t~eew~~~ 400 (533) |..+ +..|.+.+-.+++||+.+|-..+.-|-+++-.-|...|+.+|+++|.++..+|++ +|+. .....+.+|+|. T Consensus 353 l~~~--l~~~~~~iAa~~~IP~t~L~G~sp~GlnatGe~D~~~yyd~I~~~Qe~l~p~l~~l~~ll~~~~~~~~~~~~i~ 430 (537) T protein:vir:10 353 LDKV--IMNQYQLVCAIARTPAPKMLGTVPTGFNSTGDYEEASYHEECESTQDDMRPLIDRHHQLVCRSHLRKRIRVKVE 430 (537) T ss_pred HHHH--HHHHHHHHHhhhCCCceeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceEEE Confidence 4333 7899999999999999998655444554555567777999999999877665543 2333 334456789999 Q ss_pred ecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHH-HHHHhhhcccCCCCCccc-ccccchhhhcC Q lcl|Aclame:pro 401 MNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQ-EEVAEAAGGGGLFDTGGF-GEETTPADFLG 478 (533) Q Consensus 401 f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q-~~~i~~E~~~~~~~~~~~-~~~~~~~~~~~ 478 (533) |..=.-.++...+|+...+.+++..+- + -.-++.++.-+ ...-...+-.++.+.... +.+..+ .. T Consensus 431 f~pL~~~s~kEkAei~~~~a~a~~~~~---~-------~G~i~~~Evr~~L~~~~~~g~~~l~~~~~~ed~e~~~---~~ 497 (537) T protein:vir:10 431 FPPMDAPKESERADTFLKKMQAAKLAF---E-------MGAVDGVDVNEYLRMDPTLGFTSITPAMRPTDAEDID---VD 497 (537) T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHHHH---H-------cCCCCHHHHHHHHhccCccccccccCCCChhhhhccc---CC Confidence 998888889999999999988887631 1 12234333221 111111112222221110 000000 00 Q ss_pred ccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccC Q lcl|Aclame:pro 479 ERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEE 526 (533) Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (533) .+.+..++ .+...++.+.+|.. .-|..-+..-.+|..++. T Consensus 498 -----~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~ 537 (537) T protein:vir:10 498 -----DEGKPVRI-IEDQPAPSEMFGAT--SSGESANDPRDSGAAFED 537 (537) T ss_pred -----ccCCcCCC-CCCCCCccccCCCC--ccccccCCCccCccccCC Confidence 01111000 00011111111111 111222222233444433 No 20 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=99.77 E-value=1.4e-17 Score=113.04 Aligned_cols=479 Identities=11% Similarity=0.101 Sum_probs=209.8 Q ss_pred CCCcc---hhhhhhhHHHHHHhhcccccccCccc---CCCC-----cccCCCCC---ccccchhhcccccCccccchHHH Q lcl|Aclame:pro 1 MPSLE---KYKKLNEAVNFTNFLSPMYGMGAPHG---AGGS-----SMIPINMY---HPFATAGYASRFYGGIEFNRFFL 66 (533) Q Consensus 1 ~~~~~---~w~k~de~~~~~~~~~~~~s~~~p~~---~~ga-----s~i~~~~~---~~~~~~~~~~~~ygg~~~n~~~l 66 (533) ||.+- -|.+.-++- .+.-...-|..|.. .|++ ...-.++. .+.+..-..+.+|........+| T Consensus 37 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gyql 113 (765) T protein:vir:96 37 MIKLGKIRGWNVEPEKA---PVIRSVKDFLEPGLSVAMDSAYGDGPTPAAKAAAGGQNPYVVPTMLQDWYNSQGFIGYQA 113 (765) T ss_pred chhHHHHhhcccccccC---CCCCCCCcccCcccceeccccccccccchHHHhhhccCccchhhHHHhhhcccCCccHHH Confidence 44422 344433321 11111112221210 1111 00000000 00000111112222222344566 Q ss_pred HHHHHHHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHH---HHHHHhhhHHHHHHHHHHHhhcCceeE Q lcl|Aclame:pro 67 YDMYDRMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILS---YLDYVINIEKNAYPIIRNMIKYGDMFL 143 (533) Q Consensus 67 i~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~---~i~~ll~f~~~~~e~~R~wyvDGr~~~ 143 (533) ...|+ .|+.++.+|+.++++|+- ++ +.|...+-+..++..+ ...+.|++..++.+.+|.--++|..|. T Consensus 114 ~alY~----~~~l~rkiVd~pAeDa~R---~g--~~I~~~~~e~~~~~~~~l~~~~~rl~v~~~l~ea~~~~RlyGga~i 184 (765) T protein:vir:96 114 CAIIS----QHWLVDKACSMSGEDAAR---NG--WELKSDGRKLSDEQSALIARRDMEFRVKDNLVELNRFKNVFGVRIA 184 (765) T ss_pred HHHHH----hCchhhhhhhcchHHhhc---CC--ceeecCccccCHHHHHHHHHHHHHhhHHHHHHHHHHHhhhceeeEE Confidence 66555 589999999999999983 33 3333333334444333 344567888899999884444554443 Q ss_pred EEee---cC------------CCCCeeeeEEcCcceeeEEe------eccCcEEEEEecccceecccCCcccccCcccEE Q lcl|Aclame:pro 144 HILE---KG------------SDGTIEKFQVVSPYIFSKRY------NPETDTWYYVITDVYRNVVSGYFNEDIPEEDVI 202 (533) Q Consensus 144 ~kii---d~------------~k~gI~elr~ldP~~ik~v~------d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi 202 (533) ..++ |+ .+++++.|..|||..+.... |.. .-.||.. ..+..+ +.++-+.++| T Consensus 185 ~i~i~~~D~~~l~~PL~~~~I~kg~~kgl~vldp~~~~~~~v~e~~~Dp~-sp~fg~P-~~y~i~-----g~~IH~SRli 257 (765) T protein:vir:96 185 LFVVESDDPDYYEKPFNPDGIAPGSYKGISQIDPYWAMPQLTAESTADPS-AEHFYEP-DFWIIS-----GKKYHRSHLV 257 (765) T ss_pred EEEecccCcchhhccccccccccceeeEEEEechhhcccccchhcccccc-ccccCcc-eeeeec-----CceeccceEE Confidence 3333 21 12357778888887665422 211 1122211 111111 1245677888 Q ss_pred EEecCcccCc-----ccccchhHHHHHHHHHHHHHHHH--HHHHHHHhccccceeeecCCCC-CchhhHHHHHHHHHHHh Q lcl|Aclame:pro 203 HFSHKIDTNF-----FPYGRSYLESARAIWNQLRLMED--ALMLYRVVRSVDRRVFYVDVGN-VPPDKINEYLTNIAMQY 274 (533) Q Consensus 203 ~~~~~~~~d~-----~~~g~s~L~~Aik~~NqLrm~Ed--alVIyRi~RAPeRr~fyidvGn-lp~~kAeqy~~~im~~~ 274 (533) +|...-+-+. .-+|+|.|+++...+..+..... +.++++-. -+++.++... +-...+-..--..++++ T Consensus 258 ~~~g~~lpd~lk~~~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~----~~v~k~~~~~~l~~~~~l~~r~~~~~~~ 333 (765) T protein:vir:96 258 VVRGPQPPDILKPTYIFGGIPLTQRIYERVYAAERTANEAPLLAMSKR----TSTIHVDVEKAIANEDAFNARLAFWIAN 333 (765) T ss_pred EecCCCchhhhccccCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhc----cceeeechHhhhccHHHHHHHHHHHHHh Confidence 8864443222 12699999996554444433332 66777633 3456666542 22122211112223333 Q ss_pred hhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChHHH-HHHHHHHHHHhcCCCeeeccCCCC Q lcl|Aclame:pro 275 KRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLAED-VEYMLNRLISALKVPKAFIGYEGD 353 (533) Q Consensus 275 knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i~D-v~Yf~~kLy~aL~VP~srl~~~~~ 353 (533) |+ +.|-+..+. .-+++++.- +|+-++| +..|.+.+-.+.+||+.+|-..+. T Consensus 334 r~------n~g~~~id~---------------------ee~~e~~s~-~lsgl~d~l~~~~~~iAaas~IP~t~LfGqsp 385 (765) T protein:vir:96 334 RD------NHGVKVIGI---------------------DETMEQFDT-NLSDFDSVIMNQYQLVAAIAKTPATKLLGTSP 385 (765) T ss_pred cC------CceeEEecC---------------------CcceeEEec-ccCCHHHHHHHHHHHHHhhhCCCeeeeccCCc Confidence 32 122211111 123333321 3444444 899999999999999999987654 Q ss_pred ccchhhhhHHHHHHHHHHHHHHHH-HHHHHhh---hhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhh-- Q lcl|Aclame:pro 354 VNAKNTLATQDIKFNNTIKRIQGF-FVEELER---MVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLK-- 427 (533) Q Consensus 354 ~gr~~eI~rde~kF~kfI~rLr~~-F~~~l~~---qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~-- 427 (533) -|.+++---|...|+.+|+++|.. +..+|++ -|++.+.+ +.+|.|.|..=..-+|...+||...+.++++.+- T Consensus 386 ~GlnATGe~D~~nYyD~I~s~Qe~~l~p~le~L~~li~~s~~i-~~d~~i~FnpL~~~sekEkAei~~k~Aea~~~~~~~ 464 (765) T protein:vir:96 386 KGFNATGEHETISYHEELESIQEHIFDPLLERHYLLLAKSESI-DVQLEIVWNPVDSTTSQQQAELNNKKAATDEIYINS 464 (765) T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhc Confidence 444333334666699999999965 4444442 24455655 4589999998777788888999999888887641 Q ss_pred hhhhHHHHHHHHh--------cCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccc-cCCCccc--ccC Q lcl|Aclame:pro 428 GWVREDWIYSNIL--------QIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIES-PRGRTEF--DFG 496 (533) Q Consensus 428 pyvgk~~i~k~il--------~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~ 496 (533) .-++.+=+++.+. .+++++++.+..++.+..+....-+. +.-..+.........|... +.++++. +-+ T Consensus 465 Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~~~~~pe~~~~~~~~~~-~~~~~~~e~~~~~a~p~~~eg~~~~~~~~p~~ 543 (765) T protein:vir:96 465 GVVSPDEVRERLRDDPRSGYNRLTDDQAETEPGMSPENLAELEKAGA-QSAKAKGEAERAEAQAGAVEGAGDPVPAAPRG 543 (765) T ss_pred CCCCHHHHHHHHhccccCCCCCCCccccccccCCCccccccccCCCc-ccccccCccccccCCCCccCCCCcccccCCcc Confidence 2233333444322 23443333333333322222211100 0000000000000000000 0000000 000 Q ss_pred CCCCccCCCccCcCcccCCchhhcC---CcccCCCCCCCC Q lcl|Aclame:pro 497 TEGGEELGGELNLGGAFEEFEEETG---GGEEELPFPEEE 533 (533) Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~ 533 (533) +++..+.|-+ -.+.+..+..+.+- .+.+...++++. T Consensus 544 ~~p~~~~~~~-~~g~~~~~p~~~~p~~~~~~~~~~~~~~~ 582 (765) T protein:vir:96 544 TKPLAKAAEE-GAGEAATPPSRPNPRAELRNLLSDLLSKL 582 (765) T ss_pred cCCccccccc-cCccccCccccccccccchhcccchhhhh Confidence 1111000000 00000000000000 000000001000 No 21 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=99.74 E-value=7.4e-17 Score=109.01 Aligned_cols=456 Identities=13% Similarity=0.077 Sum_probs=212.2 Q ss_pred CCC--cchhhhhhhHHHHHHhhcccccc-cCccc----CCCCcccCCCCCccc-------cchhhcccccCccccchHHH Q lcl|Aclame:pro 1 MPS--LEKYKKLNEAVNFTNFLSPMYGM-GAPHG----AGGSSMIPINMYHPF-------ATAGYASRFYGGIEFNRFFL 66 (533) Q Consensus 1 ~~~--~~~w~k~de~~~~~~~~~~~~s~-~~p~~----~~gas~i~~~~~~~~-------~~~~~~~~~ygg~~~n~~~l 66 (533) .=| =-+|++.|+.. .--.+...-+. ++|.. .++....- .+|. +.++..+++.+.++.+..-. T Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---~d~~~~~~~r~g~~~~~~~~g~~~~~epp~d 85 (648) T protein:vir:79 10 FWSRISLMWRDEDDDK-EPLVLEESMQLGEAPGAMPKGGGGGGSAK---RDPKMSLVKRIGLAIMDGGGGGRDFEEPEFD 85 (648) T ss_pred hhhhhhhhccCccccc-cccccccccccCCCccccCCCCccccccc---ccchhHHHHHhHHHHHhhcCCccccccCCcC Confidence 111 23566655433 11111111122 13332 11111110 1221 22333333333334444344 Q ss_pred HHHHHHHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHH-H----HhhhHHHHHHHHHHHhhcCce Q lcl|Aclame:pro 67 YDMYDRMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLD-Y----VINIEKNAYPIIRNMIKYGDM 141 (533) Q Consensus 67 i~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~-~----ll~f~~~~~e~~R~wyvDGr~ 141 (533) +..+.+++.+.|.|.+||+.|++.+.... ..+.-++-.-.+.+...++ . .+......+.++..+++.|+. T Consensus 86 ~~~l~~l~~~np~V~~aI~iia~~ia~l~-----~~i~~~~~~~~~~~~~~~ll~rPn~~~t~~~f~~~l~~~lll~GNA 160 (648) T protein:vir:79 86 FNEITSAYNTEGYVRQAVDKYIEMMFKAD-----WDFVSKNPNAVEYIRMRFTLMAEATQIPTNQLFIEIAEDLVKYCNV 160 (648) T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHhhCc-----ceEEecCCccchhhHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCe Confidence 56676677778999999999987754332 1122111111112111111 1 123455678888889999999 Q ss_pred eEEEeecCCC--------------CCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecC Q lcl|Aclame:pro 142 FLHILEKGSD--------------GTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHK 207 (533) Q Consensus 142 ~~~kiid~~k--------------~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~ 207 (533) |..++.+... ..+.++..|+|.+|++.++..|...+|+|... .++....+++++|||+... T Consensus 161 YveiiRd~~G~~~~~l~~~~~~~~~~v~~l~pl~p~~v~v~~d~~g~~~~Y~y~~~-----g~~~~~~~~~~dIIHik~~ 235 (648) T protein:vir:79 161 VIAKSRAKDALPFQGMNVMGVGDSMPVAGYFPLNLASMKVKRDKFGMIKGWQQEQE-----GQDKPQKFKPEDIVHIYYK 235 (648) T ss_pred EEEEEecCCCccchhhhhhhhccccceeeeEeecCceeEEEEcCCCceeeeEEEec-----CCceeEEecCccEEEEccC Confidence 9998886432 12678889999999999999998888988643 1334466789999999876 Q ss_pred cccCcccccchhHHHHHHHHHHHHHHHHHHH-HHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCe Q lcl|Aclame:pro 208 IDTNFFPYGRSYLESARAIWNQLRLMEDALM-LYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQ 286 (533) Q Consensus 208 ~~~d~~~~g~s~L~~Aik~~NqLrm~EdalV-IyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGe 286 (533) ...+ +.||+|-|..|+..+.....+++... .|+-- |-..-++.+..+......+.+.++.+...|++..+- .| T Consensus 236 ~~~d-~~~GlSpi~~a~~aI~l~~aa~~~~~~fF~NG-a~P~gil~~~~~~~~~e~~k~~~e~~~~~~~~~~i~---gg- 309 (648) T protein:vir:79 236 REKG-RAFGTPWLLPALDDIRALRQVEENVLRLVYRN-LHPLWHVKVGLEQEGFGAEEGEVDLVRGEVENMDVE---GG- 309 (648) T ss_pred CCCC-CceeccHHHHHHHHHHHHHHHHHHHHHHHhcc-CCccEEEEeCCCccchHHHHHHHHHHHHhccccccc---cc- Confidence 5444 35999999999999988887777332 22211 211333333333333334444455554444432111 11 Q ss_pred eecccccchhhhHHhhhhcccccCCCcceeeec-CCCC---CChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhH Q lcl|Aclame:pro 287 FLGIDNYFSIESILKDYFIPRRGDRRAVEIDIL-QGSK---VDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLAT 362 (533) Q Consensus 287 i~d~~~~~n~~smleDywlprR~g~~gtEi~TL-pG~n---lg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~r 362 (533) +...+...+ +.+. +.-++-.++..+.+.++.+||...|+..++.++++. .. T Consensus 310 ------------------------~v~~~~~~i~~~~s~~dlqfle~rk~~~~eIa~aFgVPP~lLG~~~~ss~sta-e~ 364 (648) T protein:vir:79 310 ------------------------MVTTERVNISSIASNQIIDAKEYLKHFEQRAFTVLGVSELMMGRGGTASRSTG-DN 364 (648) T ss_pred ------------------------ccccceeeccccCCHHHHHHHHHHHHHHHHHHHHhCCCHhHcccCCCccchHH-HH Confidence 111111111 1111 212233578889999999999999986555444332 22 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh----hhhccCCC-----ccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHH Q lcl|Aclame:pro 363 QDIKFNNTIKRIQGFFVEELERM----VRMNKEFA-----DQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRED 433 (533) Q Consensus 363 de~kF~kfI~rLr~~F~~~l~~q----Lilk~i~t-----~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~ 433 (533) +..-|...|..|+..+..++..+ +++...+. ....+|+|..-..-.+...+ +.+.. T Consensus 365 ~~~~~~~~i~~l~~~i~~~le~~~~~~ll~e~~l~~~l~~d~~ieF~~~~Llr~D~~~~a-------~~~~~-------- 429 (648) T protein:vir:79 365 LSSDFKDRIKALQKVMATFINEFMVKEILMEGGFDPVLNPDDKVEFRFNEIDMDSKIKLE-------NQAVF-------- 429 (648) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccceEEEeecccchhhHHHHH-------HHHHH-------- Confidence 33346777777776665444333 23332222 12234555321111111111 22211 Q ss_pred HHHHHHhcCChhhhHHHHHHhhhcccCCCCCcc---cccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcC Q lcl|Aclame:pro 434 WIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGG---FGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLG 510 (533) Q Consensus 434 ~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (533) +-+..-||.++.- +.++-.++....+ ...++.+.........+.-.|.+...++.++++.... T Consensus 430 --l~~~GilT~NEaR-----~~lGlpPi~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~~e------- 495 (648) T protein:vir:79 430 --LYEHNAISEDEMR-----ELIGRDPVDDGEGRAKMHLQMVTIAQATALAALAPTPAGGSSASASGDKKKKA------- 495 (648) T ss_pred --HHhCCCcCHHHHH-----HHhCCCCCCCCCCccccccccccchhccccccCCCCCCCCCCCCccccccccc------- Confidence 0122445643322 2233323221110 0011111111110000001111111111112111111 Q ss_pred cccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 511 GAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 511 ~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) ......+.+.+|.+ |. |+.+ T Consensus 496 -~~~~~~~~~~~g~~-~~-~~~~ 515 (648) T protein:vir:79 496 -TDNKTKPTNQHGTK-TS-PKKQ 515 (648) T ss_pred -cCCCCCCCCCCCcC-CC-Cccc Confidence 11111222334433 22 3334 No 22 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.74 E-value=3.9e-17 Score=110.54 Aligned_cols=465 Identities=10% Similarity=0.012 Sum_probs=205.0 Q ss_pred CCCcchhhhhhhHHHHHHhhcccc-------cccCcccCCCCcccCCCCCccccc-hhhcccccCccccchHHHHHHHHH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMY-------GMGAPHGAGGSSMIPINMYHPFAT-AGYASRFYGGIEFNRFFLYDMYDR 72 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~-------s~~~p~~~~gas~i~~~~~~~~~~-~~~~~~~ygg~~~n~~~li~~YR~ 72 (533) ..||.-=.+.+-++.--+-+.-.- ++.++..++..+-+.....-..+. ......+|.....+..++...|+ T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~a~Y~- 92 (532) T protein:vir:94 14 YATLQQAQRVDAKRATHTSLGLATAHEIDPTAYSPYERNAAQNAMAMDYGLQTGRNGRNALSFVEATSWPGFPTLALLA- 92 (532) T ss_pred hhhhhhHhhhhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccCcccccccccccccccccchHHHHHHHH- Confidence 223333333333332211111111 112222222222222110011111 11112233344456677777776 Q ss_pred HhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHH---HHHHHhhhHHHHHHHHHHHhhcCceeEEEeec- Q lcl|Aclame:pro 73 MDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILS---YLDYVINIEKNAYPIIRNMIKYGDMFLHILEK- 148 (533) Q Consensus 73 m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~---~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid- 148 (533) .|+.++.||+.++++|+. ++-.+...- +.+......+ .-.+.|++..++.+.+|.--++|..+....++ T Consensus 93 ---~~~l~r~~Vd~~aed~~r---~~~~i~~~~-~~~~~~~~~~~i~~~~~~l~v~~~l~~a~~~~rlyG~a~i~i~v~~ 165 (532) T protein:vir:94 93 ---QLPEYRTMHETPADECVR---AWGKITCSS-KDELAADKATRITQKLEQYNVRTLVRTVVIHDQAYGGAHVFPHLKM 165 (532) T ss_pred ---cCchhhhhhccchHHHhh---CCceEeeCC-ccccchHHHHHHHHHHHhhhHHHHHHHHHHhhhcccceEEEEEecc Confidence 489999999999999983 322222211 1122233322 33445678888888888777777765443332 Q ss_pred --------------C---CCCCeeeeEEcCcceeeEEeecc--------CcEEEEEecccceecccCCcccccCcccEEE Q lcl|Aclame:pro 149 --------------G---SDGTIEKFQVVSPYIFSKRYNPE--------TDTWYYVITDVYRNVVSGYFNEDIPEEDVIH 203 (533) Q Consensus 149 --------------~---~k~gI~elr~ldP~~ik~v~d~~--------g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~ 203 (533) + .++.+..+..|||..|.+..... |.-++|.- ..+.++-+.+++| T Consensus 166 ~~~~~~~~~p~~l~~~~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp~fg~P~~y~v----------~~g~~iH~SRli~ 235 (532) T protein:vir:94 166 DGDSVPADAPLLLSPSFVQRGCLIGFATIEPMWLSPNAYNATDPTLPSFYKPDSWIA----------TSGKKIHSSRIHT 235 (532) T ss_pred CCccccccccccccccccccceeeEEEeechheecccccccccccccccCCceeEEE----------ccCeeeccceEEE Confidence 1 12346788889998876532111 11122211 1124677889999 Q ss_pred EecCcccCc-----ccccchhHHHHHHHHHHHHHHHH--HHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhh Q lcl|Aclame:pro 204 FSHKIDTNF-----FPYGRSYLESARAIWNQLRLMED--ALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKR 276 (533) Q Consensus 204 ~~~~~~~d~-----~~~g~s~L~~Aik~~NqLrm~Ed--alVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~kn 276 (533) |....+-+. .-+|+|.|.++...+..+..... +.++|+.. -.++.++.-++ -+......+..++.- T Consensus 236 f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~----~~v~k~~~a~~---ls~~~~~~~~~r~~~ 308 (532) T protein:vir:94 236 VVGRPVGDMLKAAYSFRGVSISQLAMPYVDNWLRTRQSVSDTVKQFS----MTNLATDMAQL---LAPGGAQSLDARLQL 308 (532) T ss_pred ecCCCchhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcC----CceeeechHHh---hcchhHHHHHHHHHH Confidence 965443332 12589999997666666555544 55566633 33343332221 111112222222211 Q ss_pred ceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeec--CCCCCChHHHHHHHHHHHHHhcCCCeeeccCCCCc Q lcl|Aclame:pro 277 DYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDIL--QGSKVDLAEDVEYMLNRLISALKVPKAFIGYEGDV 354 (533) Q Consensus 277 k~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TL--pG~nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~ 354 (533) -..+-++.|-+..+.. .-+++++ +-++|+.+ +..|.+.+-.+++||+.+|-..+.. T Consensus 309 ~~~~~~n~g~~~id~~--------------------~e~~e~~~~~lsgl~~~--l~~~~~~iAaa~~IP~t~LfG~sp~ 366 (532) T protein:vir:94 309 FNLYRDNRNIGALDKG--------------------TEEIQQTNTPLSGLDSL--QAQSQEQMAAVSHIPLVKLLGITPN 366 (532) T ss_pred HHhhcCCccceEEcCC--------------------CceeEEEecccCCHHHH--HHHHHHHHHhHhCCCeeeeecCCcc Confidence 0011112222111110 0123333 22334443 8999999999999999998655544 Q ss_pred cchhhhhHHHHHHHHHHHHHHHHH-HHHHhh--hhhh--ccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhh- Q lcl|Aclame:pro 355 NAKNTLATQDIKFNNTIKRIQGFF-VEELER--MVRM--NKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKG- 428 (533) Q Consensus 355 gr~~eI~rde~kF~kfI~rLr~~F-~~~l~~--qLil--k~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~p- 428 (533) |.+++-.-|...|+.||+++|..+ ..+|++ ++++ ..+..+++|.|.|+.=...++...+|+...+.++++.+-- T Consensus 367 GlnstGe~D~~~yyd~I~s~Qe~~l~p~le~l~~~l~~s~~g~~~~d~~~~f~pL~~~s~kEkAei~~~~a~a~~~~~~~ 446 (532) T protein:vir:94 367 GLNASSDGEIRVWYDFIAGYQATNLTPLMEWIIDLIQLSEYGQIDPGLAWEWSPLMELDDKELAEVRQLNASTDSTLMEL 446 (532) T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhc Confidence 544444446666999999999653 444433 2232 2333456899999986667788889999888888766411 Q ss_pred -hhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCcc Q lcl|Aclame:pro 429 -WVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGEL 507 (533) Q Consensus 429 -yvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (533) -++.+=++.. |.+..+. +-.+.-++.+..++ .+...........+.|...+++.. |+++..++ T Consensus 447 Gvi~~~Evr~~-l~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d- 510 (532) T protein:vir:94 447 GVIDAKMVQQR-LAADPTS----------GYAGALGERDELDD-VEEIAKQLMAAALNPPATAPQTPN---PQPDSEDD- 510 (532) T ss_pred CCCCHHHHHHH-HhcCCcc----------cccccccccccccc-ccchhhhhcccccCCCCCCCCCCC---CCCCCCCC- Confidence 1222222221 1111100 00000000000000 000000001111111111101000 00000000 Q ss_pred CcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 508 NLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) ..++++. .....|.+ ++|--. T Consensus 511 ~~~~~~~--~~~~~~~~---~~~~~~ 531 (532) T protein:vir:94 511 QTDNQPD--AQADPAQN---DQPVGN 531 (532) T ss_pred CCCCccC--CCcccccc---CCCcCC Confidence 0000000 00001110 111111 No 23 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.72 E-value=2.2e-16 Score=106.41 Aligned_cols=401 Identities=11% Similarity=0.056 Sum_probs=203.4 Q ss_pred cccccCcccCCCCcccCCCCCccc--cchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCce Q lcl|Aclame:pro 23 MYGMGAPHGAGGSSMIPINMYHPF--ATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNI 100 (533) Q Consensus 23 ~~s~~~p~~~~gas~i~~~~~~~~--~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~ 100 (533) |-=|-+++..... +.=+..+.+ ........+|.+...+-.++...|+ .|+.++.||+.++++|+..+.. T Consensus 1 ~~~~m~~~~~~~~--~~D~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Y~----~~~l~~~~Vd~~aed~~r~g~~--- 71 (435) T protein:vir:79 1 MGVFMSDKVKAIT--KEDGYNEIFGSKDGTFRPNAFYMQRAAFKALSQFYE----EDGMARRIVDVIPEEMVTPGFK--- 71 (435) T ss_pred CCcccccccccch--hhcchhhhhcccccccccCcccCCcCCHHHHHHHHh----cCchhhhhhccchHHhhcCCce--- Confidence 3333344421111 110111111 0111112223333345445555555 5899999999999999955432 Q ss_pred eeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEee-cC--------CCCCeeeeEEcCcceeeEEe-- Q lcl|Aclame:pro 101 VDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILE-KG--------SDGTIEKFQVVSPYIFSKRY-- 169 (533) Q Consensus 101 v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kii-d~--------~k~gI~elr~ldP~~ik~v~-- 169 (533) |.-+ + .++.++...+.|++..++.+.+|.--++|..++...+ |. .++.|..++.+||..+.+.. T Consensus 72 --i~g~--~-~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~~g~i~~i~v~d~~~i~~~~~~ 146 (435) T protein:vir:79 72 --VDGV--K-NEKSFKSRWDELRLNAKIIDALSWSRLFGGSAILAVVADNKMLKSPVKPGAQLEDIRVYDRYQITIHERE 146 (435) T ss_pred --ecCC--C-hHHHHHHHHHHhhHHHHHHHHHHhhhccccEEEEEEecCCCCcccccccCCceeeEEeechhhccchhhc Confidence 3222 2 2234555566778999999999988889986555544 31 34568899999998875432 Q ss_pred -ec----cCcEEEEEecccceecccCCcccccCcccEEEEecCcccCc-----ccccchhH-HHHHHHHHHHHHHHH--H Q lcl|Aclame:pro 170 -NP----ETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNF-----FPYGRSYL-ESARAIWNQLRLMED--A 236 (533) Q Consensus 170 -d~----~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~-----~~~g~s~L-~~Aik~~NqLrm~Ed--a 236 (533) |+ +|+-.+|..++ +.+..+..+-+.++++|...-+-+. ..+|.|.| .++...+..+..... + T Consensus 147 ~dp~sp~fg~P~~y~v~~-----~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~ 221 (435) T protein:vir:79 147 TNARSVRYGEPKLYKISP-----GGDIPEFFVHYSRICIIDGERVSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELAT 221 (435) T ss_pred cCCcccccCcceEEEEec-----CCCCCceEEcceeEEEecCCcchhhhccccCcccchHHHHHHHHHHHHHHHHHHHHH Confidence 21 23334554432 2334456777889999974332221 23677755 664443333333333 5 Q ss_pred HHHHHHhccccceeeecC-CCCC-chhhHHHHH---HHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCC Q lcl|Aclame:pro 237 LMLYRVVRSVDRRVFYVD-VGNV-PPDKINEYL---TNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDR 311 (533) Q Consensus 237 lVIyRi~RAPeRr~fyid-vGnl-p~~kAeqy~---~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~ 311 (533) .++|+-. -+++.++ +.++ ....++..+ -..++++|+ .+|.+..+.. T Consensus 222 ~l~~~~~----~~v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~------~~~~~~i~~~------------------- 272 (435) T protein:vir:79 222 QLLRRKQ----QAVWKARDLALMCDDEEGRYAARLRLAQVDDESG------VGKAIGIDAT------------------- 272 (435) T ss_pred HHHHHhc----CccccchhHHHhhcCccchHHHHHHHHHHHHhcC------CCCceeEecC------------------- Confidence 5666632 3344442 2211 111111111 122233332 1221111110 Q ss_pred CcceeeecCCCCCChHHH-HHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHH-HHHHHhhhhhhc Q lcl|Aclame:pro 312 RAVEIDILQGSKVDLAED-VEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGF-FVEELERMVRMN 389 (533) Q Consensus 312 ~gtEi~TLpG~nlg~i~D-v~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~-F~~~l~~qLilk 389 (533) .-+++++. -+++-++| +.+|...+-.+.+||+.+|-..+..|.+++-.-|...|+.+|+++|.. +..+|.+- +.- T Consensus 273 -~e~~e~~~-~~lsgl~~~~~~~~~~iaaa~~IP~t~L~G~s~~glnstgd~d~~~yyd~i~~~Qe~~l~p~l~~l-~~l 349 (435) T protein:vir:79 273 -DEEYEVLN-SDVSGVPEFLQEKIDRIVALTGIHEIIIKNKNTGGVSASQNTALETFYKLIDRKRVEDYKPILEFL-LPF 349 (435) T ss_pred -CcceEEEe-cccCCHHHHHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHH Confidence 01223221 13333333 899999999999999999976666666666666777799999999965 45555532 211 Q ss_pred cCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHH-HHHHhhhcccCCCCCcccc Q lcl|Aclame:pro 390 KEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQ-EEVAEAAGGGGLFDTGGFG 468 (533) Q Consensus 390 ~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q-~~~i~~E~~~~~~~~~~~~ 468 (533) ++-.++|.|.|.+=..-+|...+|+...+.++++.+ +.. .-++.++..+ ...+..+.. +. T Consensus 350 -i~~s~d~~~~f~pL~~~sekEkAei~~~~a~a~~~~--------~~~--g~i~~~e~r~~L~~~~~~~~---~~----- 410 (435) T protein:vir:79 350 -MISETEWSIEFEPLSVPSDKDKAEIMAKNVESVVKL--------KAE--QAINLKETRDTLRSICPDLK---IM----- 410 (435) T ss_pred -hhcCCCCeEEeCCCCCCCHHHHHHHHHHHHHHHHHH--------Hhc--CCCCHHHHHHHHHHhccccC---CC----- Confidence 233379999999777777888889988888887763 111 1233333222 111111100 00 Q ss_pred cccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCccc Q lcl|Aclame:pro 469 EETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEE 525 (533) Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 525 (533) ++..++ -+++.|...++.. -||.|+ T Consensus 411 ~~~~~~--------------~~~~~d~~~~~~~------------------e~g~~~ 435 (435) T protein:vir:79 411 DNDNIE--------------LPEPEDLDPEPGQ------------------EGGLNK 435 (435) T ss_pred Cccccc--------------CCccccCCCCCCC------------------CCCCCC Confidence 000110 0111111111111 122222 No 24 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=99.71 E-value=4.9e-17 Score=109.99 Aligned_cols=391 Identities=13% Similarity=0.092 Sum_probs=204.1 Q ss_pred hcccccccCcccCCCCcccCCCCCccccchhhcccccCc-cccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCC Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGG-IEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENG 98 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg-~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~ 98 (533) |.++.|+.- ...+|. + +. .+|+. ..++..++...|+ .|+.++.||+.++++|+-.... T Consensus 1 ~~~~D~~~n-~~~gg~--------~-~~------~~~~~~~~~~~~~l~a~Y~----~~~l~~~~Vd~~aed~~r~g~~- 59 (422) T protein:vir:10 1 MVKTDSYAN-IFLGGS--------D-GS------EIYGSLQNQAPTILASLYA----DNALVRRIIDTIPETALAAGFH- 59 (422) T ss_pred CccchhhHH-HHcCCC--------C-Cc------cccCcccccCHHHHHHHHH----hChhhHHHHhhhhHHHhcCCcc- Confidence 444444310 000110 0 01 11111 1234455555555 5899999999999999833322 Q ss_pred ceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEee-cC--------CCCCeeeeEEcCcceeeEEe Q lcl|Aclame:pro 99 NIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILE-KG--------SDGTIEKFQVVSPYIFSKRY 169 (533) Q Consensus 99 ~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kii-d~--------~k~gI~elr~ldP~~ik~v~ 169 (533) |.-++ .++.+..-++.|++..++.+.+|.--++|..++...+ |+ +++.|..++.+||..+.+.. T Consensus 60 ----i~~~~---~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~~~ 132 (422) T protein:vir:10 60 ----IDGID---DEPAFWSRWDDLEMTQNINDAWSWARLFGGAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKVQT 132 (422) T ss_pred ----ccCCC---HHHHHHHHHHHhhHHHHHHHHHHhhccccceEEEEEecCCCCccccccccCceeeEEeeccccccchh Confidence 22221 1122333345688999999999988889987666655 31 34568899999999886542 Q ss_pred ---ec----cCcEEEEEecccceecccCCcccccCcccEEEEecCcccC-----cccccchhHHHH-HHHHHHHHHHHH- Q lcl|Aclame:pro 170 ---NP----ETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTN-----FFPYGRSYLESA-RAIWNQLRLMED- 235 (533) Q Consensus 170 ---d~----~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d-----~~~~g~s~L~~A-ik~~NqLrm~Ed- 235 (533) |+ +|+-.+|.++. .+++.+..+-+.++++|...-+.+ ...+|.|.|.++ ...+..+..... T Consensus 133 ~~~dp~s~~fg~P~~y~v~~-----~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~ 207 (422) T protein:vir:10 133 REENPRNARFGEPLTYRITT-----NESDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERL 207 (422) T ss_pred cccCccccccCcceEEEEec-----CCCCcceeeccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHH Confidence 21 12334444432 223344567788899985332211 123788988764 343333333333 Q ss_pred -HHHHHHHhccccceeeecCC-CCC-chhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCC Q lcl|Aclame:pro 236 -ALMLYRVVRSVDRRVFYVDV-GNV-PPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRR 312 (533) Q Consensus 236 -alVIyRi~RAPeRr~fyidv-Gnl-p~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~ 312 (533) +.++++-. -+++.++. .++ .... ....++.++....-+-+.+|.+..+.. T Consensus 208 ~~~l~~~~~----~~v~~~~~l~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~~~l~~~-------------------- 260 (422) T protein:vir:10 208 ATQLLKRKQ----QAVWKAKGLAELCDDSE---GFGAARLRLAQVDNNSGVGQAIGIDAE-------------------- 260 (422) T ss_pred HHHHHHHhc----cccccchhHHHhcCCcc---chHHHHHHHHHHHHhcCCccceeEecC-------------------- Confidence 66677743 44555553 221 1111 111112222211111222232221111 Q ss_pred cceee--ecCCCCCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHH-HHHHHhhhhhhc Q lcl|Aclame:pro 313 AVEID--ILQGSKVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGF-FVEELERMVRMN 389 (533) Q Consensus 313 gtEi~--TLpG~nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~-F~~~l~~qLilk 389 (533) +-+++ ..+-++|..+ +..|...+-.+.+||+.+|-..+..|.+++-.-|...|+.+|+++|.. +..+|.+- + + T Consensus 261 ~e~~e~~~~~lsgl~~~--~~~~~~~iaaa~~IP~t~L~G~s~~Glnatgd~d~~~yyd~i~~~Qe~~l~p~l~~l-~-~ 336 (422) T protein:vir:10 261 SEEYSVLNSDIGGIDAF--LDKKFDRIVALSGIHEIILKNKNVGGVSSSQNTALETFHKLVDRKRNAELLPILEFL-I-P 336 (422) T ss_pred CcceEEEecccCChHHH--HHHHHHHHHhhhCCCeeeeccCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H-H Confidence 11233 3333344444 899999999999999999976766666666666777799999999976 45555442 2 1 Q ss_pred cCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHH-HHHHhhhcccCCCCCcccc Q lcl|Aclame:pro 390 KEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQ-EEVAEAAGGGGLFDTGGFG 468 (533) Q Consensus 390 ~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q-~~~i~~E~~~~~~~~~~~~ 468 (533) -++-.++|+|.|++-..-+|...+|+...+.++++.+- + ..-++.++..+ -..+. ...++.+.. .+ T Consensus 337 ~i~~s~~~~~~f~pL~~~sekekaei~~~~a~a~~~~~---~-------~g~i~~~e~r~~L~~~~--~~~~~~~~~-~~ 403 (422) T protein:vir:10 337 FIVNAEEWSVEFNPLAQESSKDKAEILEKNVNSIAALI---A-------AGAMDIDEARDTLRTIA--PEVKINDGS-VE 403 (422) T ss_pred HhcccCCcEEEeCCCCCCCHHHHHHHHHHHHHHHHHHH---h-------cCCCCHHHHHHHhhhhc--ccccCCCCC-Cc Confidence 23445799999998888788888999888888887641 1 12223222211 11100 011111111 00 Q ss_pred cccchhhhcCccCCcccccCCCcccccCCCCCccCCCc Q lcl|Aclame:pro 469 EETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGE 506 (533) Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (533) ++... .....+|.+-|.+ + T Consensus 404 ~~~~~---~~~~~~~~~~~~~----------------d 422 (422) T protein:vir:10 404 TEVTI---SETSNDPLEVPTD----------------D 422 (422) T ss_pred cccch---hhcCCCCCCCCCC----------------C Confidence 00000 1111122222211 1 No 25 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=99.70 E-value=9.2e-16 Score=103.01 Aligned_cols=464 Identities=12% Similarity=0.104 Sum_probs=200.8 Q ss_pred CCCcc------hhhhhhhHHHHH--HhhcccccccCccc-------CCCCcccCCCCCcc-ccchh----hcccccCccc Q lcl|Aclame:pro 1 MPSLE------KYKKLNEAVNFT--NFLSPMYGMGAPHG-------AGGSSMIPINMYHP-FATAG----YASRFYGGIE 60 (533) Q Consensus 1 ~~~~~------~w~k~de~~~~~--~~~~~~~s~~~p~~-------~~gas~i~~~~~~~-~~~~~----~~~~~ygg~~ 60 (533) -|..+ ...+.+...... ...-.+.+...|.. .||-......+... ..+++ .+...|.... T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~Dgl~n~~~~lG~~~~~s~y~~~~~~~~~~~~~~ 133 (862) T protein:vir:99 54 NPIIRSVKDFPFVEISDSVNAKSVSGKNFAMDSAVRSAIKAITGFAMDDGGGAPVPIGAEGKQSSYAVPEALQDWYLSQG 133 (862) T ss_pred CCCCCcccccccccccccccchhhhhhhhcchhhcchhhhhhhhhhhhcchhhhhhccccccccccccchhccccccccC Confidence 12211 112222211111 11111111111100 01111111110000 00010 1112222222 Q ss_pred cchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHH---HHHHhhhHHHHHHHHHHHhh Q lcl|Aclame:pro 61 FNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSY---LDYVINIEKNAYPIIRNMIK 137 (533) Q Consensus 61 ~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~---i~~ll~f~~~~~e~~R~wyv 137 (533) ....+|...|+ .++.++.||+.++++|+ .++--+...-++-+...+..+. .++.|++..++.+.+|---+ T Consensus 134 f~gyql~alY~----~~~larkiVd~pAeDat---R~g~~I~~~~d~~e~~~e~~~~ie~~~~rL~v~~~l~eair~~RL 206 (862) T protein:vir:99 134 FIGHQACALIA----QHWLVDKACSLAGEDAI---RNGWHLKSLGEGEEIDEESLEKFKAIDVEFKVKENLIEFNRFKNV 206 (862) T ss_pred cccHHHHHHHH----hCchhhhhhhhhhHHHh---hCCceEeecCcccccCHHHHHHHHHHHHHhhHHHHHHHHHHhccc Confidence 34445555555 58999999999999998 4433333322222333333333 34556777777777776666 Q ss_pred cCceeEEEeec---C------------CCCCeeeeEEcCcceeeEEe------eccCcEEEEEecccceecccCCccccc Q lcl|Aclame:pro 138 YGDMFLHILEK---G------------SDGTIEKFQVVSPYIFSKRY------NPETDTWYYVITDVYRNVVSGYFNEDI 196 (533) Q Consensus 138 DGr~~~~kiid---~------------~k~gI~elr~ldP~~ik~v~------d~~g~~e~y~y~~~~~~~~~~~~~~~~ 196 (533) +|..+...+++ + .++.++.|+.|||..+.+.. |.. .-.||.. ..+..+ +..+ T Consensus 207 yGga~ililv~~~D~~~LsqPLn~e~I~kG~lkgl~vlDp~w~~p~~v~~~~~Dp~-sp~yGkP-~~y~I~-----g~~I 279 (862) T protein:vir:99 207 FGIRVAIFVVDSEDPDYYEKPFNPDGITPGSYRGISQIDPYWMMPMLTAESTADPS-SQFFYEP-EFWIIS-----GQKY 279 (862) T ss_pred ccceEEEEEecCcCchhhhcCcCcccccccceeEEEEechhhhccccccccccccc-ccccCCc-eeeeec-----Ceee Confidence 77754444332 1 12346788899988765422 211 1112211 011111 1245 Q ss_pred CcccEEEEecCcccCc-----ccccchhHHHHHHHHHHHHHHHH-----HHHHHHHhccccceeeecCCC-CCchhhHHH Q lcl|Aclame:pro 197 PEEDVIHFSHKIDTNF-----FPYGRSYLESARAIWNQLRLMED-----ALMLYRVVRSVDRRVFYVDVG-NVPPDKINE 265 (533) Q Consensus 197 ~~~dvi~~~~~~~~d~-----~~~g~s~L~~Aik~~NqLrm~Ed-----alVIyRi~RAPeRr~fyidvG-nlp~~kAeq 265 (533) -+.++++|...-+-+. .-.|+|.|+++ ++.|+-.+. +.++++.. -+++.++.. .+....+-. T Consensus 280 H~SRliif~g~~vpd~lk~ay~f~G~SvLe~i---yd~L~~~d~t~~saa~Ll~ka~----l~v~ktd~l~~l~~ed~l~ 352 (862) T protein:vir:99 280 HRSHLIIARGPQPADILKPTYIFGGIPLVQRI---YERVYAAERTANEAPLLAMNKR----TTAIHTDTAKAIANEDKFI 352 (862) T ss_pred ccceeEEecCCCchhhhhccCCccCccHHHHH---HHHHHHHHHHHHHHHHHHHHhc----cceeechhHhhhccHHHHH Confidence 5667777754333222 12689999985 455555544 56666633 344455443 233222211 Q ss_pred HHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeec--CCCCCChHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 266 YLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDIL--QGSKVDLAEDVEYMLNRLISALKV 343 (533) Q Consensus 266 y~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TL--pG~nlg~i~Dv~Yf~~kLy~aL~V 343 (533) .-..++++++++ .|-+..+ ++-+++++ +=++|..+ +..|.+.+-.+.+| T Consensus 353 ~r~~~~~~~rdN------~Gi~liD---------------------~eEe~e~ls~slSGL~dl--l~~~~q~IAaas~I 403 (862) T protein:vir:99 353 QRLMFWVRYRDN------HAVKVLG---------------------TDETMEQFDTSLADFDAV--IMGQYQLVASIAKT 403 (862) T ss_pred HHHHHHHhccCc------ceeEEec---------------------CCCceeEEecccCChHHH--HHHHHHHHHhhhCC Confidence 112334555432 2211101 11233333 22344333 89999999999999 Q ss_pred CeeeccCCCCccchhhhhHHHHHHHHHHHHHHHH-HHHHHhh--hhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHH Q lcl|Aclame:pro 344 PKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGF-FVEELER--MVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRI 420 (533) Q Consensus 344 P~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~-F~~~l~~--qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~ 420 (533) |+.+|-..+.-|.+++-.-|...|+.+|+++|.. +..+|++ .|+......+++|.|.|.+=.-=+|...+|++.... T Consensus 404 P~tiLfGqspaGlnATGE~D~~nYyD~I~s~QE~~L~P~LerL~~li~~~lg~~~d~~ieFnpL~~~sekEkAEi~kk~A 483 (862) T protein:vir:99 404 PATKLLGTAPKGFNSTGEFETISYHEELESIQEHVYMPFLQRHYLISRLSLGIQHEIDVVMEPVASMTAQQQADLNKTKA 483 (862) T ss_pred CceeecccCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceEEeCCCCCCCHHHHHHHHHHHH Confidence 9998865553444444444666699999999965 4454443 334333345688999999777777888888888888 Q ss_pred HHHHHhh--hhhhHHHHHHHHh--------cCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCC Q lcl|Aclame:pro 421 GIAERLK--GWVREDWIYSNIL--------QIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGR 490 (533) Q Consensus 421 ~~~~~~~--pyvgk~~i~k~il--------~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (533) ++++.+- .-++-+=++..+. .++++..++...+..+.... ..+......+.|... .++..+. T Consensus 484 ea~~~lv~sGvispdEvR~~L~~~~~~g~~~l~ded~E~d~~~~~e~~~~-~e~~g~a~~~ap~de-------~~aga~~ 555 (862) T protein:vir:99 484 EGGKVLIDGGVISPDEERNRIRDDKRSGYNRLTKEDAEETPGASPENLAA-YQKAGAAQETASAKE-------TQAGAAV 555 (862) T ss_pred HHHHHHHhcCCCCHHHHHHHHHhcCCcCCCCCCcccccccCCCCcccccc-cccCCcccccccccc-------cccccCC Confidence 8876641 1222222222110 11222222111111111100 001111111111100 0000000 Q ss_pred --cccccCCCC--CccCCCccCcCcccCCchhhcCCcccCCCCCC-CC Q lcl|Aclame:pro 491 --TEFDFGTEG--GEELGGELNLGGAFEEFEEETGGGEEELPFPE-EE 533 (533) Q Consensus 491 --~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~ 533 (533) -+.+.-.++ ....+|.+ . + +.+++ .+ ++|+ .+ T Consensus 556 ~~~e~d~~~~p~~~~~~~g~~---~-~-----~t~~~-~a-~~p~~~~ 592 (862) T protein:vir:99 556 TTAEGDQPNVQMVPSMKPGQM---V-G-----PEVGI-TA-PMPEDDA 592 (862) T ss_pred ccccCCcccccccCCCCCCCc---c-c-----ccccc-cc-CCCcccc Confidence 000000000 01112210 0 0 11111 11 2333 22 No 26 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=99.69 E-value=2.5e-15 Score=100.62 Aligned_cols=447 Identities=12% Similarity=0.085 Sum_probs=217.1 Q ss_pred HhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCC Q lcl|Aclame:pro 18 NFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNEN 97 (533) Q Consensus 18 ~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~ 97 (533) -|++.=...++|...+-.+.+. +....+ ...|... ++ ...-|..++.++|.|.+||+.|++.+= T Consensus 1 ~~~~~~~~~~~p~~~~~~~~~~----~~~~~~----~~~g~~~-~~--~~~~~~~~~~~~~~V~acV~~IA~~iA----- 64 (518) T protein:vir:78 1 MLLANGQTLSAPAMAELSPQMQ----DSYYYA----PAVGMQL-ER--QFSLYGGIYKNQPWVRTVIAKRAQALA----- 64 (518) T ss_pred CcccCceeeccchhhhhhhhhh----hccccc----ceeceec-cc--ccchhhHHhhhhHHHHHHHHHHHHhhc----- Confidence 4555555566665433322221 111110 0111111 11 123333455678999999999997643 Q ss_pred CceeeeecccccccHHHHHH-HHHH-------hhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEe Q lcl|Aclame:pro 98 GNIVDVVTKDIELAKAILSY-LDYV-------INIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRY 169 (533) Q Consensus 98 ~~~v~v~l~~~e~s~si~~~-i~~l-------l~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~ 169 (533) ..|+.+-.++-+...+..+. +..| +.-....+.++..+++.|+.|..++.+. ++.+.+|.+|+|.+|++.. T Consensus 65 ~lp~~l~~~~~~~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~-~G~~~~L~~l~p~~Vtv~~ 143 (518) T protein:vir:78 65 RLPVKCMFTSGDTETEEHDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNK-SGTPEKLMPMHPSRVAIKR 143 (518) T ss_pred cCceEEEEEcCCccccccchHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC-CCcEEEEEEECCCceEEEE Confidence 12222221111111111111 1222 2334567788888999999999987754 4568899999999999999 Q ss_pred eccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccce Q lcl|Aclame:pro 170 NPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRR 249 (533) Q Consensus 170 d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr 249 (533) +..+.+.+|.|.... +.++....+++.+|||+....+++. .+|+|-|..|.+.+.....+++...-+----+..+- T Consensus 144 ~~~~~~~~y~~~~~~---~~~~~~~~~~~~eIiHir~~~~dg~-~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~g 219 (518) T protein:vir:78 144 NSRTGRYEYYFQAGA---GVGTQLVSFADDEVVPIRFFNPDGL-ERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNL 219 (518) T ss_pred cCCCCEEEEEEEecC---CccceeEEecCCcEEEecCCCCCcc-cccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccE Confidence 988877777774332 2233445678899999986555543 489999999999988888888753333222233344 Q ss_pred eeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC--CCChH Q lcl|Aclame:pro 250 VFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--KVDLA 327 (533) Q Consensus 250 ~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--nlg~i 327 (533) ++.++ +.+-+..+++..+.+...|+ -..+.|.+. .|+ .|.+++.|.=. .+.-+ T Consensus 220 vl~~~-~~ls~e~~~~~k~~~~~~~~----G~~nag~~~----------vL~----------~G~~~~~l~~~~~d~q~l 274 (518) T protein:vir:78 220 VLRHE-KRLSPEAQQRLREQFDRAHA----GSSNTGKTM----------VVE----------EGMEPIPLQLTAVEMQFI 274 (518) T ss_pred EEecC-CCCCHHHHHHHHHHHHHHhc----CcccCCcee----------EcC----------CCceEEeccCChhHHHHH Confidence 44444 45555444444444433332 111223321 121 24455554211 22233 Q ss_pred HHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcH Q lcl|Aclame:pro 328 EDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNS 406 (533) Q Consensus 328 ~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~ 406 (533) +-.+|....+.+++|||...|+..++. ..+.+....+-|..+ |.-+..++++.|.+.|+..- +....+.|..+ T Consensus 275 e~r~~~~~eIa~afgVPp~~lg~~~~s-t~sn~e~~~~~f~~~tL~P~~~~ie~eln~~L~~~~---~~~~~~~fd~~-- 348 (518) T protein:vir:78 275 EARQLNREEVCGVYDIAPPIVHILDRA-TFSNISAQMRAFYRDTMAIPIARIQSAMDKYVGQYW---VRKNRMKFDID-- 348 (518) T ss_pred HHHHHHHHHHHHHhCCCHHHhccCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cCcceEEeech-- Confidence 445688899999999999999754332 223344444556664 66666777777776654221 11223444432 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHH---HhhhcccCCCCCcccccccchhhhc---Ccc Q lcl|Aclame:pro 407 IVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEV---AEAAGGGGLFDTGGFGEETTPADFL---GER 480 (533) Q Consensus 407 f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~---i~~E~~~~~~~~~~~~~~~~~~~~~---~~~ 480 (533) ++... -++.|.+++..+- +..-||..+.-.... ++.++.+..+-.. .+.|.... ... T Consensus 349 --~Llr~-D~~~r~~~~~~~~----------~~G~lT~NE~R~~~gl~pie~~~gD~~~v~~----n~~pl~~~~~~~~~ 411 (518) T protein:vir:78 349 --DVIQP-DWEAKSESTQKMV----------NSGVATPNEGREIMGLPRSDDPKADELYANS----ALQPLGATPDGAVE 411 (518) T ss_pred --hhhcc-CHHHHHHHHHHHH----------hCCCcCHHHHHHHhCCCCCCCCCCceeeecc----cceecccccccccC Confidence 22221 1234555544431 334456533222111 1111111111000 01111000 000 Q ss_pred CCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 481 GSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) +.....|+.+.+++.+..+..+.++.+-+.....-.....|-...+.+|+++- T Consensus 412 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (518) T protein:vir:78 412 GEEAPAPKRPASTPVASLDQSPPASVPGLSPTNSDRSTDSGKTEPRRLMQKPP 464 (518) T ss_pred CCCCCCCCCCCcccccccccCccccCCCCCcccccccccccccchhcccCCCC Confidence 11111222222222222222222333222222221223334444444444433 No 27 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=99.69 E-value=2.5e-15 Score=100.62 Aligned_cols=447 Identities=11% Similarity=0.069 Sum_probs=214.2 Q ss_pred HhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCC Q lcl|Aclame:pro 18 NFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNEN 97 (533) Q Consensus 18 ~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~ 97 (533) -|++.=-++++|....-.+.+. +..+.+ ...|-.. + .....|..++.++|-|.+||+.|++.+= T Consensus 1 ~~~~~~~~~~~p~~~e~~~~~~----~~~~~~----~~~~~~~-~--~~~~~~~~~a~~~~~V~acV~~IA~~iA----- 64 (518) T protein:vir:10 1 MLLANGQTLSAPAMAELSPQMQ----DSYYYA----PAVGMQL-E--RQFSLYGGIYKNQPWVRTVIAKRAQALA----- 64 (518) T ss_pred CcccCceeecCchhhhhhhhhh----cccccc----cccceec-c--cccchhhHHHhhhHHHHHHHHHHHHhhc----- Confidence 4555555556664333222221 111110 0001011 1 1133444566678999999999998742 Q ss_pred CceeeeecccccccHHHHHH-HHHH-------hhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEe Q lcl|Aclame:pro 98 GNIVDVVTKDIELAKAILSY-LDYV-------INIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRY 169 (533) Q Consensus 98 ~~~v~v~l~~~e~s~si~~~-i~~l-------l~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~ 169 (533) ..|+.+-.++.+-..+..+. +..| +.-....+.++..+++.|+.|..++.+. ++.+.+|.+|+|.+|++.. T Consensus 65 ~lpl~l~~~~~~~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~-~G~~~~L~~l~p~~v~v~~ 143 (518) T protein:vir:10 65 RLPVKCMFTSGDTETEESDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNK-SGTPEKLMPMHPSRVAIKR 143 (518) T ss_pred cCceEEEEEcCCCceeccchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECC-CCcEEEEEEECCCceEEEE Confidence 11222211111111111111 2222 2335577888889999999999887754 4568899999999999999 Q ss_pred eccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccce Q lcl|Aclame:pro 170 NPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRR 249 (533) Q Consensus 170 d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr 249 (533) +..+.+.+|.|.... +.+.....+++.+|+|+.....++. .+|+|-|..|.+.+.....+++...-+----+..+- T Consensus 144 ~~~~~~~~y~~~~~~---~~~~~~~~~~~~eViHir~~s~dg~-~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~g 219 (518) T protein:vir:10 144 NSRTGRYEYYFQAGA---GVGTQLVSFADDEVVPIRFFNPDGL-ERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNL 219 (518) T ss_pred cCCCCEEEEEEEecC---CccceEEEecCCcEEEecCCCCCcc-cccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccE Confidence 988777777775432 2223345678899999976555443 389999999999988888888753322212232333 Q ss_pred eeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC--CCChH Q lcl|Aclame:pro 250 VFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--KVDLA 327 (533) Q Consensus 250 ~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--nlg~i 327 (533) ++.++ +.+-+..+++-.+.+...|+ -..+.|.+. .|+ .|.+++.|.=. .+.-+ T Consensus 220 il~~~-~~ls~e~~~~~k~~~~~~~~----G~~nag~v~----------vL~----------~G~~~~~l~~s~~D~q~l 274 (518) T protein:vir:10 220 VLRHE-KRLSEAAQQRLREQFDRAHS----GSSNTGKTM----------VVE----------EGMEPIPLQLTAVEMQFI 274 (518) T ss_pred EEecC-CCCCHHHHHHHHHHHHHHhc----CccccCcce----------EcC----------CCceEEEccCChhHHHHH Confidence 43333 33444333333223333322 111223221 121 24455544211 22234 Q ss_pred HHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcH Q lcl|Aclame:pro 328 EDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNS 406 (533) Q Consensus 328 ~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~ 406 (533) +-.+|..+.+.+++|||...|+..++. ..+.+....+.|..+ |.-+..++.+.|.+.|+..- +..+.+.|..+. T Consensus 275 e~r~~~~~eIa~afgVPp~~lg~~~~~-t~sn~eq~~~~f~~~tL~P~l~~ie~~ln~~L~~~~---~~~~~~~fd~~~- 349 (518) T protein:vir:10 275 EARQLNREEVCGVYDIAPPIVHILDRA-TFSNISAQMRAFYRDTMAIPIARIQSAMDKYVGQYW---VRKNRMKFDIDD- 349 (518) T ss_pred HHHHHHHHHHHHHhCCCHHHhccCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cCCceEEEechh- Confidence 556788899999999999999753322 222333344456553 66666777777776664321 112334444322 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHH---HhhhcccCCCCCcccccccchhhhc---Ccc Q lcl|Aclame:pro 407 IVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEV---AEAAGGGGLFDTGGFGEETTPADFL---GER 480 (533) Q Consensus 407 f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~---i~~E~~~~~~~~~~~~~~~~~~~~~---~~~ 480 (533) +... -++.|.+++..+- +..-||..+.-.... ++.++.+..+-... +.|.... ... T Consensus 350 ---llr~-D~~~r~~~~~~~~----------~~G~lT~NE~R~~~Gl~pie~~~gD~~~~~~n----~~pl~~~~~~~~~ 411 (518) T protein:vir:10 350 ---VIQP-DWEAKSESTQKMV----------NSGVATPNEGREIMGLPRSDDPKADELYANSA----LQPLGATPDGAVE 411 (518) T ss_pred ---hhcc-CHHHHHHHHHHHH----------hCCCcCHHHHHHHhCCCCCCCCCCCeeeeccc----ceecccccccccC Confidence 2221 1234555544431 233455433211111 11111111110000 1111000 000 Q ss_pred CCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 481 GSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) +.....|..+..++.+..+..+.++.+.+.....-..+..|....+++|++.- T Consensus 412 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (518) T protein:vir:10 412 GEEAPAPKRPASTPVASLDQSPPTSVPGLSPTNSDRSTDSGKTEPRRLMQKPP 464 (518) T ss_pred CCCCCCCCCCCccccccccccccccCCCCCcccccccccccccchhccccCCC Confidence 11111122222222222223333333333222222233444444555555443 No 28 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.69 E-value=1.8e-16 Score=106.96 Aligned_cols=415 Identities=12% Similarity=0.103 Sum_probs=202.0 Q ss_pred hhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccC-ccccchHHHHHHHHHHhhcChhHHHHHH Q lcl|Aclame:pro 7 YKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYG-GIEFNRFFLYDMYDRMDYTDPLISTVLD 85 (533) Q Consensus 7 w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~yg-g~~~n~~~li~~YR~m~~~~PEV~~AId 85 (533) -.+.|++. +..+- .+.+.....+ .++..+.+....+.+.|+ ...-+ +...+.++..|+-++.||+ T Consensus 1 ~~~~~~a~-~~~~~--------~~a~~~~~~~-~~~g~~~~~d~~~~~~~~~~~~~~----~~~l~~lY~~~~l~r~iVd 66 (461) T protein:vir:80 1 MYSIDKAK-QAKID--------SKIVNRNDFM-VGHGKANSRDKLTRQTPGNGQKLD----LKACENLYASNSIAMNIVD 66 (461) T ss_pred Cccchhhh-hhhhh--------hhhhhhhHHH-hhcCCcchhhhhhccccCcccccC----HHHHHHHHHhCCccchhhc Confidence 22333333 11111 1111111112 111111000111112222 12224 3444445556899999999 Q ss_pred HhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEee-cCC-----------CCC Q lcl|Aclame:pro 86 IIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILE-KGS-----------DGT 153 (533) Q Consensus 86 ~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kii-d~~-----------k~g 153 (533) .++.+|+-.+ +.+..++.+..+. +....+.|++..++.+-+|.-.++|..+....+ +.. ... T Consensus 67 ~~a~d~~r~g-----~~i~~~~~~~~~~-~~~~~~~l~~~~~l~~~~~~~rl~G~a~i~i~v~d~~~~~~~~~~pl~~~~ 140 (461) T protein:vir:80 67 IISEDMVRAG-----WSLKTDNKEMKKN-IESKWRKLKTKDRFQKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKT 140 (461) T ss_pred cchHHhhcCC-----eeeecCCHHHHHH-HHHHHHHhhHHHHHHHHHHhhcccccEEEEEEeecCCccccCccCCccccc Confidence 9999998322 3344333222222 334455678999999999999999986655543 211 123 Q ss_pred eeeeEEcCc---ceee---EEee----ccCcEEEEEecccc------eecccCCcccccCcccEEEEecCcccCcccccc Q lcl|Aclame:pro 154 IEKFQVVSP---YIFS---KRYN----PETDTWYYVITDVY------RNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGR 217 (533) Q Consensus 154 I~elr~ldP---~~ik---~v~d----~~g~~e~y~y~~~~------~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~ 217 (533) +..+.+|+| ..|. ...| .+|.-.+|.++... ..+..+..+..+-+.+++||....+.+. -+|+ T Consensus 141 ~~~~~~l~~~~~~~i~~~~~~~dp~sp~fg~P~~y~i~~~~~~~~~~~~~~~~~~~~~iH~SRii~~~~~~~~~~-~~G~ 219 (461) T protein:vir:80 141 IKSIPYINTFNTQKVTQLYLNQDMFSEHFGEVEFFEVNRVSQLGEEILSGTTASTSEQIHRSRIIHEQGLRFEGE-TKGR 219 (461) T ss_pred ccceeEEEeccccccchhhhcccCcCcccccceEEEEeccccccccccccccCccceEEccccEEEecCCCCCcc-ccCc Confidence 444555544 3332 1222 22444566664432 1223455567788899999987776664 4799 Q ss_pred hhHHHHHHHHHHHHHHHH--HHHHHHHhccccceeeecCCC-CCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccc Q lcl|Aclame:pro 218 SYLESARAIWNQLRLMED--ALMLYRVVRSVDRRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYF 294 (533) Q Consensus 218 s~L~~Aik~~NqLrm~Ed--alVIyRi~RAPeRr~fyidvG-nlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~ 294 (533) |.|+++...+..+..... +.++++.. -.+|.++.- .+......+ +...+..++ +.+|-+..+.. T Consensus 220 S~le~~~~~l~~~~~~~~~~~~l~~~~~----~~v~k~~~l~~~~~~~~~~-~~~~~~~~~------~~~g~~~~d~~-- 286 (461) T protein:vir:80 220 SIFESLYDIITVMDTSLWSVGQILYDFA----FKVYKTDDIDALNKDDKAN-LTAMLDFMF------RTEALAIIKGD-- 286 (461) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhC----CCceecchHHhhhchHHHH-HHHHHHHhc------CCceEEEEcCC-- Confidence 999996655554444433 45555532 334444421 111111111 222233322 23332211111 Q ss_pred hhhhHHhhhhcccccCCCcceeeecCCCCCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 295 SIESILKDYFIPRRGDRRAVEIDILQGSKVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRI 374 (533) Q Consensus 295 n~~smleDywlprR~g~~gtEi~TLpG~nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rL 374 (533) ++ .|+-..+-|++..+ +..|...+-.+.+||+.+|-..+. |..++-.-|...|+.+|+++ T Consensus 287 ------e~-----------~e~~~~~lsgl~~~--l~~~~~~iaa~s~iP~t~L~G~s~-g~~asge~D~~~yyd~i~~~ 346 (461) T protein:vir:80 287 ------EQ-----------LTKESTNVSGMKDL--LDYGWDYLAGAVRMPKTVLKGQEA-GTLTGAQYDVMNYYARVSSI 346 (461) T ss_pred ------cc-----------eEEEecCcCCHHHH--HHHHHHHHhhhhcCCeeeeecccC-CccccchHHHHHHHHHHHHH Confidence 11 12222333344433 889999999999999999876665 33345555666799999999 Q ss_pred HHH-HHHHHhhh--hhh------ccCCCc--cceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCC Q lcl|Aclame:pro 375 QGF-FVEELERM--VRM------NKEFAD--QDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIP 443 (533) Q Consensus 375 r~~-F~~~l~~q--Lil------k~i~t~--eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~t 443 (533) |.. +...|++- +++ ...+.+ .+|.|.|..=.--+|...+|++..+.++++.+ + .. .-++ T Consensus 347 qe~~l~p~le~l~~~i~~s~~~~~~~~~p~~~~~~i~f~~L~~~s~kekAe~~~~~a~a~~~~---~-----~~--g~is 416 (461) T protein:vir:80 347 QENRLRPQLEYLTRLLMWASDDCGPSIDPDSFEWAIEFNPLWNLDSKTDAEVRKLTAEADQIY---I-----VN--GVLD 416 (461) T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHH---H-----hc--CCCC Confidence 965 44443321 121 123344 48999999887778888899999998887653 1 11 1234 Q ss_pred hhhhHHHHHHhhhc---ccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCc Q lcl|Aclame:pro 444 YDLKPQEEVAEAAG---GGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGE 501 (533) Q Consensus 444 de~~~q~~~i~~E~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (533) .++..+ ...+.. +.+.++..+.+ .-+ ..... .+.+.. .++++ T Consensus 417 ~~e~r~--~l~~~~~~~~~~~~~~~~~~--~~~---~~~~~--~~~~~~-------e~~~g 461 (461) T protein:vir:80 417 PDEVKE--TRFGRFGLENSSKFSGDSAE--IDK---LAKLV--YDAYAK-------KNADG 461 (461) T ss_pred HHHHHH--HHHHhcCCCCCccCCCCCch--hhh---hhhhc--cccccc-------cCCCC Confidence 333211 001100 00011100000 000 00000 001110 01111 No 29 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=99.67 E-value=1.9e-16 Score=106.76 Aligned_cols=392 Identities=11% Similarity=0.075 Sum_probs=204.4 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCc-cccchHHHHHHHHHHhhcChh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGG-IEFNRFFLYDMYDRMDYTDPL 79 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg-~~~n~~~li~~YR~m~~~~PE 79 (533) ||+++- |-- .+++ +....+..|+. .-++..++...|+ .|+. T Consensus 1 ~~~~~~----d~~---~~~~---------------------------~~~~~~~~~~~~~~~~~~~l~a~Y~----~~~l 42 (427) T protein:vir:10 1 MKIVKH----DGY---NDIF---------------------------NGGADGSPKPFFMSDASYHVGSFYN----DNAT 42 (427) T ss_pred CCcccc----chH---HHHh---------------------------hcCCCCcccCccccCchHHHHHHHH----cCch Confidence 222110 000 0000 00000111221 1224446666555 5899 Q ss_pred HHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecC---------C Q lcl|Aclame:pro 80 ISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKG---------S 150 (533) Q Consensus 80 V~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~---------~ 150 (533) ++.||+.++++|+-.... |.-. + .++.++.-.+.|++..++.+.+|.--++|..++...++. + T Consensus 43 ~~~~Vd~~aed~~r~g~~-----i~g~--~-~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~ 114 (427) T protein:vir:10 43 AKRIVDVIPEEMVTAGFK-----MSGV--K-DEKEFKSLWDSYKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKP 114 (427) T ss_pred hhhhhccchHHhhcCCcc-----ccCc--c-HHHHHHHHHHHhhHHHHHHHHHHhccccceeEEEEEecCCCccccccCC Confidence 999999999999944332 2222 1 122344445678899999999998889998776654431 3 Q ss_pred CCCeeeeEEcCcceeeEEeec-------cCcEEEEEecccceecccCCcccccCcccEEEEecCcccCc-----ccccch Q lcl|Aclame:pro 151 DGTIEKFQVVSPYIFSKRYNP-------ETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNF-----FPYGRS 218 (533) Q Consensus 151 k~gI~elr~ldP~~ik~v~d~-------~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~-----~~~g~s 218 (533) ++.|..+..+||..+.+.... +|+-++|.++. ..+....++-+.++++|...-+-+. ..+|.| T Consensus 115 ~g~l~~l~v~d~~~~~~~~~~~dp~s~~fg~P~~y~v~~-----~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S 189 (427) T protein:vir:10 115 GAKLEGVRVYDRFAITVEKRVTNARSPRYGEPEIYKVSP-----GDNMQPYLIHHSRVFIADGERVAQQARKQNQGWGAS 189 (427) T ss_pred CcceeEEEEechhcccccccccCccccccCcceEEEEec-----CCCCcceEEccccEEEecCCCchhhhcccCCcccch Confidence 567999999999887553211 12334444432 2233446777888999864332221 236888 Q ss_pred hHHHHHHHHHHHHHHHH-----HHHHHHHhccccceeeec-CCCCC-chhhHHHH-HH--HHHHHhhhceeeccCCCeee Q lcl|Aclame:pro 219 YLESARAIWNQLRLMED-----ALMLYRVVRSVDRRVFYV-DVGNV-PPDKINEY-LT--NIAMQYKRDYWVRNNQNQFL 288 (533) Q Consensus 219 ~L~~Aik~~NqLrm~Ed-----alVIyRi~RAPeRr~fyi-dvGnl-p~~kAeqy-~~--~im~~~knk~vyd~~tGei~ 288 (533) .|.+++ ++.|+-++. +.++|+-. -+++.+ ++.++ ....++.. .. ..+.+.| +.+|.+. T Consensus 190 ~l~~~~--~~~i~~~~~~~~~~~~l~~k~~----~~v~k~~~l~~~~~~~~~~~~~~~r~~~~~~~~------~~~~~~~ 257 (427) T protein:vir:10 190 VLNKSL--IDAICDYDYCESLATQILRRKQ----QAVWKVKGLAEMCDDDDAQYAARLRLAQVDDNS------GVGRAIG 257 (427) T ss_pred hhhHHH--HHHHHHHHHHHHHHHHHHHHhc----cccccchhHHHHhcCccchHHHHHHHHHHHHhc------Cccccee Confidence 887643 455555554 56677632 233334 22221 11111111 11 1111211 1122211 Q ss_pred cccccchhhhHHhhhhcccccCCCcceeeecCCCCCChHHH-HHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHH Q lcl|Aclame:pro 289 GIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLAED-VEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKF 367 (533) Q Consensus 289 d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i~D-v~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF 367 (533) .+. .+-+++++.- +|+-++| +..|...+-.+.+||+.+|-..+..|.+++-.-|...| T Consensus 258 l~~--------------------~~e~~e~~~~-~lsgl~~~~~~~~~~iaaa~~IP~t~L~G~sp~Glnstgd~D~~ny 316 (427) T protein:vir:10 258 IDA--------------------ETEEYDVLNS-DISGVPEFLSSKMDRIVSLSGIHEIIIKNKNVGGVSASQNTALETF 316 (427) T ss_pred eec--------------------CCCceeEEec-ccCChHHHHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHH Confidence 111 1112333311 2333333 89999999999999999997666666666666677779 Q ss_pred HHHHHHHHHH-HHHHHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhh Q lcl|Aclame:pro 368 NNTIKRIQGF-FVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDL 446 (533) Q Consensus 368 ~kfI~rLr~~-F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~ 446 (533) +.+|+++|.. +..+|++ |+ .-++-.++|+|.|++-..-+|...+||...+.++++.+-. .. =++.++ T Consensus 317 yd~i~~~Qe~~l~p~l~~-l~-~~i~~s~~~~~~f~pL~~~s~kEkaei~~~~a~a~~~~~~--------~g--vi~~~e 384 (427) T protein:vir:10 317 YKLVDRKREEDYRPLLEF-LL-PFIVDEEEWSIEFEPLSVPSKKEESEITKNNVESVTKAIT--------EQ--IIDLEE 384 (427) T ss_pred HHHHHHHHHHHHHHHHHH-HH-HHhhcCCCcEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHh--------cC--CCCHHH Confidence 9999999965 4555543 22 1234447999999988888899999999999888877422 11 133322 Q ss_pred hHH-HHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccC Q lcl|Aclame:pro 447 KPQ-EEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFG 496 (533) Q Consensus 447 ~~q-~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (533) ..+ -..+- ...++.+..+.+.+. .+....+ ++|.+++++|.. T Consensus 385 ~r~~L~~~~--~~~~~~~~~~~~~e~-----~~~~~e~-~p~~~e~~~d~~ 427 (427) T protein:vir:10 385 ARDTLRSIA--PEFKLKDGNNINIRE-----PEETTEP-EPGLGEKLEDEN 427 (427) T ss_pred HHHHHHhhh--ccccCCCCccccccc-----cchhcCC-CCCCCCCCCCCC Confidence 211 11111 111222222221111 1111111 233333333333 No 30 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.62 E-value=1.2e-14 Score=96.98 Aligned_cols=434 Identities=12% Similarity=0.061 Sum_probs=213.7 Q ss_pred HHhhcccccccCcc-------------cCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHH Q lcl|Aclame:pro 17 TNFLSPMYGMGAPH-------------GAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) Q Consensus 17 ~~~~~~~~s~~~p~-------------~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~A 83 (533) =++.+++-++-.|+ +.++++.-......+...+ .. .-...+...|..+-|.++.++|.+..| T Consensus 1 mn~~dr~i~~~sP~~~~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s-~~----~~~~~~~~~lr~RaRdl~rNn~~a~~a 75 (502) T protein:vir:79 1 MAILDDVIGVFSPGWKAARLRSRAVIQAYEAVKTTRTHKARRENRT-AD----QLSQYGAVSLREQARYLDNNHDLVIGV 75 (502) T ss_pred CchHhhHHhhcChHHHHHHHhhHHHHhhccccCcccccCCCCCCCC-hH----HHHHHHHHHHHHHHHHHHhcChHHHHH Confidence 23333333333222 1222221111000010000 00 011236778888899999999999999 Q ss_pred HHHhhceeeecCCCCceeeeeccccc----ccHHHHHHH---HH------HhhhHHHHHHHHHHHhhcCceeEEEeecCC Q lcl|Aclame:pro 84 LDIIADECTIPNENGNIVDVVTKDIE----LAKAILSYL---DY------VINIEKNAYPIIRNMIKYGDMFLHILEKGS 150 (533) Q Consensus 84 Id~Ivneaiv~d~~~~~v~v~l~~~e----~s~si~~~i---~~------ll~f~~~~~e~~R~wyvDGr~~~~kiid~~ 150 (533) |+.+++.+|.++-=-....++..+.. +.+.|...| ++ +++|..-..-.+|.|++||.+|..++.++. T Consensus 76 v~~~~~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~ 155 (502) T protein:vir:79 76 FDKLEERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMVSGRI 155 (502) T ss_pred HHHHHHhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEeeccc Confidence 99999999976411111122233333 333333332 22 467888888899999999999999887642 Q ss_pred ---CCCe---eeeEEcCcceee------------EEeeccCcEE-EEEecccceecccCCcccccCcccEEEEecCcccC Q lcl|Aclame:pro 151 ---DGTI---EKFQVVSPYIFS------------KRYNPETDTW-YYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTN 211 (533) Q Consensus 151 ---k~gI---~elr~ldP~~ik------------~v~d~~g~~e-~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d 211 (533) ++|. +.|+.|+|..|. +-+|..|... |+++... ...+.......+++++|+|+-.....+ T Consensus 156 ~~~~~g~~~~l~lq~iepd~l~~~~~~~~~i~~GVe~d~~Gr~~aY~i~~~h-Pgd~~~~~~~rvpA~~vlH~f~~~r~g 234 (502) T protein:vir:79 156 NSLTPSAGVHFWLEALEPDFIPMTSDESNRLNQGVFVDDWGRPEKYLVYKSR-PVSGRQMETKEVDAERMLHLKFVRRLH 234 (502) T ss_pred CccCCCcccceEEEEecchhcCCCCCCCCeeEeeeEECCCCceEEEEEeecC-CCCCcccceeEechhheEEeecccCCc Confidence 2222 478999998774 2234445543 4444321 111222344568889999997654333 Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeeccc Q lcl|Aclame:pro 212 FFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGID 291 (533) Q Consensus 212 ~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~ 291 (533) ...|+|.|+.+++.+++|...+||.+.-...-|- -+.+|...+=+..-.+. .+...++ T Consensus 235 -Q~RGis~lapvl~~l~~l~~~~dael~~a~i~A~--~~~fi~~~~~~~~~~~~--------------~~~~~~~----- 292 (502) T protein:vir:79 235 -QMRGTSLLSGVLIRLSALKEYEDSELTAARIAAA--LGMYIRKGDGQSYEPDG--------------NGSKENE----- 292 (502) T ss_pred -cccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhh--heeeeecCCCccccccc--------------CCCCCcc----- Confidence 2589999999999999999999999888877663 23334432200000000 0011110 Q ss_pred ccchhhhHHhhhhcc--c-ccCCCcceeeecCCC-CCChHHH-HHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHH Q lcl|Aclame:pro 292 NYFSIESILKDYFIP--R-RGDRRAVEIDILQGS-KVDLAED-VEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIK 366 (533) Q Consensus 292 ~~~n~~smleDywlp--r-R~g~~gtEi~TLpG~-nlg~i~D-v~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~k 366 (533) ...+| + | + ..-.-|.+|..+... .-+..+. ++...+.+-.+||||-.-|..+-+ ++-+++.-..+. T Consensus 293 ---~~~~l-~----pG~i~~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s-~nySs~R~~~~e 363 (502) T protein:vir:79 293 ---RELTI-Q----PGIIYDDLKPGEEIGMVKSDRPNPNLETFRNGQLRAVAAGSRLSFSSTARNYN-GTYSAQRQELVE 363 (502) T ss_pred ---ccccc-c----CCccccccCCCceeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccc-chHHHHHHHHHH Confidence 00111 0 0 0 001235666666432 2233333 666677789999999999987643 344455556777 Q ss_pred HHHHHHHHHHHHHHH--------HhhhhhhccCCCcc------ce-eEEe--cCCcHHHHHHHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 367 FNNTIKRIQGFFVEE--------LERMVRMNKEFADQ------DF-RLVM--NRSNSIVEGERFAVIEQRIGIAERLKGW 429 (533) Q Consensus 367 F~kfI~rLr~~F~~~--------l~~qLilk~i~t~e------ew-~~~f--~~dn~f~E~ke~ei~~~R~~~~~~~~py 429 (533) |-+.+.++|+.|..- +....+++|.+... .| ...| -.--+.-.+||+.-...+++. .. T Consensus 364 ~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~-----Gl 438 (502) T protein:vir:79 364 STDGYLILQDWFIGAVTRPMYRAWLKQAVASGVIRLPRDLDRSSLYTAVYSGPVMPWIDPVKEAEAWKIQIRG-----GA 438 (502) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhcceeeecCCccccChHHHHHHHHHHHHc-----CC Confidence 999999999876532 33456788877642 22 2222 333344456666554444431 11 Q ss_pred hhHHHHHHHHhcCChhhhHHHHH-HhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccC Q lcl|Aclame:pro 430 VREDWIYSNILQIPYDLKPQEEV-AEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELN 508 (533) Q Consensus 430 vgk~~i~k~il~~tde~~~q~~~-i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (533) -+..=+...-..=-++..+|.+. .+...+.++..+ .+|...+...+.....+++++ T Consensus 439 ~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~----------------~~~~~~~~~~~~~~~~~e~~~------- 495 (502) T protein:vir:79 439 ATESDWVRAGGRNPDDVKRRRKAEIDENRKLDLVFD----------------TDPASDKGGSSAATKRQEPQH------- 495 (502) T ss_pred CCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCC----------------CCCCCCCCCCCCCCCCCCCCC------- Confidence 11111111111111222232211 111111112110 111111111111111111111 Q ss_pred cCcccCCchhhcCCcccCCCCCCC Q lcl|Aclame:pro 509 LGGAFEEFEEETGGGEEELPFPEE 532 (533) Q Consensus 509 ~~~~~~~~~~~~g~~~~~~~~~~~ 532 (533) . ++. +|+ T Consensus 496 ----------~-~~~------~e~ 502 (502) T protein:vir:79 496 ----------T-DDQ------SEE 502 (502) T ss_pred ----------C-CCC------CCC Confidence 0 000 011 No 31 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=99.61 E-value=1.2e-14 Score=96.81 Aligned_cols=390 Identities=13% Similarity=0.089 Sum_probs=197.8 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccc-cchhhcccccCccccchHHHHHHHHHHhhcChh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPF-ATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPL 79 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~-~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PE 79 (533) |+-|++|++. .+.+..+ ++. .....++. .+..-|. + .+.++|. T Consensus 1 M~~f~~~~~~------------------------~~~~~~~--~~~~~~~~~~~~--~~~~v~~-------~-~al~~~~ 44 (397) T protein:vir:38 1 MPLLKLNKSH------------------------SQGFSLN--DPDWVNFLTGGE--AQKYVSA-------D-TALKNSD 44 (397) T ss_pred Ccchhhhhcc------------------------cCcccCC--chhhhhhhcCCc--CCceech-------H-HhhccHH Confidence 5555544221 1111111 110 00000010 0111121 1 2335799 Q ss_pred HHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHH----HHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCee Q lcl|Aclame:pro 80 ISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLD----YVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIE 155 (533) Q Consensus 80 V~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~----~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~ 155 (533) |.+||+.|++.+-.+.. .+ ++ .....+. ..+......+..++.++++|+.|..++.|. .+.+. T Consensus 45 V~~~v~~ia~~ia~~p~-----~~--~~-----~~~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~-~g~~~ 111 (397) T protein:vir:38 45 IFSLIMQLSGDLAMVRY-----TS--ES-----DRSQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHKNT-NGVDL 111 (397) T ss_pred HHHHHHHHHHHHhhCcc-----cc--cc-----cHHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEECC-CCcEE Confidence 99999999977643322 11 11 1111121 123456678889999999999999988764 45688 Q ss_pred eeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 KFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMED 235 (533) Q Consensus 156 elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed 235 (533) +|.+|||.+|++..+..|...+|.++... ...+....+++.+|+|+......+. .+|+|.|..|.+.+.....+++ T Consensus 112 ~l~~l~~~~v~i~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~eiih~~~~~~~~~-~~G~s~i~~~~~~i~~~~~~~~ 187 (397) T protein:vir:38 112 SWEYLRPSQVQPMLLQDGSGLIYNINFDE---PAIGYMENVPAADVIHIRLLSKNGG-KTGISPLSALINEQQIKDASNE 187 (397) T ss_pred EEEEEcCceeEEEEcCCCceEEEEEEecc---ccccceeEecCccEEEecCCCCCCc-cccccHHHHHHHHHHHHHHHHH Confidence 99999999999999999988777664321 2234445688999999987655543 4899999999999999888888 Q ss_pred HHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcce Q lcl|Aclame:pro 236 ALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVE 315 (533) Q Consensus 236 alVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtE 315 (533) ...-+----+...-++.++-+ +.+ .+.+-++..+..++ -.+++ |.+ + .+ ..|.+ T Consensus 188 ~~~~~f~ng~~~~~il~~~~~-~~~-e~~~~~~~~~~~~~---~~~n~-~~~---------~-vl----------~~g~~ 241 (397) T protein:vir:38 188 LTLKALKQSVTASAVLTIQKG-GLL-DAETRIARSKEISK---QIHNS-DGP---------V-VI----------DALED 241 (397) T ss_pred HHHHHHhccCCccEEEEeCCC-CCH-HHHHHHHHHHHHHh---ccccc-CCc---------e-ec----------CCCce Confidence 666444344444455555543 333 33444444443322 11211 111 1 11 13566 Q ss_pred eeecCCC-C-CChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC Q lcl|Aclame:pro 316 IDILQGS-K-VDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMVRMNKEFA 393 (533) Q Consensus 316 i~TLpG~-n-lg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qLilk~i~t 393 (533) ++.|.-. + +.-++=.++..+.+.+++|||...|+...+.. +.+.....-|..-|.-+...+.+.|.+.|. + T Consensus 242 ~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~--~~~e~~~~~~~~~l~P~~~~ie~~ln~~l~-----~ 314 (397) T protein:vir:38 242 YKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQGDQQ--SSITQISGQYAKSLNRYVQAIVGELNDKLH-----A 314 (397) T ss_pred EEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----C Confidence 6666422 2 32344578899999999999999998644322 233322333444455555666677766654 4 Q ss_pred ccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccch Q lcl|Aclame:pro 394 DQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTP 473 (533) Q Consensus 394 ~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~ 473 (533) +.+|++.|.-+- ..+.|.+.+..+ -+..-||.+|.-. .++..++.+.+ ..+ T Consensus 315 ~~~~~~~~~~~~---------d~~~~~~~~~~~----------~~~G~~t~nE~R~-----~lg~~p~~~~d-----~~~ 365 (397) T protein:vir:38 315 NISANIRFAIDA---------MGDQYASTISSS----------VKGGTIAGNQARF-----ILQNSGYLAKD-----LPD 365 (397) T ss_pred hhcccccccccC---------CHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCCCCCc-----ccc Confidence 445665554322 133444444332 1223456433211 12222211100 000 Q ss_pred hhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccCCCCCC Q lcl|Aclame:pro 474 ADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELPFPE 531 (533) Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 531 (533) .........+ .....||+. +. +..++...-|| T Consensus 366 ~~~~~~~~~~---------------~~~~~~g~~------~~-----~~~~e~~~~~~ 397 (397) T protein:vir:38 366 PEKEPQQAIQ---------------LIQQEGGEN------DG-----NNSDERGSDPE 397 (397) T ss_pred cccccccccc---------------ccccccCCC------CC-----CCCCCCCCCCC Confidence 0000000000 001111110 00 00011111122 No 32 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=99.60 E-value=3.7e-14 Score=94.23 Aligned_cols=435 Identities=13% Similarity=0.146 Sum_probs=207.3 Q ss_pred CCCcchh-------------------hhhhhHHHHHHhhcccccccCcccCC-------CCcccCCCCCccccchhhccc Q lcl|Aclame:pro 1 MPSLEKY-------------------KKLNEAVNFTNFLSPMYGMGAPHGAG-------GSSMIPINMYHPFATAGYASR 54 (533) Q Consensus 1 ~~~~~~w-------------------~k~de~~~~~~~~~~~~s~~~p~~~~-------gas~i~~~~~~~~~~~~~~~~ 54 (533) .|-|||. ++-.-.. ++.+..+.-.-.+|-..+ ..+.++ +.++| -+ T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-k~~i~~pfkkk~~~~~~d~f~~s~es~s~vt-sls~p-------da 110 (945) T protein:vir:10 40 YPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLK-KEKIIVPYNHQEPPFKFNLFEYSPESLMYLP-SISDP-------DA 110 (945) T ss_pred CCCcchhhhhhhhhccceeeeeeeeehhhhHHH-hhcccccccccccchhhhhhhccCccceecc-cccCc-------cc Confidence 3333331 1111101 222222211111111000 001111 00111 01 Q ss_pred ccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCceeeee--cccccccHH---H--HHHHHHHhh---- Q lcl|Aclame:pro 55 FYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNIVDVV--TKDIELAKA---I--LSYLDYVIN---- 123 (533) Q Consensus 55 ~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~--l~~~e~s~s---i--~~~i~~ll~---- 123 (533) + -.++-++.++...+-|.+||+.|++.+-- .|+.+- .++...... + ...+..+|+ T Consensus 111 f---------~~vnVs~~~AlknsaV~scI~~IA~sIAs-----LPlklYrr~edG~~~~~~kk~~~~hpL~~LL~rPNp 176 (945) T protein:vir:10 111 F---------FLINLFRKYRFNNDSKLIKVSEIPKKLTS-----KELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDP 176 (945) T ss_pred e---------eeehhhhhhhhccHHHHHHHHHHHhhhcc-----CceEEEEecccCcccccccccccchHHHHHHhCCCc Confidence 1 12334455666789999999999976431 122221 111000000 0 012233331 Q ss_pred -------hHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCcEEE-EEecccceecccCCcccc Q lcl|Aclame:pro 124 -------IEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDTWY-YVITDVYRNVVSGYFNED 195 (533) Q Consensus 124 -------f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~e~-y~y~~~~~~~~~~~~~~~ 195 (533) ++.-.+.+++.+++.|+.|..++.+. .+.+.+|.+|||.+|++..+..|...+ |++.. .+..... T Consensus 177 ~mT~~eFwqsFl~~Lv~dLLL~GNAYieIiRd~-~G~ii~L~pLdPs~Vti~~ddDG~~~y~Yv~~i------dG~~~~~ 249 (945) T protein:vir:10 177 YFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDE-QGNLVAITPVDGTTIKPILSEDTGIVVGYVQEV------DGAIVAH 249 (945) T ss_pred ccChhHHHHHHHHHHHHHHhhcCCeEEEEEECC-CCcEEEEEEECCcceEEEEcCCCcEEEEEEEec------CCceEEE Confidence 23455677889999999999988753 456889999999999999998887543 43322 2334456 Q ss_pred cCcccEEEEecCc-ccC-cccccchhHHHHHHHHHHHHHHHH-HHHHHHHhccccceeeecCCCCCchhh-----HHHHH Q lcl|Aclame:pro 196 IPEEDVIHFSHKI-DTN-FFPYGRSYLESARAIWNQLRLMED-ALMLYRVVRSVDRRVFYVDVGNVPPDK-----INEYL 267 (533) Q Consensus 196 ~~~~dvi~~~~~~-~~d-~~~~g~s~L~~Aik~~NqLrm~Ed-alVIyRi~RAPeRr~fyidvGnlp~~k-----Aeqy~ 267 (533) +++.++||+..+. .++ ...+|+|-|..|++.+.....+++ +.-.|+--.|..+-++.++.++....+ -++.+ T Consensus 250 v~a~DvIlhirn~s~DG~~~GyGlSPIeaa~~aI~~alAaek~aar~FskNGa~PsGILsvkg~~~~d~k~~~~LseEq~ 329 (945) T protein:vir:10 250 FDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQL 329 (945) T ss_pred ecCCceEEEeccCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecCccccccccccccCHHHH Confidence 7788988776433 232 235899999999988877776766 455555445666778887765321111 12222 Q ss_pred HHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCe Q lcl|Aclame:pro 268 TNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPK 345 (533) Q Consensus 268 ~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~ 345 (533) +.+...+++..--+++.+. + ++ ..|.+++.|.-. .+.-++-.+|..+.+.+++|||. T Consensus 330 erlKe~wee~~sG~NnG~p----------i-VL----------deGmef~pLs~s~~DaQfLEsrkfs~eeIArAFGVPP 388 (945) T protein:vir:10 330 ESIQRQLQAIMMGDYTQVP----------I-LS----------GGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSP 388 (945) T ss_pred HHHHHHHHHHhCCcccccc----------e-ec----------CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCH Confidence 2222222221111111111 1 12 235677777432 23334557788899999999999 Q ss_pred eeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 346 AFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAE 424 (533) Q Consensus 346 srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~ 424 (533) ..|+..++.+ .+.+..+..-|..+ +..+..++.+.|.+.|... .....|.|+|..+..-.. ..|.+++. T Consensus 389 ~lLG~~e~st-~SNiEqq~~~Fv~~tL~Pil~~IEqeLNrkLl~~--~eg~~i~fdFd~ldl~D~-------ksraEal~ 458 (945) T protein:vir:10 389 QDVGILEGSN-KATAEVMASLTKAKGLEPLMATISKGFDEVVSEF--RNEKDIKLWFKEDDLEKE-------RDWWNIIQ 458 (945) T ss_pred HHcccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccCceeEEEecchhccCH-------HHHHHHHH Confidence 9998544432 33455556667654 8888889998887765421 123457888877765322 34555544 Q ss_pred HhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccc------hhhhcCccCCcccccCCCcccccCCC Q lcl|Aclame:pro 425 RLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETT------PADFLGERGSPIESPRGRTEFDFGTE 498 (533) Q Consensus 425 ~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (533) .+ -+..-||..|.-.. ++-.++ ++-|.-.. |....+....+..+|. ..+...+ T Consensus 459 kl----------i~sGiLTiNEvRe~-----lGLpPI---eGGD~lli~~nn~~P~d~~~ka~~ga~p~q---~aq~~~d 517 (945) T protein:vir:10 459 GQ----------LNTGFRSINEARME-----KGLEPV---PWGDVPFSGLRNWKPEDEQAKAQQGAMPPQ---LAQAMAD 517 (945) T ss_pred HH----------HhCCCcCHHHHHHH-----hCCCCC---CCcceeeeccccccccccccccccCCCCcc---cccCCCC Confidence 42 12344665332221 222222 22111111 1111111111100000 0000010 Q ss_pred CCccCCCccCcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 499 GGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) .+.+.||+ .++.-+-|.+. T Consensus 518 qp~~kGGe----------------~dEns~~psE~ 536 (945) T protein:vir:10 518 QPSQQGGG----------------VDENSSVPSEQ 536 (945) T ss_pred CCCCCCCC----------------CCCCCCCCCcc Confidence 11111111 11111222222 No 33 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.60 E-value=1.6e-14 Score=96.26 Aligned_cols=467 Identities=13% Similarity=0.100 Sum_probs=233.6 Q ss_pred HHhhcccccccCcc-------------cCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHH Q lcl|Aclame:pro 17 TNFLSPMYGMGAPH-------------GAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) Q Consensus 17 ~~~~~~~~s~~~p~-------------~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~A 83 (533) =++.+++.++-.|. +.+|++.-......+...+ ... -...+...|..+-|.++.++|.+..| T Consensus 1 Mn~iDr~i~~~sP~~a~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s-~~~----~i~~~~~~lr~RaRdL~rNn~~a~~a 75 (548) T protein:vir:95 1 MNLIDRLLEPLAPELVARRLAAREAIQAYEAARPGRTHKAKRQPLG-ADT----SLQKSAVSMREQCRKLDEDHDLVTGL 75 (548) T ss_pred CchHHhHhhhcchHHHHHHHHhHHHhccccccCccccccccCCCCC-hHH----HHHHHHHHHHHHHHHHHhcChHHHHH Confidence 22222222222221 1233332111111110000 000 01235677889999999999999999 Q ss_pred HHHhhceeeec-CCCCceeeeeccc---ccccHHHHHHH---HH------HhhhHHHHHHHHHHHhhcCceeEEEeecCC Q lcl|Aclame:pro 84 LDIIADECTIP-NENGNIVDVVTKD---IELAKAILSYL---DY------VINIEKNAYPIIRNMIKYGDMFLHILEKGS 150 (533) Q Consensus 84 Id~Ivneaiv~-d~~~~~v~v~l~~---~e~s~si~~~i---~~------ll~f~~~~~e~~R~wyvDGr~~~~kiid~~ 150 (533) |+.+++-+|.+ +..-.|.-+..+. .++.+.|...| ++ +++|..-..-.+|.|++||.+|..+..++. T Consensus 76 v~~~~~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~~~~~~~ 155 (548) T protein:vir:95 76 LDRLEERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQKLMGRV 155 (548) T ss_pred HHHHHHhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEEeeeccc Confidence 99999999974 3333332222221 23444443333 22 467888888899999999999998887654 Q ss_pred CC---Ce---eeeEEcCcceeeEEee-------------ccCcE-EEEEec--ccceec-ccCCcccccCcccEEEEecC Q lcl|Aclame:pro 151 DG---TI---EKFQVVSPYIFSKRYN-------------PETDT-WYYVIT--DVYRNV-VSGYFNEDIPEEDVIHFSHK 207 (533) Q Consensus 151 k~---gI---~elr~ldP~~ik~v~d-------------~~g~~-e~y~y~--~~~~~~-~~~~~~~~~~~~dvi~~~~~ 207 (533) .+ |. +.|+.|+|..|.--.+ ..|.. .|+++. ++.... +.......+++++|+|+-.. T Consensus 156 ~~~~~g~~~~~~lqliepd~l~~~~~~~~~~i~~GIE~D~~Grp~aY~i~~~hPgd~~~~~~~~~~~rvpA~~VlHif~~ 235 (548) T protein:vir:95 156 PNYTFATSVPFALELLEPDYLPFSYNNLSKGIVQGIERDTWRRKRAYHLLKDHPGNLQTLGGSLAVKRVEAERIIHIAYR 235 (548) T ss_pred ccccCCcccceEEEEechhhcCCCCCCCCCceeeeeEECCCCceEEEEEeecCCCcccccccccceeeechhHheecccc Confidence 32 32 4789999987742222 22222 344443 332222 22233456788999998765 Q ss_pred cccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCee Q lcl|Aclame:pro 208 IDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQF 287 (533) Q Consensus 208 ~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei 287 (533) .-.+ ...|+|.|+.+++.+++|...+||.++-...-| --+.+|..++ |.....+ .. -+..+..+ T Consensus 236 ~r~g-Q~RGvs~lapvl~~l~~l~~y~dael~~aki~A--~~a~fi~~~~-~~~~~~~-------~~-----~~~~~~~~ 299 (548) T protein:vir:95 236 KRIG-QNRGVPMLHAVLIRLADLKDYEESERVAARISA--ALAMYIKKGN-PDSYTVE-------PG-----KDRKNRTI 299 (548) T ss_pred cCCc-cccCcchHHHHHHHHHHHhHHHHHHHHHHHHhh--hheeeeecCC-CccccCC-------CC-----cccccccc Confidence 4332 358999999999999999999999988887766 3344555432 1100000 00 00001111 Q ss_pred ecccccchhhhHHhhhhcccccCCCcceeeecCCC-CCChHHH-HHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHH Q lcl|Aclame:pro 288 LGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAED-VEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDI 365 (533) Q Consensus 288 ~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~D-v~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~ 365 (533) .-.. .|.=++ | .-|.+|..+.-. .-+..++ ++-..+.+-.+||||-+-|..+-+ ++-+++.-..+ T Consensus 300 ~~~p------G~iv~~-L-----~pGe~i~~~~p~~p~~~~~~f~~~~lr~IAaglGipYe~ltgD~s-~nYSS~R~~l~ 366 (548) T protein:vir:95 300 PIAP------GMVFDD-L-----EPGEDVGMIESNRPNPFLEGFRNGQLRMIGAGTRSTYSSVSRAYD-GTYSAQRQELV 366 (548) T ss_pred cccC------Cccccc-c-----CCCceeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccc-hhHHHHHHHHH Confidence 0000 010000 0 124455554322 1223333 555666688899999999997654 34455555777 Q ss_pred HHHHHHHHHHHHHHHHH--------hhhhhhccCCCc------cce-eEEec--CCcHHHHHHHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 366 KFNNTIKRIQGFFVEEL--------ERMVRMNKEFAD------QDF-RLVMN--RSNSIVEGERFAVIEQRIGIAERLKG 428 (533) Q Consensus 366 kF~kfI~rLr~~F~~~l--------~~qLilk~i~t~------eew-~~~f~--~dn~f~E~ke~ei~~~R~~~~~~~~p 428 (533) .|-+.+.++|..|..-| ....+++|.+.. ..| ...|. .--+.-.+||+.-...+++. . T Consensus 367 e~~r~~~~~q~~~i~~~~~Pi~~~wle~a~l~G~i~lP~~~~~~~~~~~~W~~P~~~~iDP~Kea~A~~~~i~~-----G 441 (548) T protein:vir:95 367 EGWLGYDLLQHEFIDYWCRPVYRSWLQMYLLARKERLPADVDHRTLYAAVYQGPVMPWINPMHEANAWELLVKA-----G 441 (548) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCCCCchhheeeeeecCCccccChHHHHHHHHHHHHc-----C Confidence 79999999998765332 234567887653 222 23333 33445566776665555442 1 Q ss_pred hhhHHHHHHHHhcCChhhhHHHHH-HhhhcccCCCCCcccccccchhhhcCccCCcccccC------------CCccccc Q lcl|Aclame:pro 429 WVREDWIYSNILQIPYDLKPQEEV-AEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPR------------GRTEFDF 495 (533) Q Consensus 429 yvgk~~i~k~il~~tde~~~q~~~-i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 495 (533) .-+..=+...-..=-++..+|.+. .+.-.+-++.-...-.. . ......+|.+.++ ..-++.- T Consensus 442 l~T~~~~~a~~G~D~~ev~~q~a~E~~~~~~~GL~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (548) T protein:vir:95 442 FADEAEVARARGRDPRELKKSRETEIKANRAAGLVFSSDAYH--Q---LVKSGMDPVEAVQKVYLGVGKMLTADEARELV 516 (548) T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCCCCcccc--c---ccccccCCCCchhhhccccccccccchhHHhh Confidence 111111111111111222333211 11111122221111000 0 0111222222221 1111111 Q ss_pred CCCCCccCCCccCcCcccCCchhhcCCcccCCCCCCC Q lcl|Aclame:pro 496 GTEGGEELGGELNLGGAFEEFEEETGGGEEELPFPEE 532 (533) Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 532 (533) +-.|. .+.+-|.+-+.++.+||+.-.|.-|.. T Consensus 517 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (548) T protein:vir:95 517 NRYGA-----GLPVPGPDFPNESNNGGADGQPSNPDP 548 (548) T ss_pred ccCCC-----CCcCCCCCCCcccccCCCCCCCCCCCC Confidence 11111 134555555666677777666655555 No 34 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=99.58 E-value=7.2e-14 Score=92.63 Aligned_cols=422 Identities=14% Similarity=0.074 Sum_probs=206.3 Q ss_pred hhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCcccc-chhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHH Q lcl|Aclame:pro 8 KKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFA-TAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDI 86 (533) Q Consensus 8 ~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~-~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~ 86 (533) +|.--......+++.+.+. -.+|.+..++.. .+......+.|..-+ .. .+...|-|.+||+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~---------~g~~~s~~~~~~~~~~~~~~~~~g~~v~-------~~-~al~~~~v~~ci~~ 63 (437) T protein:vir:10 1 MKQGKQRALGRIKSSFLKW---------LGVPISLTDGSFWSAWGGMGSSSGETVT-------AD-SALQLSAVWSCVRL 63 (437) T ss_pred CCcchhhhhhhhHHhhhhh---------cCCcccCCchhHHHhhcccccCCCceec-------hH-hhhccHHHHHHHHH Confidence 2222122222222222221 112223222211 111111111122111 11 23467999999999 Q ss_pred hhceeeecCCCCceeeeeccccccc--HHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeee Q lcl|Aclame:pro 87 IADECTIPNENGNIVDVVTKDIELA--KAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEK 156 (533) Q Consensus 87 Ivneaiv~d~~~~~v~v~l~~~e~s--~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~e 156 (533) |++.+=.. |+.+--.+.+-. ...-..+..+| .-....+.++..+++.|+.|..++.+ .+.+.+ T Consensus 64 Ia~~ia~l-----p~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~--~g~~~~ 136 (437) T protein:vir:10 64 IAETIATL-----PLNLYQTKPDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRS--AGVLIG 136 (437) T ss_pred HHHHHhhC-----ceeEEEEcCCCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEec--CCcEEE Confidence 99864211 111110000000 00011223333 34567788889999999999887765 367889 Q ss_pred eEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 FQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDA 236 (533) Q Consensus 157 lr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Eda 236 (533) |..|+|.+|.+.++..+...|+ |... .+....+++++|+|+.+...++ .+|+|-|..|.+.+.....+++. T Consensus 137 L~~l~p~~v~i~~~~~g~~~y~-~~~~------~g~~~~~~~~dIih~r~~~~d~--~~G~spi~~~~~~i~~~~~~~~~ 207 (437) T protein:vir:10 137 LELMLPQRTTVKRLTSGALQYT-YRNV------DGTVSTLAEDDVFHVRGFSLDG--LMGLTPIQYAREVLGNSTAANKT 207 (437) T ss_pred EEEEcCcceEEEECCCCeEEEE-EEec------CceEEEEccccEEEecCcCCCC--cccccHHHHHHHHHHHHHHHHHH Confidence 9999999999988877654443 3221 2334568899999997544443 58999999999999988888875 Q ss_pred HHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCccee Q lcl|Aclame:pro 237 LMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEI 316 (533) Q Consensus 237 lVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi 316 (533) ..-+----+-.+-++.++ +.+.+.++++..+.+..+|.. -.+.|.+ -++ ..|+++ T Consensus 208 ~~~~f~ng~~p~gil~~~-~~l~~e~~~~~~~~~~~~~~g----~~nag~~----------~vl----------~~g~~~ 262 (437) T protein:vir:10 208 SASVFRNGLRPSGVLSTD-QILQKEKRAEIRTDLAEQFGG----AMQAGKT----------MVL----------EAGMKY 262 (437) T ss_pred HHHHHhccCCccEEEEcC-CCCCHHHHHHHHHHHHHHhcC----ccccCcc----------eec----------cCCceE Confidence 444333334344444444 467777776666666555431 0112222 112 124566 Q ss_pred eecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCc-cchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCC Q lcl|Aclame:pro 317 DILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDV-NAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEF 392 (533) Q Consensus 317 ~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~-gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~ 392 (533) +-|.-. .+.-++-.+|-.+.+.+++|||...|+...+. ..++.+....+.|..+ |.-+-.++.+.|.+.|+..+.. T Consensus 263 ~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~kll~~~e~ 342 (437) T protein:vir:10 263 QAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSEKSTSWGTGIEQQTLGFLTFTLRPWLTRIEQAARRSLLRPGER 342 (437) T ss_pred EeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc Confidence 655321 22223445577889999999999999854432 2223444445556654 5555667777777777654422 Q ss_pred CccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccc Q lcl|Aclame:pro 393 ADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETT 472 (533) Q Consensus 393 t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~ 472 (533) . .+.+.|..+. +.... ++.|.+++..+- +..-||..|.-. .++-.++. +.++-.. T Consensus 343 ~--~~~~~fd~~~----ll~~d-~~~r~~~~~~~~----------~~G~~T~NE~R~-----~~gl~pi~---gg~~~~~ 397 (437) T protein:vir:10 343 D--QFYAEFSVEG----LLRAD-SAGRAAFYSTMT----------QNGLMTRDECRA-----KENLPPMG---GNAAVLT 397 (437) T ss_pred C--ceEEEEechh----hhccC-HHHHHHHHHHHH----------hCCCcCHHHHHH-----HhCCCCCC---CCcceEe Confidence 1 2335554333 32221 455666554431 224456433211 22332222 1111110 Q ss_pred hhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCccc Q lcl|Aclame:pro 473 PADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEE 525 (533) Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 525 (533) . .....|++.. .+.....+++..+++....++..+|-.|+ T Consensus 398 ~----~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 437 (437) T protein:vir:10 398 V----QSALLPIDKL---------GEHTTATAAQDALKAWLYQEEKTRATQER 437 (437) T ss_pred e----cCcccchhhc---------cCcCCCcchhccccccCCCCCCCCccccC Confidence 0 0001111110 00001111111222323333333333333 No 35 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=99.57 E-value=4.9e-14 Score=93.54 Aligned_cols=470 Identities=10% Similarity=0.097 Sum_probs=208.5 Q ss_pred CCCcchhhhhhhHHHHHHhhccccc-------------ccCcccCCCCcccCCCCCccccchhhcccccC--ccccchHH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYG-------------MGAPHGAGGSSMIPINMYHPFATAGYASRFYG--GIEFNRFF 65 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s-------------~~~p~~~~gas~i~~~~~~~~~~~~~~~~~yg--g~~~n~~~ 65 (533) |--|+..++ +.+..+.+-+.+.+ .+.-|+.++.+.... .+.--+...+.+|+ ....+..+ T Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~a~~---~~~~~~~~~~~~~~~r~~~~~~~~ 79 (551) T protein:vir:80 5 LGLFESIRL--VGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYS---QPVIGSMSANPGFKTKPSIRNNQD 79 (551) T ss_pred hhhHHHhhh--ccCChhhcccccccccceeeecccccHHHHHHhhccCcceee---cccccceecCcccccCccccChhH Confidence 333333331 01111111111111 112223333222210 01000111122222 12233333 Q ss_pred HHHHHHHHhhcChhHHHHHHHhhceeee------cCCCCceeeeecccc--cccHHH------HHHHHHHhh-------- Q lcl|Aclame:pro 66 LYDMYDRMDYTDPLISTVLDIIADECTI------PNENGNIVDVVTKDI--ELAKAI------LSYLDYVIN-------- 123 (533) Q Consensus 66 li~~YR~m~~~~PEV~~AId~Ivneaiv------~d~~~~~v~v~l~~~--e~s~si------~~~i~~ll~-------- 123 (533) |-+-.+..+ ..|-|..||+.|++.+-. ...++.+..|.+++. +.+... ...|++..+ T Consensus 80 l~~~~~~~~-~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p~~~ 158 (551) T protein:vir:80 80 LHGVLKKFG-GNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRD 158 (551) T ss_pred HHHHHHHhh-cCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHHHHHhcCCCCCCccc Confidence 333333333 369999999999986332 233445555555432 222222 122333222 Q ss_pred -hHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCcE-----EEEEecccceecccCCcccccC Q lcl|Aclame:pro 124 -IEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDT-----WYYVITDVYRNVVSGYFNEDIP 197 (533) Q Consensus 124 -f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~-----e~y~y~~~~~~~~~~~~~~~~~ 197 (533) +...++.+++..++.|+.|+.++.|. .+-+.+|.+|||.+|+++.+..|.. .|+.+.. +.....++ T Consensus 159 s~~~f~~~lv~dlll~Gnay~~i~rd~-~G~~~~L~~l~p~~V~v~~~~~g~~~~~~~~y~~~~~-------g~~~~~~~ 230 (551) T protein:vir:80 159 SFSSFVKKIVRDTYMYDQVNFEKVFNR-NQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVID-------QKIVATFN 230 (551) T ss_pred hHHHHHHHHHHHHHhcCCEEEEEEECC-CCcEEEEEEeCCceeEEEECCccccccCceEEEEEeC-------CcEEEEEc Confidence 33456667778889999999888764 4569999999999999999888742 3333211 23344678 Q ss_pred cccEEEEecCcccC--cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCC-CCchhhHHHHHHHHHHHh Q lcl|Aclame:pro 198 EEDVIHFSHKIDTN--FFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVG-NVPPDKINEYLTNIAMQY 274 (533) Q Consensus 198 ~~dvi~~~~~~~~d--~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvG-nlp~~kAeqy~~~im~~~ 274 (533) ++++||+......+ .+.||+|-|..|+..+.....++....-+----+-.+-++.++.. ++-...++...+.+...| T Consensus 231 ~~eiiH~~~n~~~~~~~~~~G~spi~~a~~~i~~~~a~~~~~~~~f~Ng~~p~giL~~~~~~~lt~e~~~~lk~~~~~~~ 310 (551) T protein:vir:80 231 AREMAFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSL 310 (551) T ss_pred ccceEEecccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEcCCCCCCHHHHHHHHHHHHHHh Confidence 89999998654443 246899999999999999988888554333222333444555543 455444444444444443 Q ss_pred hhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCC Q lcl|Aclame:pro 275 KRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEG 352 (533) Q Consensus 275 knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~ 352 (533) . -..+.|.+ + ++. +.|.++..|... .+.-++-.+|..+.+.++.+||...|+..+ T Consensus 311 ~----G~~nag~~---------~-vl~---------~~g~~~~~l~~~~~D~qfle~~~~~~~~Ia~aFgVPp~~lG~~~ 367 (551) T protein:vir:80 311 S----GINGSWQI---------P-VVS---------AEDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPN 367 (551) T ss_pred c----CccccCcc---------c-ccc---------CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhcCCHHHcCccc Confidence 2 01112221 1 110 124566655321 122234466788899999999999998643 Q ss_pred C---cc-c-----hhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 353 D---VN-A-----KNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGI 422 (533) Q Consensus 353 ~---~g-r-----~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~ 422 (533) . ++ . .+.+.-....|.. -+.-+..++.+.|-+.|+..- ...+.|.|.....-.+. +|..+ T Consensus 368 ~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~L~~~~---~~~~~f~f~~~~~~~~~-------~~~~~ 437 (551) T protein:vir:80 368 NGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEF---GDKYTFQFVGGDIKSEL-------ESVKI 437 (551) T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---CCceEEEeeccChhhHH-------HHHHH Confidence 2 11 1 1223333344544 467777788888877765321 23566777755543322 22222 Q ss_pred HHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhh--hcccCCCCCc------ccccccchhhhcCccCCcccccCCCcccc Q lcl|Aclame:pro 423 AERLKGWVREDWIYSNILQIPYDLKPQEEVAEA--AGGGGLFDTG------GFGEETTPADFLGERGSPIESPRGRTEFD 494 (533) Q Consensus 423 ~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~--E~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (533) ...+. + .-||..+.=....... |+.+..+... ....+..+. ...+......+...+..+ T Consensus 438 ~~~~~----------~-g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 504 (551) T protein:vir:80 438 LAEKA----------K-VAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFE--HEKQQSNLQMLQEQTGNR 504 (551) T ss_pred HHHHh----------c-CCcCHHHHHHHhCCCCCCCCCceeecccccccccccccccCcc--hhhhhhccccccCcCCCC Confidence 21110 1 1244322211111110 1111000000 000000000 000000000011111111 Q ss_pred cCCCCCccCCCc-----c----CcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 495 FGTEGGEELGGE-----L----NLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 495 ~~~~~~~~~~~~-----~----~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) .+++++.++.+. . .+++......-.+|+.. -+|+.- T Consensus 505 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 549 (551) T protein:vir:80 505 VSTDVEDIPDGKDTTGDIGKDGQRKDKDNANAGKQGMKG---DKPNDW 549 (551) T ss_pred CCCCCCCCCCccccCCCccccccccCccccchhhhhcCC---CCcccc Confidence 111111111110 0 01111111111111111 222222 No 36 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=99.56 E-value=3.7e-13 Score=88.74 Aligned_cols=485 Identities=11% Similarity=0.086 Sum_probs=216.0 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhc-ccccC-----ccccchHHHHHHHHHHh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYA-SRFYG-----GIEFNRFFLYDMYDRMD 74 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~-~~~yg-----g~~~n~~~li~~YR~m~ 74 (533) .++-.+.. .|-+.+..++.+. +-..+|...|...- ...|+.-.+.+ .+++. --.++...+.+.|- T Consensus 21 ~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~a---~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~--- 91 (576) T protein:vir:96 21 IIDTVPID-DGLQANIRNIEEK--SKELNKSLYGKQQA---YAEPFLEVMDTNPEFRTKRSYMKNSDNLHDVLKQFG--- 91 (576) T ss_pred chhhhhcc-cChhHHHHHhhhh--hhhhccccCCccch---hhcceeeeeecCCCccccCcchhhhhhhHHHHHHhh--- Confidence 44444442 2444444444332 22334444443211 11222111111 11111 11123233333332 Q ss_pred hcChhHHHHHHHhhceee----e--cCCCCceeeeeccccc--ccHHHHHH------HHH-H--------hhhHHHHHHH Q lcl|Aclame:pro 75 YTDPLISTVLDIIADECT----I--PNENGNIVDVVTKDIE--LAKAILSY------LDY-V--------INIEKNAYPI 131 (533) Q Consensus 75 ~~~PEV~~AId~Ivneai----v--~d~~~~~v~v~l~~~e--~s~si~~~------i~~-l--------l~f~~~~~e~ 131 (533) ..|-|..+|+.|++.+- + ...++....|.+.+.. .++.-... ++. + +.+....+.+ T Consensus 92 -~npiv~~~I~~ia~~vA~~~~~~~~~~~~~~~~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~l 170 (576) T protein:vir:96 92 -NNPILNAIILTRSNQVAMYCQPSRYNERGLGFEVRMRDLDAEPGKKEKEEIKRIENFILNTGRDKDIDRDSFQSFCRKI 170 (576) T ss_pred -cCHHHHHHHHHHHHHHHhhhhhhhhccccccceeEEecCcCccchhhhHhhhhHHhhHhhccCCCCCccccHHHHHHHH Confidence 35889999999987632 2 2333333444443332 23222222 111 1 1345677888 Q ss_pred HHHHhhcCceeEEEeecCC-CCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCccc Q lcl|Aclame:pro 132 IRNMIKYGDMFLHILEKGS-DGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDT 210 (533) Q Consensus 132 ~R~wyvDGr~~~~kiid~~-k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~ 210 (533) ++.+++.|+.|..++.+.. .+.+.+|.+|||.+|+++.+..|...++.+ .+.....+.....++++++||+..+... T Consensus 171 v~dlll~Gna~~~i~~~rd~~g~~~~L~pl~p~~V~v~~~~dg~~~~~~~--~~~~~~~~~~~~~~~~~dii~~~~~~~~ 248 (576) T protein:vir:96 171 VRDTYTYDQVNFEKVFNKKNATTMDKFIAVDPSTIFYATDKNGKIIKGGK--RFVQVINKKVVASFTSREMAMGIRNPRT 248 (576) T ss_pred HHHHHhcCCeEEEEEEecCCCCceEEEEEeCCceeEEEECCCCceeeeee--EEEEecCCceEEEecccceEEEeecCCC Confidence 8899999999999887643 344899999999999999999886533211 1111122344456778899988755443 Q ss_pred C--cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCC-CCchhhHHHHHHHHHHHhhhceeeccCCCee Q lcl|Aclame:pro 211 N--FFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQF 287 (533) Q Consensus 211 d--~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvG-nlp~~kAeqy~~~im~~~knk~vyd~~tGei 287 (533) | .+.||+|-|+.|.+.+.....++....-+=---+-.+-++.++.+ .+.+..+++-.+.+...|+ -..+.|.+ T Consensus 249 d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lr~~~~~~~~----G~~nag~~ 324 (576) T protein:vir:96 249 ELSSSGYGLSEVEIAMKQFIAYNNTETFNDRFFSHGGTTRGILQIKSEQQQSQRALENFKREWKSSFS----GINGSWQV 324 (576) T ss_pred CcccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhc----cccccccc Confidence 3 256999999999999988888877544332233444556666654 4555555544444444442 11111221 Q ss_pred ecccccchhhhHHhhhhcccccCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCc---c------- Q lcl|Aclame:pro 288 LGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDV---N------- 355 (533) Q Consensus 288 ~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~---g------- 355 (533) .-+|+ .|.+++.|.-. .+.-++-.+|..+.+.++++||...|+..... | T Consensus 325 ---------p~vl~----------~G~~~~~ls~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s~ 385 (576) T protein:vir:96 325 ---------PVVMA----------DDIKFVNMTPTANDMQFEKWLTYLINIISALYGIDPAEIGFPNRGGATGGKGGNTL 385 (576) T ss_pred ---------eeecC----------CCceEEeccCChhhHHHHHHHHHhHHHHHHHhCCCHHHcccccccccccccccccc Confidence 11121 24666666322 23334557788999999999999999864321 1 Q ss_pred chhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHH Q lcl|Aclame:pro 356 AKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDW 434 (533) Q Consensus 356 r~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~ 434 (533) ..+.+.-..+.|.+ -+.-+..++.+.|...|+..- ...+.+.|.+...-++.....+.... ..+++.-.= T Consensus 386 t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~---~~~~~~~f~r~d~~~~~e~~~~~~~~------~~G~lT~NE 456 (576) T protein:vir:96 386 NEADPGKKQQQSQNKGLQPLLRFIEDLINTHIISEY---SDKYVFQFVGGDTKSELDKIKILQEE------VKTYKTVNE 456 (576) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhc---cCceEEEeccCCHHHHHHHHHHHHHH------hcCccCHHH Confidence 11223333334555 366666778888887776321 23456777777653332222221111 012221111 Q ss_pred HHHHHhcCCh----hhh-H--HHHHHhhhcccCCCCCcccccccchhhhcCccCCc--------ccccCCCcccccCCCC Q lcl|Aclame:pro 435 IYSNILQIPY----DLK-P--QEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSP--------IESPRGRTEFDFGTEG 499 (533) Q Consensus 435 i~k~il~~td----e~~-~--q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 499 (533) ++. ++-+.. |+. . .-..+......+-...+.......+..+....++| -+.+.+.+..+.+-.+ T Consensus 457 ~R~-~~gl~piegGD~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~g~~~~~~~~~~ 535 (576) T protein:vir:96 457 ARK-EKGLKPIEGGDVLLDGSFIQSMSLNTQKEQYEDTKQKERFDMIQQFLNSPDDEEPQQESTEDKVDGRESNDPTKID 535 (576) T ss_pred HHH-HhCCCCCCCcceeccccccccccccccCCCCCCccccccccccccccCCCCCCCCCCCCCCCcccccccccCCCCC Confidence 111 111111 000 0 00000000000000000000000000000011111 1111111111111111 Q ss_pred CccCCCccCcCcccCCchhhcCCcccCC-------CCCCCC Q lcl|Aclame:pro 500 GEELGGELNLGGAFEEFEEETGGGEEEL-------PFPEEE 533 (533) Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~ 533 (533) +. .|-+-.+++..+... +++++.-- .-|..- T Consensus 536 ~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 573 (576) T protein:vir:96 536 SP-VGTDGQLKDQDNVKS--QEGSNKGQGTKGKGNEKPSDF 573 (576) T ss_pred Cc-cccccccCCCCcccc--cccccccccccccCCCCcccc Confidence 10 122222222222211 11111000 011111 No 37 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=99.56 E-value=4.8e-14 Score=93.61 Aligned_cols=476 Identities=11% Similarity=0.098 Sum_probs=201.9 Q ss_pred CCCcchhhhh-----------hhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccC--ccccchHHHH Q lcl|Aclame:pro 1 MPSLEKYKKL-----------NEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYG--GIEFNRFFLY 67 (533) Q Consensus 1 ~~~~~~w~k~-----------de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~yg--g~~~n~~~li 67 (533) |--|+...|. +..+...--|.++...+.-|+.++.... ...+.--....+..|+ +...+..+|- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 77 (547) T protein:vir:63 1 MGLFESIRLAGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVA---YSQPVIGSMSANPGFKTKPSIRNNQDLH 77 (547) T ss_pred CchhhhhhhhcCCccccccccccccccchhhhhhhHHHHHHhhcccchh---hhchhhheeecccccccCCccCChhHHH Confidence 3333333331 1111111111122111222232331111 1122100011111122 1223332222 Q ss_pred HHHHHHhhcChhHHHHHHHhhceeee------cCCCCceeeeeccc--ccccHHH------HHHHHHHhh---------h Q lcl|Aclame:pro 68 DMYDRMDYTDPLISTVLDIIADECTI------PNENGNIVDVVTKD--IELAKAI------LSYLDYVIN---------I 124 (533) Q Consensus 68 ~~YR~m~~~~PEV~~AId~Ivneaiv------~d~~~~~v~v~l~~--~e~s~si------~~~i~~ll~---------f 124 (533) + .-+.+...|-|..||+.|++-+-+ ...++....+.+++ .+...+. .+.|+...+ + T Consensus 78 ~-l~~~~~~npiv~~~I~~~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s~ 156 (547) T protein:vir:63 78 G-VLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSF 156 (547) T ss_pred H-HHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccchH Confidence 2 112223459999999999986332 12223333444432 1222222 222333322 3 Q ss_pred HHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCcE-----EEEEecccceecccCCcccccCcc Q lcl|Aclame:pro 125 EKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDT-----WYYVITDVYRNVVSGYFNEDIPEE 199 (533) Q Consensus 125 ~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~-----e~y~y~~~~~~~~~~~~~~~~~~~ 199 (533) ...++.+++.+++.|+.|+.++.|. .+-+.+|.+|||.+|+++.+..+.. .|+.+.. +.....++++ T Consensus 157 ~~f~~~lv~d~ll~Gn~~~~i~rd~-~G~~~~L~~l~p~~V~~~~~~~g~~~~~~~~y~~~~~-------~~~~~~~~~~ 228 (547) T protein:vir:63 157 SSFVKKIVRDTYMYDQVNFEKVFNR-NQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVID-------QKIVATFNAR 228 (547) T ss_pred HHHHHHHHHHHHhhCCEEEEEEECC-CCcEEEEEEecCceeEEEECCccccccCceEEEEEcC-------CcEEEEeccc Confidence 3466667778889999999888764 4559999999999999998877642 3333211 2334567889 Q ss_pred cEEEEecCcccCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCC-CCchhhHHHHHHHHHHHhhh Q lcl|Aclame:pro 200 DVIHFSHKIDTNF--FPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVG-NVPPDKINEYLTNIAMQYKR 276 (533) Q Consensus 200 dvi~~~~~~~~d~--~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvG-nlp~~kAeqy~~~im~~~kn 276 (533) ++||+......+. +.||+|-|..|++.+.....++....-+=---+-.+-++.++.. ++-+...+...+.+...|. T Consensus 229 eiih~r~n~~~~~~~~~~G~Spi~~~~~~i~~~~~a~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~- 307 (547) T protein:vir:63 229 EMAFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLS- 307 (547) T ss_pred cEEEecccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhc- Confidence 9999987555442 46899999999999998888887544333222333445555544 3443333333333333332 Q ss_pred ceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCCh---HHHHHHHHHHHHHhcCCCeeeccCCCC Q lcl|Aclame:pro 277 DYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDL---AEDVEYMLNRLISALKVPKAFIGYEGD 353 (533) Q Consensus 277 k~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~---i~Dv~Yf~~kLy~aL~VP~srl~~~~~ 353 (533) -..+.|.+ + ++. +.|.++..|.. +..+ ++-.+|..+.+.++.+||...|+..+. T Consensus 308 ---G~~nagk~---------~-vl~---------~~g~~~~~l~~-~~~d~qfle~~~~~~~~Ia~afgVPP~~lG~~~~ 364 (547) T protein:vir:63 308 ---GINGSWQI---------P-VVS---------AEDVKFVNMTP-SARDMEFEKWLNYLINVISALYGIDPAEINIPNN 364 (547) T ss_pred ---Cccccccc---------c-ccc---------CCCceEEEcCC-ChhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccc Confidence 00112221 1 111 12445555532 2222 333566778999999999999986432 Q ss_pred c----cc-----hhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 354 V----NA-----KNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIA 423 (533) Q Consensus 354 ~----gr-----~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~ 423 (533) - +. .+.+.-....|.. -+.-+..++.+.|.+.|+..- ...|.|.|.....-.+.. |..+. T Consensus 365 ~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~~~~ie~~ln~~L~~~~---~~~~~~~f~~~~~~~~~~-------~~~~~ 434 (547) T protein:vir:63 365 GGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEF---GDKYTFQFVGGDIKSELE-------SVKIL 434 (547) T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---CCceEEEeeccccccHHH-------HHHHH Confidence 1 11 1223333334544 467777888888888776321 235677776554422221 21111 Q ss_pred HHhhhhhhHHHHHHHHhcCChhhhHHHHHHhh--hcccCCCCCcc---cccccchhhh-cCccCCcccccCCCcccccCC Q lcl|Aclame:pro 424 ERLKGWVREDWIYSNILQIPYDLKPQEEVAEA--AGGGGLFDTGG---FGEETTPADF-LGERGSPIESPRGRTEFDFGT 497 (533) Q Consensus 424 ~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~--E~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 497 (533) ..+ .+ .-||..|.-....... |+.+..+.... .+........ ..........+......+.++ T Consensus 435 ~~~----------~~-g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (547) T protein:vir:63 435 AEK----------AK-VAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNRVST 503 (547) T ss_pred HHH----------hC-CCcCHHHHHHHhCCCCCCCCCceeecccccccccccccccCCccccchhhccccccccCCCCCC Confidence 110 00 1234322211111110 11000000000 0000000000 000000000001111111111 Q ss_pred CCCccCCCccCcC--cccCCchhhcC--CcccCC--CCCCCC Q lcl|Aclame:pro 498 EGGEELGGELNLG--GAFEEFEEETG--GGEEEL--PFPEEE 533 (533) Q Consensus 498 ~~~~~~~~~~~~~--~~~~~~~~~~g--~~~~~~--~~~~~~ 533 (533) +++..+.+.-+-+ +.+...++.+| .+.+.. -+|+.- T Consensus 504 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 545 (547) T protein:vir:63 504 DVEDIPDGKDTTGDIGKDGQRKDKDNANAGKQGMKGDKPNDW 545 (547) T ss_pred CCCCCCCCcccCCCcCccccccCccccchhhhhcCCCCcccc Confidence 1111111100000 01111111111 000000 122222 No 38 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=99.56 E-value=3.9e-13 Score=88.64 Aligned_cols=411 Identities=12% Similarity=0.121 Sum_probs=202.9 Q ss_pred HHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCC Q lcl|Aclame:pro 17 TNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNE 96 (533) Q Consensus 17 ~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~ 96 (533) =.++.++|+|... . .+..+..+...+.......... .+..-|. +.+.++|-|.++|+.|++.+=.. T Consensus 1 M~~~~~~f~~~~r--~-~~~~~~~~~~~~~~~~~~g~~~-~~~~v~~--------~~al~~~~v~~~i~~ia~~ia~l-- 66 (429) T protein:vir:10 1 MDSVKKFFNFEKR--Q-TSQVIELNKDDEKLLEWLGISP-STISVKG--------KNALKVATVFACIKILSESVSKL-- 66 (429) T ss_pred Cchhhhhhccccc--C-cccccccCCChHHHHHHhcCCC-Ccceech--------hhhhccHHHHHHHHHHHHhhccC-- Confidence 2233444555321 1 1122333222221111111100 0111111 12345789999999999764422 Q ss_pred CCceeeeecccccccH-HHHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeE Q lcl|Aclame:pro 97 NGNIVDVVTKDIELAK-AILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSK 167 (533) Q Consensus 97 ~~~~v~v~l~~~e~s~-si~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~ 167 (533) |+.+-.++-.-.. .....+..+|+ -....+..++.+++.|+.|..++.|. .+.+.+|..|||.+|.+ T Consensus 67 ---~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-~G~~~~L~~i~~~~v~v 142 (429) T protein:vir:10 67 ---PLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDR-KGKVQALWPIDASKVTV 142 (429) T ss_pred ---ceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECC-CCcEEEEEEEcCceeEE Confidence 2222211111111 11122344443 34577888899999999999988764 45588999999999999 Q ss_pred EeeccCcE-----EEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 168 RYNPETDT-----WYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRV 242 (533) Q Consensus 168 v~d~~g~~-----e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi 242 (533) ..+..+.. -+|.+. .++....+++++|||+.+....+ +-+|+|.|..|.+.+.....++....-+-- T Consensus 143 ~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~evih~~~~~~~~-~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ 214 (429) T protein:vir:10 143 YIDDVGLLNSKTKMWYVVN-------TGGQQRVLKPEEILHFKNGITLD-GLVGVPTMEYLKSTLENSASADKFINNFYK 214 (429) T ss_pred EEcCcccccccceEEEEEc-------cCCeEEEEccccEEEecCCCCCC-CcccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99876542 233332 23445568899999998755443 358999999999999999888886555533 Q ss_pred hccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC- Q lcl|Aclame:pro 243 VRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG- 321 (533) Q Consensus 243 ~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG- 321 (533) --+..+-++.++ +.+.+.++++..+.+...|.. .+ +.|.+ + .++ .|++++.|.= T Consensus 215 ng~~~~~il~~~-~~l~~e~~~~~~~~~~~~~~g---~~-n~~~~---------~-vl~----------~g~~~~~l~~~ 269 (429) T protein:vir:10 215 QGLQVKGLVQYV-GDLNEDAKKVFRENFESMSSG---LQ-NSHRI---------A-LMP----------VGYQFQPISLN 269 (429) T ss_pred ccCCccEEEEcC-CCCCHHHHHHHHHHHHHHhcc---cc-ccCce---------e-ecC----------CCceEEEccCC Confidence 333334444443 456666666555555444321 11 12222 1 111 2455555531 Q ss_pred -CCCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccceeE Q lcl|Aclame:pro 322 -SKVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFRL 399 (533) Q Consensus 322 -~nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~~ 399 (533) ..+.-++-.++..+.+.+++|||.+.|+..... ..+.+.-+.+.|.+ .|.-+-..+.+.|.+.|+.+.... ..+.+ T Consensus 270 ~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~-~g~~~ 347 (429) T protein:vir:10 270 MSDAQFLENTELTIRQIATAFGIKMHQLNDLSKA-TLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELD-KGFYS 347 (429) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcC-CCcEE Confidence 122223445677899999999999999753332 22334444444554 455566667777777666443221 22345 Q ss_pred EecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCc Q lcl|Aclame:pro 400 VMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGE 479 (533) Q Consensus 400 ~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~ 479 (533) .|..+.. ... -+..|.+++..+- +..-||.+|.-. .++ ++|-++.|+-..+. T Consensus 348 ~fd~~~l----l~~-d~~~~~~~~~~~~----------~~G~~T~NE~R~-----~~g---l~p~~ggD~~~~~~----- 399 (429) T protein:vir:10 348 KFNVDAI----LRA-DIKTRYEAYRTGI----------QGGFLKPNEARS-----KED---LPPEAGGDRLLVNG----- 399 (429) T ss_pred Eeechhh----hcC-CHHHHHHHHHHHH----------hCCCcCHHHHHH-----HhC---CCCCCCcCeeeecc----- Confidence 5554432 111 1233444444321 334566533311 112 22322333222221 Q ss_pred cCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcC-Ccc Q lcl|Aclame:pro 480 RGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETG-GGE 524 (533) Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~ 524 (533) -..|++..... ...||+-|- .....| -|+ T Consensus 400 n~~~~d~~~~~----------~~k~g~~~~------~~~~~~~e~~ 429 (429) T protein:vir:10 400 NMLPIDMAGQA----------YLKGGDTNG------EVSKEGNEGN 429 (429) T ss_pred cccchhhcccc----------ccCCCCCCC------CCCCCCCCCC Confidence 11111111000 001111000 000000 011 No 39 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=99.55 E-value=2e-13 Score=90.23 Aligned_cols=452 Identities=12% Similarity=0.118 Sum_probs=206.9 Q ss_pred CCCcchhhhh----hhHHHHHHhhcccccccCcccCCCCcc---------------cCCCCCccccchh-hcccccC-cc Q lcl|Aclame:pro 1 MPSLEKYKKL----NEAVNFTNFLSPMYGMGAPHGAGGSSM---------------IPINMYHPFATAG-YASRFYG-GI 59 (533) Q Consensus 1 ~~~~~~w~k~----de~~~~~~~~~~~~s~~~p~~~~gas~---------------i~~~~~~~~~~~~-~~~~~yg-g~ 59 (533) || +|-.. .-.-..+-.++-.+++...+.+.-+.- ..+....++.... .+++|+. +. T Consensus 1 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (574) T protein:vir:80 1 MP---KWLDKALGIEKSSIEETRNMENYKMHLREIDTNVVNNEPYSMESIEKGMNGKTTAYMQPIIGEMSVNPGYKTKPS 77 (574) T ss_pred Cc---chhhhhhccchhhHHHHHhhhhhccccchhhhhhhhccCCCHHHHHHhHhhhcccccchhhhhccccccccCcCc Confidence 55 34211 111112222233333322221111110 1111122221111 1122222 22 Q ss_pred ccchHHHHHHHHHHhhcChhHHHHHHHhhceeee------cCCCCceeeeeccccc--ccHHHH---HHHHHHh------ Q lcl|Aclame:pro 60 EFNRFFLYDMYDRMDYTDPLISTVLDIIADECTI------PNENGNIVDVVTKDIE--LAKAIL---SYLDYVI------ 122 (533) Q Consensus 60 ~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv------~d~~~~~v~v~l~~~e--~s~si~---~~i~~ll------ 122 (533) ..|...+-+..+... ..|-|..||+.+++-+-. .+....|..|.+++.+ .+.... ..+.++| T Consensus 78 ~~~~~~~~~~l~~~~-~~~iv~~~i~~~~~~V~~~~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~ 156 (574) T protein:vir:80 78 IRNSQDLHKTLKKFG-NNIILNAIINTRSNQVSMYCKPARNSETGVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQF 156 (574) T ss_pred cCCcccHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccCCCccchhhhhhhHHHHHHhccCCC Confidence 233323323333333 358899999998875322 1334556666655432 222221 1233333 Q ss_pred ------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCc-----EEEEEecccceecccCC Q lcl|Aclame:pro 123 ------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETD-----TWYYVITDVYRNVVSGY 191 (533) Q Consensus 123 ------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~-----~e~y~y~~~~~~~~~~~ 191 (533) .+....+.+++.+++.|+.|+.++.+. .+-|.+|.+|||.+|+++.+..+. ..||.+.. +. T Consensus 157 ~nP~~~s~~ef~~~lv~~lll~Gnayi~i~r~~-~G~~~~L~pl~p~~V~v~~d~~~~~~~~~~~y~~~~~-------g~ 228 (574) T protein:vir:80 157 RDPNRDNFTTFCKKLVRATYMYDQVNFEKVFDK-DGNFIKFDTVDPTTIFLATNGEGKLIKNGERFVQVID-------NR 228 (574) T ss_pred CCCccccHHHHHHHHHHHHHhcCCeEEEEEECC-CCcEEEEEEEcCceeEEEEcCccccccCceEEEEEeC-------Cc Confidence 234567788889999999999988764 466999999999999999887663 23444422 33 Q ss_pred cccccCcccEEEEecCcccC--cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCC-CchhhHHHHHH Q lcl|Aclame:pro 192 FNEDIPEEDVIHFSHKIDTN--FFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGN-VPPDKINEYLT 268 (533) Q Consensus 192 ~~~~~~~~dvi~~~~~~~~d--~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGn-lp~~kAeqy~~ 268 (533) ....+++.++||+..+...+ .+.||+|-|..|+..+.....+++...-+=---+-.+-++.++.+. |-+..++ -++ T Consensus 229 ~~~~~~~~eiih~~~~~~~~~~~~~~G~spi~~a~~~i~~~~~a~~~~~~~f~ng~~p~gil~~~~~~~ls~e~~~-~lk 307 (574) T protein:vir:80 229 IVAKFNERELAFAVRNPRADIEVGQYGYPELEIALKQFIAHENTEVFNDRFFSHGGTTRGILHVKTGQQQSQQALD-IFR 307 (574) T ss_pred eEEEEccccEEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHH-HHH Confidence 44567889999998644333 2469999999999999988888885443332334445566666654 3333333 333 Q ss_pred HHHH-HhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCe Q lcl|Aclame:pro 269 NIAM-QYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPK 345 (533) Q Consensus 269 ~im~-~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~ 345 (533) +.++ .|. --...|.+ -+++ +.|.++.-|.-. .+.-++-.+|..+.+.++.+||. T Consensus 308 ~~~~~~~~----G~~n~g~~----------~vl~---------~~G~~~~~l~~s~~D~qfle~~~~~~~~Ia~afgVPp 364 (574) T protein:vir:80 308 REWRSSLA----GINGSWQI----------PVVS---------AEDVKFVNMTPSANDMQFEKWLNYLINVISALYGIDP 364 (574) T ss_pred HHHHHHhc----cccccccc----------eeec---------CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCH Confidence 3332 221 01112221 1221 124566655322 12223446778899999999999 Q ss_pred eeccCCCC--c-cch------hhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcHHHHHHHHHH Q lcl|Aclame:pro 346 AFIGYEGD--V-NAK------NTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAV 415 (533) Q Consensus 346 srl~~~~~--~-gr~------~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei 415 (533) ..|+..+. + |.+ +.+....+.|..+ +.-+..++.+.|-+.|+.. . ...+.|.|.....-. T Consensus 365 ~~lG~~~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~--~-~~~~~~~f~~~d~~~------- 434 (574) T protein:vir:80 365 AEINFPNNGGATGSKGGSLNEGNSKEKMQASQNKGLQPLLRFIEDTVNTYIVAE--F-GEKYQFQFRGGDLSA------- 434 (574) T ss_pred HHhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--c-CCceEEEecccchhh------- Confidence 99986543 1 111 2222333445554 6667777888888777632 1 233466676554321 Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCccccc Q lcl|Aclame:pro 416 IEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDF 495 (533) Q Consensus 416 ~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (533) |.+....+. + + +-.-||..+.=.. ++-.++ ++-|.=..+ ....|+..+... .. T Consensus 435 ---~~~~~~~~~-~-----~--~~G~lT~NE~R~~-----lgl~Pi---~gGD~~~~~-----~n~~~~~~~~~~---~~ 487 (574) T protein:vir:80 435 ---QLDKLKIIE-Q-----E--GKVFRTVNEIRHD-----KGLEPI---KGGDVILNG-----VHIQAIGQALQE---EQ 487 (574) T ss_pred ---HHHHHHHHH-H-----H--hCCccCHHHHHHH-----hCCCCC---CCCCEeeec-----cceeeccccccc---cc Confidence 111111100 1 1 1234564332211 111122 111111111 000111000000 00 Q ss_pred CCCCCccCCCccCcCcccCCchhhcCCcccCCCCCCC-----------------C Q lcl|Aclame:pro 496 GTEGGEELGGELNLGGAFEEFEEETGGGEEELPFPEE-----------------E 533 (533) Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------------~ 533 (533) + ..+ +-++...+...+.|+..+.++.++. + T Consensus 488 ~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~ 534 (574) T protein:vir:80 488 L--EYQ------RSQDRLNRLLELSGGDVEQPEPEEPKDSQNDTDVSFQDEQQGL 534 (574) T ss_pred C--Ccc------chhccccccccccCCCCCCCCCCCCCCccccccchhhhhhhhh Confidence 0 000 0000001111111111111111110 0 No 40 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=99.54 E-value=5.9e-13 Score=87.63 Aligned_cols=475 Identities=11% Similarity=0.120 Sum_probs=211.0 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchh-hcccccC--cccc---chHHHHHHHHHHh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAG-YASRFYG--GIEF---NRFFLYDMYDRMD 74 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~-~~~~~yg--g~~~---n~~~li~~YR~m~ 74 (533) ||- =...+......+....++..-. |...+..... ..|+.... .++++|+ +... |-..+.+.|. T Consensus 23 ~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--- 92 (563) T protein:vir:95 23 VPI---DEGLQANIKKIEQDNKEYQDLT-KSLYGQQQAY---AEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFG--- 92 (563) T ss_pred eec---cCChhhhHhhhhccchhHHHHH-hhhccCCCcc---hhhhHhhhcccccccccccCCCCcccHHHHHHHhh--- Confidence 221 0000111111222222222211 1111211111 12222111 1234444 2233 3445555555 Q ss_pred hcChhHHHHHHHhhceee----e--cCCCCceeeeeccccc--ccHHHH---HHHHHHh------------hhHHHHHHH Q lcl|Aclame:pro 75 YTDPLISTVLDIIADECT----I--PNENGNIVDVVTKDIE--LAKAIL---SYLDYVI------------NIEKNAYPI 131 (533) Q Consensus 75 ~~~PEV~~AId~Ivneai----v--~d~~~~~v~v~l~~~e--~s~si~---~~i~~ll------------~f~~~~~e~ 131 (533) ..|-|..+|+.+++.+- + ...++-...|.+.+.. -+++.. ..+.++| .+...++.+ T Consensus 93 -~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~l 171 (563) T protein:vir:95 93 -NNPILNAIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKI 171 (563) T ss_pred -cchHHHHHHHHHHHHHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHH Confidence 35899999998887622 2 2222222334443322 222221 1222222 345677788 Q ss_pred HHHHhhcCceeEEEeec-CCCCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCccc Q lcl|Aclame:pro 132 IRNMIKYGDMFLHILEK-GSDGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDT 210 (533) Q Consensus 132 ~R~wyvDGr~~~~kiid-~~k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~ 210 (533) ++.+++.|+.|+.+++. +..+-+.+|.+|||.+|++..+..+...+. ...+.+...+.....+++.++||+..+... T Consensus 172 v~~lll~Gn~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g~~~~~--~~~y~~~~~g~~~~~~~~~evI~~~~~~~~ 249 (563) T protein:vir:95 172 VRDTYIYDQVNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKGKIIKG--GKRFVQVVDKRVVASFTSRELAMGIRNPRT 249 (563) T ss_pred HHHHHhcCCeEEEEEEEecCCCceEEEEEeCCceeEEEECCCCceecc--ceeEEEEeCCceeEEecCcceEEEeccCCC Confidence 88999999999988764 334569999999999999999988754211 001111112233445677888877644333 Q ss_pred C--cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCC-CchhhHHHHHHHHHHHhhhceeeccCCCee Q lcl|Aclame:pro 211 N--FFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGN-VPPDKINEYLTNIAMQYKRDYWVRNNQNQF 287 (533) Q Consensus 211 d--~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGn-lp~~kAeqy~~~im~~~knk~vyd~~tGei 287 (533) + .+.||+|-|..|++.+.....+++...-+=---+-.+=++-++.+. +-+..+++..+.+...|+. ....|++ T Consensus 250 d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G----~~nagk~ 325 (563) T protein:vir:95 250 ELSSSGYGLSEVEIAMKEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSG----INGSWQI 325 (563) T ss_pred CcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhcc----ccccccc Confidence 2 2569999999999999999988885554433334445566666653 4444444444444444421 0112221 Q ss_pred ecccccchhhhHHhhhhcccccCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCcc-----ch--- Q lcl|Aclame:pro 288 LGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVN-----AK--- 357 (533) Q Consensus 288 ~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~g-----r~--- 357 (533) .-++ ..|.++.-|.-. .+.-++-.+|..+.+.++.+||...|+.....+ -+ T Consensus 326 ---------~~vl----------~~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~ 386 (563) T protein:vir:95 326 ---------PVVM----------ADDIKFVNMTPTANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTL 386 (563) T ss_pred ---------eEEc----------CCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccch Confidence 1111 224556555322 222345567899999999999999998643211 11 Q ss_pred --hhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHH Q lcl|Aclame:pro 358 --NTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDW 434 (533) Q Consensus 358 --~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~ 434 (533) +.+....+.|.+ -+.-+..++.+.|.+.|+..- ...+.+.|.+.+.-+...-.++ ...+ T Consensus 387 ~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~---~~~~~~~f~r~D~~~~~e~~~~-------~~~~-------- 448 (563) T protein:vir:95 387 NEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEY---GDKYTFQFVGGDTKSATDKLNI-------LKLE-------- 448 (563) T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhc---ccccEEEeccCCHHHHHHHHHH-------HHHh-------- Confidence 222223334555 356666777777777766321 1234566766655222111111 1000 Q ss_pred HHHHHhcCChhhhHHHHHHhh-hcccCCC-------------C--CcccccccchhhhcCccCCcccccCCCcccccCCC Q lcl|Aclame:pro 435 IYSNILQIPYDLKPQEEVAEA-AGGGGLF-------------D--TGGFGEETTPADFLGERGSPIESPRGRTEFDFGTE 498 (533) Q Consensus 435 i~k~il~~tde~~~q~~~i~~-E~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (533) +-.-||..|.-.....+. ++.+..+ . .++...+.....-.+....|...|.. ++.+.+.+ T Consensus 449 ---~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 524 (563) T protein:vir:95 449 ---TQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEE-GQSTDSSN 524 (563) T ss_pred ---cCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhcccccCCCCCCCCC-CCCCCCCC Confidence 011233221111100000 0000000 0 00000000000000000111111111 11111112 Q ss_pred CCccCCCccCcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 499 GGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) .....|-+=.+++.++...-++|.-.|-..--+.+ T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (563) T protein:vir:95 525 DDKEIGTDAQIKGDDNVYRTQTSNKGQGRKGEKSS 559 (563) T ss_pred CccccccccccccccccccccCccccccccCcCcc Confidence 22222221123333333333333333322211111 No 41 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=99.54 E-value=5.9e-13 Score=87.63 Aligned_cols=475 Identities=11% Similarity=0.120 Sum_probs=211.0 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchh-hcccccC--cccc---chHHHHHHHHHHh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAG-YASRFYG--GIEF---NRFFLYDMYDRMD 74 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~-~~~~~yg--g~~~---n~~~li~~YR~m~ 74 (533) ||- =...+......+....++..-. |...+..... ..|+.... .++++|+ +... |-..+.+.|. T Consensus 23 ~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--- 92 (563) T protein:vir:99 23 VPI---DEGLQANIKKIEQDNKEYQDLT-KSLYGQQQAY---AEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFG--- 92 (563) T ss_pred eec---cCChhhhHhhhhccchhHHHHH-hhhccCCCcc---hhhhHhhhcccccccccccCCCCcccHHHHHHHhh--- Confidence 221 0000111111222222222211 1111211111 12222111 1234444 2233 3445555555 Q ss_pred hcChhHHHHHHHhhceee----e--cCCCCceeeeeccccc--ccHHHH---HHHHHHh------------hhHHHHHHH Q lcl|Aclame:pro 75 YTDPLISTVLDIIADECT----I--PNENGNIVDVVTKDIE--LAKAIL---SYLDYVI------------NIEKNAYPI 131 (533) Q Consensus 75 ~~~PEV~~AId~Ivneai----v--~d~~~~~v~v~l~~~e--~s~si~---~~i~~ll------------~f~~~~~e~ 131 (533) ..|-|..+|+.+++.+- + ...++-...|.+.+.. -+++.. ..+.++| .+...++.+ T Consensus 93 -~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~l 171 (563) T protein:vir:99 93 -NNPILNAIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKI 171 (563) T ss_pred -cchHHHHHHHHHHHHHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHH Confidence 35899999998887622 2 2222222334443322 222221 1222222 345677788 Q ss_pred HHHHhhcCceeEEEeec-CCCCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCccc Q lcl|Aclame:pro 132 IRNMIKYGDMFLHILEK-GSDGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDT 210 (533) Q Consensus 132 ~R~wyvDGr~~~~kiid-~~k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~ 210 (533) ++.+++.|+.|+.+++. +..+-+.+|.+|||.+|++..+..+...+. ...+.+...+.....+++.++||+..+... T Consensus 172 v~~lll~Gn~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g~~~~~--~~~y~~~~~g~~~~~~~~~evI~~~~~~~~ 249 (563) T protein:vir:99 172 VRDTYIYDQVNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKGKIIKG--GKRFVQVVDKRVVASFTSRELAMGIRNPRT 249 (563) T ss_pred HHHHHhcCCeEEEEEEEecCCCceEEEEEeCCceeEEEECCCCceecc--ceeEEEEeCCceeEEecCcceEEEeccCCC Confidence 88999999999988764 334569999999999999999988754211 001111112233445677888877644333 Q ss_pred C--cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCC-CchhhHHHHHHHHHHHhhhceeeccCCCee Q lcl|Aclame:pro 211 N--FFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGN-VPPDKINEYLTNIAMQYKRDYWVRNNQNQF 287 (533) Q Consensus 211 d--~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGn-lp~~kAeqy~~~im~~~knk~vyd~~tGei 287 (533) + .+.||+|-|..|++.+.....+++...-+=---+-.+=++-++.+. +-+..+++..+.+...|+. ....|++ T Consensus 250 d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G----~~nagk~ 325 (563) T protein:vir:99 250 ELSSSGYGLSEVEIAMKEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSG----INGSWQI 325 (563) T ss_pred CcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhcc----ccccccc Confidence 2 2569999999999999999988885554433334445566666653 4444444444444444421 0112221 Q ss_pred ecccccchhhhHHhhhhcccccCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCcc-----ch--- Q lcl|Aclame:pro 288 LGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVN-----AK--- 357 (533) Q Consensus 288 ~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~g-----r~--- 357 (533) .-++ ..|.++.-|.-. .+.-++-.+|..+.+.++.+||...|+.....+ -+ T Consensus 326 ---------~~vl----------~~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~ 386 (563) T protein:vir:99 326 ---------PVVM----------ADDIKFVNMTPTANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTL 386 (563) T ss_pred ---------eEEc----------CCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccch Confidence 1111 224556555322 222345567899999999999999998643211 11 Q ss_pred --hhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHH Q lcl|Aclame:pro 358 --NTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDW 434 (533) Q Consensus 358 --~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~ 434 (533) +.+....+.|.+ -+.-+..++.+.|.+.|+..- ...+.+.|.+.+.-+...-.++ ...+ T Consensus 387 ~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~---~~~~~~~f~r~D~~~~~e~~~~-------~~~~-------- 448 (563) T protein:vir:99 387 NEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEY---GDKYTFQFVGGDTKSATDKLNI-------LKLE-------- 448 (563) T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhc---ccccEEEeccCCHHHHHHHHHH-------HHHh-------- Confidence 222223334555 356666777777777766321 1234566766655222111111 1000 Q ss_pred HHHHHhcCChhhhHHHHHHhh-hcccCCC-------------C--CcccccccchhhhcCccCCcccccCCCcccccCCC Q lcl|Aclame:pro 435 IYSNILQIPYDLKPQEEVAEA-AGGGGLF-------------D--TGGFGEETTPADFLGERGSPIESPRGRTEFDFGTE 498 (533) Q Consensus 435 i~k~il~~tde~~~q~~~i~~-E~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (533) +-.-||..|.-.....+. ++.+..+ . .++...+.....-.+....|...|.. ++.+.+.+ T Consensus 449 ---~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 524 (563) T protein:vir:99 449 ---TQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEE-GQSTDSSN 524 (563) T ss_pred ---cCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhcccccCCCCCCCCC-CCCCCCCC Confidence 011233221111100000 0000000 0 00000000000000000111111111 11111112 Q ss_pred CCccCCCccCcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 499 GGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) .....|-+=.+++.++...-++|.-.|-..--+.+ T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (563) T protein:vir:99 525 DDKEIGTDAQIKGDDNVYRTQTSNKGQGRKGEKSS 559 (563) T ss_pred CccccccccccccccccccccCccccccccCcCcc Confidence 22222221123333333333333333322211111 No 42 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=99.54 E-value=4.5e-14 Score=93.76 Aligned_cols=382 Identities=14% Similarity=0.090 Sum_probs=179.9 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) |+-|.+|.+... +|....- +.... +.......+.+.+.... -|.... +.++|-| T Consensus 3 m~~f~~~~~~~~---------------~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~----~v~~~~--al~~~~v 56 (392) T protein:vir:39 3 LPILNFINQTND---------------PPEVGSV-QSYFP----DGNDAQIMESLLGDNNE----WVSARA--ALRNSDL 56 (392) T ss_pred chhhhhhhcccc---------------ccccccc-ccccc----cCchhhhhhhhcCCCCc----eechHH--hhccHHH Confidence 333433332111 1111100 11100 00111111111111110 122222 3357999 Q ss_pred HHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHH----HhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeee Q lcl|Aclame:pro 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDY----VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEK 156 (533) Q Consensus 81 ~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~----ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~e 156 (533) .+||+.|++.+-.. |+.+--+. -..+.+ .+.-....+.++..+++.|+.|..++.|. .+.+.+ T Consensus 57 ~~~i~~ia~~ia~l-----p~~~~~~~-------~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~-~g~~~~ 123 (392) T protein:vir:39 57 FSIILQLSSDLAIV-----KINAEKKK-------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA-NGADMK 123 (392) T ss_pred HHHHHHHHHhhccC-----ceeeccch-------hhhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECC-CCcEEE Confidence 99999999874321 11111000 011111 23345567888889999999999988764 456889 Q ss_pred eEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 FQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDA 236 (533) Q Consensus 157 lr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Eda 236 (533) |.+|+|.+|++..+..+...+|.++.. ++.++....+++++|+|+....+++. -+|+|.|..|...+.....+++. T Consensus 124 L~~l~~~~v~~~~~~~~~~~~y~~~~~---~~~~~~~~~~~~~eiih~~~~~~~~~-~~G~s~i~~~~~~i~~~~~~~~~ 199 (392) T protein:vir:39 124 WEYLRPSQVNTYYFEYENGMYYNITFD---DPKIEPILQAPQSDLIHMKLLSIDGG-KTGISPLYSLRRESKIQRASDRL 199 (392) T ss_pred EEEEcCceeEEEEcCCCceEEEEEEec---CcccceeEEEccccEEEecCCCCCCc-cccccHHHHHHHHHHHHHHHHHH Confidence 999999999999999888888776443 12333445688999999986655542 48999999999999999988885 Q ss_pred HHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCccee Q lcl|Aclame:pro 237 LMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEI 316 (533) Q Consensus 237 lVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi 316 (533) ..-+=---+-.+-++.++-+.....++. +.+...|+.. .+.|.+. .+ ..|+++ T Consensus 200 ~~~~f~ng~~p~gil~~~~~~~~~~~~~---~~~~~~~~~~----~~~g~~~----------vl----------~~g~~~ 252 (392) T protein:vir:39 200 TISSLNSSLNVPGVLTVKGGGLLSDKDK---ASRSRSFMKR----SRSGGPV----------VL----------DDLEEF 252 (392) T ss_pred HHHHHhccCCCceEEEeCCCCCchHHHH---HHHHHHHhcc----ccCCCee----------ec----------CCCceE Confidence 5432222233334444443333333322 2233333321 1223321 11 125677 Q ss_pred eecCCC-C-CChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCC Q lcl|Aclame:pro 317 DILQGS-K-VDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFA 393 (533) Q Consensus 317 ~TLpG~-n-lg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t 393 (533) +.|.-. . +.-++=.+|..+.+.+++|||...|+...+.. ....+-..|.. -|.-+.+.+.+.|...|... T Consensus 253 ~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~---~~~~~~~~f~~~~l~P~~~~ie~~l~~~L~~~---- 325 (392) T protein:vir:39 253 TALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ---SSIQQISGMYASALNRYLRPAISELEYKLSDH---- 325 (392) T ss_pred EEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---- Confidence 777432 2 22245578888999999999999997433222 11112223544 34555566677777766422 Q ss_pred ccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCccc-ccccc Q lcl|Aclame:pro 394 DQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGF-GEETT 472 (533) Q Consensus 394 ~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~-~~~~~ 472 (533) +++++. .+.+... ..+...+..+ + +..-+|..+. ++ |..+ .+..+ ++. ..+.. T Consensus 326 ---~~~d~~------~~~~~d~-~~~~~~~~~l---~-------~~g~~t~nE~--r~-~l~~--~g~~p-~e~r~~e~l 379 (392) T protein:vir:39 326 ---ISVNMR------PAIDPLG-DNYLSTISTA---T-------RWGALAENQA--TF-VLQE--AGYIP-KDLPAPENT 379 (392) T ss_pred ---ccccch------hhhccCH-HHHHHHHHHH---H-------hCCCcCHHHH--HH-HHHh--cCCCc-cccchhcCC Confidence 111110 0000000 0111111110 0 0011222111 01 1111 11111 110 00001 Q ss_pred hhhhcCccCCcccccCCCcccccCCCCCccCC Q lcl|Aclame:pro 473 PADFLGERGSPIESPRGRTEFDFGTEGGEELG 504 (533) Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (533) |....|.. .++.. T Consensus 380 ~~~~~Gd~-------------------~~p~p 392 (392) T protein:vir:39 380 NKKTTGQS-------------------NEPVP 392 (392) T ss_pred CCCCCCCC-------------------CCCCC Confidence 10011111 11111 No 43 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=99.54 E-value=4.5e-14 Score=93.76 Aligned_cols=382 Identities=14% Similarity=0.090 Sum_probs=179.9 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) |+-|.+|.+... +|....- +.... +.......+.+.+.... -|.... +.++|-| T Consensus 3 m~~f~~~~~~~~---------------~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~----~v~~~~--al~~~~v 56 (392) T protein:vir:10 3 LPILNFINQTND---------------PPEVGSV-QSYFP----DGNDAQIMESLLGDNNE----WVSARA--ALRNSDL 56 (392) T ss_pred chhhhhhhcccc---------------ccccccc-ccccc----cCchhhhhhhhcCCCCc----eechHH--hhccHHH Confidence 333433332111 1111100 11100 00111111111111110 122222 3357999 Q ss_pred HHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHH----HhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeee Q lcl|Aclame:pro 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDY----VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEK 156 (533) Q Consensus 81 ~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~----ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~e 156 (533) .+||+.|++.+-.. |+.+--+. -..+.+ .+.-....+.++..+++.|+.|..++.|. .+.+.+ T Consensus 57 ~~~i~~ia~~ia~l-----p~~~~~~~-------~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~-~g~~~~ 123 (392) T protein:vir:10 57 FSIILQLSSDLAIV-----KINAEKKK-------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA-NGADMK 123 (392) T ss_pred HHHHHHHHHhhccC-----ceeeccch-------hhhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECC-CCcEEE Confidence 99999999874321 11111000 011111 23345567888889999999999988764 456889 Q ss_pred eEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 FQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDA 236 (533) Q Consensus 157 lr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Eda 236 (533) |.+|+|.+|++..+..+...+|.++.. ++.++....+++++|+|+....+++. -+|+|.|..|...+.....+++. T Consensus 124 L~~l~~~~v~~~~~~~~~~~~y~~~~~---~~~~~~~~~~~~~eiih~~~~~~~~~-~~G~s~i~~~~~~i~~~~~~~~~ 199 (392) T protein:vir:10 124 WEYLRPSQVNTYYFEYENGMYYNITFD---DPKIEPILQAPQSDLIHMKLLSIDGG-KTGISPLYSLRRESKIQRASDRL 199 (392) T ss_pred EEEEcCceeEEEEcCCCceEEEEEEec---CcccceeEEEccccEEEecCCCCCCc-cccccHHHHHHHHHHHHHHHHHH Confidence 999999999999999888888776443 12333445688999999986655542 48999999999999999988885 Q ss_pred HHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCccee Q lcl|Aclame:pro 237 LMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEI 316 (533) Q Consensus 237 lVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi 316 (533) ..-+=---+-.+-++.++-+.....++. +.+...|+.. .+.|.+. .+ ..|+++ T Consensus 200 ~~~~f~ng~~p~gil~~~~~~~~~~~~~---~~~~~~~~~~----~~~g~~~----------vl----------~~g~~~ 252 (392) T protein:vir:10 200 TISSLNSSLNVPGVLTVKGGGLLSDKDK---ASRSRSFMKR----SRSGGPV----------VL----------DDLEEF 252 (392) T ss_pred HHHHHhccCCCceEEEeCCCCCchHHHH---HHHHHHHhcc----ccCCCee----------ec----------CCCceE Confidence 5432222233334444443333333322 2233333321 1223321 11 125677 Q ss_pred eecCCC-C-CChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCC Q lcl|Aclame:pro 317 DILQGS-K-VDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFA 393 (533) Q Consensus 317 ~TLpG~-n-lg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t 393 (533) +.|.-. . +.-++=.+|..+.+.+++|||...|+...+.. ....+-..|.. -|.-+.+.+.+.|...|... T Consensus 253 ~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~---~~~~~~~~f~~~~l~P~~~~ie~~l~~~L~~~---- 325 (392) T protein:vir:10 253 TALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ---SSIQQISGMYASALNRYLRPAISELEYKLSDH---- 325 (392) T ss_pred EEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---- Confidence 777432 2 22245578888999999999999997433222 11112223544 34555566677777766422 Q ss_pred ccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCccc-ccccc Q lcl|Aclame:pro 394 DQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGF-GEETT 472 (533) Q Consensus 394 ~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~-~~~~~ 472 (533) +++++. .+.+... ..+...+..+ + +..-+|..+. ++ |..+ .+..+ ++. ..+.. T Consensus 326 ---~~~d~~------~~~~~d~-~~~~~~~~~l---~-------~~g~~t~nE~--r~-~l~~--~g~~p-~e~r~~e~l 379 (392) T protein:vir:10 326 ---ISVNMR------PAIDPLG-DNYLSTISTA---T-------RWGALAENQA--TF-VLQE--AGYIP-KDLPAPENT 379 (392) T ss_pred ---ccccch------hhhccCH-HHHHHHHHHH---H-------hCCCcCHHHH--HH-HHHh--cCCCc-cccchhcCC Confidence 111110 0000000 0111111110 0 0011222111 01 1111 11111 110 00001 Q ss_pred hhhhcCccCCcccccCCCcccccCCCCCccCC Q lcl|Aclame:pro 473 PADFLGERGSPIESPRGRTEFDFGTEGGEELG 504 (533) Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (533) |....|.. .++.. T Consensus 380 ~~~~~Gd~-------------------~~p~p 392 (392) T protein:vir:10 380 NKKTTGQS-------------------NEPVP 392 (392) T ss_pred CCCCCCCC-------------------CCCCC Confidence 10011111 11111 No 44 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=99.54 E-value=9.3e-15 Score=97.50 Aligned_cols=266 Identities=15% Similarity=0.179 Sum_probs=164.1 Q ss_pred hhceeeecCCCCceeeeecccccccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeE Q lcl|Aclame:pro 87 IADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQ 158 (533) Q Consensus 87 Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr 158 (533) |+ ..|+.+- ++.+..+ ..+..+| ......+.+++.++++|+.|..++.+. ++.+.+|. T Consensus 1 ia---------~l~~~~~-~~~~~~~---~~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~-~G~~~~l~ 66 (278) T protein:vir:78 1 MA---------SLPLKMY-EDYKVVN---TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI-YHQPSKLF 66 (278) T ss_pred Cc---------cceeEEE-ecCcccc---cHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECC-CCcEEEEE Confidence 22 1111111 1112222 2333433 345678999999999999999988753 45588999 Q ss_pred EcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 VVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALM 238 (533) Q Consensus 159 ~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalV 238 (533) +|+|.+|++..+..+...+|.|... .+....+++.+|+|+......+ +-+|+|.+..|.+++.....++... T Consensus 67 ~l~~~~v~v~~~~~~~~~~y~~~~~------~g~~~~~~~~evih~~~~~~~~-~~~G~s~~~~~~~~i~~~~~~~~~~- 138 (278) T protein:vir:78 67 LLNPDVVEMLIENQSRELYYSIHAA------TGNKLIVHNMDMLHFKHIVASN-MVQGISPIDVLKNTTDFDNAVRTFN- 138 (278) T ss_pred EECCceeEEEEcCCCceEEEEEEcC------CceEEEEccccEEEECCCCCCC-CeeeccHHHHHHHHHHHHHHHHHHH- Confidence 9999999999999888888877543 2345568889999997543332 3589999999999999988887753 Q ss_pred HHHHhccccceeeecCC-CCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceee Q lcl|Aclame:pro 239 LYRVVRSVDRRVFYVDV-GNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEID 317 (533) Q Consensus 239 IyRi~RAPeRr~fyidv-Gnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~ 317 (533) +++..+.| . +.+.. +++.+..+++..+ ++++.. + +.|.+. .+ ..|+++. T Consensus 139 ~~~~~~~~-~--~i~~~~~~l~~e~~~~~~~----~~~~~~--~-~~g~~~----------vl----------~~g~~~~ 188 (278) T protein:vir:78 139 LTEMQKPD-S--FMLKYGSNVGKEKRQQVLE----DFKQYY--E-ENGGIL----------FQ----------EPGVEIE 188 (278) T ss_pred HHHhcCCC-c--EEEEeCCCCCHHHHHHHHH----HHHHHh--c-cCCCce----------ec----------CCCceEE Confidence 34444444 3 33333 4666555544333 333321 2 234321 11 1356777 Q ss_pred ecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCc Q lcl|Aclame:pro 318 ILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFAD 394 (533) Q Consensus 318 TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~ 394 (533) .|.=. .+.-++-.++..+.+.+++|||.+.++...+.+ .+.+......|..+ |..+...+.+.|.+.|+.+.... T Consensus 189 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~-~sn~~~~~~~~~~~~l~P~~~~i~~~ln~~L~~~~e~~- 266 (278) T protein:vir:78 189 PLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTN-FAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDRE- 266 (278) T ss_pred EccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhc- Confidence 77321 222233356889999999999999998544332 23343344456664 77788888888888875432221 Q ss_pred cceeEEecCCcH Q lcl|Aclame:pro 395 QDFRLVMNRSNS 406 (533) Q Consensus 395 eew~~~f~~dn~ 406 (533) .-..|.|.-+.- T Consensus 267 ~g~~~~f~~~~l 278 (278) T protein:vir:78 267 KIGILNLTLNLI 278 (278) T ss_pred CCceEEEecccC Confidence 113455555444 No 45 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=99.53 E-value=8.2e-13 Score=86.83 Aligned_cols=415 Identities=11% Similarity=0.106 Sum_probs=206.4 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~A 83 (533) |.+|.+ +.++|+|..+.. +..+..+...+....... ....+..-| .+.+.++|.|.++ T Consensus 1 M~~~~r----------~~~~~~~~~r~~---~~~~~~~~~~~~~~~~~g-~~~~~~~v~--------~~~al~~~~v~~~ 58 (432) T protein:vir:10 1 MKIVDS----------VKKFFNFEKRQT---SQVIELNKDDEKLLEWLG-ISPSTISVK--------GKNALKVATVFAC 58 (432) T ss_pred CChHHH----------HHHhcCccccCc---ccccccCCchHHHHHHhC-CCcCccccc--------hhhhhccHHHHHH Confidence 455544 244566632221 223333322221111111 111111112 1234568999999 Q ss_pred HHHhhceeeecCCCCceeeeeccccccc-HHHHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecCCCCCe Q lcl|Aclame:pro 84 LDIIADECTIPNENGNIVDVVTKDIELA-KAILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKGSDGTI 154 (533) Q Consensus 84 Id~Ivneaiv~d~~~~~v~v~l~~~e~s-~si~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI 154 (533) |+.|++.+=. .|+.+..++-+-. ......+..||+ -....+.++..+++.|+.|..++.+. .+-+ T Consensus 59 i~~ia~~ia~-----lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-~G~~ 132 (432) T protein:vir:10 59 IKILSESVSK-----LPLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDR-KGKV 132 (432) T ss_pred HHHHHHhhcc-----CceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECC-CCcE Confidence 9999976431 2222221111111 111223444443 35578888999999999999988764 3558 Q ss_pred eeeEEcCcceeeEEeeccCc-----EEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHH Q lcl|Aclame:pro 155 EKFQVVSPYIFSKRYNPETD-----TWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQ 229 (533) Q Consensus 155 ~elr~ldP~~ik~v~d~~g~-----~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~Nq 229 (533) .+|..|+|.+|+++++..+. +.+|.+.. ++....+++++|||+.+....+ +-+|+|.|..|++.+.. T Consensus 133 ~~L~~i~~~~v~v~~d~~~~~~~~~~~~y~~~~-------~g~~~~~~~~eiih~r~~~~~~-~~~G~s~~~~~~~~i~~ 204 (432) T protein:vir:10 133 QALWPIDASKVTVYIDDVGLLNSKTKMWYVVNT-------GGQQRVLKPEEILHFKNGITLD-GLVGVPTMEYLKSTLEN 204 (432) T ss_pred EEEEEEcCceeEEEEcCcccccccceEEEEEec-------CCeEEEEccccEEEecCCCCCC-CcccccHHHHHHHHHHH Confidence 89999999999999886543 23444422 3445668899999998654333 34899999999999999 Q ss_pred HHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhccccc Q lcl|Aclame:pro 230 LRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRG 309 (533) Q Consensus 230 Lrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~ 309 (533) ...+++...-+----+..+-++.++ +++-+.++++..+.+...|.. .+ +.|.+ + .+ T Consensus 205 ~~~~~~~~~~~~~ng~~p~gil~~~-~~l~~e~~~~~~~~~~~~~~g---~~-n~~~~---------~-vl--------- 260 (432) T protein:vir:10 205 SASADKFINNFYKQGLQVKGLVQYV-GDLNEDAKKVFRENFESMSSG---LQ-NSHRI---------A-LM--------- 260 (432) T ss_pred HHHHHHHHHHHHhccCCccEEEEcC-CCCCHHHHHHHHHHHHHHhcc---cc-cCCcc---------e-ec--------- Confidence 9888886554433333334455444 356555555555554444321 01 11221 1 12 Q ss_pred CCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 310 DRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMV 386 (533) Q Consensus 310 g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qL 386 (533) ..|+++..|.=. .+.-++-.++..+.+.+++|||...|+..+... .+.+....+.|.+ -|.-+..++++.|.+.| T Consensus 261 -~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~-~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kL 338 (432) T protein:vir:10 261 -PVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKAT-LNNIEQQQQQFYTDTLQATLTMYEQEMTYKL 338 (432) T ss_pred -CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 124566665311 222234467788999999999999997533322 2233334444554 46667777888888877 Q ss_pred hhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcc Q lcl|Aclame:pro 387 RMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGG 466 (533) Q Consensus 387 ilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~ 466 (533) +.+.... ..+.+.|..+. +... -+..|.+++..+ -+..-||.++.-. .++-.++ ++ T Consensus 339 l~~~~~~-~g~~~~fd~~~----l~~~-d~~~~~~~~~~~----------~~~G~~t~NE~R~-----~~g~~pi---~g 394 (432) T protein:vir:10 339 FLDSELD-KGFYSKFNVDA----ILRA-DIKTRYEAYRTG----------IQGGFLKPNEARS-----KEDLPPE---AG 394 (432) T ss_pred cChhhcC-CCcEEEeechh----hhcC-CHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCC---CC Confidence 7554332 22345554332 2211 123344444432 1334566433211 1222222 22 Q ss_pred cccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCC Q lcl|Aclame:pro 467 FGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGG 522 (533) Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 522 (533) -|+-..+. ...|++..... ...||+-|- ....+..+|. T Consensus 395 gD~~~~~~-----n~~~~~~~~~~----------~~k~~~~~~---~~~~~~~~~~ 432 (432) T protein:vir:10 395 GDRLLVNG-----NMLPIDMAGQA----------YLKGGDTNG---EVSKEGNEGN 432 (432) T ss_pred CCeEeecc-----cccchhhcccc----------ccCCCCCCC---CCCCCCCCCC Confidence 22211111 11111111000 001111000 0000000011 No 46 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=99.53 E-value=8.2e-13 Score=86.83 Aligned_cols=415 Identities=11% Similarity=0.106 Sum_probs=206.4 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~A 83 (533) |.+|.+ +.++|+|..+.. +..+..+...+....... ....+..-| .+.+.++|.|.++ T Consensus 1 M~~~~r----------~~~~~~~~~r~~---~~~~~~~~~~~~~~~~~g-~~~~~~~v~--------~~~al~~~~v~~~ 58 (432) T protein:vir:10 1 MKIVDS----------VKKFFNFEKRQT---SQVIELNKDDEKLLEWLG-ISPSTISVK--------GKNALKVATVFAC 58 (432) T ss_pred CChHHH----------HHHhcCccccCc---ccccccCCchHHHHHHhC-CCcCccccc--------hhhhhccHHHHHH Confidence 455544 244566632221 223333322221111111 111111112 1234568999999 Q ss_pred HHHhhceeeecCCCCceeeeeccccccc-HHHHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecCCCCCe Q lcl|Aclame:pro 84 LDIIADECTIPNENGNIVDVVTKDIELA-KAILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKGSDGTI 154 (533) Q Consensus 84 Id~Ivneaiv~d~~~~~v~v~l~~~e~s-~si~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI 154 (533) |+.|++.+=. .|+.+..++-+-. ......+..||+ -....+.++..+++.|+.|..++.+. .+-+ T Consensus 59 i~~ia~~ia~-----lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-~G~~ 132 (432) T protein:vir:10 59 IKILSESVSK-----LPLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDR-KGKV 132 (432) T ss_pred HHHHHHhhcc-----CceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECC-CCcE Confidence 9999976431 2222221111111 111223444443 35578888999999999999988764 3558 Q ss_pred eeeEEcCcceeeEEeeccCc-----EEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHH Q lcl|Aclame:pro 155 EKFQVVSPYIFSKRYNPETD-----TWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQ 229 (533) Q Consensus 155 ~elr~ldP~~ik~v~d~~g~-----~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~Nq 229 (533) .+|..|+|.+|+++++..+. +.+|.+.. ++....+++++|||+.+....+ +-+|+|.|..|++.+.. T Consensus 133 ~~L~~i~~~~v~v~~d~~~~~~~~~~~~y~~~~-------~g~~~~~~~~eiih~r~~~~~~-~~~G~s~~~~~~~~i~~ 204 (432) T protein:vir:10 133 QALWPIDASKVTVYIDDVGLLNSKTKMWYVVNT-------GGQQRVLKPEEILHFKNGITLD-GLVGVPTMEYLKSTLEN 204 (432) T ss_pred EEEEEEcCceeEEEEcCcccccccceEEEEEec-------CCeEEEEccccEEEecCCCCCC-CcccccHHHHHHHHHHH Confidence 89999999999999886543 23444422 3445668899999998654333 34899999999999999 Q ss_pred HHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhccccc Q lcl|Aclame:pro 230 LRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRG 309 (533) Q Consensus 230 Lrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~ 309 (533) ...+++...-+----+..+-++.++ +++-+.++++..+.+...|.. .+ +.|.+ + .+ T Consensus 205 ~~~~~~~~~~~~~ng~~p~gil~~~-~~l~~e~~~~~~~~~~~~~~g---~~-n~~~~---------~-vl--------- 260 (432) T protein:vir:10 205 SASADKFINNFYKQGLQVKGLVQYV-GDLNEDAKKVFRENFESMSSG---LQ-NSHRI---------A-LM--------- 260 (432) T ss_pred HHHHHHHHHHHHhccCCccEEEEcC-CCCCHHHHHHHHHHHHHHhcc---cc-cCCcc---------e-ec--------- Confidence 9888886554433333334455444 356555555555554444321 01 11221 1 12 Q ss_pred CCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 310 DRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMV 386 (533) Q Consensus 310 g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qL 386 (533) ..|+++..|.=. .+.-++-.++..+.+.+++|||...|+..+... .+.+....+.|.+ -|.-+..++++.|.+.| T Consensus 261 -~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~-~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kL 338 (432) T protein:vir:10 261 -PVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKAT-LNNIEQQQQQFYTDTLQATLTMYEQEMTYKL 338 (432) T ss_pred -CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 124566665311 222234467788999999999999997533322 2233334444554 46667777888888877 Q ss_pred hhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcc Q lcl|Aclame:pro 387 RMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGG 466 (533) Q Consensus 387 ilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~ 466 (533) +.+.... ..+.+.|..+. +... -+..|.+++..+ -+..-||.++.-. .++-.++ ++ T Consensus 339 l~~~~~~-~g~~~~fd~~~----l~~~-d~~~~~~~~~~~----------~~~G~~t~NE~R~-----~~g~~pi---~g 394 (432) T protein:vir:10 339 FLDSELD-KGFYSKFNVDA----ILRA-DIKTRYEAYRTG----------IQGGFLKPNEARS-----KEDLPPE---AG 394 (432) T ss_pred cChhhcC-CCcEEEeechh----hhcC-CHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCC---CC Confidence 7554332 22345554332 2211 123344444432 1334566433211 1222222 22 Q ss_pred cccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCC Q lcl|Aclame:pro 467 FGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGG 522 (533) Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 522 (533) -|+-..+. ...|++..... ...||+-|- ....+..+|. T Consensus 395 gD~~~~~~-----n~~~~~~~~~~----------~~k~~~~~~---~~~~~~~~~~ 432 (432) T protein:vir:10 395 GDRLLVNG-----NMLPIDMAGQA----------YLKGGDTNG---EVSKEGNEGN 432 (432) T ss_pred CCeEeecc-----cccchhhcccc----------ccCCCCCCC---CCCCCCCCCC Confidence 22211111 11111111000 001111000 0000000011 No 47 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=99.53 E-value=8.2e-13 Score=86.83 Aligned_cols=415 Identities=11% Similarity=0.106 Sum_probs=206.4 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~A 83 (533) |.+|.+ +.++|+|..+.. +..+..+...+....... ....+..-| .+.+.++|.|.++ T Consensus 1 M~~~~r----------~~~~~~~~~r~~---~~~~~~~~~~~~~~~~~g-~~~~~~~v~--------~~~al~~~~v~~~ 58 (432) T protein:vir:10 1 MKIVDS----------VKKFFNFEKRQT---SQVIELNKDDEKLLEWLG-ISPSTISVK--------GKNALKVATVFAC 58 (432) T ss_pred CChHHH----------HHHhcCccccCc---ccccccCCchHHHHHHhC-CCcCccccc--------hhhhhccHHHHHH Confidence 455544 244566632221 223333322221111111 111111112 1234568999999 Q ss_pred HHHhhceeeecCCCCceeeeeccccccc-HHHHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecCCCCCe Q lcl|Aclame:pro 84 LDIIADECTIPNENGNIVDVVTKDIELA-KAILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKGSDGTI 154 (533) Q Consensus 84 Id~Ivneaiv~d~~~~~v~v~l~~~e~s-~si~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI 154 (533) |+.|++.+=. .|+.+..++-+-. ......+..||+ -....+.++..+++.|+.|..++.+. .+-+ T Consensus 59 i~~ia~~ia~-----lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-~G~~ 132 (432) T protein:vir:10 59 IKILSESVSK-----LPLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDR-KGKV 132 (432) T ss_pred HHHHHHhhcc-----CceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECC-CCcE Confidence 9999976431 2222221111111 111223444443 35578888999999999999988764 3558 Q ss_pred eeeEEcCcceeeEEeeccCc-----EEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHH Q lcl|Aclame:pro 155 EKFQVVSPYIFSKRYNPETD-----TWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQ 229 (533) Q Consensus 155 ~elr~ldP~~ik~v~d~~g~-----~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~Nq 229 (533) .+|..|+|.+|+++++..+. +.+|.+.. ++....+++++|||+.+....+ +-+|+|.|..|++.+.. T Consensus 133 ~~L~~i~~~~v~v~~d~~~~~~~~~~~~y~~~~-------~g~~~~~~~~eiih~r~~~~~~-~~~G~s~~~~~~~~i~~ 204 (432) T protein:vir:10 133 QALWPIDASKVTVYIDDVGLLNSKTKMWYVVNT-------GGQQRVLKPEEILHFKNGITLD-GLVGVPTMEYLKSTLEN 204 (432) T ss_pred EEEEEEcCceeEEEEcCcccccccceEEEEEec-------CCeEEEEccccEEEecCCCCCC-CcccccHHHHHHHHHHH Confidence 89999999999999886543 23444422 3445668899999998654333 34899999999999999 Q ss_pred HHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhccccc Q lcl|Aclame:pro 230 LRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRG 309 (533) Q Consensus 230 Lrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~ 309 (533) ...+++...-+----+..+-++.++ +++-+.++++..+.+...|.. .+ +.|.+ + .+ T Consensus 205 ~~~~~~~~~~~~~ng~~p~gil~~~-~~l~~e~~~~~~~~~~~~~~g---~~-n~~~~---------~-vl--------- 260 (432) T protein:vir:10 205 SASADKFINNFYKQGLQVKGLVQYV-GDLNEDAKKVFRENFESMSSG---LQ-NSHRI---------A-LM--------- 260 (432) T ss_pred HHHHHHHHHHHHhccCCccEEEEcC-CCCCHHHHHHHHHHHHHHhcc---cc-cCCcc---------e-ec--------- Confidence 9888886554433333334455444 356555555555554444321 01 11221 1 12 Q ss_pred CCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 310 DRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMV 386 (533) Q Consensus 310 g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qL 386 (533) ..|+++..|.=. .+.-++-.++..+.+.+++|||...|+..+... .+.+....+.|.+ -|.-+..++++.|.+.| T Consensus 261 -~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~-~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kL 338 (432) T protein:vir:10 261 -PVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKAT-LNNIEQQQQQFYTDTLQATLTMYEQEMTYKL 338 (432) T ss_pred -CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 124566665311 222234467788999999999999997533322 2233334444554 46667777888888877 Q ss_pred hhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcc Q lcl|Aclame:pro 387 RMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGG 466 (533) Q Consensus 387 ilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~ 466 (533) +.+.... ..+.+.|..+. +... -+..|.+++..+ -+..-||.++.-. .++-.++ ++ T Consensus 339 l~~~~~~-~g~~~~fd~~~----l~~~-d~~~~~~~~~~~----------~~~G~~t~NE~R~-----~~g~~pi---~g 394 (432) T protein:vir:10 339 FLDSELD-KGFYSKFNVDA----ILRA-DIKTRYEAYRTG----------IQGGFLKPNEARS-----KEDLPPE---AG 394 (432) T ss_pred cChhhcC-CCcEEEeechh----hhcC-CHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCC---CC Confidence 7554332 22345554332 2211 123344444432 1334566433211 1222222 22 Q ss_pred cccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCC Q lcl|Aclame:pro 467 FGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGG 522 (533) Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 522 (533) -|+-..+. ...|++..... ...||+-|- ....+..+|. T Consensus 395 gD~~~~~~-----n~~~~~~~~~~----------~~k~~~~~~---~~~~~~~~~~ 432 (432) T protein:vir:10 395 GDRLLVNG-----NMLPIDMAGQA----------YLKGGDTNG---EVSKEGNEGN 432 (432) T ss_pred CCeEeecc-----cccchhhcccc----------ccCCCCCCC---CCCCCCCCCC Confidence 22211111 11111111000 001111000 0000000011 No 48 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=99.53 E-value=2.2e-13 Score=89.97 Aligned_cols=406 Identities=13% Similarity=0.023 Sum_probs=187.4 Q ss_pred HHHHhhcChhHHHHHHHhhceeeecCCCCceeeeecc----cccccHHHHHHHHHH-----------------hhhHHHH Q lcl|Aclame:pro 70 YDRMDYTDPLISTVLDIIADECTIPNENGNIVDVVTK----DIELAKAILSYLDYV-----------------INIEKNA 128 (533) Q Consensus 70 YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~----~~e~s~si~~~i~~l-----------------l~f~~~~ 128 (533) -|.|..++|-|.++|+.|++.+.. .|+.|... ...-.....+.+... +.+...+ T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~-----~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~ 75 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAG-----FGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVL 75 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhc-----CCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHH Confidence 677887889999999999988752 23222211 111112222222221 1233456 Q ss_pred HHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCc--------EEEEEeccccee-------------- Q lcl|Aclame:pro 129 YPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETD--------TWYYVITDVYRN-------------- 186 (533) Q Consensus 129 ~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~--------~e~y~y~~~~~~-------------- 186 (533) +..++..++.|+.|..++.+. ++.+.+|.+|||.+|++..+..+- .+|..|...+.. T Consensus 76 ~~~~~~l~l~Gn~~i~~~r~~-~G~~~~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (467) T protein:vir:31 76 QTAWTDYEAIGWLTIEILTQT-DGTPTGLAYVPGHTIRKRMDERGFVQLLEEKEKYFGVAGDRYQTNGNGDLDPVFVDAD 154 (467) T ss_pred HHHHHHHHhcCCeEEEEEECC-CCcEEEEEEeCCceeEeeeecceeEeecCCceeeEEeccccceeecccceeeeeeeec Confidence 667777888999999988764 466889999999999988776431 222222211111 Q ss_pred cccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHH-HHHHhccccceeeecCCCCCchhhHHH Q lcl|Aclame:pro 187 VVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALM-LYRVVRSVDRRVFYVDVGNVPPDKINE 265 (533) Q Consensus 187 ~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalV-IyRi~RAPeRr~fyidvGnlp~~kAeq 265 (533) .+..+....+++.+|||+......+ +-+|+|.+..|++.+..-..++.... .|+-. +-..-++.+.-+.+-+..+ + T Consensus 155 ~~~~~~~~~~~~~diih~r~~~~~~-~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng-~~p~gil~~~~~~l~~e~~-~ 231 (467) T protein:vir:31 155 DGSTGTSVSNPANELIFKRNHSPLY-PHYGAPDIIPAVKTIRGDSAAQDYNIDFFEND-GVPRIAIIVKGAELTEKGR-E 231 (467) T ss_pred cccccceeEeccccEEEecCCCCCC-CcccccHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCceEEEecCcCCCHHHH-H Confidence 2233445567889999997543332 34999999999888776666665332 22211 1112233333344544444 4 Q ss_pred HHHHHH-HHhhhce--eeccCCCeeecccccchhhhHHhhhhcccccCCC----cceeeecCCCCCChH---HHHHHHHH Q lcl|Aclame:pro 266 YLTNIA-MQYKRDY--WVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRR----AVEIDILQGSKVDLA---EDVEYMLN 335 (533) Q Consensus 266 y~~~im-~~~knk~--vyd~~tGei~d~~~~~n~~smleDywlprR~g~~----gtEi~TLpG~nlg~i---~Dv~Yf~~ 335 (533) -+++.+ ..+++.. .+-...|. .+.. -..++ -.|.. +.+++.|.-.+-.++ +=.++..+ T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~g~----~n~~-~~~~l-------~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~ 299 (467) T protein:vir:31 232 EMRNLIEDNNEDNHRTAFIETEKI----VQNE-DYLNL-------ADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEH 299 (467) T ss_pred HHHHHHHhhhcchhhhhhhhhccc----cccc-ccccc-------cCCCcccccceeEEeccccChhhHHHHHHHHHHHH Confidence 444443 3333211 11111110 0000 00011 11111 122222211111111 22345667 Q ss_pred HHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcHHHHHHHHH Q lcl|Aclame:pro 336 RLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFA 414 (533) Q Consensus 336 kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~e 414 (533) .+.++.|||...|+...+.+.++.+......|.++ |.-+.+++.+.|...|+... .....|.+.|..+..- .. T Consensus 300 ~Ia~~fgVpp~~lG~~~~~~~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~-~~~~~~~i~f~~~~l~-----~~ 373 (467) T protein:vir:31 300 DILKVHDVPPVIAGVVESGAFSTDAEEQRKEFAEETIQPKQHDFGELLYELVHKQG-LDAPDWTIEFELAKPD-----TK 373 (467) T ss_pred HHHHHhCCCHHHcccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-hccCCceEEEecchhh-----cc Confidence 79999999999998654444444555555567554 67777888888888776433 2234555666544441 11 Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccc Q lcl|Aclame:pro 415 VIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFD 494 (533) Q Consensus 415 i~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (533) -.+.|++++..+ -+..-||..+.= +.++-.++.+ +..-+ ....+.....+.. .. T Consensus 374 d~~~~~~~~~~~----------~~~G~~T~NE~R-----~~~Gl~pi~d-----~~~~~-----~~~~~~~~~~~~~-~~ 427 (467) T protein:vir:31 374 LQDVEIASQRVQ----------AMQGLLTVNELR-----DEFGFEPFPE-----EHVYG-----GETLVAEVTGGSG-PG 427 (467) T ss_pred CHHHHHHHHHHH----------HhCCCcCHHHHH-----HHhCCCCCCc-----ccccC-----CcccccccccccC-CC Confidence 122333333221 133345543321 1222223311 11100 0000000000000 00 Q ss_pred cCCCCCccCCCccCcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 495 FGTEGGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) .+.++...++++ +.+++.-+...+. .+-+-|.|+ T Consensus 428 ~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~ 461 (467) T protein:vir:31 428 GGIGDQIEQLVE----DRADEIIDSYQAD-LETEQLIEI 461 (467) T ss_pred CcccCcCCCCCC----CcccchHhhhhhc-cccchhhhh Confidence 111112212221 1111111111111 111222333 No 49 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=99.51 E-value=9.8e-13 Score=86.42 Aligned_cols=441 Identities=14% Similarity=0.061 Sum_probs=200.0 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~A 83 (533) |- +.+.+|+...+...++...-..+..++..... .+...+|..-+ .+.+.+.|.|.+| T Consensus 1 Mg-------------~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~V~--------~~~al~~~~V~~~ 58 (457) T protein:vir:13 1 MG-------------FWSALFGRGHSPALDGIEARAWEPYDPSIYNL-GAVAASGETVT--------PHDALQVSAVFAS 58 (457) T ss_pred Cc-------------hhhhhhcccccccccccccccccccchHHHhh-cccccCCceec--------hHHhhccHHHHHH Confidence 22 22334444333322222221122122211110 01111121111 1234467999999 Q ss_pred HHHhhceeeecCCCCceeeeecccccccHHHH-HHHHHHhh-------hHHHHHHHHHHHhhcCceeEEEeecCCCCCee Q lcl|Aclame:pro 84 LDIIADECTIPNENGNIVDVVTKDIELAKAIL-SYLDYVIN-------IEKNAYPIIRNMIKYGDMFLHILEKGSDGTIE 155 (533) Q Consensus 84 Id~Ivneaiv~d~~~~~v~v~l~~~e~s~si~-~~i~~ll~-------f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~ 155 (533) |+.|++.+=.. |+.+-.++-.-...+. ..+..+++ .....+..++.+++.|+.|..+..+ .+.+. T Consensus 59 v~~Ia~~iA~l-----p~~~~~~~~~~~~~~~~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~~--~g~~~ 131 (457) T protein:vir:13 59 VRLLSETIATL-----PLSTYSKRGGSRKEIVTPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWQ--GPNIV 131 (457) T ss_pred HHHHHHhhccC-----ceEEEEecCCcccccccchHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec--CCcEE Confidence 99999773322 2222111101111111 12334433 3346777788888999999876443 46789 Q ss_pred eeEEcCcceeeEEeeccCc---EEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 156 KFQVVSPYIFSKRYNPETD---TWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRL 232 (533) Q Consensus 156 elr~ldP~~ik~v~d~~g~---~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm 232 (533) +|.+|+|.+|.++++..+. ..|+.|.... ++.......+++.+|||+......+. -+|+|-|..|.+.+..... T Consensus 132 ~l~~l~p~~v~v~~~~~~~~~~~~~~~y~~~~--~~~~~~~~~~~~~diih~~~~~~~~~-~~G~s~i~~~~~~i~~~~~ 208 (457) T protein:vir:13 132 GLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDA--DGNEVLLGWFTPRDVLHIPGMMLPGD-FVGCSPISYARESIGLALA 208 (457) T ss_pred EEEEEccCceEEEEecCCCccceeEEEEEEec--CCceeeEEeeCccceEEecCCCCCCc-cccccHHHHHHHHHHHHHH Confidence 9999999999998876654 3344443211 11122234577899999986655542 3899999999999988888 Q ss_pred HHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCC Q lcl|Aclame:pro 233 MEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRR 312 (533) Q Consensus 233 ~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~ 312 (533) +++...-+=---+-.+-++.++ +.+-+...++..+.+...|+. .++ .|.+ + .| + . T Consensus 209 ~~~~~~~~f~ng~~p~gil~~~-~~ls~e~~~~~~~~~~~~~~g---~~n-ag~~---------~-vl-----~-----~ 263 (457) T protein:vir:13 209 AQKYGSKFFANGAMPGAVVEVP-GTMSEEGLARAREAWRAANSG---VDN-AHRV---------A-LL-----T-----E 263 (457) T ss_pred HHHHHHHHHhcCCCcceEEEcC-CCCCHHHHHHHHHHHHHHhcC---ccc-cCcc---------e-ec-----C-----C Confidence 8874433222222223333333 455544444444444333321 111 1222 1 11 1 2 Q ss_pred cceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCcc-chhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhh Q lcl|Aclame:pro 313 AVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVN-AKNTLATQDIKFNNT-IKRIQGFFVEELERMVRM 388 (533) Q Consensus 313 gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~g-r~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLil 388 (533) |.+++.|.=. .+.-++=.+|....+.++++||...|+.-.+.. -++.+....+.|.++ |.-+..++++.|.+.|+. T Consensus 264 g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~~~f~~~tl~P~~~~ie~~ln~~L~~ 343 (457) T protein:vir:13 264 GAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFA 343 (457) T ss_pred CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC Confidence 4455544211 112233355888999999999999997533322 224455556668775 677778888888888876 Q ss_pred ccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccc Q lcl|Aclame:pro 389 NKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFG 468 (533) Q Consensus 389 k~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~ 468 (533) +.. ..-..+.|..+. +... -++.|.+++..+ -+..-||..++=. .++-.++. .+..| T Consensus 344 ~~~--~~~~~i~fd~~~----l~~~-D~~~r~~~~~~~----------~~~G~~T~NE~R~-----~~gl~Pi~-~g~~d 400 (457) T protein:vir:13 344 ETA--DRFRFVKFNLDE----IKRG-APKERMELWSLG----------LQNGIYSIDEVRA-----AEDMTPLP-DGLGE 400 (457) T ss_pred ccc--cCceeEEeechh----hhcc-CHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCCC-CCccc Confidence 532 122234554333 2211 223455554432 1234456433211 12222221 11112 Q ss_pred cccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 469 EETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) +-..|. +....+.+.+....+.... + +....+.+-+...+-..+.++++ .+.+|+. T Consensus 401 ~~~~~~-n~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~g~~d~~~~~---~~~~~~~ 456 (457) T protein:vir:13 401 KYRVPL-NLGEVGEEPEPEPAPAPPA----I-EPPAEEPDEEPEPEGKPDDEGAT---EEDDEDD 456 (457) T ss_pred ceeecc-ccccccccccccccCCCCC----C-CCCccccCCCCCCCCCCccccCC---CCccccc Confidence 211111 0000001000000000000 0 00000101111111111111111 1222222 No 50 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=99.51 E-value=5.3e-13 Score=87.87 Aligned_cols=379 Identities=13% Similarity=0.103 Sum_probs=180.3 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) |. ++.|. + .++.......+... .+....+.. ++.. -+.+.+.+.|-| T Consensus 1 Mg---~f~~~---------------~-~~~~~~~~~~~~~~--~~~~~~~~~----~~~~--------v~~~~~l~~~~v 47 (382) T protein:vir:48 1 MP---IFNLA---------------T-ESPPDNQGGFFDVV--DSDFLASLK----GNEW--------VSAETALRNSDL 47 (382) T ss_pred Cc---ccccc---------------c-cCCcccccccccch--hhhcccccc----CCcc--------cchHhhhccHHH Confidence 21 11110 0 01111111111111 111110000 1111 111233467999 Q ss_pred HHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEc Q lcl|Aclame:pro 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVV 160 (533) Q Consensus 81 ~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~l 160 (533) .+||+.|++.+-... +.+.-+. .+.+...--..+.-....+.++..+++.|+.|..++.|. .+-+.+|.+| T Consensus 48 ~~~i~~ia~~ia~~~-----~~~~~~~---~~~L~~~PN~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~-~G~~~~l~~i 118 (382) T protein:vir:48 48 FSIINQLSNDLATVK-----LITSRKK---LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNE-NGRDMKWEYL 118 (382) T ss_pred HHHHHHHHHhhccCc-----eeeecch---hhhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECC-CCcEEEEEEE Confidence 999999998753222 1111110 000100001123456677888999999999999988764 3458899999 Q ss_pred CcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 SPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLY 240 (533) Q Consensus 161 dP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIy 240 (533) +|.+|+++.+..+.+.+|.|+... ...+....+++++|+|+....+.+. -+|+|.|..|++.+.....+++...-+ T Consensus 119 ~~~~v~v~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~evih~~~~~~~~~-~~G~s~l~~~~~~i~~~~~~~~~~~~~ 194 (382) T protein:vir:48 119 RPSQVSFNRLDNKDGIYYNITFDD---PRIPPKQHVPQNDVLHFRLLSVDGG-MTSVSPLMALSRELDIQKASGNLTINS 194 (382) T ss_pred cCceeEEEEcCCCCeEEEEEEecC---ccccceeEEcCccEEEecCCCCCCc-cccccHHHHHHHHHHHHHHHHHHHHHH Confidence 999999999999988888764432 1223445678899999986555442 589999999999999998888865554 Q ss_pred HHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecC Q lcl|Aclame:pro 241 RVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQ 320 (533) Q Consensus 241 Ri~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLp 320 (533) ----+-.+-++.++- .+-+..+++..+..... +.+ .|.+. .++ .|.+++.|. T Consensus 195 ~~ng~~p~~il~~~~-~~~~e~~~~~~~~~~~~------~~n-~g~~~----------vl~----------~g~~~~~l~ 246 (382) T protein:vir:48 195 LKNALNANGILKIKG-GGLLDFKTKLSRSRQAM------KQM-QGGPL----------VLD----------DLEDFTPLE 246 (382) T ss_pred HhccCCCceEEEeCC-CCChHHHHHHHHHHHhh------ccC-CCCee----------EcC----------CCceEEEcc Confidence 444444455555543 33344444444333221 122 23321 111 244555553 Q ss_pred CC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccce Q lcl|Aclame:pro 321 GS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDF 397 (533) Q Consensus 321 G~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew 397 (533) -. .+.-++-.+|..+.+++++|||...|+..++.. .+.-.-..|.+ .|.-+.+.+.+.|...|...-.. ++ T Consensus 247 ~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~---~~~~~~~~~~~~~l~p~~~~i~~~l~~~l~~~~~~---~~ 320 (382) T protein:vir:48 247 IKSNVSQLLKQADWTTGQFAKVYGIPDNVVGGQGDQQ---SSLEMSSDLYSKAVSRYLRPFLSELSQKLSCDVDA---DI 320 (382) T ss_pred CChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh---hh Confidence 11 233345578889999999999999998533322 22222223443 45556666666666665422100 00 Q ss_pred eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhc Q lcl|Aclame:pro 398 RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFL 477 (533) Q Consensus 398 ~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~ 477 (533) ...+..+.+ -++.+++-| ++- +++...+..+.-...+.-+++. T Consensus 321 ~~~~~~~~~--------~~~~~~~~l----------------~~~--g~~t~~e~r~~l~~~g~~~~~~----------- 363 (382) T protein:vir:48 321 FPAVDPTGS--------NYISRINSL----------------VKT--GTLAQNQGLYILQQAEILPKEL----------- 363 (382) T ss_pred hhhhccchh--------HHHHHHHHH----------------hhc--CccCHHHHHHHHhhCCCCCcch----------- Confidence 001111111 111112111 110 0111111111111111111100 Q ss_pred CccCCcccccCCCcccccCCCCCccCCCccCcCc Q lcl|Aclame:pro 478 GERGSPIESPRGRTEFDFGTEGGEELGGELNLGG 511 (533) Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (533) +....+ .+| ..-|.+.++ . T Consensus 364 ~~~~~~-~~~-----~~GGd~~~~---------~ 382 (382) T protein:vir:48 364 PNGENP-NST-----LKGGEEDGQ---------D 382 (382) T ss_pred hhhhcC-CCC-----CCCCCCCCC---------C Confidence 000000 000 000011111 1 No 51 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=99.51 E-value=1.9e-12 Score=84.89 Aligned_cols=404 Identities=12% Similarity=0.067 Sum_probs=194.8 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCC-CccccchhhcccccCccccchHHHHHHHHHHhhcChh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINM-YHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPL 79 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~-~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PE 79 (533) |.-|.+ .....+..+.+. .....+ . .++-+..... +..- .+..+|. T Consensus 1 Mg~f~~------------------------~~~r~~~~~~~~~~~~~~~-~--~~~~~~~~~~----~~~~--~al~~~~ 47 (416) T protein:vir:81 1 MGIFYK------------------------NEKRDLQYNEDDLQMMVQT-L--PGFQGTKLRQ----YKDI--EAIRHSD 47 (416) T ss_pred CCcccc------------------------cccccccCCCcchhHHHHH-h--ccccccCccc----cchh--hhhcchH Confidence 222111 000101111110 001110 0 0000101100 1111 2335789 Q ss_pred HHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecCCC Q lcl|Aclame:pro 80 ISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKGSD 151 (533) Q Consensus 80 V~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~~k 151 (533) |.+||+.|++.+-. .|+.+.-+. +. ...+.+..+|+ -....+..+..++.+|+.|..++.+. . T Consensus 48 v~~cv~~Ia~~iA~-----~p~~~~~~~-~~--~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~-~ 118 (416) T protein:vir:81 48 IFTAVMMIASDLAR-----MPIRVTVNG-QI--NYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK-T 118 (416) T ss_pred HHHHHHHHHHhhcc-----CceEEecCc-cc--cccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECC-C Confidence 99999999876442 233332111 11 11223344442 34567888999999999999987764 3 Q ss_pred CCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHH Q lcl|Aclame:pro 152 GTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLR 231 (533) Q Consensus 152 ~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLr 231 (533) +-+.+|..|+|.+|+++++..|...|+.+... .........+++++|||+.+..+++ -+|+|-|+.|++.+.... T Consensus 119 G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~evihir~~~~d~--~~G~s~i~~~~~~i~~~~ 193 (416) T protein:vir:81 119 GEPMNLTFRKTSEIELKSDARGRLYYFHQRID---SNGNNIERNVKFEDMLDIKFYSLDG--INGLSLLDTLSRTIESDN 193 (416) T ss_pred CcEEEEEEEcCceeEEEECCCccEEEEEEEec---CCCceeEEEEccccEEEeccCCCCC--ccccCHHHHHHHHHHHHH Confidence 44789999999999999998888766644211 0111223467889999998654443 489999999999998888 Q ss_pred HHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHH-HHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccC Q lcl|Aclame:pro 232 LMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTN-IAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGD 310 (533) Q Consensus 232 m~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~-im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g 310 (533) ..++...-+=---+-.+-++.++ |.+...++.+-+++ +...|. -..+.|.+ + .++ T Consensus 194 ~~~~~~~~~f~ng~~~~gil~~~-~~~~~~~~~~~~~~~~~~~~~----g~~nag~~---------~-vl~--------- 249 (416) T protein:vir:81 194 NGKDFLNNFLRNGTHAGGILKMK-GVLDNKKARDRAREEFHKSFS----GTKQAGKV---------V-VLD--------- 249 (416) T ss_pred HHHHHHHHHHhccCCCcEEEEeC-CCCCCHHHHHHHHHHHHHHhc----CccccCce---------e-ecC--------- Confidence 88775543322223233444444 44544444444443 333321 01111222 1 111 Q ss_pred CCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh Q lcl|Aclame:pro 311 RRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMVRM 388 (533) Q Consensus 311 ~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qLil 388 (533) .|.+++.|.=. .+.-++-.+|.++.+.+++|||.+.|+.+.. + +.+....+-|..-|.-+..++++.|-..|.. T Consensus 250 -~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~--~~~~~~~~~~~~~l~P~~~~ie~~ln~~l~~ 325 (416) T protein:vir:81 250 -ESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA-N--MSITDANLDYLSTLKPYITCVCAELNFKFND 325 (416) T ss_pred -CCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC-C--ccHHHHHHHHHHHHHHHHHHHHHHHhhhccc Confidence 24455555321 1233455677889999999999999975332 2 2233334445555666666777777777642 Q ss_pred ccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccc Q lcl|Aclame:pro 389 NKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFG 468 (533) Q Consensus 389 k~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~ 468 (533) .. +...+.|..+ .+.... .+.|.+++..+ -+..-||..|.-. .++ ++|-++-+ T Consensus 326 ~~----~~~~~~f~~~----~l~~~D-~~~~~~~~~~~----------~~~G~~T~NE~R~-----~~g---l~p~~~gd 378 (416) T protein:vir:81 326 EY----VNREFKFDTT----EIRVVD-EKTQAEIDKIN----------IDSGKMNIDEIRQ-----RDG---LAPIPGGN 378 (416) T ss_pred cc----cCceEEEech----hhhccC-HHHHHHHHHHH----------HhCCCcCHHHHHH-----HhC---CCCCCCCC Confidence 21 1223444322 222211 23344443331 1234566543221 122 22222222 Q ss_pred cccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCc Q lcl|Aclame:pro 469 EETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNL 509 (533) Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (533) +..-+ ......|++..........+......-|||-|= T Consensus 379 ~~~~~---~~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~n~ 416 (416) T protein:vir:81 379 GSIHR---VDLNHVNIELVDEYQMNKSRATDKKLKGGEENE 416 (416) T ss_pred cceEe---ecccccccccccccCcccccccccccCCCCCCC Confidence 11111 112222333332222223232223333333111 No 52 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=99.51 E-value=1.9e-12 Score=84.89 Aligned_cols=404 Identities=12% Similarity=0.067 Sum_probs=194.8 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCC-CccccchhhcccccCccccchHHHHHHHHHHhhcChh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINM-YHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPL 79 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~-~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PE 79 (533) |.-|.+ .....+..+.+. .....+ . .++-+..... +..- .+..+|. T Consensus 1 Mg~f~~------------------------~~~r~~~~~~~~~~~~~~~-~--~~~~~~~~~~----~~~~--~al~~~~ 47 (416) T protein:vir:45 1 MGIFYK------------------------NEKRDLQYNEDDLQMMVQT-L--PGFQGTKLRQ----YKDI--EAIRHSD 47 (416) T ss_pred CCcccc------------------------cccccccCCCcchhHHHHH-h--ccccccCccc----cchh--hhhcchH Confidence 222111 000101111110 001110 0 0000101100 1111 2335789 Q ss_pred HHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecCCC Q lcl|Aclame:pro 80 ISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKGSD 151 (533) Q Consensus 80 V~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~~k 151 (533) |.+||+.|++.+-. .|+.+.-+. +. ...+.+..+|+ -....+..+..++.+|+.|..++.+. . T Consensus 48 v~~cv~~Ia~~iA~-----~p~~~~~~~-~~--~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~-~ 118 (416) T protein:vir:45 48 IFTAVMMIASDLAR-----MPIRVTVNG-QI--NYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK-T 118 (416) T ss_pred HHHHHHHHHHhhcc-----CceEEecCc-cc--cccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECC-C Confidence 99999999876442 233332111 11 11223344442 34567888999999999999987764 3 Q ss_pred CCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHH Q lcl|Aclame:pro 152 GTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLR 231 (533) Q Consensus 152 ~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLr 231 (533) +-+.+|..|+|.+|+++++..|...|+.+... .........+++++|||+.+..+++ -+|+|-|+.|++.+.... T Consensus 119 G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~evihir~~~~d~--~~G~s~i~~~~~~i~~~~ 193 (416) T protein:vir:45 119 GEPMNLTFRKTSEIELKSDARGRLYYFHQRID---SNGNNIERNVKFEDMLDIKFYSLDG--INGLSLLDTLSRTIESDN 193 (416) T ss_pred CcEEEEEEEcCceeEEEECCCccEEEEEEEec---CCCceeEEEEccccEEEeccCCCCC--ccccCHHHHHHHHHHHHH Confidence 44789999999999999998888766644211 0111223467889999998654443 489999999999998888 Q ss_pred HHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHH-HHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccC Q lcl|Aclame:pro 232 LMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTN-IAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGD 310 (533) Q Consensus 232 m~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~-im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g 310 (533) ..++...-+=---+-.+-++.++ |.+...++.+-+++ +...|. -..+.|.+ + .++ T Consensus 194 ~~~~~~~~~f~ng~~~~gil~~~-~~~~~~~~~~~~~~~~~~~~~----g~~nag~~---------~-vl~--------- 249 (416) T protein:vir:45 194 NGKDFLNNFLRNGTHAGGILKMK-GVLDNKKARDRAREEFHKSFS----GTKQAGKV---------V-VLD--------- 249 (416) T ss_pred HHHHHHHHHHhccCCCcEEEEeC-CCCCCHHHHHHHHHHHHHHhc----CccccCce---------e-ecC--------- Confidence 88775543322223233444444 44544444444443 333321 01111222 1 111 Q ss_pred CCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh Q lcl|Aclame:pro 311 RRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMVRM 388 (533) Q Consensus 311 ~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qLil 388 (533) .|.+++.|.=. .+.-++-.+|.++.+.+++|||.+.|+.+.. + +.+....+-|..-|.-+..++++.|-..|.. T Consensus 250 -~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~--~~~~~~~~~~~~~l~P~~~~ie~~ln~~l~~ 325 (416) T protein:vir:45 250 -ESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA-N--MSITDANLDYLSTLKPYITCVCAELNFKFND 325 (416) T ss_pred -CCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC-C--ccHHHHHHHHHHHHHHHHHHHHHHHhhhccc Confidence 24455555321 1233455677889999999999999975332 2 2233334445555666666777777777642 Q ss_pred ccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccc Q lcl|Aclame:pro 389 NKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFG 468 (533) Q Consensus 389 k~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~ 468 (533) .. +...+.|..+ .+.... .+.|.+++..+ -+..-||..|.-. .++ ++|-++-+ T Consensus 326 ~~----~~~~~~f~~~----~l~~~D-~~~~~~~~~~~----------~~~G~~T~NE~R~-----~~g---l~p~~~gd 378 (416) T protein:vir:45 326 EY----VNREFKFDTT----EIRVVD-EKTQAEIDKIN----------IDSGKMNIDEIRQ-----RDG---LAPIPGGN 378 (416) T ss_pred cc----cCceEEEech----hhhccC-HHHHHHHHHHH----------HhCCCcCHHHHHH-----HhC---CCCCCCCC Confidence 21 1223444322 222211 23344443331 1234566543221 122 22222222 Q ss_pred cccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCc Q lcl|Aclame:pro 469 EETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNL 509 (533) Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (533) +..-+ ......|++..........+......-|||-|= T Consensus 379 ~~~~~---~~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~n~ 416 (416) T protein:vir:45 379 GSIHR---VDLNHVNIELVDEYQMNKSRATDKKLKGGEENE 416 (416) T ss_pred cceEe---ecccccccccccccCcccccccccccCCCCCCC Confidence 11111 112222333332222223232223333333111 No 53 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=99.50 E-value=1.3e-12 Score=85.82 Aligned_cols=424 Identities=11% Similarity=0.095 Sum_probs=200.2 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccch---hhcccccCccccchHHHHHHHHHHhhcC Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATA---GYASRFYGGIEFNRFFLYDMYDRMDYTD 77 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~---~~~~~~ygg~~~n~~~li~~YR~m~~~~ 77 (533) |.++=+|.|..+++ +.++....-.+...+ ..++....|..-|. ..+.+. T Consensus 1 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~--------~~al~~ 52 (454) T protein:vir:93 1 MWNLLRRTRKNQKS--------------------GRDVREAGWTSLFQAVAEPFAGAWQQGVKADP--------EAVLSF 52 (454) T ss_pred CCCccccCcccccc--------------------cccccchhhhhhhhhhhhhhcchhhcCcccCh--------HHhhcc Confidence 44433333332222 111111000000000 00011111221121 133457 Q ss_pred hhHHHHHHHhhceeeecCCCCceeeeeccccc-ccHHHHHH-HHHH-------hhhHHHHHHHHHHHhhcCceeEEEeec Q lcl|Aclame:pro 78 PLISTVLDIIADECTIPNENGNIVDVVTKDIE-LAKAILSY-LDYV-------INIEKNAYPIIRNMIKYGDMFLHILEK 148 (533) Q Consensus 78 PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e-~s~si~~~-i~~l-------l~f~~~~~e~~R~wyvDGr~~~~kiid 148 (533) |.|..||+.|++.+=. .|+.|--.+.+ ....+.+- +..| +.-....+.++..++++|+.|..++.+ T Consensus 53 ~~V~~~v~~Ia~~iA~-----lp~~~~~~~~~g~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~ 127 (454) T protein:vir:93 53 HAVFACISLISQDIAK-----MRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRN 127 (454) T ss_pred HHHHHHHHHHHHhhcc-----CceEEEEeccCCccchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEEC Confidence 8999999999976332 23322211111 11112222 1222 234567888889999999999998876 Q ss_pred CCCCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHH Q lcl|Aclame:pro 149 GSDGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWN 228 (533) Q Consensus 149 ~~k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~N 228 (533) .. +-+.+|.+|+|.+|+++.+..|..+ |.|+... +...+....+++++|+|+..+...+ +-+|+|-+..|.+.+. T Consensus 128 ~~-G~~~~L~~i~~~~v~v~~~~~g~~~-y~~~~~~--~~~~~~~~~~~~~eViH~k~~~~~~-~~~G~sp~~~~~~~i~ 202 (454) T protein:vir:93 128 AR-GQIKELRILDWNRVEPLVADDGEVF-YRITPDR--NCGITEAVTVPAREVIHDRFNCFFH-PLIGLPPVYAAGLAAT 202 (454) T ss_pred CC-CcEEEEEEEcCcceEEEEcCCCcEE-EEEEecc--ccccceeEEecCcceEEeccCCCCC-CceeccHHHHHHHHHH Confidence 43 5588999999999999998877654 4443321 1222334567889999998654333 3599999999999999 Q ss_pred HHHHHHHHHHHHHHhccccceeeecCC-CCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhccc Q lcl|Aclame:pro 229 QLRLMEDALMLYRVVRSVDRRVFYVDV-GNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPR 307 (533) Q Consensus 229 qLrm~EdalVIyRi~RAPeRr~fyidv-Gnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlpr 307 (533) ....+++...- ....--+.-..+.+ +.|-+.+.++ +...++...--+ +.|.+. +++ T Consensus 203 ~~~~~~~~~~~--~f~ng~~p~gil~~~~~l~~e~~~~----~~~~~~~~~~g~-n~g~~~----------vl~------ 259 (454) T protein:vir:93 203 QGHHIQENSTS--FFRNGGRPSGVIEIPGSITEENAKK----LKSNWDSGYTGE-NAGKTA----------ILS------ 259 (454) T ss_pred HHHHHHHHHHH--HHhccCCccEEEecCCCCCHHHHHH----HHHHHHHHhccc-ccCCce----------ecc------ Confidence 99999985542 22221222233333 4554443333 233333222111 233321 121 Q ss_pred ccCCCcceeeecCC--CCCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhh Q lcl|Aclame:pro 308 RGDRRAVEIDILQG--SKVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELER 384 (533) Q Consensus 308 R~g~~gtEi~TLpG--~nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~ 384 (533) .|.+++.|.= ..+.-++-.+|....+.+++|||...|+...+. ..+.+......|.+ -|.-+..++++.|.+ T Consensus 260 ----~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~-t~sn~e~~~~~f~~~~l~P~~~~ie~~ln~ 334 (454) T protein:vir:93 260 ----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPP-SSDNVEALEQQYYSQCLQTLIESIELLLDE 334 (454) T ss_pred ----CCceEEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2445554421 122234445678899999999999999854432 22334444445655 466677778877777 Q ss_pred hhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCC Q lcl|Aclame:pro 385 MVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDT 464 (533) Q Consensus 385 qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~ 464 (533) .|+. ..+..+.|..+. +... -++.|++.+..+ -+..-||..|+-. .++-.++. T Consensus 335 ~L~~-----~~~~~~~f~~~~----ll~~-D~~~r~~~~~~~----------~~~G~~T~NE~R~-----~~gl~pi~-- 387 (454) T protein:vir:93 335 ALET-----GENESTEFDVTT----LLRM-DSERRMKTLGDA----------VKNTLLTPNEARK-----RENLPPLA-- 387 (454) T ss_pred hhcC-----CCCcEEEeechh----hhcc-CHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCCC-- Confidence 7653 344455664433 2221 123455554442 1334566533321 12222221 Q ss_pred cccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 465 GGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) +-|+=..+. ...|+.....+...+....+.+ . -...+++...++|+. ..+|.+ T Consensus 388 -ggD~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~d~~~----~~~e~~ 440 (454) T protein:vir:93 388 -GGDALYLQQ-----QNYSLEALSRRDAREDPFASSG----K--TASVPQAVAASDGNK----AITETE 440 (454) T ss_pred -CCCeeeecc-----CccchHhhhccCcccCCCCCCc----c--CCCCCCCCCCCCCCC----CccCCc Confidence 111110010 0001100000000000000111 0 111122222233333 222332 No 54 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=99.50 E-value=3.3e-13 Score=88.98 Aligned_cols=383 Identities=14% Similarity=0.084 Sum_probs=180.5 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) |+-|.+|++.... +... ..+........+.-.....++ .|.. +.. +.+.++|-| T Consensus 3 m~~~~~~~~~~~~---------------~~~~-~~~~~~~~~~~~~~~~~~~~~--~g~~------v~~--~~al~~~~v 56 (392) T protein:vir:74 3 LPILNFINQTNDP---------------PEAG-SVQSYFPDGNDAQIMESLLGD--NNEW------VSA--RAALRNSDL 56 (392) T ss_pred chhhhhhhcccCc---------------cccc-ccccccccCchhhhhhhccCC--CCcc------cch--hhhhcchHH Confidence 3333333322111 1111 111111110111100111111 0111 111 233467999 Q ss_pred HHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHH----HhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeee Q lcl|Aclame:pro 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDY----VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEK 156 (533) Q Consensus 81 ~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~----ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~e 156 (533) .+||+.|++.+=.. |+.+.-+.. +.+.+ .+.-....+.++..+++.|+.|..++.|. ++.+.+ T Consensus 57 ~~~v~~ia~~ia~l-----p~~~~~~~~-------~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~-~G~~~~ 123 (392) T protein:vir:74 57 FSIILQLSSDLAIV-----KINAEKKKN-------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA-NGADMK 123 (392) T ss_pred HHHHHHHHHhhccC-----ceeeccchh-------hhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECC-CCcEEE Confidence 99999999875321 222211110 11111 22334567778889999999999988764 456899 Q ss_pred eEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 FQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDA 236 (533) Q Consensus 157 lr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Eda 236 (533) |.+|||.+|++.++..+.+.+|.|... ++.......+++++|+|+....+++. -+|+|.|..|+..+.....+++. T Consensus 124 L~~i~~~~v~v~~~~~~~~~~y~~~~~---~~~~~~~~~~~~~evih~~~~~~~~~-~~G~s~i~~~~~~i~~~~~~~~~ 199 (392) T protein:vir:74 124 WEYLRPSQVNTYYFEYENGMYYNITFD---DPKIEPILQAPQSDLIHMKLLSIDGG-KTGISPLYSLRRESKIQRASDRL 199 (392) T ss_pred EEEEcCceeEEEEcCCCceEEEEEEec---CCccceeEEEcCccEEEecCCCCCCc-cccccHHHHHHHHHHHHHHHHHH Confidence 999999999999999998888776433 12233445688899999976555542 48999999999999999888885 Q ss_pred HHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCccee Q lcl|Aclame:pro 237 LMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEI 316 (533) Q Consensus 237 lVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi 316 (533) ..-+=---+-.+-++.++-+..+..++. ..+...|... .+.|.+. +| ..|+++ T Consensus 200 ~~~~f~ng~~p~~il~~~~~~~~~~~~~---~~~~~~~~~~----~n~g~~~----------vl----------~~g~~~ 252 (392) T protein:vir:74 200 TISSLNSSLNVPGVLTVKGGGLLSDKDK---ASRSRSFMKR----SRSGGPV----------VL----------DDLEEF 252 (392) T ss_pred HHHHHhccCCCceEEEeCCCCCchHHHH---HHHHHHHhcc----ccCCCee----------ec----------CCCceE Confidence 5433323333344444544433333322 2233333311 1223321 12 125666 Q ss_pred eecCCC-C-CChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHH-HHHHHHHHHHHHHHhhhhhhccCCC Q lcl|Aclame:pro 317 DILQGS-K-VDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFN-NTIKRIQGFFVEELERMVRMNKEFA 393 (533) Q Consensus 317 ~TLpG~-n-lg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~-kfI~rLr~~F~~~l~~qLilk~i~t 393 (533) +.|.=. . +.-++=.+|..+.+.+++|||...++....... ...+-..|. ..+.-+.+.+.+.|.+.|... T Consensus 253 ~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~---~~e~~~~~~~~~l~p~~~~ie~~l~~~l~~~---- 325 (392) T protein:vir:74 253 TALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQS---SIQQISGMYASALNRYLRPAISELEYKLSDH---- 325 (392) T ss_pred EEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccc---HHHHHHHHHHHHHHHHHHHHHHHHHHhccch---- Confidence 666321 2 223455788889999999999999975332221 111122243 345566667777777776422 Q ss_pred ccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccch Q lcl|Aclame:pro 394 DQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTP 473 (533) Q Consensus 394 ~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~ 473 (533) +++++. . +-+... ..+...+.. .+ +-.-+|..+. ++ +.. ..+..+.+--..+. T Consensus 326 ---~~~~~~--~----~~~~d~-~~~~~~~~~---l~-------~~g~~t~nea--r~-~~~--~~g~~pne~r~~en-- 378 (392) T protein:vir:74 326 ---ISVNMR--P----AIDPLG-DNYLSTIST---AT-------RWGALAENQA--TF-VLQ--EAGYIPKDLPAPEN-- 378 (392) T ss_pred ---hcccch--h----hhcCCH-HHHHHHHHH---HH-------hCCCcCHHHH--HH-HHH--hCCCCccccchhcC-- Confidence 111110 0 000000 011111111 00 0011222111 01 111 11111100000000 Q ss_pred hhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCch Q lcl|Aclame:pro 474 ADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFE 517 (533) Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (533) .|+ .+||+ +.+|.+ T Consensus 379 ------------l~~-------------~~~Gd-----~~~p~p 392 (392) T protein:vir:74 379 ------------TNK-------------KTTGQ-----SNEPVP 392 (392) T ss_pred ------------CCC-------------CCCCC-----CCCCCC Confidence 000 01110 111111 No 55 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=99.49 E-value=1.6e-12 Score=85.28 Aligned_cols=395 Identities=13% Similarity=0.116 Sum_probs=198.4 Q ss_pred hcccccccCcccC--CCCcccCCC-CCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCC Q lcl|Aclame:pro 20 LSPMYGMGAPHGA--GGSSMIPIN-MYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNE 96 (533) Q Consensus 20 ~~~~~s~~~p~~~--~gas~i~~~-~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~ 96 (533) |++.-.++..|.. +....-+.+ ..++.. ..+..|.+...+ .+.+.|-|.+||+.|++.+-.+. T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~----------~a~~~~~V~~ci~~ia~~ia~lp- 66 (409) T protein:vir:96 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSP---WKNKSFWGVINN----------TLETNETIFSAITKLSNSMASLP- 66 (409) T ss_pred CccccchhhhhhHHhhhhhcccccccccccc---ccCccccccchh----------hHhhhHHHHHHHHHHHHhhhhCc- Confidence 4333333322210 000000100 011111 111222222211 23457899999999997754322 Q ss_pred CCceeeeecccccccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEE Q lcl|Aclame:pro 97 NGNIVDVVTKDIELAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKR 168 (533) Q Consensus 97 ~~~~v~v~l~~~e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v 168 (533) +.+- .+.+..+ ..+..+| .-....+.++..++++|+.|..++.+. .+-+.+|.+|+|.+|+++ T Consensus 67 ----~~~~-~~~~~~~---~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-~G~~~~L~~l~~~~v~v~ 137 (409) T protein:vir:96 67 ----LKMY-EDYKVVN---TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI-YHQPSKLFLLNPDVVEML 137 (409) T ss_pred ----eEEe-ecccccc---hhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECC-CCcEEEEEEEcCceeEEE Confidence 2221 1112111 1223333 334566788889999999999877664 345889999999999999 Q ss_pred eeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccc Q lcl|Aclame:pro 169 YNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDR 248 (533) Q Consensus 169 ~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeR 248 (533) .+..+...+|.|... .+....+++++|+|+.+....+ +-+|+|.|..+.........++.. ..+.-.+.| . T Consensus 138 ~~~~~~~~~y~~~~~------~g~~~~~~~~evih~r~~~~~~-~~~G~s~l~~~~~~i~~~~~~~~~-~~~~~~~~~-~ 208 (409) T protein:vir:96 138 IENQSRELYYSIHAA------TGNKLIVHNMDMLHFKHIVASN-MVQGISPIDVLKNTTDFDNAVRTF-NLTEMQKPD-S 208 (409) T ss_pred EeCCCcEEEEEEEcC------CceEEEEccccEEEeCCCCCCC-ccccccHHHHHHHHHHHHHHHHHH-HHHhcCCCc-e Confidence 998887767665432 2344568889999997533222 348999998888777766666554 344433333 1 Q ss_pred eeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC--CCCh Q lcl|Aclame:pro 249 RVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--KVDL 326 (533) Q Consensus 249 r~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--nlg~ 326 (533) ++...-+.+-+.+++...+.+.+.+. + .|.+. .+ ..|.+++.|.-. .+.- T Consensus 209 -~i~~~~~~l~~e~~~~~~~~~~~~~~------n-~g~~~----------vl----------~~g~~~~~l~~~~~d~q~ 260 (409) T protein:vir:96 209 -FMLKYGSNVSTEKRQQVLEDFKQYYE------E-NGGIL----------FQ----------EPGVEIEPLPKKYVSEDI 260 (409) T ss_pred -eEEecCCCCCHHHHHHHHHHHHHHhh------c-CCCee----------ec----------CCCceEEEcCCChhHHHH Confidence 22223346666665555555544432 2 23321 11 135667766321 2223 Q ss_pred HHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCccceeEEecCCc Q lcl|Aclame:pro 327 AEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSN 405 (533) Q Consensus 327 i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn 405 (533) ++-.+|..+.+.++++||...|+...+.. .+.+...-+.|..+ |.-+..++.+.|.+.|+....... ...|.|..+. T Consensus 261 ~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~-~s~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~-g~~i~fd~~~ 338 (409) T protein:vir:96 261 VASENLTRERVANVFQLPSIFLNARSNTN-FAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREK-NRYFKFNVKS 338 (409) T ss_pred HHHHHHHHHHHHHHhCCCHHHhCCCCCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccC-cceEEeechh Confidence 44456777889999999999998644322 22333444457666 777777888888887764332211 1235555332 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCccc Q lcl|Aclame:pro 406 SIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIE 485 (533) Q Consensus 406 ~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (533) +.... +..|.+++..+- +..-||..+.=. .++..++ ++-|+=..+ ....|++ T Consensus 339 ----ll~~d-~~~~~e~~~~~~----------~~G~~T~NE~R~-----~~g~~pi---~ggD~~~~~-----~n~~~~~ 390 (409) T protein:vir:96 339 ----YLRAD-SATQAEVYFKAV----------RSGYYTINDIRE-----WEDLPPV---EGGDKPLIS-----GDLYPID 390 (409) T ss_pred ----hhccC-HHHHHHHHHHHH----------hCCCCCHHHHHH-----HhCCCCC---CCcceeeec-----ccccccc Confidence 33222 344555554421 223455433211 1222222 222221111 1112332 Q ss_pred ccCCCcccccCCCCCccCCCccCcCcccCCchhhcC Q lcl|Aclame:pro 486 SPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETG 521 (533) Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 521 (533) .+... + ....||+-|- ++ | T Consensus 391 ~~~~~---~-----~~~~gG~~n~----~e-----~ 409 (409) T protein:vir:96 391 TPLEL---R-----KSLKGGDKNV----NE-----S 409 (409) T ss_pred cchhh---c-----ccccCCCCCc----CC-----C Confidence 22111 0 1112222111 00 1 No 56 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=99.48 E-value=1.3e-13 Score=91.16 Aligned_cols=407 Identities=14% Similarity=0.089 Sum_probs=194.0 Q ss_pred hcccccccCcccCCCCcccCCC-----------CCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhh Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMIPIN-----------MYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIA 88 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i~~~-----------~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Iv 88 (533) |++.++= ...+++..+.+ ++++.... .+.|+...+. .-+ ..+. +.+.|-|.+||+.|+ T Consensus 1 ~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~g-~~v-~~~~-al~~~~V~~~i~~ia 69 (434) T protein:vir:43 1 MSKSLGK----VLSSATSAPRSSLFGWGGKTIRLTDGAFWS----QFLGRESSSG-KKV-TVDK-AMKLSAVWACVRLIS 69 (434) T ss_pred Cccchhh----hhhhcccccchhhhcccccccccCchHHHH----HHhcCCccCC-cee-chhh-hhccHHHHHHHHHHH Confidence 4443321 11111112211 11221111 1112111111 001 1222 346799999999999 Q ss_pred ceeeecCCCCceeeeeccccc--ccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeE Q lcl|Aclame:pro 89 DECTIPNENGNIVDVVTKDIE--LAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQ 158 (533) Q Consensus 89 neaiv~d~~~~~v~v~l~~~e--~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr 158 (533) +.+=. .|+.+-..+.+ .....-..+.++| .-....+..+..++++|+.|..+.- . .+-+.+|. T Consensus 70 ~~ia~-----lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~-~-~G~~~~L~ 142 (434) T protein:vir:43 70 TSVAG-----LPLGVYERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRR-A-AGRPAALD 142 (434) T ss_pred Hhhhh-----CceEEEEEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEe-C-CCcEEEEE Confidence 76321 12222111000 0000111233333 2345677788899999999877543 3 46688999 Q ss_pred EcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 VVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALM 238 (533) Q Consensus 159 ~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalV 238 (533) .|+|.+|+++++..|...|+.+.. .+....+++++|+|+.+...++ -+|+|-+..|+..+.....+++... T Consensus 143 ~l~p~~v~~~~~~~g~~~y~~~~~-------~g~~~~~~~~eVih~~~~~~dg--~~G~spi~~~~~~i~~~~~~~~~~~ 213 (434) T protein:vir:43 143 FLLPSRVDLECDENGRLKYFYTTK-------KGARREIERTNMLHIPAFTLDG--RIGLSAIRYGVDVFGSVMSAEDAAN 213 (434) T ss_pred EEcCcceEEEEcCCCeEEEEEEec-------CceEEEEccccEEEecCcCCCC--ccccCHHHHHHHHHHHHHHHHHHHH Confidence 999999999999888776665432 2345678899999997644443 4899999999999988888887443 Q ss_pred HHHHhccccceeeecCCC-CCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceee Q lcl|Aclame:pro 239 LYRVVRSVDRRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEID 317 (533) Q Consensus 239 IyRi~RAPeRr~fyidvG-nlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~ 317 (533) -+----+ ++-..+.+. .+.+ ++.+-+++.++++.. -.+.|.+ + ++ + .|.+++ T Consensus 214 ~~f~ng~--~~~gil~~~~~l~~-e~~~~~r~~~~~~~g----~~nag~~---------~-vl-----~-----~g~~~~ 266 (434) T protein:vir:43 214 GTFKNGL--LPTVAFKVDRILQP-AQREEFREYVKSVSG----AMNSGRS---------P-VL-----E-----QGITPE 266 (434) T ss_pred HHHhccC--CcceEEecCCCCCH-HHHHHHHHHHHHhcC----ccccCCc---------c-cc-----C-----CCceEE Confidence 3221112 333344444 4443 444445666555420 0112322 1 22 1 355666 Q ss_pred ecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCcc-chhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCC Q lcl|Aclame:pro 318 ILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVN-AKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFA 393 (533) Q Consensus 318 TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~g-r~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t 393 (533) .|.-. .+.-++-.++..+.+.+++|||...|+...... .++.+...-+-|.++ +.-+-.++.+.|...|+....- T Consensus 267 ~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~s~~e~~~~~f~~~~L~P~~~~ie~~ln~kL~~~~~~- 345 (434) T protein:vir:43 267 TIGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDKGSNWGTGLEQQMLAFLTFSISSITNQIQQCVNKRLLTAPER- 345 (434) T ss_pred EccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhh- Confidence 66321 233344577889999999999999997544321 233344444446554 4444456666676666533211 Q ss_pred ccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhh-hcccCCCCCcccccccc Q lcl|Aclame:pro 394 DQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEA-AGGGGLFDTGGFGEETT 472 (533) Q Consensus 394 ~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~-E~~~~~~~~~~~~~~~~ 472 (533) ..+.+.|..+.. ... -...|.+.+..+- +..-||..|.-....... ++.+..+- -.... T Consensus 346 -~~~~~~fd~~~l----lr~-d~~~r~~~~~~~~----------~~G~~T~NE~R~~~gl~p~~ggD~~~~----~~n~~ 405 (434) T protein:vir:43 346 -IRYYAEFSLEGF----LKA-DSAGRAAWYSTMA----------QNGFMTRNEGRRKENLPELPGGDILTV----QSNLV 405 (434) T ss_pred -cCceEEEechhh----hcc-CHHHHHHHHHHHH----------hCCCcCHHHHHHHhCCCCCCCCCeEee----ccCcc Confidence 124456654432 111 2234555554431 223344322211111110 11111110 01111 Q ss_pred hhhhcCccCCcccccCCCcccccCCCCCcc Q lcl|Aclame:pro 473 PADFLGERGSPIESPRGRTEFDFGTEGGEE 502 (533) Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (533) |....+....+ ..+..++....+...+++ T Consensus 406 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 434 (434) T protein:vir:43 406 PIDQLGQSNKS-QAVRAALMNWFSQPEPQE 434 (434) T ss_pred chhhhhccCCC-cchhhhhhccCCCCCCCC Confidence 22222221111 111112122122211222 No 57 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=99.48 E-value=8.7e-13 Score=86.71 Aligned_cols=404 Identities=13% Similarity=0.047 Sum_probs=201.0 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) |=.+++|++..... ... . ..+.- . ..++....|..-+. + .+...|.| T Consensus 1 m~~~~~~~~~~~~~-------~~~----~------~~~~~----~----~~~~~~~~g~~v~~-------~-~al~~~~v 47 (419) T protein:vir:57 1 MFIPQFWKGRPSEN-------RVN----W------QVVPG----G----MRSSSSQAGVIITP-------E-TALALSAV 47 (419) T ss_pred CcchhhhccCCccc-------ccc----c------ccccc----c----cccccccCCceech-------H-HhhccHHH Confidence 77777777653321 000 0 01110 0 00111111222221 1 22356899 Q ss_pred HHHHHHhhceeeecCCCCceeeeecccccccHHH-H-HHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCC Q lcl|Aclame:pro 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAI-L-SYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGS 150 (533) Q Consensus 81 ~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si-~-~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~ 150 (533) ..||+.|++.+=. .|+.+--.+.+-..++ . ..+.++| ......+.++..+++.|+.|..++.+. T Consensus 48 ~~~i~~ia~~ia~-----lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~- 121 (419) T protein:vir:57 48 RACVTLLAESVAQ-----LPCVLYRRTENGGREIAFDHPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNG- 121 (419) T ss_pred HHHHHHHHHhhcc-----CceEEEEEcCCCceeccccchHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECC- Confidence 9999999986331 1222211000000000 0 1123333 345577888899999999999887764 Q ss_pred CCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHH Q lcl|Aclame:pro 151 DGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQL 230 (533) Q Consensus 151 k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqL 230 (533) .+-+.+|..|+|.+|++..+..+. .||.+.. .+..++.++|+|+.+...++ -+|+|.|..+.+.+... T Consensus 122 ~G~~~~L~pl~~~~v~v~~~~~g~-~~y~~~~---------~~~~~~~~~vih~r~~~~d~--~~G~s~i~~~~~~i~~~ 189 (419) T protein:vir:57 122 RGDITELIPINPHKVIVLKGPDGM-PYYDIPS---------IGEILPMRMVHHIKSFSLDG--YIGTSPIQTNPDVLGLG 189 (419) T ss_pred CCcEEEEEEEcCcceEEEECCCce-EEEEEcC---------CceEEchhhEEEecCcCCCC--cccccHHHHHHHHHHHH Confidence 355889999999999988877664 4454422 12347789999998655553 58999999999998888 Q ss_pred HHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccC Q lcl|Aclame:pro 231 RLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGD 310 (533) Q Consensus 231 rm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g 310 (533) ..+++...-+----+-.+-++..+. .+.....++-...+..++.++.--..+.|.+. ++ T Consensus 190 ~~~~~~~~~~f~ng~~p~gil~~~~-~~~~~~~~e~~~~~~~~~~~~~~g~~nag~~~----------vl---------- 248 (419) T protein:vir:57 190 IAVEQHAAQVFARGTTMSGVIERPF-EAKAIASQAAVDAILAKWTERYGGVRNAFSVG----------ML---------- 248 (419) T ss_pred HHHHHHHHHHHHccCCccEEEEecC-cCCcccCHHHHHHHHHHHHHHhccccccccce----------ec---------- Confidence 8887754433222232233333322 12222333444455555543332222223221 11 Q ss_pred CCcceeeecCCCCCCh---HHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhh Q lcl|Aclame:pro 311 RRAVEIDILQGSKVDL---AEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMV 386 (533) Q Consensus 311 ~~gtEi~TLpG~nlg~---i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qL 386 (533) ..|+++..|.- +..+ ++=.++..+.+++++|||...|+..... ..+.+....+.|.++ |.-+...+++.|-+.| T Consensus 249 ~~g~~~~~l~~-~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~-t~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~l 326 (419) T protein:vir:57 249 QEGMTYKQLSQ-DNEKAQLLQSRQYTVNEVCRLYKVPPHMIQDLQKS-TNNNIEHQGLQYVIYTMLAILKRHESAMMRDL 326 (419) T ss_pred CCCceEEEcCC-ChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhc Confidence 13566666632 2222 3335677789999999999999854432 223444445557665 6777778888888887 Q ss_pred hhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcc Q lcl|Aclame:pro 387 RMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGG 466 (533) Q Consensus 387 ilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~ 466 (533) +..... ..+.+.|..+... . .-++.|.+++..+ -+..-||..|.-. .++..++ ++ T Consensus 327 l~~~~~--~~~~i~fd~~~ll----~-~d~~~~~~~~~~~----------~~~G~~T~NE~R~-----~~gl~p~---~g 381 (419) T protein:vir:57 327 LLPSER--RDFYIEFNVSSLL----R-GDQKSRYESYALG----------RQWGWLSVNDIRR-----MENLTPI---PG 381 (419) T ss_pred cCcccc--CCeEEEEechhhh----c-cCHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCC---CC Confidence 755322 2566777666541 1 1233455544442 1334466533221 1222222 22 Q ss_pred cccccchhhhcCccCCcccccC-CCcccccCCCCCccCCCccCcCcccCCchhhcCCcc Q lcl|Aclame:pro 467 FGEETTPADFLGERGSPIESPR-GRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGE 524 (533) Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 524 (533) -|+=..|.- ..+.+.+. +..+++..+ .+...- +-.+| T Consensus 382 gD~~~~~~n-----~~~~~~~~~~~~~~~~~~------------~~~~~~----~~~~~ 419 (419) T protein:vir:57 382 GDKYLTPLN-----MVDSKALTGIGKATPQQL------------KDIEAI----LCTRN 419 (419) T ss_pred cCeeeeccc-----cccccccccccCCCcccC------------cchhhh----hhccC Confidence 222111110 00111100 000111111 011100 11111 No 58 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=99.47 E-value=6.3e-13 Score=87.47 Aligned_cols=399 Identities=12% Similarity=0.089 Sum_probs=197.6 Q ss_pred HhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCC Q lcl|Aclame:pro 18 NFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNEN 97 (533) Q Consensus 18 ~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~ 97 (533) =|.+++|+= + ... +..... .++ ..... +||........+ ..+.+...|.|.+||+.|++.+-.+. T Consensus 1 m~~~~~f~~---~-~~~-~~~~~~-~~~----~~~~~-~~~~~~~~~~~v--~~~~al~~~~v~~~i~~Ia~~ia~l~-- 65 (416) T protein:vir:12 1 MLLERMFEK---R-SGS-SDHEDG-FNN----ILLNM-FGGRKTASGERV--SESNSLVQPDIFACVNVLSDDIAKLP-- 65 (416) T ss_pred Cccchhccc---c-cCc-cccCcc-chh----HHHHh-hcCcccccCcee--chhhhhccHHHHHHHHHHHHhhhhCc-- Confidence 222232221 1 111 111111 111 11111 122111100111 11233467999999999998754222 Q ss_pred CceeeeecccccccH-----HHHHHHHH----HhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEE Q lcl|Aclame:pro 98 GNIVDVVTKDIELAK-----AILSYLDY----VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKR 168 (533) Q Consensus 98 ~~~v~v~l~~~e~s~-----si~~~i~~----ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v 168 (533) +.+-.+.-+-.. .+...|.. .+.-....+.++..+++.|+.|..++.+. .+-+.+|.+|||.+|+++ T Consensus 66 ---~~~~~~~~~~~~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~-~G~~~~L~~l~~~~v~v~ 141 (416) T protein:vir:12 66 ---IHTYKRTDGGIERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGS-HGYPEALFPLRPDYTNAY 141 (416) T ss_pred ---eEEEEecCCccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECC-CCcEEEEEEECCcceEEE Confidence 111100000000 01111211 23445678888999999999999888764 345889999999999999 Q ss_pred eeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccc Q lcl|Aclame:pro 169 YNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDR 248 (533) Q Consensus 169 ~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeR 248 (533) .+..+...||.+.. .+....+++++++|+.+...+ +.+|+|.|+.+.+.+......+....-+=-..+..+ T Consensus 142 ~~~~~~~~~~~~~~-------~g~~~~~~~~eiih~~~~~~~--~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~ 212 (416) T protein:vir:12 142 VHPTTGMLWYQTVL-------NGKAIELYDYEVLHFKGLSTD--GIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPR 212 (416) T ss_pred EeCCCcEEEEEEec-------CCeEEEecCccEEEecCcCCC--CcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc Confidence 99888887776633 233457888999999855444 359999999999999988888885544333334445 Q ss_pred eeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC--CCCCh Q lcl|Aclame:pro 249 RVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG--SKVDL 326 (533) Q Consensus 249 r~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG--~nlg~ 326 (533) -++.++ +.+-+..+++ +++-.++.. +.|.+. +++ .|++++.|.= ..+.- T Consensus 213 ~il~~~-~~~~~e~~~~-~~~~~~~~~-------~~~~~~----------vl~----------~g~~~~~l~~~~~d~q~ 263 (416) T protein:vir:12 213 GILKVP-AFLDEKPKEN-VRKEWKRVN-------KVENIA----------IID----------YGLEYQSISMPLQEAQF 263 (416) T ss_pred eEEecC-CCCCHHHHHH-HHHHHHHHh-------cCCCee----------ecC----------CCceEEEccCChhhHHH Confidence 555544 2343333333 333222221 123221 111 2456665532 12344 Q ss_pred HHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccceeEEecCCc Q lcl|Aclame:pro 327 AEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSN 405 (533) Q Consensus 327 i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn 405 (533) ++-.+|....+.++++||.+.|+...... .+.+.-....|.. -|.-+-..+++.|.+.|+...... ..+.+.|..+. T Consensus 264 ~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t-~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~l~~~~~~~-~g~~i~fd~~~ 341 (416) T protein:vir:12 264 VESMKFNKAQISMIYKVPLHKLNELDKAT-FSNIEHQSIEYVRNTLQPWIVNFEQELNVKLFLDHDQK-SGHYVKFNIDS 341 (416) T ss_pred HHHHHHHHHHHHHHhCCCHHHhCCccCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhc-CCceEEeechh Confidence 56678889999999999999998543322 2223333344544 466677788888877776443221 23456665443 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCccccccc-----chhhhcCcc Q lcl|Aclame:pro 406 SIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEET-----TPADFLGER 480 (533) Q Consensus 406 ~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~-----~~~~~~~~~ 480 (533) . ... -...|.+++..+ -+..-||..|.=. .++-.++ ++-|+-. .|....++. T Consensus 342 l----~~~-d~~~~~~~~~~~----------~~~G~~T~NE~R~-----~~gl~Pi---~ggd~~~~~~n~~~~~~~~~~ 398 (416) T protein:vir:12 342 E----LRG-DSKTQAEYLKTL----------HETGVLNKDEIRE-----LLERNPI---ENGDKYISSLNYVFLDFLEEY 398 (416) T ss_pred h----hcc-CHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCC---CCcceeeeccccccccccchh Confidence 2 111 123344444432 1233455422211 1222222 1122211 121111111 Q ss_pred CCcccccCCCcccccCCCCCccCCC Q lcl|Aclame:pro 481 GSPIESPRGRTEFDFGTEGGEELGG 505 (533) Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (533) .. +..+. .+.-|...+ .| T Consensus 399 ~~---~~~~~-~~~gge~~~---~g 416 (416) T protein:vir:12 399 QR---LKAGG-AMKGGDNKN---EG 416 (416) T ss_pred hc---ccccc-ccCCCCCcC---CC Confidence 11 11111 111111111 12 No 59 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=99.47 E-value=1.3e-12 Score=85.81 Aligned_cols=428 Identities=11% Similarity=0.027 Sum_probs=209.8 Q ss_pred hcccc-cccCcc----------cCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhh Q lcl|Aclame:pro 20 LSPMY-GMGAPH----------GAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIA 88 (533) Q Consensus 20 ~~~~~-s~~~p~----------~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Iv 88 (533) |+=+- ++++|. ..+|++...-...-+ .++. . .-...+...|..+-|.++.++|.+..||+.++ T Consensus 1 m~~~~~~~~a~~~~~~~~~~~~~y~aa~~~~~~~~~~-~~s~-d----~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~ 74 (495) T protein:vir:10 1 MNMTPSGYQSLASGLLVPVGASAYEGASGGHRWQDIG-DYGP-D----TAVASGIQTLRARSHHNVRNNPWATNAVATWV 74 (495) T ss_pred CCcccccccccchhhhhHHHhhhhhccccCcccCCCC-CCCh-h----HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 11000 111111 123333222110000 0000 0 01123567788999999999999999999999 Q ss_pred ceeeecCCCCceeeeecccccccHHHHHHHHH---------HhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCe---ee Q lcl|Aclame:pro 89 DECTIPNENGNIVDVVTKDIELAKAILSYLDY---------VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTI---EK 156 (533) Q Consensus 89 neaiv~d~~~~~v~v~l~~~e~s~si~~~i~~---------ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI---~e 156 (533) +.+|..+.- .+....+.++.+.|-..|.+ +++|..-..-.+|.|++||.+|..+...+...|. +. T Consensus 75 ~~vVG~Gi~---p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g~~~~~~ 151 (495) T protein:vir:10 75 AAAVGNGLT---PRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGLSVPLQ 151 (495) T ss_pred HhhcCCCcc---cccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCCCccceE Confidence 999976432 22223444566666444432 5678777888999999999999887766544432 57 Q ss_pred eEEcCcceeeEEe-----------------eccCcE-EEEEec--ccceec-ccCCcccccCcccEEEEecCcccCcccc Q lcl|Aclame:pro 157 FQVVSPYIFSKRY-----------------NPETDT-WYYVIT--DVYRNV-VSGYFNEDIPEEDVIHFSHKIDTNFFPY 215 (533) Q Consensus 157 lr~ldP~~ik~v~-----------------d~~g~~-e~y~y~--~~~~~~-~~~~~~~~~~~~dvi~~~~~~~~d~~~~ 215 (533) |+.|+|..|.--. |..|.. .|+++. ++.... .......-+++++|+|+-. . ..-... T Consensus 152 lqliepd~l~~~~~~~~~~~g~~i~~GIe~d~~Gr~vaY~i~~~hpgd~~~~~~~~~~~rvpA~~vlH~f~-~-r~gQ~R 229 (495) T protein:vir:10 152 LQIIEPDMLASDIPDETLPSGGYVKGGIRFSNGGKRKAYCFYRNHPAESSLIGDPVDTVWIKAEHVLHVTV-L-TVRSDA 229 (495) T ss_pred EEEechhhcCCCCCCCCCCCCCEEEeceEECCCCceEEEEEeecCCCcccccccccceeeechhheEeccc-c-CCCccc Confidence 9999999884211 122222 344443 332221 1222334578899999843 2 222358 Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccch Q lcl|Aclame:pro 216 GRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFS 295 (533) Q Consensus 216 g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n 295 (533) |+|+|+.+++ +++|...+||.+.-...-| --+.+|...+ |..-+.+....-........+.+-.-|.|.. T Consensus 230 Gis~la~i~~-l~~l~~y~dael~~a~i~A--~~~~fi~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~------ 299 (495) T protein:vir:10 230 GAPWFQLLLR-LNELDQYEDAELVRKKTAA--LFAAFIQEAT-ADSTGGPTIGQPKRSKGGKRITGLNPGTLQY------ 299 (495) T ss_pred CcchhHHHHH-HHHhhHHHHHHHHHHHHhh--hheeeeecCC-CccccccccCccccccCcccceecCCceeee------ Confidence 9999997665 8999999999888887766 2344443321 1111110000000000001111112222210 Q ss_pred hhhHHhhhhcccccCCCcceeeecCCC-CCChHHH-HHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 296 IESILKDYFIPRRGDRRAVEIDILQGS-KVDLAED-VEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKR 373 (533) Q Consensus 296 ~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~D-v~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~r 373 (533) | .-|.+|+.+.-. .-+..++ ++...+.+-.+||||-.-|..+-+-.+=+++.-..+.|-+.+.+ T Consensus 300 ---------L-----~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~Ye~ltgD~s~~nYSS~R~~~~e~~r~~~~ 365 (495) T protein:vir:10 300 ---------L-----QPGQEVKFSNPADVGTTYEPWLRYQLLSIAKGYGITYEMLTGDLRGVNYSSIRAGLLEFRRLCQQ 365 (495) T ss_pred ---------c-----CCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHH Confidence 1 235666666422 2233333 77888889999999999888643333334555567779999999 Q ss_pred HHHH-HHH--------HHhhhhhhccCCCccce--------eEEe--cCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHH Q lcl|Aclame:pro 374 IQGF-FVE--------ELERMVRMNKEFADQDF--------RLVM--NRSNSIVEGERFAVIEQRIGIAERLKGWVREDW 434 (533) Q Consensus 374 Lr~~-F~~--------~l~~qLilk~i~t~eew--------~~~f--~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~ 434 (533) +|.+ |.. .+....++.|.+...+| ...| -.-.+.--+||+.-...+++. ..-+..= T Consensus 366 ~q~~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~-----G~~s~~~ 440 (495) T protein:vir:10 366 VQHHMIIHQFCRPVGRWFMDFAVASGAVVIPDYLQRRRYYNRVSWRTPRWEEVDPLKKHLADLGDVRA-----GFAPISD 440 (495) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchhhhHhhhccccccCCccccChHHHHHHHHHHHHc-----CCCCHHH Confidence 9875 332 23344578887764322 2223 333344556666655544431 1111111 Q ss_pred HHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccC--CcccccCCCcccccCCCCCccCCCccCcCcc Q lcl|Aclame:pro 435 IYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERG--SPIESPRGRTEFDFGTEGGEELGGELNLGGA 512 (533) Q Consensus 435 i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (533) +......=-++..+|.+. |. ...+..|+.. +|...+ ..|.........+ .++. T Consensus 441 ~~a~~G~D~~~v~~q~a~---e~--------------~~~~~~Gl~~~~~p~~~~------~~~~~~~~~~~~~--~~~e 495 (495) T protein:vir:10 441 KQAERGYDMEELFDMISD---AN--------------QLIDEYDLRLDSDPRYVN------GSGAEQKSVMEAA--LNNE 495 (495) T ss_pred HHHHcCCCHHHHHHHHHH---HH--------------HHHHHcCCCCCCCCCcCC------CccCCCCCCCCCC--CCCC Confidence 111111100122222211 11 1112233321 221110 0011000000000 0000 No 60 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=99.46 E-value=5.3e-12 Score=82.39 Aligned_cols=392 Identities=14% Similarity=0.119 Sum_probs=197.3 Q ss_pred hcccccccCccc-----CCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeec Q lcl|Aclame:pro 20 LSPMYGMGAPHG-----AGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIP 94 (533) Q Consensus 20 ~~~~~s~~~p~~-----~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~ 94 (533) |++--.++..|. --+.+.... .+.... .+..|.+...+ .+.+.|.|.+||+.|++.+-.+ T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~v~~~----------~a~~~~~v~~~i~~Ia~~ia~l 65 (409) T protein:vir:94 1 MAKENIVTRIKKKLIDNWIDQSASKL--YDFSPW---KNKSFWGVINN----------TLETNETIFSAITKLSNSMASL 65 (409) T ss_pred CcccccchhhhhHHhhhhhcCCcccc--cccccc---cCccccccchh----------hhhccHHHHHHHHHHHHhhhhC Confidence 222222221111 000011110 111111 11112222211 2446799999999999775422 Q ss_pred CCCCceeeeecccccccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceee Q lcl|Aclame:pro 95 NENGNIVDVVTKDIELAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFS 166 (533) Q Consensus 95 d~~~~~v~v~l~~~e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik 166 (533) . +.+- ++.+..+. .+..+| .-....+.++..++++|+.|..++.+. .+-+.+|.+|+|.+|+ T Consensus 66 p-----~~~~-~~~~~~~~---~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-~G~~~~L~~l~~~~v~ 135 (409) T protein:vir:94 66 P-----LKMY-EDYKVVNT---EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI-YHQPSKLFLLNPDVVE 135 (409) T ss_pred c-----eeEe-ecccccch---hHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECC-CCcEEEEEEEcCceeE Confidence 2 2221 11122221 233333 334567888999999999998877653 3447899999999999 Q ss_pred EEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 167 KRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSV 246 (533) Q Consensus 167 ~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAP 246 (533) +..+..+...+|.+... .+....+++++|+|+.+....+ +-+|+|-|..|.+.......++.. -+....+.| T Consensus 136 v~~~~~~~~~~y~~~~~------~g~~~~~~~~dvih~r~~~~~~-~~~G~s~l~~~~~~i~~~~~~~~~-~~~~~~~~~ 207 (409) T protein:vir:94 136 MLIENQSRELYYSIHAA------TGNKLIVHNMDMLHFKHIVASN-MVQGISPIDVLKNTTDFDNAVRTF-NLTEMQKPD 207 (409) T ss_pred EEEeCCCcEEEEEEEcC------CceEEEEccccEEEecCCCCCC-ccccccHHHHHHHHHHHHHHHHHH-HHHhcCCCC Confidence 99998887777766432 2334567889999997432222 348999888887777766666554 233333333 Q ss_pred cceeeecCCC-CCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC--C Q lcl|Aclame:pro 247 DRRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--K 323 (533) Q Consensus 247 eRr~fyidvG-nlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--n 323 (533) .+.+..+ ++-+.+.+...+.+.+.| .+ .|.+. .+ ..|++++.|.-. . T Consensus 208 ---~~i~~~~~~l~~e~~~~~~~~~~~~~------~~-~g~~~----------vl----------~~g~~~~~l~~~~~d 257 (409) T protein:vir:94 208 ---SFMLKYGSNVGKEKRQQVLEDFKQYY------EE-NGGIL----------FQ----------EPGVEIEPLPKKYVS 257 (409) T ss_pred ---eeEEecCCCCCHHHHHHHHHHHHHHh------hc-CCCee----------ec----------CCCceEEEcCCChhH Confidence 2344444 555555544444444333 22 33321 11 135677766422 2 Q ss_pred CChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCccceeEEec Q lcl|Aclame:pro 324 VDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFRLVMN 402 (533) Q Consensus 324 lg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~eew~~~f~ 402 (533) +.-++-.+|-.+.+.++++||...|+..++. ..+.+....+.|.++ |.-+.+.+.+.|.+.|+....... ...|.|. T Consensus 258 ~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~-~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~Ll~~~~~~~-~~~i~fd 335 (409) T protein:vir:94 258 EDIVASENLTRERVANVFQLPSVFLNARSNT-NFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREK-NRYFKFN 335 (409) T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHhCCCCCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccC-cceEEee Confidence 3334446677889999999999999854332 223444445557665 666777788888887775432221 2335554 Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCC Q lcl|Aclame:pro 403 RSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGS 482 (533) Q Consensus 403 ~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (533) .+ ++.... +..|++++..+- +..-||..|.-. .++-.++ ++-|+=.. ..... T Consensus 336 ~~----~ll~~d-~~~~~~~~~~~~----------~~G~~T~NE~R~-----~~g~~p~---~ggD~~~~-----~~n~~ 387 (409) T protein:vir:94 336 VK----SYLRAD-SATQAEVYFKAV----------RSGYYTINDIRE-----WEDLPPV---EGGDKPLI-----SGDLY 387 (409) T ss_pred ch----hhhccC-HHHHHHHHHHHH----------hCCCcCHHHHHH-----HhCCCCC---CCcCeEee-----ccccc Confidence 33 233222 345555554431 234466533211 1222222 22221111 11112 Q ss_pred cccccCCCcccccCCCCCccCCCccCcCcccCCchhhcC Q lcl|Aclame:pro 483 PIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETG 521 (533) Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 521 (533) |++.+... +.. ..||+-|- ++ | T Consensus 388 ~~~~~~~~---~~~-----~kGG~~n~----~e-----~ 409 (409) T protein:vir:94 388 PIDTPLEL---RKS-----LKGGDKNV----NE-----S 409 (409) T ss_pred ccccchhh---ccc-----ccCCCCCc----CC-----C Confidence 33332111 111 12222110 00 0 No 61 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=99.46 E-value=4.2e-13 Score=88.43 Aligned_cols=398 Identities=12% Similarity=0.057 Sum_probs=190.7 Q ss_pred hcccccccCcccCCCCccc---------CCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhce Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMI---------PINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADE 90 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i---------~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivne 90 (533) |++=.+++..++.+-.... -.+.......+ ..+.+| ....+-.+|...||+ +.-+..+|+.+++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~rd~l~~~~~glg~~r~~~-~~~~g~-~~~~~~~~l~~~Yr~----~~ia~~iVd~~~d~ 74 (449) T protein:vir:10 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSA-WCEYGF-PELVTYENLYSLYRR----GGIAHGAVEKLVGK 74 (449) T ss_pred CchhhHHHHhhhcchhHHHHHHHHHHHHHhcCCcccchh-hhhcCC-cccCCHHHHHHHHhc----CchhHHHHHhhhhh Confidence 3333334333322211110 01111111111 112222 334566788888883 46788999999988 Q ss_pred eeecCCCCcee-eeecccccccHHHHHHHHHHh--hhHHHHHHHHHHHhhcCceeEEEee-cC--------CCCCeeeeE Q lcl|Aclame:pro 91 CTIPNENGNIV-DVVTKDIELAKAILSYLDYVI--NIEKNAYPIIRNMIKYGDMFLHILE-KG--------SDGTIEKFQ 158 (533) Q Consensus 91 aiv~d~~~~~v-~v~l~~~e~s~si~~~i~~ll--~f~~~~~e~~R~wyvDGr~~~~kii-d~--------~k~gI~elr 158 (533) |.... ..++ ..+.++.+...++...+.+++ .+-.++.+..|.-.++|-..+...+ |. ++.+|..|. T Consensus 75 ~~~~~--~~i~~g~~~~~~~~~~~~e~~~~~l~~~~~~~~l~ea~~~~rl~Gga~i~i~v~d~~~l~~Pl~~~~~i~~i~ 152 (449) T protein:vir:10 75 CWQTN--PEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVS 152 (449) T ss_pred hhhcC--cccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcEEEEEEecCCCCCCcccccCcceeeEE Confidence 74211 1111 111222222233333444443 3345677777755556654443333 31 234777777 Q ss_pred EcCcceeeEE---eec----cCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHH Q lcl|Aclame:pro 159 VVSPYIFSKR---YNP----ETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLR 231 (533) Q Consensus 159 ~ldP~~ik~v---~d~----~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLr 231 (533) .++...|.+. .|+ +|.-++|.++.. -.+++..+.++-+.++++|.... .-|.|+|++ +||.|. T Consensus 153 v~~~~~i~~~~~~~dp~sp~yg~P~~y~v~~~--~~g~~~~~~~iH~SRl~~~~~~~-----~~g~~~L~~---~yn~l~ 222 (449) T protein:vir:10 153 VSWAGSLKVAEWDTGINSKTYGQPKLWKYTER--LPNGSSRRVDIHPDRVFILGDYS-----EDAIGFLEP---AYNAFV 222 (449) T ss_pred eeccccCChhhhhcCCCCCCCCCceEEEEeee--ccCCCccceeeccceeEeecCCC-----CCChhHHHH---HHHHhh Confidence 7776544332 222 133355554422 11122223345566666664221 237899999 577776 Q ss_pred HHHHHH-----HHH-HHhccccceee---ecCCCCCchhhHHH------HHHHHH---HHhhhceeeccCCCeeeccccc Q lcl|Aclame:pro 232 LMEDAL-----MLY-RVVRSVDRRVF---YVDVGNVPPDKINE------YLTNIA---MQYKRDYWVRNNQNQFLGIDNY 293 (533) Q Consensus 232 m~Edal-----VIy-Ri~RAPeRr~f---yidvGnlp~~kAeq------y~~~im---~~~knk~vyd~~tGei~d~~~~ 293 (533) -+|.+. .++ ...|.- .+. .+++.+|....+.. -+.+.+ ++-.+.+..| T Consensus 223 ~~~~~~~~~a~~~l~~~~rq~--~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~------------ 288 (449) T protein:vir:10 223 SLEKVEGGSGESFLKNAARQL--NVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTT------------ 288 (449) T ss_pred hHHHhhhhHHHHHHHHHHHHH--hhhhhhhhhhhhhhHHhhCCchHHHHHHHHHHHHHhccchheeec------------ Confidence 666532 122 122110 011 23454554333211 111111 2211111111 Q ss_pred chhhhHHhhhhcccccCCCcceeeecCCCCCChHHH-HHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHH Q lcl|Aclame:pro 294 FSIESILKDYFIPRRGDRRAVEIDILQGSKVDLAED-VEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIK 372 (533) Q Consensus 294 ~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i~D-v~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~ 372 (533) .+-+.+++.- +++-++| +..|.+.+-.+.+||+++|=..+..|.+++ -|...|+..|. T Consensus 289 ------------------~~~d~~~~~~-~~sgl~d~l~~~~q~iaaa~~IP~t~L~Gqsp~glnst--~D~~nyyd~i~ 347 (449) T protein:vir:10 289 ------------------QGATVTPLVT-SVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSST--EDQKYFNARCQ 347 (449) T ss_pred ------------------CCcceEEEec-ccCChhHHHHHHHHHHHHHhCCCeeeeeccCccccccc--hhHHHHHHHHH Confidence 1112222211 3333433 888999999999999999987776666543 46666999999 Q ss_pred HHHHHHHHHHh---hhhhhccCCCc-cceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhH Q lcl|Aclame:pro 373 RIQGFFVEELE---RMVRMNKEFAD-QDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKP 448 (533) Q Consensus 373 rLr~~F~~~l~---~qLilk~i~t~-eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~ 448 (533) +.|..+...|+ ..|+..++..+ ++|.|.|.+=..=+|...+||.....+++..+-..++.. =++.+++- T Consensus 348 ~~Q~~l~p~le~l~~~l~~s~~g~~~~d~~i~f~pL~~~t~kEkAei~k~~A~a~~~~~~ag~~~-------~~~~~EiR 420 (449) T protein:vir:10 348 SRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNP-------AFSREEIR 420 (449) T ss_pred HHHHhhhHHHHHHHHHHHHhhcCCCCCceeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHccccC-------CcCHHHHH Confidence 99887665443 34566666664 589999999888889999999999998887754432110 11222221 Q ss_pred HHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCccc Q lcl|Aclame:pro 449 QEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAF 513 (533) Q Consensus 449 q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (533) +...-+.-...+... +. +++..++ ..+|+ T Consensus 421 ~~~~~~~~~~~~~~~----------------------------e~-----~de~~~~---~d~~a 449 (449) T protein:vir:10 421 TAAGYDNDDEEPLGE----------------------------ED-----GDEEDKA---TDSAA 449 (449) T ss_pred HHhcccCCCCCCCCC----------------------------CC-----Ccccccc---CCcCC Confidence 111000000000000 00 1111111 11122 No 62 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=99.46 E-value=9.2e-12 Score=81.10 Aligned_cols=443 Identities=10% Similarity=0.011 Sum_probs=200.3 Q ss_pred hhccccccc---CcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecC Q lcl|Aclame:pro 19 FLSPMYGMG---APHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPN 95 (533) Q Consensus 19 ~~~~~~s~~---~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d 95 (533) +-+..||+. .|+.-.. ..++. .+.+... ...+|..- -| ...+.+++...|.|.+||+.|++.+-... T Consensus 1 ~~~~~~~i~s~~~~~~i~~-~~~~s---~~~~~~~-~~~~~~pp-~~----~~~la~l~~~n~~v~scI~~ia~~IA~l~ 70 (542) T protein:vir:41 1 MFNYHLSIRSLEKYKAIKR-EEVES---QALGETR-FEEYVEPK-VN----PLVLLSLLQVNPYHASACSIKANDIIRTG 70 (542) T ss_pred Cccccccccccccchhhhh-ccccc---ccccccc-CCccccCC-CC----HHHHHHHHhhcHHHHHHHHHHHHHHhhCc Confidence 444444443 2222111 11110 1111100 01222211 13 33455676678999999999998755332 Q ss_pred CCCceeeeecccccccHHHHHHHH--HHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeeccC Q lcl|Aclame:pro 96 ENGNIVDVVTKDIELAKAILSYLD--YVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPET 173 (533) Q Consensus 96 ~~~~~v~v~l~~~e~s~si~~~i~--~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g 173 (533) . .+.-++.+ ....++ ..+......+.+++.+++.|+.|++++.|. ++-+.+|++|||.+|++..+..+ T Consensus 71 ~-----~~~~~~~~----~l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~-~G~~~~L~~l~~~~v~v~~d~~~ 140 (542) T protein:vir:41 71 Y-----ILEGDDEG----VVDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDD-RGDPIRFEYIPSHTIRVHKDGSR 140 (542) T ss_pred e-----eeecccch----hhhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC-CCcEEEEEEEcCcceEEEEcCCe Confidence 2 22211111 111111 123455667788999999999999988765 46699999999999998877554 Q ss_pred cE---------EEEEecccceec-ccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 174 DT---------WYYVITDVYRNV-VSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVV 243 (533) Q Consensus 174 ~~---------e~y~y~~~~~~~-~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~ 243 (533) -+ ++-.|......+ ..+.....+++.+|||+......+ +.||+|-+..|+..+.....+++...-+=.- T Consensus 141 ~~~~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~eIiHir~~~~~~-~~~Glspi~~~~~~i~~~~~~~~~~~~~f~N 219 (542) T protein:vir:41 141 YRQTWDGVNITHFKDYRYEGEINPETGEDQDSVGANELVFIHIPSPVC-SYYGVPRYVSAAPAILAMQKIDEYNYAFFDN 219 (542) T ss_pred eEeeecCCcceeEEeecccccccccccccccccCcccEEEecCCCCCC-CcccccHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 22 111222211111 233344567889999997544322 3599999999999888887777744333222 Q ss_pred ccccceeeecCCCCC-----chhhHHHHHHHHHHHhhhceee-ccCCCeeecccccchhhhHHhhhhccccc-CCCccee Q lcl|Aclame:pro 244 RSVDRRVFYVDVGNV-----PPDKINEYLTNIAMQYKRDYWV-RNNQNQFLGIDNYFSIESILKDYFIPRRG-DRRAVEI 316 (533) Q Consensus 244 RAPeRr~fyidvGnl-----p~~kAeqy~~~im~~~knk~vy-d~~tGei~d~~~~~n~~smleDywlprR~-g~~gtEi 316 (533) .+-.+-++++..+-. ......+..+.+...++.+.-- ..+.|.+. ++ +.-. ...|.++ T Consensus 220 g~~p~gIL~~~~~l~de~~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~----------vL-----~~~~~~~~g~~~ 284 (542) T protein:vir:41 220 YTIPSYVITVTGEFEDELEEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPL----------VF-----SIPGGDTVKVTF 284 (542) T ss_pred cCCccEEEEeCCccccccccccccCHHHHHHHHHHHHHHHhhhhcccCcee----------Ee-----eccCCcccceeE Confidence 233445555543210 1111222333333333222110 01122221 11 1111 1235566 Q ss_pred eecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCc-cchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCC Q lcl|Aclame:pro 317 DILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDV-NAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEF 392 (533) Q Consensus 317 ~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~-gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~ 392 (533) +-|.-. .+.-++-.++..+.+.+++|||...|+...+. ..++.+......|.+ -|.-++++|.+.|.+.|.... T Consensus 285 ~pl~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~n~sn~Eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~-- 362 (542) T protein:vir:41 285 TPLNTSQKELSFREYAAEKKYDIAAAHMIDPYRLGIADTGPLGGNFAEVTRRTYYESVVRPQQNIISSILTDFFQVKF-- 362 (542) T ss_pred EEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-- Confidence 555211 12223335677888999999999999865432 233344444455644 567788888888887665332 Q ss_pred CccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccc Q lcl|Aclame:pro 393 ADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETT 472 (533) Q Consensus 393 t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~ 472 (533) ...+.|.|..+.....- ...+++.+ -+..-||.++.- +.+ .++.+ ..+.-+. T Consensus 363 -~~~~~~~f~~~~ll~~d-----~~~~~~~~-------------v~~GilT~NE~R--e~L-----~g~~p--gdd~~l~ 414 (542) T protein:vir:41 363 -NPKTRFKFNDETLLESD-----SVRNCALL-------------VQSGVLTPAEAR--ERL-----FGLDG--GPDIFMV 414 (542) T ss_pred -CCceEEEecchhhcchH-----HHHHHHHH-------------HhCCCCCHHHHH--Hhh-----CCCCC--CCccccc Confidence 12456777655443221 11111111 122445643321 111 01111 1111111 Q ss_pred hhhhcCccCCcccccCCCc-ccccCCCCCccCCCc-cCc-CcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 473 PADFLGERGSPIESPRGRT-EFDFGTEGGEELGGE-LNL-GGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 473 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) |...........+.+..+. ..+..--.. .++. .|- ......-++.+|+. ..||-| T Consensus 415 p~~~~~~~~~~~~~n~~~~~~~~~~k~~~--k~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 472 (542) T protein:vir:41 415 PSKGAAKSVKRQERNYEKNQIREIRKIYA--KYRPRFNEIISSKLSAEEKKKKI----DESLAE 472 (542) T ss_pred cccccccccccCCcCCCCCchhhhhhccc--ccCccccccccccccchhhcccc----cchhhh Confidence 1111000000000000000 000000000 0000 111 01111222333333 334333 No 63 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=99.46 E-value=5.2e-12 Score=82.43 Aligned_cols=434 Identities=13% Similarity=0.085 Sum_probs=195.4 Q ss_pred cchhhhhhhHHHHHHhhccccccc-CcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMG-APHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLIST 82 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~-~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~ 82 (533) |-+| +.+|+.. .|..+.+.... .+...+.... ..+...+|..-|. +.+.++|.|.+ T Consensus 1 Mg~~-------------~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~g~~v~~--------~~al~~~~v~~ 57 (457) T protein:vir:62 1 MGFW-------------SALFGRGHSPALDAAEGRA-WEPYDPSIYN-LGATASSGERVTP--------HDALQVSAVFA 57 (457) T ss_pred Cchh-------------hhhhccccccccccccccc-cccchhhhhh-ccccccCCceech--------HHhhccHHHHH Confidence 2222 2334432 22222211111 0001111100 0011111221121 13346799999 Q ss_pred HHHHhhceeeecCCCCceeeeecccccccHHHHH-HHHHH-------hhhHHHHHHHHHHHhhcCceeEEEeecCCCCCe Q lcl|Aclame:pro 83 VLDIIADECTIPNENGNIVDVVTKDIELAKAILS-YLDYV-------INIEKNAYPIIRNMIKYGDMFLHILEKGSDGTI 154 (533) Q Consensus 83 AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~-~i~~l-------l~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI 154 (533) ||+.|++.+=- .|+.|--.+-.-...+.. .+..+ +......+.++..+++.|+.|..+ .+. .+++ T Consensus 58 ~i~~ia~~iA~-----lp~~~~~~~~~~~~~~~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i-~~~-~g~~ 130 (457) T protein:vir:62 58 SVRLLSETIAT-----LPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAV-RWA-GPNI 130 (457) T ss_pred HHHHHHHhHhh-----CceEEEEecCCccccccchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEE-EeC-CCcE Confidence 99999976321 122221111000011111 12222 345567788889999999998765 433 4779 Q ss_pred eeeEEcCcceeeEEeeccCc---EEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHH Q lcl|Aclame:pro 155 EKFQVVSPYIFSKRYNPETD---TWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLR 231 (533) Q Consensus 155 ~elr~ldP~~ik~v~d~~g~---~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLr 231 (533) .+|.+|+|.+|.+.++..+. ..+|.|... ..+.......+++++|||+......+. -+|+|-++.|++.+.... T Consensus 131 ~~l~~l~p~~v~v~~~~~~~~~~~~~~~y~~~--~~g~~~~~~~~~~~eiih~r~~~~~~~-~~G~sp~~~~~~~i~~~~ 207 (457) T protein:vir:62 131 AGLDVLDPTKIHVHMVMVDGLRRKVFEAYDID--ADGNEVLLGWFTPRDVLHIPGMMLPGD-FVGCSPISYARESIGLAL 207 (457) T ss_pred EEEEEEcCcceEEEEeccCCccceeEEEEEEc--cCCceeEEEeeCccceEEecCCCCCCc-eecccHHHHHHHHHHHHH Confidence 99999999999988866544 234444321 111122234567899999986555442 489999999999999888 Q ss_pred HHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCC Q lcl|Aclame:pro 232 LMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDR 311 (533) Q Consensus 232 m~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~ 311 (533) .+++...-+=---+-.+-++.++ |.|-+..+++..+.+...|+. ..+.|.+ + .|+ T Consensus 208 ~~~~~~~~~f~ng~~p~gil~~~-~~ls~e~~~~~~~~~~~~~~G----~~nag~~---------~-vl~---------- 262 (457) T protein:vir:62 208 AAQKYGAHFFRNGAMPGAVVEVP-GTMSEEGLARAREAWRAANSG----VDNAHRV---------A-LLT---------- 262 (457) T ss_pred HHHHHHHHHHhccCCcceEEEcC-CCCCHHHHHHHHHHHHHHhcC----ccccCcc---------e-ecC---------- Confidence 88875443322222223334443 455554444444444333321 0112222 1 111 Q ss_pred CcceeeecCCCCCC---hHHHHHHHHHHHHHhcCCCeeeccCCCCcc-chhhhhHHHHHHHHH-HHHHHHHHHHHHhhhh Q lcl|Aclame:pro 312 RAVEIDILQGSKVD---LAEDVEYMLNRLISALKVPKAFIGYEGDVN-AKNTLATQDIKFNNT-IKRIQGFFVEELERMV 386 (533) Q Consensus 312 ~gtEi~TLpG~nlg---~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~g-r~~eI~rde~kF~kf-I~rLr~~F~~~l~~qL 386 (533) .|.+++.|. -+.. -++=.+|....+.++++||...|+...+.. -++.+....+.|.++ |.-+..+|++.|.+.| T Consensus 263 ~g~~~~~l~-~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~~~f~~~~l~P~~~~ie~~ln~~L 341 (457) T protein:vir:62 263 EGAKFSKVA-MSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLL 341 (457) T ss_pred CCceEEEcc-CChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh Confidence 244555442 1222 233355788899999999999997544322 223455555667775 6667778888888888 Q ss_pred hhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcc Q lcl|Aclame:pro 387 RMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGG 466 (533) Q Consensus 387 ilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~ 466 (533) +.+.. ..-+.+.|..+.. .. .-++.|.+++..+ -+..-||..++-.. ++-.++. .+. T Consensus 342 ~~~~~--~~~~~i~fd~~~l----~~-~d~~~r~~~~~~~----------~~~G~~T~NE~R~~-----~gl~pi~-~g~ 398 (457) T protein:vir:62 342 FAETA--DRFRFVKFNLDEI----KR-GAPKERMELWSLG----------LQNGIYSIDEVRAA-----EDMTPLP-DGL 398 (457) T ss_pred cCccc--cCceEEEeechhh----hc-cCHHHHHHHHHHH----------HhCCCcCHHHHHHH-----hCCCCCC-CCC Confidence 75432 2223455554432 11 1234455555442 13344565332211 1111111 111 Q ss_pred cccccchhhhcCccCCccc---ccCCC---cccccCCCCCccCCCccCcCcccCCchhhcCCcccC Q lcl|Aclame:pro 467 FGEETTPADFLGERGSPIE---SPRGR---TEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEE 526 (533) Q Consensus 467 ~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (533) .|+-..|. +....+...+ .|.++ ...+..-.+.+..+ -.+.+.+.+-++ +.++ T Consensus 399 ~D~~~~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~--~~~~ 457 (457) T protein:vir:62 399 GEKYRVPL-NLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDN----AEGDPDEGETED--DDDA 457 (457) T ss_pred cceeeecc-ccccccccccccccCCCccCCCCccCCCCCCCCCC----CCCCCccccccc--cccC Confidence 12211111 0000000000 00000 00000000000000 011111111111 1111 No 64 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=99.46 E-value=7.2e-12 Score=81.68 Aligned_cols=396 Identities=12% Similarity=0.074 Sum_probs=187.1 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) |--|.+| |..+......+... ....+ +. ..+++|..-+ +.. +.+.|.| T Consensus 1 Mgl~~~~------------------f~~~~~~~~~~~~~-~~~~~-~~----~~~~~g~~v~-------~~~-al~~~~v 48 (409) T protein:vir:84 1 MSLFTRI------------------FSGPSEERTLTKIS-GIPSP-AE----DWAMHGDRPG-------ANS-AMTLGAF 48 (409) T ss_pred Cchhhhh------------------hcCCCccccccccc-ccccc-cc----hhhccCcccc-------hhh-hhccHHH Confidence 2222211 22222111111110 00011 11 1111222111 222 2357899 Q ss_pred HHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCC Q lcl|Aclame:pro 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDG 152 (533) Q Consensus 81 ~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~ 152 (533) .+||+.|++.+=... +.+--++ +-.......+.++| .-....+.++..+++.|+.|..+...+..+ T Consensus 49 ~~~v~~ia~~iA~lp-----~~~~~~~-~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g 122 (409) T protein:vir:84 49 YACVTLLADTVASLS-----IDAYRKK-DNVRIPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEAN 122 (409) T ss_pred HHHHHHHHHhhhhCc-----eEEEEec-CCcccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCC Confidence 999999998853221 1111100 00011112234444 235677888999999999998776555556 Q ss_pred CeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 153 TIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRL 232 (533) Q Consensus 153 gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm 232 (533) -+.+|.+|+|.+|++.....+...+|.+... ..+..+++++|||+......+. .+|+|-+..|.+.+..... T Consensus 123 ~~~~L~~l~p~~v~v~~~~~~~~~~~~~~~~-------~~g~~~~~~dvih~~~~~~~~~-~~G~s~i~~~~~~i~~~~~ 194 (409) T protein:vir:84 123 RPTAIMPIHPDCIHVTDAKDEDGDWIEPVYR-------IDGKVVPNHRIMHIKRYPVAGC-ALGMSPIEKAASAIGLGLA 194 (409) T ss_pred ceEEEEEEcCceeEEEEcCCCcceEEEEEec-------CCceEEchhhEEEecCCCCCcc-cccccHHHHHHHHHHHHHH Confidence 6899999999999877544433222222111 1123477899999986655543 4899999999988888887 Q ss_pred HHHHHHHHHHhccccceeeecCC-CCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCC Q lcl|Aclame:pro 233 MEDALMLYRVVRSVDRRVFYVDV-GNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDR 311 (533) Q Consensus 233 ~EdalVIyRi~RAPeRr~fyidv-Gnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~ 311 (533) +++...-+ .+.--+.-..|.+ |++-+.++++..+.+...+. +.|.+. .+ . T Consensus 195 ~~~~~~~~--f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~-------n~g~~~----------vl----------~ 245 (409) T protein:vir:84 195 AERYGLRW--FRDSANPSGILSSDADLTPDQVKQTQKQWIQSHH-------NRRLPA----------VM----------S 245 (409) T ss_pred HHHHHHHH--HhcCCCccEEEecCCCCCHHHHHHHHHHHHHHhc-------cCCCee----------ec----------C Confidence 77744432 2222233334444 46666666666555544432 233321 11 1 Q ss_pred CcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCcc-chhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 312 RAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVN-AKNTLATQDIKFNNT-IKRIQGFFVEELERMVR 387 (533) Q Consensus 312 ~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~g-r~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLi 387 (533) .|++++.|.=. .+.-++-.++..+.+++++|||...|+...+.+ -++.+....+.|..+ |.-+-+.+.+.|.+.| T Consensus 246 ~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~L- 324 (409) T protein:vir:84 246 AGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMIGDVEKSTSWGTGIEEQGINFVRHTLLPWLRCIEQALDTFL- 324 (409) T ss_pred CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc- Confidence 24455555211 233345567888999999999999997543321 223344444556554 4445555666666655 Q ss_pred hccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCccc Q lcl|Aclame:pro 388 MNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGF 467 (533) Q Consensus 388 lk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~ 467 (533) .. .+.+.|..+ .+.... ++.|++++..+- +..-||..|.= +.++..++ ++- T Consensus 325 ~~------g~~i~fd~~----~l~~~d-~~~~~~~~~~~~----------~~G~~t~NE~R-----~~~g~~p~---~gg 375 (409) T protein:vir:84 325 PR------GQFVKFNVD----GLMRGD-VTARFTAYQMGL----------QNGIWSVNEVR-----AWEDAPPI---PEG 375 (409) T ss_pred cC------CCeEEEech----hhhccC-HHHHHHHHHHHH----------hCCCcCHHHHH-----HHhCCCCC---CCc Confidence 12 233444332 232222 234454444321 33456643321 11222222 222 Q ss_pred ccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCccc Q lcl|Aclame:pro 468 GEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEE 525 (533) Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 525 (533) |+-..|. + ..|+... ++.. .+.++.+...-.||+ T Consensus 376 D~~~~~~-n----~~~~~~~-----------~~~~--------~~~~~~~~~~~~gn~ 409 (409) T protein:vir:84 376 DIHLQPM-N----FVPLGYV-----------PPEE--------PAQEPQPNSATEGNK 409 (409) T ss_pred ceeeecc-c----ccccccC-----------Cccc--------cCcCCCCCCccCCCC Confidence 2111111 0 0111100 0000 000011111111222 No 65 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=99.44 E-value=5.3e-12 Score=82.41 Aligned_cols=402 Identities=12% Similarity=0.070 Sum_probs=194.6 Q ss_pred cccccCcccCCCCcccCCCCCccccchhhccccc-----CccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCC Q lcl|Aclame:pro 23 MYGMGAPHGAGGSSMIPINMYHPFATAGYASRFY-----GGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNEN 97 (533) Q Consensus 23 ~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~y-----gg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~ 97 (533) || ++ +........+ +.+..+....++.. .|..-|. +.+.+.|.|.+||+.|++.+=. T Consensus 1 m~-~~-~~~~~~~~~~----s~~~~w~~~~~~~~~~~~~~g~~vt~--------~~al~~~~v~~~i~~Ia~~iA~---- 62 (421) T protein:vir:10 1 MF-IP-QMFEGKKRSV----SGGGFWEAMLGGVRSSHSKAGVMITP--------ETALALSAVRACVTLLAESVAQ---- 62 (421) T ss_pred CC-Cc-chhccccccc----CcchhhHHHhhhhccCcccCCceech--------HHhhccHHHHHHHHHHHHhhcc---- Confidence 22 21 1111111111 11112111111111 1221122 1344679999999999987332 Q ss_pred Cceeeeeccccccc-HHHH-HHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeE Q lcl|Aclame:pro 98 GNIVDVVTKDIELA-KAIL-SYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSK 167 (533) Q Consensus 98 ~~~v~v~l~~~e~s-~si~-~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~ 167 (533) .|+.|--.+.+-. ..+. ..+..+| .-....+.++..++++|+.|..++.+. .+-+.+|.+|+|.+|++ T Consensus 63 -lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~-~G~~~~L~~l~~~~v~v 140 (421) T protein:vir:10 63 -LPVELYRRDKNGGRQRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDG-KGYPKELIPINPKKVIV 140 (421) T ss_pred -CceEEEEEcCCCceeecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC-CCcEEEEEEecCceEEE Confidence 1222211100000 0000 1233333 234566778889999999999887764 35688999999999999 Q ss_pred EeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHH-HHHHhccc Q lcl|Aclame:pro 168 RYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALM-LYRVVRSV 246 (533) Q Consensus 168 v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalV-IyRi~RAP 246 (533) ..+..+...|+++.. +..+++++++|+.+...++ -+|+|.|+.|.+.+.....+++... .|+ --+- T Consensus 141 ~~~~~g~~~y~~~~~----------g~~~~~~eiih~~~~~~d~--~~G~spi~~~~~~i~~~~~~~~~~~~~f~-ng~~ 207 (421) T protein:vir:10 141 LKGPDGMPYYEIPEI----------GETLPMRMMHHVKVFSLDG--YIGSSPIQTNADVLGLNLAVEEHASAVFR-RGAT 207 (421) T ss_pred EECCCceEEEEEcCC----------CcEEchhhEEEecCcCCCC--cccccHHHHHHHHHHHHHHHHHHHHHHHh-cCCC Confidence 998888765553322 1246789999998765554 4899999999999988888877433 333 2222 Q ss_pred cceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC--CC Q lcl|Aclame:pro 247 DRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--KV 324 (533) Q Consensus 247 eRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--nl 324 (533) .+-++..+ ++++..+.++....+..++++..--..+.|.+. .+ ..|++++.|.-. .+ T Consensus 208 ~~gil~~~-~~~~~~~~~e~~~~~~~~~~~~~~g~~n~~~~~----------vl----------~~g~~~~~l~~~~~d~ 266 (421) T protein:vir:10 208 MSGVIERP-KEAPAIKSQEKIDQLLAKWTDRYSGINNMFSVA----------LL----------QEGMSYKQMSQDNEKA 266 (421) T ss_pred ccEEEEec-CccCccCCHHHHHHHHHHHHHHhcCccccCcce----------ec----------CCCceEEecCCChhHH Confidence 23344443 234444445555555555554432112223221 11 135666666322 22 Q ss_pred ChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccceeEEecC Q lcl|Aclame:pro 325 DLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFRLVMNR 403 (533) Q Consensus 325 g~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~ 403 (533) .-++-.++..+.+.++.|||...|+..+.... +.+.-..+-|.+ -|.-+-.++++.|.+.|+....- ....+.|.. T Consensus 267 q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~-sn~e~~~~~f~~~tl~P~~~~ie~~ln~kL~~~~~~--~~~~v~fd~ 343 (421) T protein:vir:10 267 QLLQSRQWGVEEVCRLYKIPPHMVQMLAKATN-NNIEHQGLQFVMYTLLAWLKRHEGALQRDLLLPSER--RDLYIEFNV 343 (421) T ss_pred HHHHHHHHhHHHHHHHhCCCHHHcCCCcCCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccc--CCeEEEEec Confidence 22444568889999999999999975443222 233333444655 44555566777777777654321 233456654 Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCc Q lcl|Aclame:pro 404 SNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSP 483 (533) Q Consensus 404 dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (533) +... . .-+..|.+.+..+ -+..-||..|.-. .++-.++ ++-|+=..|.- . .+ T Consensus 344 ~~l~----~-~d~~~~~~~~~~~----------~~~G~~T~NE~R~-----~~gl~p~---~ggD~~~~~~n----~-~~ 395 (421) T protein:vir:10 344 SGLL----R-GDQKSRYESYALG----------RQWGWLSVNDIRR-----MENLPPI---AGGDKYLTPLN----M-VD 395 (421) T ss_pred hhhh----c-cCHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCC---CCcceeeeccc----c-cc Confidence 4431 1 1223344444332 1233466433221 1222222 11111111100 0 00 Q ss_pred ccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcc Q lcl|Aclame:pro 484 IESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGE 524 (533) Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 524 (533) +..+. +. +..+. +.+..++++.++.+ T Consensus 396 ~~~~~---~~--~~~~~----------~~~~~e~d~~~~~~ 421 (421) T protein:vir:10 396 SAQII---PG--DKKPT----------AQQMAEIDTILSRT 421 (421) T ss_pred ccccc---cC--CCCcc----------cccCcccccccccC Confidence 00100 00 00011 11111222333332 No 66 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=99.44 E-value=5.8e-12 Score=82.17 Aligned_cols=399 Identities=11% Similarity=0.086 Sum_probs=197.2 Q ss_pred HhhcccccccCcccCCCCcccCCCCCccccchhhcccc--cCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecC Q lcl|Aclame:pro 18 NFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRF--YGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPN 95 (533) Q Consensus 18 ~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~--ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d 95 (533) -+.+.+|+= ........+....+.. +.++ +.|..-+. +.+...|-|.+||+.|++.+-. T Consensus 1 ~~f~~~f~r----~~~~~~~~~~~~~~~~-----~~~~~~~~g~~v~~--------~~~l~~~~v~~~i~~Ia~~iA~-- 61 (413) T protein:vir:48 1 MFFSGLFQR----KSDAPVTTPAELAEAI-----GLSYDTYTGKRISS--------QRAMRLTAVYSCVRVLAESVGM-- 61 (413) T ss_pred Cccchhhcc----CccCCccchHHHHHhh-----hcCcccccCceech--------hhhhccHHHHHHHHHHHHhhhh-- Confidence 223333322 1111111111111111 1111 11222121 2344679999999999987331 Q ss_pred CCCceeeeecccccccHHHH-HHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceee Q lcl|Aclame:pro 96 ENGNIVDVVTKDIELAKAIL-SYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFS 166 (533) Q Consensus 96 ~~~~~v~v~l~~~e~s~si~-~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik 166 (533) .|+.+--++-+....++ ..+..+| .-....+.++..+++.|+.|..++-+ .+.+.+|.+|+|.+|+ T Consensus 62 ---~p~~~~~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~--~g~~~~L~~l~~~~v~ 136 (413) T protein:vir:48 62 ---LPCSLYKISGTLKTRVVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKA--LGEVVELLPIDPGCVE 136 (413) T ss_pred ---CceEEEEecCCcceeecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeC--CCcEEEEEEEcCceEE Confidence 12222111111111111 1233443 34567888999999999998886653 4568999999999999 Q ss_pred EEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 167 KRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSV 246 (533) Q Consensus 167 ~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAP 246 (533) +..+..+...|+++.. .+....+++.+|+|+.+..+++ .+|+|.|+.|.+.+.....+++...-+---.+. T Consensus 137 ~~~~~~~~~~y~~~~~-------~g~~~~~~~~evih~~~~~~d~--~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~ 207 (413) T protein:vir:48 137 PKLNSQWQPVYQVTFP-------DGSVDVLTQDEIWHVRTLTLDG--LVGLNPIAYAREAISLAAATEEHGARLFGNGAV 207 (413) T ss_pred EEEcCCceEEEEEEec-------CceEEEEccccEEEecCcCCCC--cccccHHHHHHHHHHHHHHHHHHHHHHHhccCC Confidence 9888776544433221 2334457889999998665554 489999999999998888888755443333344 Q ss_pred cceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC--CC Q lcl|Aclame:pro 247 DRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--KV 324 (533) Q Consensus 247 eRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--nl 324 (533) .+-++.++ +.+.+..+++-.+.+...|+. .+ +.|.+ + .+ ..|+++..|.=. .+ T Consensus 208 p~gil~~~-~~~~~e~~~~~~~~~~~~~~g---~~-n~g~~---------~-vl----------~~g~~~~~l~~~~~d~ 262 (413) T protein:vir:48 208 TSGVLRTE-QKLTPDAYERLKKDFEERHTG---LG-NAHRP---------M-IL----------EMGLDWKSMALNAEDS 262 (413) T ss_pred cceEEEeC-CCCCHHHHHHHHHHHHHHhcC---cc-ccCcc---------e-ec----------CCCceEEeccCChhHH Confidence 45555554 455555555555555555431 11 12222 1 11 135666666311 23 Q ss_pred ChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCccceeEEecC Q lcl|Aclame:pro 325 DLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFRLVMNR 403 (533) Q Consensus 325 g~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~ 403 (533) .-++-.++....+.++++||...|+..+.. ..+.+.-..+.|.++ |.-+-.++.+.|.+.|+....- ....+.|.. T Consensus 263 q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~-t~~n~e~~~~~f~~~~i~P~~~~ie~~l~~~L~~~~~~--~~~~~~fd~ 339 (413) T protein:vir:48 263 QFLETRKFQLEEICRLFRVPLHMVQNTDRA-TFNNIEELGLGFINYSLVPYLTRIEQRINTGLVRESKQ--GKFYAKFNA 339 (413) T ss_pred HHHHHHHHHHHHHHHHhCCCHHHhCCCcCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc--CCeEEEEec Confidence 334556788899999999999999854332 222333444556664 5555567777777776644321 123455543 Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCc Q lcl|Aclame:pro 404 SNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSP 483 (533) Q Consensus 404 dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (533) + ++... -++.|.+++..+ -+..-||..+.-. .++..++ ++-|+-. T Consensus 340 ~----~l~~~-d~~~~~~~~~~~----------~~~g~~T~NE~R~-----~~g~~p~---~ggD~~~------------ 384 (413) T protein:vir:48 340 G----ALLRG-DMKSRFEAYATG----------INWGIYSPNDCRD-----LEDMNPR---PGGDVYL------------ 384 (413) T ss_pred h----hhhcc-CHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCC---CCcceee------------ Confidence 3 23222 123344444331 1334566533221 1222222 1111111 Q ss_pred ccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCC Q lcl|Aclame:pro 484 IESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGG 522 (533) Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 522 (533) .|.+-...+.+.+..+..+. ++.+ +.++. T Consensus 385 --~~~n~~~~~~~~~~~~~~~~-----~~~~---~~~~~ 413 (413) T protein:vir:48 385 --TPMNMTTSPSAGDDNGKKKE-----SGDA---DKTAS 413 (413) T ss_pred --ccccccccccccccCCCCCC-----CCCc---cccCC Confidence 11110001111100000000 0000 00011 No 67 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=99.43 E-value=5e-12 Score=82.53 Aligned_cols=392 Identities=14% Similarity=0.097 Sum_probs=193.8 Q ss_pred cccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCceee Q lcl|Aclame:pro 23 MYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNIVD 102 (533) Q Consensus 23 ~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~ 102 (533) |+-....+. .+..+.. +++......+... ++..-|. + .+.++|-|.+||+.|++.+-.+ |+. T Consensus 1 m~f~~~~~~--~~~~~~~--~~~~~~~~~g~~~-~~~~v~~-------~-~al~~~~v~~~i~~ia~~ia~l-----p~~ 62 (409) T protein:vir:10 1 MLFRKGFKN--QSQEISI--DDKKILEWLGINP-SETYVNG-------K-SCLKQATVFGCIRILSDNISKL-----PIK 62 (409) T ss_pred CcccccccC--cCCCCCC--ChHHHHHHhcCCc-Ccceech-------h-hhhccHHHHHHHHHHHHhhhhC-----ceE Confidence 441111111 1122222 2221111111111 1111121 1 2346799999999999774322 221 Q ss_pred eecccccccHHHH-HHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeeccC Q lcl|Aclame:pro 103 VVTKDIELAKAIL-SYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPET 173 (533) Q Consensus 103 v~l~~~e~s~si~-~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g 173 (533) |--++ +-...++ ..+..+| .-....+..+..++++|+.|..++.+. .+-+.+|.+|+|.+|+++.+..+ T Consensus 63 ~~~~~-~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~-~G~~~~L~~i~~~~V~v~~~~~~ 140 (409) T protein:vir:10 63 IYQKK-DGIKRVPDHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKK-NGEIKGLYPLKSDGMKIFVDDTG 140 (409) T ss_pred EEEec-CCeeeccCchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC-CCcEEEEEEEcCCceEEEEcCCc Confidence 21110 0011111 1123333 345577888899999999999988764 35588999999999999987765 Q ss_pred cE-----EEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccc Q lcl|Aclame:pro 174 DT-----WYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDR 248 (533) Q Consensus 174 ~~-----e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeR 248 (533) .. -+|.|+. ..+....+++.+|||+.+...++ -+|+|-|+.+.+.+.....+++...-+=--.+..+ T Consensus 141 ~~~~~~~~~y~~~~------~~g~~~~~~~~evih~r~~~~d~--~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~ 212 (409) T protein:vir:10 141 LLNSENNVWYLYTD------DLGQRHKFMSDEILHFKGLTADG--LAGLSVIELLNHLIENGKSSETYLNNFFKNGLQVK 212 (409) T ss_pred cccccceEEEEEEe------CCceeEEeccccEEEecCcCCCC--cccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCc Confidence 32 2344432 23455678899999997655543 58999999999999888888874433322223334 Q ss_pred eeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC--CCCCh Q lcl|Aclame:pro 249 RVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG--SKVDL 326 (533) Q Consensus 249 r~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG--~nlg~ 326 (533) -++.++ +.+.+.++ +-+++.+++... --.+.|.+ .++ ..|++++.|.= ..+.- T Consensus 213 gil~~~-~~l~~e~~-~~~~~~~~~~~~---g~~n~~~~----------~vl----------~~g~~~~~l~~~~~d~q~ 267 (409) T protein:vir:10 213 GLVQYA-GDLNPEAE-EVFKENFERMSS---GLKNAHRI----------AML----------PIGYKFEPISQKLVDAQF 267 (409) T ss_pred EEEEcC-CCCCHHHH-HHHHHHHHHHhc---cccccCCc----------eec----------CCCceEEEccCChhhHHH Confidence 444443 34544433 334443333210 00112222 112 13456666632 23444 Q ss_pred HHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCccceeEEecCCc Q lcl|Aclame:pro 327 AEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSN 405 (533) Q Consensus 327 i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn 405 (533) ++-.+|..+.+.+++|||.+.|+..++. ..+.+.-..+.|..+ |.-+...+++.|.+.|++..... ..+.+.|..+. T Consensus 268 ~e~~~~~~~~Ia~~fgVPp~~lg~~~~~-~~~~~e~~~~~f~~~~l~P~~~~ie~~ln~kL~~~~~~~-~~~~~~fd~~~ 345 (409) T protein:vir:10 268 LENSQLTIRQIASVFGVKMHQLNDLDRA-THSNITEQNREFYIDTLQSILNMYELEINYKLFLISEIK-NGFYSKFNVDT 345 (409) T ss_pred HHHHHHHHHHHHHHhCCCHHHcCCCCCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhcc-CCcEEEEechh Confidence 5667899999999999999999854432 223333344456553 66677778888877776554322 23445555443 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCccc Q lcl|Aclame:pro 406 SIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIE 485 (533) Q Consensus 406 ~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (533) . ... -+..|.+.+..+ -+..-||.++.-. ..+..++ ++-|+=..+ ....|++ T Consensus 346 l----l~~-d~~~~~~~~~~~----------~~~G~~T~NE~R~-----~lgl~p~---~ggD~~~~~-----~n~~~~~ 397 (409) T protein:vir:10 346 I----LRA-DIKTRYESYKEA----------IQNGFKTPNEIRE-----LEEDEPL---EGGDVLLIN-----GNMIPVK 397 (409) T ss_pred h----hcc-CHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCC---CCcCeeeec-----cCccchh Confidence 2 111 122344444331 1223466433211 1222222 111111011 0001110 Q ss_pred ccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCccc Q lcl|Aclame:pro 486 SPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEE 525 (533) Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 525 (533) .+.+ ....||++ T Consensus 398 -------------------------~~~~---~~~kgGe~ 409 (409) T protein:vir:10 398 -------------------------MAGE---QYSKGGEK 409 (409) T ss_pred -------------------------hccc---cccccCCC Confidence 0000 00122222 No 68 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=99.43 E-value=9.6e-12 Score=80.99 Aligned_cols=423 Identities=11% Similarity=0.059 Sum_probs=203.9 Q ss_pred CCC--cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHH-HhhcC Q lcl|Aclame:pro 1 MPS--LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDR-MDYTD 77 (533) Q Consensus 1 ~~~--~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~-m~~~~ 77 (533) -|- |--|+..-...- .-..-.+|... .......+.. ..........++.|.... .|.. .+... T Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~~lf~~~----e~R~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~al~~ 70 (441) T protein:vir:79 5 NTDCYFVDFKSRKQSRK-ELVVVGIFYKN----EKRDLQYNED--DLQMMVQTLPGFQGTKLR-------QYKDIEAIRH 70 (441) T ss_pred cCccccccccccccchh-hhhcccccccc----ccccccCCCc--chHHHHHHhcccCccccc-------ccchhhhhcc Confidence 221 344555544441 22233344321 1111122211 110000011111111111 1111 22357 Q ss_pred hhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecC Q lcl|Aclame:pro 78 PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKG 149 (533) Q Consensus 78 PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~ 149 (533) |.|.+||+.|++.+-. .|+.+- ++.+.. ..+.+..+|+ -....+..+..+++.|+.|..++.+. T Consensus 71 ~~V~~cv~~Ia~~iA~-----lp~~~~-~~~~~~--~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~ 142 (441) T protein:vir:79 71 SDIFTAVMMIASDLAR-----MPIRVT-VNGQIN--YSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK 142 (441) T ss_pred HHHHHHHHHHHHhhcc-----Cceeee-cCcccc--ccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECC Confidence 8999999999876432 233332 111111 1223444443 23457788888999999999988764 Q ss_pred CCCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHH Q lcl|Aclame:pro 150 SDGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQ 229 (533) Q Consensus 150 ~k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~Nq 229 (533) .+-+.+|.+|+|.+|+++.+..|...|+.+.... ........+++.+|||+.+...++ -+|+|-|+.|.+.+.. T Consensus 143 -~G~~~~L~~i~~~~v~v~~d~~g~~~~~~~~~~~---~~~~~~~~~~~~dvih~k~~~~dg--~~G~spl~~~~~~i~~ 216 (441) T protein:vir:79 143 -TGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDS---NGNNIERNVKFEDMLDIKFYSLDG--INGLSLLDTLSRTIES 216 (441) T ss_pred -CCcEEEEEEEcCceeEEEECCCccEEEEEEEecc---CCceeEEEEccccEEEeccCCCCC--ccccCHHHHHHHHHHH Confidence 3448899999999999999988887766553221 112233467889999998654443 4899999999999988 Q ss_pred HHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHH-HHhhhceeeccCCCeeecccccchhhhHHhhhhcccc Q lcl|Aclame:pro 230 LRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIA-MQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRR 308 (533) Q Consensus 230 Lrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im-~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR 308 (533) ...+++...-+=---+-.+-++.++ |.+...+|.+-+++-. ..|. -..+.|.+ + .++ T Consensus 217 ~~~~~~~~~~~f~ng~~p~gil~~~-~~~~~~e~~e~~r~~~~~~~~----G~~nag~~---------~-vl~------- 274 (441) T protein:vir:79 217 DNNGKDFLNNFLRNGTHAGGILKMK-GVLDNKKARDRAREEFHKSFS----GTKQAGKV---------V-VLD------- 274 (441) T ss_pred HHHHHHHHHHHHhccCCCcEEEEcC-CCCCCHHHHHHHHHHHHHHhc----CccccCcc---------e-ecC------- Confidence 8888875443322223334455554 4454444444344322 2221 11111222 1 221 Q ss_pred cCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 309 GDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMV 386 (533) Q Consensus 309 ~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qL 386 (533) .|.+++.|.=. .+.-++-.+|..+.+.+++|||...|+.... + +.+....+-|..-+.-+..++++.|.+.| T Consensus 275 ---~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~--~s~~q~~~~~~~tl~P~~~~ie~eln~kl 348 (441) T protein:vir:79 275 ---ESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA-N--MSITDANLDYLSTLKPYITCVCAELNFKF 348 (441) T ss_pred ---CCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCC-C--ccHHHHHHHHHHHHHHHHHHHHHHHhhhc Confidence 24555555311 2233455677888999999999999975332 2 22333444455566666677888787776 Q ss_pred hhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcc Q lcl|Aclame:pro 387 RMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGG 466 (533) Q Consensus 387 ilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~ 466 (533) .... ....+.|..+. +.... ...|.+++..+- +..-||..|.-. .++ ++|-++ T Consensus 349 ~~~~----~~~~~~fd~~~----llr~D-~~~~~~~~~~~i----------~~G~~T~NE~R~-----~~g---l~Pi~g 401 (441) T protein:vir:79 349 NDEY----VNREFKFDTTE----IRVVD-EKTQAEIDKINI----------DSGKMNIDEIRQ-----RDG---LAPIPG 401 (441) T ss_pred cccc----cCceEEeechh----hhccC-HHHHHHHHHHHH----------hCCCcCHHHHHH-----HhC---CCCCCC Confidence 4221 12334453322 22211 233444443321 223466543321 122 222112 Q ss_pred cccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccC Q lcl|Aclame:pro 467 FGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEE 526 (533) Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (533) -++..-+ ......|++..........+......-|||- .+ T Consensus 402 gd~~~~~---~~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~-----------------~e 441 (441) T protein:vir:79 402 GNGSIHR---VDLNHVNIELVDEYQMNKSRATDKKLKGGEE-----------------NE 441 (441) T ss_pred CCcceEe---ecccccccccccccccccccccccccCCCCC-----------------CC Confidence 1111111 1122222333222111222222222223321 11 No 69 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=99.43 E-value=9.6e-12 Score=80.99 Aligned_cols=423 Identities=11% Similarity=0.059 Sum_probs=203.9 Q ss_pred CCC--cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHH-HhhcC Q lcl|Aclame:pro 1 MPS--LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDR-MDYTD 77 (533) Q Consensus 1 ~~~--~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~-m~~~~ 77 (533) -|- |--|+..-...- .-..-.+|... .......+.. ..........++.|.... .|.. .+... T Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~~lf~~~----e~R~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~al~~ 70 (441) T protein:vir:94 5 NTDCYFVDFKSRKQSRK-ELVVVGIFYKN----EKRDLQYNED--DLQMMVQTLPGFQGTKLR-------QYKDIEAIRH 70 (441) T ss_pred cCccccccccccccchh-hhhcccccccc----ccccccCCCc--chHHHHHHhcccCccccc-------ccchhhhhcc Confidence 221 344555544441 22233344321 1111122211 110000011111111111 1111 22357 Q ss_pred hhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecC Q lcl|Aclame:pro 78 PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKG 149 (533) Q Consensus 78 PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~ 149 (533) |.|.+||+.|++.+-. .|+.+- ++.+.. ..+.+..+|+ -....+..+..+++.|+.|..++.+. T Consensus 71 ~~V~~cv~~Ia~~iA~-----lp~~~~-~~~~~~--~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~ 142 (441) T protein:vir:94 71 SDIFTAVMMIASDLAR-----MPIRVT-VNGQIN--YSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK 142 (441) T ss_pred HHHHHHHHHHHHhhcc-----Cceeee-cCcccc--ccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECC Confidence 8999999999876432 233332 111111 1223444443 23457788888999999999988764 Q ss_pred CCCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHH Q lcl|Aclame:pro 150 SDGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQ 229 (533) Q Consensus 150 ~k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~Nq 229 (533) .+-+.+|.+|+|.+|+++.+..|...|+.+.... ........+++.+|||+.+...++ -+|+|-|+.|.+.+.. T Consensus 143 -~G~~~~L~~i~~~~v~v~~d~~g~~~~~~~~~~~---~~~~~~~~~~~~dvih~k~~~~dg--~~G~spl~~~~~~i~~ 216 (441) T protein:vir:94 143 -TGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDS---NGNNIERNVKFEDMLDIKFYSLDG--INGLSLLDTLSRTIES 216 (441) T ss_pred -CCcEEEEEEEcCceeEEEECCCccEEEEEEEecc---CCceeEEEEccccEEEeccCCCCC--ccccCHHHHHHHHHHH Confidence 3448899999999999999988887766553221 112233467889999998654443 4899999999999988 Q ss_pred HHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHH-HHhhhceeeccCCCeeecccccchhhhHHhhhhcccc Q lcl|Aclame:pro 230 LRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIA-MQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRR 308 (533) Q Consensus 230 Lrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im-~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR 308 (533) ...+++...-+=---+-.+-++.++ |.+...+|.+-+++-. ..|. -..+.|.+ + .++ T Consensus 217 ~~~~~~~~~~~f~ng~~p~gil~~~-~~~~~~e~~e~~r~~~~~~~~----G~~nag~~---------~-vl~------- 274 (441) T protein:vir:94 217 DNNGKDFLNNFLRNGTHAGGILKMK-GVLDNKKARDRAREEFHKSFS----GTKQAGKV---------V-VLD------- 274 (441) T ss_pred HHHHHHHHHHHHhccCCCcEEEEcC-CCCCCHHHHHHHHHHHHHHhc----CccccCcc---------e-ecC------- Confidence 8888875443322223334455554 4454444444344322 2221 11111222 1 221 Q ss_pred cCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 309 GDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMV 386 (533) Q Consensus 309 ~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qL 386 (533) .|.+++.|.=. .+.-++-.+|..+.+.+++|||...|+.... + +.+....+-|..-+.-+..++++.|.+.| T Consensus 275 ---~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~--~s~~q~~~~~~~tl~P~~~~ie~eln~kl 348 (441) T protein:vir:94 275 ---ESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA-N--MSITDANLDYLSTLKPYITCVCAELNFKF 348 (441) T ss_pred ---CCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCC-C--ccHHHHHHHHHHHHHHHHHHHHHHHhhhc Confidence 24555555311 2233455677888999999999999975332 2 22333444455566666677888787776 Q ss_pred hhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcc Q lcl|Aclame:pro 387 RMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGG 466 (533) Q Consensus 387 ilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~ 466 (533) .... ....+.|..+. +.... ...|.+++..+- +..-||..|.-. .++ ++|-++ T Consensus 349 ~~~~----~~~~~~fd~~~----llr~D-~~~~~~~~~~~i----------~~G~~T~NE~R~-----~~g---l~Pi~g 401 (441) T protein:vir:94 349 NDEY----VNREFKFDTTE----IRVVD-EKTQAEIDKINI----------DSGKMNIDEIRQ-----RDG---LAPIPG 401 (441) T ss_pred cccc----cCceEEeechh----hhccC-HHHHHHHHHHHH----------hCCCcCHHHHHH-----HhC---CCCCCC Confidence 4221 12334453322 22211 233444443321 223466543321 122 222112 Q ss_pred cccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccC Q lcl|Aclame:pro 467 FGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEE 526 (533) Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (533) -++..-+ ......|++..........+......-|||- .+ T Consensus 402 gd~~~~~---~~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~-----------------~e 441 (441) T protein:vir:94 402 GNGSIHR---VDLNHVNIELVDEYQMNKSRATDKKLKGGEE-----------------NE 441 (441) T ss_pred CCcceEe---ecccccccccccccccccccccccccCCCCC-----------------CC Confidence 1111111 1122222333222111222222222223321 11 No 70 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=99.43 E-value=4.6e-12 Score=82.72 Aligned_cols=405 Identities=9% Similarity=0.012 Sum_probs=189.5 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCcc-ccchhhcccccC-----------ccccchHHHHH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHP-FATAGYASRFYG-----------GIEFNRFFLYD 68 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~-~~~~~~~~~~yg-----------g~~~n~~~li~ 68 (533) |=-| +.+.+.++|...- ...+++..... ..++.-...+.+ +...+. --+. T Consensus 1 Mgl~----------------d~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g-~~v~ 62 (431) T protein:vir:10 1 MGLF----------------DFIRREKQPEAQA-RPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNG-GTGR 62 (431) T ss_pred Ccch----------------hhhhcCccccccc-ccccccccccccccccccccccccccchHHHHhhccCccCc-ceec Confidence 2111 1222222222111 11111110000 000000001110 000000 0011 Q ss_pred HHHHHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHH-HHHHHHHHhh--------hHHHHHHHHHHHhhcC Q lcl|Aclame:pro 69 MYDRMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKA-ILSYLDYVIN--------IEKNAYPIIRNMIKYG 139 (533) Q Consensus 69 ~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~s-i~~~i~~ll~--------f~~~~~e~~R~wyvDG 139 (533) . . .+.+.|-|.+||+.|++.+= ..|+.|--++ +-.+. .-..+..+|+ -....+.++..+++.| T Consensus 63 ~-~-~al~~~~V~~ci~~Ia~~iA-----~lp~~v~~~~-~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~G 134 (431) T protein:vir:10 63 E-T-RALRNMAVLRCVTLISGTIG-----MLPMNLISSD-DSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDG 134 (431) T ss_pred h-h-hhhccHHHHHHHHHHHHhhc-----cCceEEEEec-CceeeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcC Confidence 1 2 23357999999999987632 1122221110 00000 1122344443 2346778889999999 Q ss_pred ceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchh Q lcl|Aclame:pro 140 DMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSY 219 (533) Q Consensus 140 r~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~ 219 (533) +.|..++.| .+.+.+|..|+|.+|++..+..+...|. |... .+....+++++|+|+.+-..++ -+|+|. T Consensus 135 na~~~i~r~--~g~~~~L~pl~~~~v~~~~~~~~~~~y~-~~~~------~g~~~~~~~~dViHir~~~~dg--~~G~sp 203 (431) T protein:vir:10 135 ESMARIVWS--GNRPIRLIPMDRGSAKGRLTSTWQIVYD-YTTP------TGDKIELPAREVFHLRDLSIDG--VSGVSR 203 (431) T ss_pred CeEEEEEEc--CCceEEEEEEcCceeEEEEcCCCeEEEE-EEeC------CceEEEEchhhEEEecCcCCCC--cccccH Confidence 999998876 3668899999999999988877766544 3221 2334568899999997544443 589999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCC-CCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhh Q lcl|Aclame:pro 220 LESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDV-GNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIES 298 (533) Q Consensus 220 L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidv-Gnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~s 298 (533) |+.|.+.+.....+++...-+----+ +.-.++.+ +++-+.++++..+.+...|. -..+.|.+ + T Consensus 204 i~~~~~~i~~~~~~~~~~~~~f~ng~--~p~gil~~~~~ls~e~~~~~~~~~~~~~~----g~~n~g~~---------~- 267 (431) T protein:vir:10 204 VKLSGNALELAEQAERAASRTFRTGV--MAGGAIEVPKELSDNAYGRMKASVQENHT----GSENAGSW---------M- 267 (431) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC--CccEEEecCCCCCHHHHHHHHHHHHHHhc----CccccCCc---------e- Confidence 99999999888888885544333333 33334444 35555554444444444432 11122222 1 Q ss_pred HHhhhhcccccCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHH Q lcl|Aclame:pro 299 ILKDYFIPRRGDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQ 375 (533) Q Consensus 299 mleDywlprR~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr 375 (533) ++ ..|.+++-|.-. .+.-++--+|-...+.+++|||...|+...+. -.+.+....+-|.++ +.-+- T Consensus 268 vl----------~~g~~~~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp~~lg~~~~~-t~sn~eq~~~~f~~~tL~P~~ 336 (431) T protein:vir:10 268 LL----------EEGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLMMDDTS-WGSGIEQLAIFFIQYGLSHWF 336 (431) T ss_pred ec----------CCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCC-ccccHHHHHHHHHHHHHHHHH Confidence 11 124455544211 22233445666788999999999999864432 223344444456654 55555 Q ss_pred HHHHHHHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChh-hhHHHHHHh Q lcl|Aclame:pro 376 GFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYD-LKPQEEVAE 454 (533) Q Consensus 376 ~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde-~~~q~~~i~ 454 (533) +++.+.|.+.|+..... ....+.|..+. |.... +..|.+.+..+-.= |- +=.-||.. ..+. T Consensus 337 ~~ie~~ln~~Ll~~~~~--~~~~~~fd~~~----llr~d-~~~r~~~~~~~~~~-G~-----~~g~lT~NE~R~~----- 398 (431) T protein:vir:10 337 VSWEQAAARAFLPEKML--GQRQFKFNEGA----LLRGT-LNDQAAFFSKALGA-GG-----QSPWMKQNEVREM----- 398 (431) T ss_pred HHHHHHHHhhccChhhc--CCceEEEechh----hhccC-HHHHHHHHHHHHhc-cc-----ccCccCHHHHHHH----- Confidence 66777777777543221 12345564333 32222 34555544432100 00 00115643 3221 Q ss_pred hhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccC Q lcl|Aclame:pro 455 AAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEEL 503 (533) Q Consensus 455 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (533) ++-.++. .+..|+-. .|......+.+.+++... T Consensus 399 -~gl~p~~-~~~gD~~~--------------~p~n~~~~~~~~~~p~~~ 431 (431) T protein:vir:10 399 -LDLPRAD-DPVADQLR--------------NPMTQKQKGSGDEPPATT 431 (431) T ss_pred -hCCCCCC-Ccccccee--------------cccccccCCCCCCCCCCC Confidence 1221111 11111111 111111111111111100 No 71 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=99.42 E-value=1.2e-11 Score=80.45 Aligned_cols=411 Identities=14% Similarity=0.139 Sum_probs=193.1 Q ss_pred CCC---cchhhhhhhHHHHHHhhcccccccCcc-cCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MPS---LEKYKKLNEAVNFTNFLSPMYGMGAPH-GAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYT 76 (533) Q Consensus 1 ~~~---~~~w~k~de~~~~~~~~~~~~s~~~p~-~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~ 76 (533) ||- |.+|.+. ++ .+.=..|. ...+.+..+.+.... ......+. .|..+ |. +.+.. T Consensus 1 ~~~~~~mg~f~r~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~g~~v-~~--------~~al~ 59 (432) T protein:vir:81 1 MPDEKKLGLFGQL---------KA-MFVPPDPVDIGGGQTFTPVNATAR-DLGIIISD-TGAAV-NA--------DAIMR 59 (432) T ss_pred CCchhhcchhhhh---------hh-hcccccccccccccccccCccchh-hhcccccc-cCccc-ch--------Hhhhc Confidence 664 4444432 11 11111111 122223333321100 00000000 11112 11 12345 Q ss_pred ChhHHHHHHHhhceeeecCCCCceeeeecccccccHH-HHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEee Q lcl|Aclame:pro 77 DPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKA-ILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILE 147 (533) Q Consensus 77 ~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~s-i~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kii 147 (533) +|.|.+||+.|++.+=-. |+.|-.+..+-... +..-+.++|+ -....+.++..++++|+.|..++. T Consensus 60 ~~~V~~~i~~Ia~~ia~l-----p~~~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~ 134 (432) T protein:vir:81 60 LDAVAACVKLVSQAIAAM-----PLTMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVV 134 (432) T ss_pred cHHHHHHHHHHHHhhhhC-----ceeeEEecCCcceecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEe Confidence 799999999999773322 21111000000000 1112334442 234677888899999999988766 Q ss_pred cCCCCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHH Q lcl|Aclame:pro 148 KGSDGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIW 227 (533) Q Consensus 148 d~~k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~ 227 (533) + .+.+.+|.+|+|.+|++.++..|...|. |+.. .+....+++++|+|+.+...++ -+|+|.|+.|.+.+ T Consensus 135 ~--~g~~~~L~~l~~~~v~v~~~~~g~~~y~-~~~~------~g~~~~~~~~~iih~r~~~~dg--~~G~spi~~~~~~i 203 (432) T protein:vir:81 135 T--DGRIESLQYLANDRLTITTDPKGNTAYR-YRRT------DGQMIDIPKQQIWKIMGYSLDG--ENGLSAIRYGAQIF 203 (432) T ss_pred c--CCcEEEEEEEcCCceEEEECCCCcEEEE-EEec------CceEEEEccccEEEecCCCCCC--cccccHHHHHHHHH Confidence 4 3568999999999999999988765444 3221 2344678899999997554443 48999999999988 Q ss_pred HHHHHHHHHH-HHHHHhccccceeeecCC-CCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhc Q lcl|Aclame:pro 228 NQLRLMEDAL-MLYRVVRSVDRRVFYVDV-GNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFI 305 (533) Q Consensus 228 NqLrm~Edal-VIyRi~RAPeRr~fyidv-Gnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywl 305 (533) ..-..+++.. -.|+ -=-++-..+.+ +.+-+..+ +.+..+|.. -.+.|.+ + +|+ T Consensus 204 ~~~~~~~~~~~~~f~---ng~~~~gil~~~~~l~~e~~----~~~~~~~~~----~~nag~~---------~-vl~---- 258 (432) T protein:vir:81 204 GTAIAAEAQAARAFR---NGQLQSVYYQIDRFLTDDQY----DSFAKKVSG----SVEAGRA---------P-LLE---- 258 (432) T ss_pred HHHHHHHHHHHHHHh---cCCCcceEEecCCCCCHHHH----HHHHHHHhh----hhcCCCc---------e-ecC---- Confidence 8877777633 3332 22233334444 34433332 233333321 0112222 1 121 Q ss_pred ccccCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCC--ccchhhhhHHHHHHHHH-HHHHHHHHHH Q lcl|Aclame:pro 306 PRRGDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGD--VNAKNTLATQDIKFNNT-IKRIQGFFVE 380 (533) Q Consensus 306 prR~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~--~gr~~eI~rde~kF~kf-I~rLr~~F~~ 380 (533) .|++++.|.=. .+.-++-.+|....+.++++||...|+.... .+.++.+....+-|.++ |.-+-.++.+ T Consensus 259 ------~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~sn~eq~~~~f~~~tl~P~~~~ie~ 332 (432) T protein:vir:81 259 ------GGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGFLTMTLSPWLRRIEQ 332 (432) T ss_pred ------CCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccccccchHHHHHHHHHHHHHHHHHHHHHH Confidence 24566655211 2233444678889999999999999986543 33344554445556663 4555566777 Q ss_pred HHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccC Q lcl|Aclame:pro 381 ELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGG 460 (533) Q Consensus 381 ~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~ 460 (533) .|.+.|+..... ....+.|..+. +... -+++|.+++..+- +..-||..|.-.. ++- T Consensus 333 ~l~~kLl~~~~~--~~~~~~fd~~~----llr~-d~~~r~~~~~~~~----------~~G~~t~NE~R~~-----~gl-- 388 (432) T protein:vir:81 333 SIALNLLSPAER--RRYFADFDTSA----LLRA-DSAARSSYYSQLV----------NNGLMTRDEAREI-----EGL-- 388 (432) T ss_pred HHHhhccCcccc--CceEEEeechh----hhcc-CHHHHHHHHHHHH----------hCCCCCHHHHHHH-----hCC-- Confidence 777777643221 12245554432 2222 2345666555431 2344665332211 222 Q ss_pred CCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCcc-CcCcccCC Q lcl|Aclame:pro 461 LFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGEL-NLGGAFEE 515 (533) Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 515 (533) +|-++.+.-.. ......|++..... +. +. +.+|+- +-+...++ T Consensus 389 -pp~~g~~~~~~----~~~~~~pl~~~~~~-----~~-~~-~~~~~~n~~~~~~~~ 432 (432) T protein:vir:81 389 -PKLGGNAAVLT----VQSAMVPLDSIGLQ-----AS-PE-PASGLGNQQQDKVSK 432 (432) T ss_pred -CCCCCCcceEe----ecCcccchhhhccC-----CC-CC-CCCCCCCcccccccC Confidence 22111111100 01111122111110 00 00 001100 00011111 No 72 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=99.42 E-value=3.5e-12 Score=83.37 Aligned_cols=402 Identities=15% Similarity=0.155 Sum_probs=191.7 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCC--cccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcCh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGS--SMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDP 78 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~ga--s~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~P 78 (533) ||-+..=+|.-.. .+|+.......... ++++. .+ ........++.+.. ...|..++ .+| T Consensus 1 ~~~~~~~~~~~~m--------~~F~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~------~~~~~~~~-~~~ 61 (413) T protein:vir:96 1 MPGVSEIRKDKNL--------KFFNNKRSPTEESKAKDEIPK---AP-QVVMTLPNFFKELI------SDGYTKLS-DSP 61 (413) T ss_pred CCccchhhhhhcC--------CccccCCCcchhhhhhccccc---cc-cccccchhhHhhhc------cchhHHHh-hch Confidence 5554322221111 23333211111000 11110 11 00000111111111 11233344 579 Q ss_pred hHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCC Q lcl|Aclame:pro 79 LISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGS 150 (533) Q Consensus 79 EV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~ 150 (533) .|.+||+.|++.+-.. |+.+--++.+-...+...+..+| .-....+.++..+++.|+.|..++.+.. T Consensus 62 ~v~~cI~~ia~~ia~~-----~~~~~~~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~ 136 (413) T protein:vir:96 62 EVRMAVDCIADLVSNM-----TIQLMQNGETGDKRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVS 136 (413) T ss_pred HHHHHHHHHHHhhccC-----ceEEEEecCCCccccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCC Confidence 9999999999875422 22221111111112223344444 3456778889999999999999887654 Q ss_pred CCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHH Q lcl|Aclame:pro 151 DGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQL 230 (533) Q Consensus 151 k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqL 230 (533) ..-+.+|.+|||.+|++..+. +..+|.|+.. +..+++.+|+|+.++...+.+-+|.|.|..|.+.+... T Consensus 137 g~~~~~L~~l~~~~v~~~~~~--~~~~y~~~~~---------~~~~~~~evih~k~~~~~~~~~~G~s~~~~~~~~i~~~ 205 (413) T protein:vir:96 137 GDKIIGLTPISPYKVTFNVSD--DDLDYSITFD---------NKEYDPSTLLHFVLNPSIERPFIGTGYKVALKDIVGNL 205 (413) T ss_pred CCceEEEEEecCceeEEEEcC--CeEEEEEeec---------CcEEchhhEEEEeccCCCCCccccccHHHHHHHHHHHH Confidence 445889999999999888764 3345555322 12356899999986433322348999999999999998 Q ss_pred HHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccC Q lcl|Aclame:pro 231 RLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGD 310 (533) Q Consensus 231 rm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g 310 (533) ..+++...-+----+..+-++.++ +++-+..+++..+.+...|.. ....|.+. +++ -+| T Consensus 206 ~~~~~~~~~~~~ng~~p~gil~~~-~~l~~e~~~~~~~~~~~~~~g----~~n~g~~~----------vl~------~~~ 264 (413) T protein:vir:96 206 KQASVTKKGFMASEYMPNLIVSVD-SDSDELSDEEGRENFEEMYLK----RKEAGKPW----------IIP------EGM 264 (413) T ss_pred HHHHHHHHHHHhccCCccEEEEeC-CCCCHHHHHHHHHHHHHHhcC----ccccCcee----------eec------CCc Confidence 888884443333333334445444 456666555555555444421 11122211 110 011 Q ss_pred CCcceeeecCCCCCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhc Q lcl|Aclame:pro 311 RRAVEIDILQGSKVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMN 389 (533) Q Consensus 311 ~~gtEi~TLpG~nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk 389 (533) ....++..+.--.+.-++-.+|..+.+.+++|||...|+..+ +++.+ -..|.+ -|.-+...|.+.|.+.|+.+ T Consensus 265 ~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~----~~~~~--~~~~~~~~l~P~~~~ie~~ln~~ll~~ 338 (413) T protein:vir:96 265 VNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLLGVGT----YNKDE--FNNFINTKIMSIAQVIQQTYNKLIVEE 338 (413) T ss_pred ccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCc----chHHH--HHHHHHHHHHHHHHHHHHHHHHhhCCC Confidence 111233222111233344566888999999999999997321 11211 123444 35556667888888777643 Q ss_pred cCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCccccc Q lcl|Aclame:pro 390 KEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGE 469 (533) Q Consensus 390 ~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~ 469 (533) .+.+.|..+. +.... +++|.+++..+ + +..-||..|.- +..+..++ ++.|+ T Consensus 339 ------~~~~~fd~~~----ll~~d-~~~~~~~~~~~---~-------~~G~~t~NE~R-----~~~g~~p~---~~gd~ 389 (413) T protein:vir:96 339 ------DMYFSLNPRS----LYNYS-LTEMVSAGAQM---T-------QLNALRRNEFR-----NWVGMPPD---AEMDD 389 (413) T ss_pred ------CcEEEEechh----hhccC-HHHHHHHHHHH---H-------hCCCcCHHHHH-----HHhCCCCC---CCcce Confidence 3445554333 32222 33455555432 1 23445643321 12222222 22222 Q ss_pred ccchhhhcCccCCcccccCCCcccccCCCCCccCCCcc Q lcl|Aclame:pro 470 ETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGEL 507 (533) Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (533) -..+. -..|++.-.. .....|||- T Consensus 390 ~~~~~-----n~~~~~~~~~---------~~~~~~~dt 413 (413) T protein:vir:96 390 LLVLE-----NYLQQKDLVN---------QKKLIQDET 413 (413) T ss_pred eeecc-----cccchhhccc---------ccCCCCCCC Confidence 11111 0111100000 000011110 No 73 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=99.42 E-value=1.1e-11 Score=80.73 Aligned_cols=413 Identities=14% Similarity=0.120 Sum_probs=196.4 Q ss_pred CCC---cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcC Q lcl|Aclame:pro 1 MPS---LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTD 77 (533) Q Consensus 1 ~~~---~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~ 77 (533) ||- +-+|.+. ++-+..-++.....+.+..+.+.. ...........|..-|. ..+.++ T Consensus 1 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~v~~--------~~al~~ 60 (432) T protein:vir:10 1 MPDEKKLGLLGQL---------KAMFVPPDPVDIGGGQTFTPVNAT---ARDLGIIISDTGAAVNA--------DAIMRL 60 (432) T ss_pred CCCCcccchhhhh---------HhhcCCccccccccccccccCcch---hhhhcccccccCcccch--------hhhhcc Confidence 443 3333321 111111111112233343343311 10000000011211121 234467 Q ss_pred hhHHHHHHHhhceeeecCCCCceeeeecccccccHH-HHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeec Q lcl|Aclame:pro 78 PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKA-ILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEK 148 (533) Q Consensus 78 PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~s-i~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid 148 (533) |-|..||+.|++.+=.. |+.|-.++.+-... +..-+..+| .-....+.++..++++|+.|..++.+ T Consensus 61 ~~V~~~i~~Ia~~ia~l-----p~~~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~ 135 (432) T protein:vir:10 61 DAVAACVKLVSQAIAAM-----PLTMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT 135 (432) T ss_pred hHHHHHHHHHHHhhhhC-----ceeEEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec Confidence 99999999999764322 22221111111111 112233443 33456778888999999999887764 Q ss_pred CCCCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHH Q lcl|Aclame:pro 149 GSDGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWN 228 (533) Q Consensus 149 ~~k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~N 228 (533) .+.+.+|.+|+|.+|+++.+..|...|+.+.. .+....+++++|+|+.+...++ -+|+|.|..|.+.+. T Consensus 136 --~g~~~~L~~l~~~~v~v~~~~~g~~~y~~~~~-------~g~~~~~~~~~iih~~~~~~dg--~~G~spi~~~~~~i~ 204 (432) T protein:vir:10 136 --DGRIESLQYLANDRLTITTDTKGNTAYRYRRT-------DGQMIDIPKQQIWKIMGYSLDG--ENGLSAIRYGAQIFG 204 (432) T ss_pred --CCcEEEEEEEcCCceEEEEcCCCcEEEEEEec-------CceEEEEcCccEEEecCCCCCC--cccccHHHHHHHHHH Confidence 35689999999999999999887755543321 2334568899999997544443 489999999999998 Q ss_pred HHHHHHHH-HHHHHHhccccceeeecCC-CCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcc Q lcl|Aclame:pro 229 QLRLMEDA-LMLYRVVRSVDRRVFYVDV-GNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIP 306 (533) Q Consensus 229 qLrm~Eda-lVIyRi~RAPeRr~fyidv-Gnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlp 306 (533) .....++. .-.|+- -+ +.-..+.+ +.+-+...+ .+..+|.. -.+.|.+ .+|+ T Consensus 205 ~~~~~~~~~~~~f~n-g~--~~~gil~~~~~l~~e~~~----~~~~~~~~----~~nag~~----------~vl~----- 258 (432) T protein:vir:10 205 TAIAAEAQAARAFRN-GQ--LQSVYYQIDRFLTDDQYD----SFAKKVSG----SVEAGRA----------PLLE----- 258 (432) T ss_pred HHHHHHHHHHHHHhc-CC--CcceEEecCCCCCHHHHH----HHHHHHhh----hhhCCCc----------eecC----- Confidence 88877774 333331 12 23334444 344333333 23333321 0111222 1221 Q ss_pred cccCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCC--ccchhhhhHHHHHHHHH-HHHHHHHHHHH Q lcl|Aclame:pro 307 RRGDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGD--VNAKNTLATQDIKFNNT-IKRIQGFFVEE 381 (533) Q Consensus 307 rR~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~--~gr~~eI~rde~kF~kf-I~rLr~~F~~~ 381 (533) .|++++.|.=. .+.-++-.+|....+.+++|||...|+.... ++.++.+....+-|..+ |.-+-.++.+. T Consensus 259 -----~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~~~~sn~e~~~~~f~~~tl~P~~~~ie~~ 333 (432) T protein:vir:10 259 -----GGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGFLSMTLSPWLRRIEQS 333 (432) T ss_pred -----CCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcccccchHHHHHHHHHHHHHHHHHHHHHHH Confidence 24455555211 1223344678899999999999999986543 34445555555567663 55555667777 Q ss_pred HhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCC Q lcl|Aclame:pro 382 LERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGL 461 (533) Q Consensus 382 l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~ 461 (533) |.+.|+..... ..+.+.|..+.. ... -.+.|.+++..+- +..-||..|.-. .++-.++ T Consensus 334 ln~kL~~~~~~--~~~~~~fd~~~l----l~~-d~~~r~~~~~~~~----------~~G~~T~NE~R~-----~~glppi 391 (432) T protein:vir:10 334 IALNLLSPAER--RRYFADFDTSAL----LRA-DSAARSSYYSQLV----------NNGLMTRDEARE-----IEGLPKL 391 (432) T ss_pred HHhhhcCcccc--CceEEEeechhh----hcc-CHHHHHHHHHHHH----------hCCCCCHHHHHH-----HhCCCCC Confidence 88777654321 234566654433 222 2344555555431 234466533221 1222222 Q ss_pred CCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCch Q lcl|Aclame:pro 462 FDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFE 517 (533) Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (533) ++.+.-.. ......|++...... ..++ .+|+-|- ...+..+ T Consensus 392 ---~g~~~~~~----~~~~~~pl~~~~~~~----~~~~---~~~~~~~-~~~~~~~ 432 (432) T protein:vir:10 392 ---GGNAAVLT----VQSAMVPLDSIGLQA----SPEP---ASGLGNQ-QQDKVSK 432 (432) T ss_pred ---CCCcceEe----ecCcccchhhhcccC----CCCC---CCCCCCc-ccccccC Confidence 11111110 000001111110000 0000 0110000 0000000 No 74 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=99.42 E-value=1.8e-11 Score=79.55 Aligned_cols=395 Identities=15% Similarity=0.130 Sum_probs=190.3 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~A 83 (533) |.+|.+. ....+. .++.-..+.++.. +... ... .+.++|.|.+| T Consensus 1 m~~f~~~-----------------------~~~~~~---~~~~~~~~~~~~~-~~~~------~~~---~Al~~~~V~~~ 44 (406) T protein:vir:97 1 MSFFQPL-----------------------GTSKVS---YDDYISSVLAGDV-SQKY------LGV---SALKNSDILTA 44 (406) T ss_pred Ccccccc-----------------------CCCCCC---cchHHHHHhcCCC-Cccc------ccc---hhhccHHHHHH Confidence 4444321 001111 1111111221111 1101 111 24467999999 Q ss_pred HHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCee Q lcl|Aclame:pro 84 LDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIE 155 (533) Q Consensus 84 Id~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~ 155 (533) |+.|++.+=.. |+.+.-++-+.... ..+..+| ......+..+..+++.|+.|..++.+...+.+. T Consensus 45 i~~Ia~~iA~l-----p~~~~~~~g~~~~~--~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~ 117 (406) T protein:vir:97 45 TSIIAGDIARF-----PLVKKDVNGDIIHD--EDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQAL 117 (406) T ss_pred HHHHHHhhhhC-----eeEEEecCcccccc--chHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEE Confidence 99999874422 22222222111000 1233333 345677888899999999999888765556688 Q ss_pred eeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 KFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMED 235 (533) Q Consensus 156 elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed 235 (533) +|.+|+|.+|++.++..+...| .|+.. .++....+++.+|||+.+...++ -+|+|-|..|.+.+.....+++ T Consensus 118 ~L~~i~p~~v~v~~~~~~~~~y-~~~~~-----~~~~~~~~~~~evih~r~~~~dg--~~G~spi~~~~~~i~~~~a~~~ 189 (406) T protein:vir:97 118 QFQFYRPSETTVEETDNHEIVY-TFTDM-----LTAKQVKCFAHDVIHWKFFSHDT--ILGRSPLLSLGDEIDLQTGGIN 189 (406) T ss_pred EEEEECCCeeEEEEcCCceEEE-EEEec-----CCceEEEEccccEEEecCCCCCC--cccccHHHHHHHHHHHHHHHHH Confidence 9999999999998887775544 34322 23445678889999997543333 3699999999999988888888 Q ss_pred HHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcce Q lcl|Aclame:pro 236 ALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVE 315 (533) Q Consensus 236 alVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtE 315 (533) ...-+----++. .++...-+.+-+... +-+++.+.++. -- .+.|.+. .|+ .|.+ T Consensus 190 ~~~~~f~ng~~~-~~i~~~~~~l~~e~~-~~~~~~~~~~~---~g-~n~g~~~----------vl~----------~g~~ 243 (406) T protein:vir:97 190 TLIKFFKDGFSS-GILTMKGAQLSGDAR-QRARQEFEKMR---EG-SVGGSPL----------VFD----------STME 243 (406) T ss_pred HHHHHHhccCCC-ceEEecCCCCCHHHH-HHHHHHHHHHh---cc-cccCcee----------ecC----------CCce Confidence 544333233443 343333344433333 33333333321 11 2233321 111 2456 Q ss_pred eeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCC Q lcl|Aclame:pro 316 IDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEF 392 (533) Q Consensus 316 i~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~ 392 (533) ++.|.=. .+.-++-.+|-.+.+.++++||...|+...+.+. +.-....|.++ |.-+-..+.+.|.+.|+..... T Consensus 244 ~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~~~---~e~~~~~f~~~~l~P~~~~ie~~l~~kll~~~~~ 320 (406) T protein:vir:97 244 YTPLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGVNSPNQS---VAQLMEDYVTNDLPFYFDAITSELGLKTLNDKDR 320 (406) T ss_pred EEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCCCCCcch---HHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhhc Confidence 6655311 1222333445578889999999999985444322 22223346554 4555566777777666532211 Q ss_pred CccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccc Q lcl|Aclame:pro 393 ADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETT 472 (533) Q Consensus 393 t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~ 472 (533) ..+.+.|.-+ .+++.|++.+..+ -+..-||.+|.-. ..+..++.. +.-|+-.. T Consensus 321 --~~~~i~fd~~---------~~~~~~~~~~~~~----------~~~g~~T~NE~R~-----~~g~~p~~~-~~gD~~~~ 373 (406) T protein:vir:97 321 --RLYHIEFDTR---------SVTGRNVDEIVKL----------VNNQILTPNQGLV-----ELGKQKSTD-PNMDRYQS 373 (406) T ss_pred --cceeEEEecC---------ccchhhHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCCCC-CCCCeEee Confidence 1223444322 2344554444332 1223466533211 122222211 11121111 Q ss_pred hhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccC Q lcl|Aclame:pro 473 PADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFE 514 (533) Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (533) + .-..|++... +-+-+. ...+.||+-|-.+..+ T Consensus 374 ~-----~n~~~~~~~~---~~~~~~-~~~~~gg~~~~~~~~~ 406 (406) T protein:vir:97 374 S-----LNYVFLDKKE---EYQDKV-GIKGKGGEVNAEEDKS 406 (406) T ss_pred c-----cCccchhccc---cccccc-ccccCCCCCCCCCCCC Confidence 1 1111111110 001111 1123344422222222 No 75 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=99.42 E-value=1.5e-11 Score=79.99 Aligned_cols=391 Identities=14% Similarity=0.123 Sum_probs=193.0 Q ss_pred hcccccccCcccCCC-----CcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeec Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGG-----SSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIP 94 (533) Q Consensus 20 ~~~~~s~~~p~~~~g-----as~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~ 94 (533) |++.--++..++.-. .+.... .++.... ...+.+...+ .+.++|-|.+||+.|++.+-.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~v~~~----------~~~~~~~V~~ci~~Ia~~ia~l 65 (409) T protein:vir:93 1 MAKENIVTRIKKKLIDNWIDQSTSKL--YDFSPWK---NRSFWGVINN----------TLETNETIFSAITKLSNSMASL 65 (409) T ss_pred CCccchhhhhhhhhhhhhhccccccc--ccccccc---Cccccccchh----------hhhccHHHHHHHHHHHHhhhhC Confidence 222222221111100 011111 1111111 1111122111 2346799999999999775422 Q ss_pred CCCCceeeeecccccccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceee Q lcl|Aclame:pro 95 NENGNIVDVVTKDIELAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFS 166 (533) Q Consensus 95 d~~~~~v~v~l~~~e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik 166 (533) |+.+--+ .+..+ ..+..+| .-....+.++..++++|+.|..++.+. .+-+.+|.+|+|.+|+ T Consensus 66 -----p~~~~~~-~~~~~---~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-~G~~~~L~~l~~~~v~ 135 (409) T protein:vir:93 66 -----PLKMYED-YKVVN---TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI-YHQPSKLFLLNPDVVE 135 (409) T ss_pred -----ceeEeec-ccccc---chHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECC-CCcEEEEEEEcCceeE Confidence 2222111 11111 1233333 334567888999999999998887763 3458899999999999 Q ss_pred EEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 167 KRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSV 246 (533) Q Consensus 167 ~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAP 246 (533) +.++..+...+|.++.. .+....+++++|+|+......+ +-+|+|-|..|.+.+.....++..- +.... ++ T Consensus 136 ~~~~~~~~~~~y~~~~~------~g~~~~~~~~eVih~r~~~~~~-~~~G~s~i~~~~~~i~~~~~~~~~~-~~~~~-~~ 206 (409) T protein:vir:93 136 MLIENQSRELYYSIHAA------TGNKLIVHNMDMLHFKHIVASN-MVQGISPIDVLKNTTDFDNAVRTFN-LTEMQ-KP 206 (409) T ss_pred EEEeCCCcEEEEEEEcC------CceEEEEccccEEEeCCCCCCC-ccccccHHHHHHHHHHHHHHHHHHH-HHhcC-CC Confidence 99988887777766433 2344568899999997432222 3489998888877777665555542 22222 22 Q ss_pred cceeeecCCC-CCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC--C Q lcl|Aclame:pro 247 DRRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--K 323 (533) Q Consensus 247 eRr~fyidvG-nlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--n 323 (533) . .+.+-.+ ++-+.+.+...+.+.+.+ .+ .|.+. .+ ..|.+++.|.=. . T Consensus 207 ~--~~i~~~~~~l~~e~~~~~~~~~~~~~------~~-~g~~~----------vl----------~~g~~~~~l~~~~~d 257 (409) T protein:vir:93 207 D--SFMLKYGSNVGKEKRQQVLEDFKQYY------EE-NGGIL----------FQ----------EPGVEIEPLPKKYVS 257 (409) T ss_pred C--ceEEecCCCCCHHHHHHHHHHHHHHh------hc-CCCee----------ec----------CCCceEEEcCCChhH Confidence 2 2334343 455555544444443333 22 23221 11 125666666311 1 Q ss_pred CChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCccceeEEec Q lcl|Aclame:pro 324 VDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFRLVMN 402 (533) Q Consensus 324 lg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~eew~~~f~ 402 (533) +.-++-.+|....+.++++||...|+..++... +.+....+.|..+ |.-+-..+.+.|.+.|+....... ...|.|. T Consensus 258 ~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~~-sn~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~-~~~~~fd 335 (409) T protein:vir:93 258 EDIVASENLTRERVANVFQLPSVFLNARSNTNF-AKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREK-NRYFKFN 335 (409) T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccC-cceEEee Confidence 222344557788999999999999986443322 2233333446665 566667777888887775443322 2345555 Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhh-hHHHHHHhhhcccCCCCCcccccccchhhhcCccC Q lcl|Aclame:pro 403 RSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDL-KPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERG 481 (533) Q Consensus 403 ~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~-~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (533) .+ .+.... ++.|.+++..+- +..-||..+ .+. ++- +|-++-|+=..+ ... T Consensus 336 ~~----~ll~~d-~~~~~~~~~~~~----------~~G~~T~NE~R~~------~g~---~p~~ggD~~~~~-----~n~ 386 (409) T protein:vir:93 336 VK----SYLRAD-SATQAEVYFKAV----------RSGYYTINDIREW------EDL---PPVEGGDKPLIS-----GDL 386 (409) T ss_pred ch----hhhccC-HHHHHHHHHHHH----------hCCCcCHHHHHHH------hCC---CCCCCcCeeeec-----ccc Confidence 33 333222 345555554421 334566433 222 222 222222211111 111 Q ss_pred CcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcC Q lcl|Aclame:pro 482 SPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETG 521 (533) Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 521 (533) .|+..+.... ....||+-|- ++ | T Consensus 387 ~~~~~~~~~~--------~~~~gG~~n~----~e-----~ 409 (409) T protein:vir:93 387 YPIDTPLELR--------KSLKGGDKNV----NE-----S 409 (409) T ss_pred cccccchhhc--------ccccCCCCCc----CC-----C Confidence 2222221110 0111222111 00 0 No 76 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=99.41 E-value=4.3e-12 Score=82.91 Aligned_cols=404 Identities=11% Similarity=0.082 Sum_probs=196.5 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) |---|. -=+......+.+++.|+-. .....++.+.+...+.. +.+..+|..-+. +.+.++|-| T Consensus 1 ~~~~~~---~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~--------~~al~~~~v 63 (424) T protein:vir:18 1 MEEPKY---TIDLRTNNGWWARLQSWFV--GGRLVTPNQGSQTGPVS----AHGHLGDSSIND--------ERILQISTV 63 (424) T ss_pred CCCCcc---eEeecCCCchHHHHHhhhc--ccccccccccccccccc----cccccccccccH--------HHhhccHHH Confidence 100000 0000001111222222110 11111112222122211 222233332221 233467899 Q ss_pred HHHHHHhhceeee-------cCCCCceeeeecccccccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEE Q lcl|Aclame:pro 81 STVLDIIADECTI-------PNENGNIVDVVTKDIELAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHI 145 (533) Q Consensus 81 ~~AId~Ivneaiv-------~d~~~~~v~v~l~~~e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~k 145 (533) ..||+.|++.+=. .+.++....+..+ ..+.++| .-....+..+..++..|+.|..+ T Consensus 64 ~~cv~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~---------~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i 134 (424) T protein:vir:18 64 WRCVSLISTLTACLPLDVFETDQNDNRKKVDLS---------NPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALV 134 (424) T ss_pred HHHHHHHHHhhccCceEEEEeecCCceeeeccc---------cHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEE Confidence 9999999977321 1222222222222 1233333 23446777888999999999988 Q ss_pred eecCCCCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHH Q lcl|Aclame:pro 146 LEKGSDGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARA 225 (533) Q Consensus 146 iid~~k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik 225 (533) +.+. .+-+.+|.+|+|.+|++..+ ++..+|.|.. ++....+++++|+|+.+...++ -+|+|-|+.|++ T Consensus 135 ~r~~-~G~~~~L~pl~~~~V~v~~~--~~~~~y~~~~-------~g~~~~~~~~eIih~r~~~~dg--~~G~spi~~~~~ 202 (424) T protein:vir:18 135 DRNS-AGDVISLLPLQSANMDVKLV--GKKVVYRYQR-------DSEYADFSQKEIFHLKGFGFTG--LVGLSPIAFACK 202 (424) T ss_pred EECC-CCcEEEEEEecCcceEEEEc--CCeEEEEEEe-------CCeEEEeccccEEEecCcCCCC--cccccHHHHHHH Confidence 7653 34588999999999987654 4556666643 2334568899999998655544 489999999999 Q ss_pred HHHHHHHHHHHH-HHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhh Q lcl|Aclame:pro 226 IWNQLRLMEDAL-MLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYF 304 (533) Q Consensus 226 ~~NqLrm~Edal-VIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDyw 304 (533) .+.....+++.. -.++-.-.| +-++..+-+.+.+..+++ +++.++++.. -.+.|.+ + .|+ T Consensus 203 ~i~~~~a~~~~~~~~f~ng~~p-~gil~~~~~~l~~e~~~~-~~~~~~~~~~----g~nag~~---------~-vl~--- 263 (424) T protein:vir:18 203 SAGVAVAMEDQQRDFFANGAKS-PQILSTGEKVLTEQQRSQ-VEENFKEIAG----GPVKKRL---------W-ILE--- 263 (424) T ss_pred HHHHHHHHHHHHHHHHHccCCc-ceEEEeCCcCCCHHHHHH-HHHHHHHHhC----CcccCCc---------e-ecc--- Confidence 998888888743 333322222 334444433355444333 3333333210 0112222 1 121 Q ss_pred cccccCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCcc-chhhhhHHHHHHHHH-HHHHHHHHHH Q lcl|Aclame:pro 305 IPRRGDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVN-AKNTLATQDIKFNNT-IKRIQGFFVE 380 (533) Q Consensus 305 lprR~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~g-r~~eI~rde~kF~kf-I~rLr~~F~~ 380 (533) .|++++.|.=. .+.-++-.+|..+.+.+++|||...|+..++.. .++.+....+.|.++ |.-+-+++.+ T Consensus 264 -------~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f~~~tl~P~~~~ie~ 336 (424) T protein:vir:18 264 -------AGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGFLQYTLQPYISRWEN 336 (424) T ss_pred -------CCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHH Confidence 25666666311 222344567888999999999999997544322 223444555667665 4666677888 Q ss_pred HHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccC Q lcl|Aclame:pro 381 ELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGG 460 (533) Q Consensus 381 ~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~ 460 (533) .|.+.|+..... ..+.+.|..+.. .. .-.+.|.+++..+ -+..-||..|+-. .++-.+ T Consensus 337 ~l~~~L~~~~~~--~~~~~~fd~~~l----lr-~d~~~r~~~~~~~----------~~~G~~T~NE~R~-----~~gl~p 394 (424) T protein:vir:18 337 SIQRWLIPAKDV--GRIHAEHNLDGL----LR-GDSASRAAFMKAM----------GEAGLRTINEMRR-----TDNLPP 394 (424) T ss_pred HHHhhcCCcccc--CCeEEEEechhh----hc-cCHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCC Confidence 888777654322 234566665543 11 1234555555543 1334567433221 122222 Q ss_pred CCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcc Q lcl|Aclame:pro 461 LFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGA 512 (533) Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (533) + ++-|+-..+ ....|+ .+.|........| | T Consensus 395 i---~gGD~~~~~-----~n~~~l--------~~~~~~~~p~~~g------a 424 (424) T protein:vir:18 395 L---PGGDVAMRQ-----SQYVPI--------TDLGTNKEPRNNG------A 424 (424) T ss_pred C---CCcCeeeec-----cCccch--------HhhhccCCCccCC------C Confidence 2 111110000 000010 1111111111111 1 No 77 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=99.40 E-value=2.4e-11 Score=78.81 Aligned_cols=403 Identities=15% Similarity=0.161 Sum_probs=193.7 Q ss_pred CCC---cchhhhhhhHHHHHHhhcccccc-cCcc---cCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHH Q lcl|Aclame:pro 1 MPS---LEKYKKLNEAVNFTNFLSPMYGM-GAPH---GAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRM 73 (533) Q Consensus 1 ~~~---~~~w~k~de~~~~~~~~~~~~s~-~~p~---~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m 73 (533) ||- +-+|-+ +-+| +.|+ ...+.+..+.+.. ...........|..-| .+. T Consensus 1 ~~~~~~~g~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~v~--------~~~ 56 (432) T protein:vir:97 1 MPDEKKLGLLGQ-------------LKAMFVPPDPVDIGGGQTFTPVNAT---ARDLGIIISDTGAAVN--------ADA 56 (432) T ss_pred CCCcccCchhhh-------------hHhhcCCccccccccccccccCchh---hhhhcccccccCcccc--------hHh Confidence 432 333322 1122 1222 1233343443311 1000001111122112 123 Q ss_pred hhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHH-HHHHHHHh--------hhHHHHHHHHHHHhhcCceeEE Q lcl|Aclame:pro 74 DYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAI-LSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLH 144 (533) Q Consensus 74 ~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si-~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~ 144 (533) +.++|-|..||+.|++.+=.. |+.|-.++.+-...+ -.-+.++| .-....+.++..++++|+.|.. T Consensus 57 a~~~~aV~~~v~~Ia~~ia~l-----p~~~y~~~~~g~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~ 131 (432) T protein:vir:97 57 IMRLDAVAACVKLVSQAVAAM-----PLMMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVR 131 (432) T ss_pred hhcchHHHHHHHHHHHhhccC-----ceEEEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEE Confidence 446799999999999764322 222221111111111 11233443 2345677788899999999988 Q ss_pred EeecCCCCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHH Q lcl|Aclame:pro 145 ILEKGSDGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESAR 224 (533) Q Consensus 145 kiid~~k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Ai 224 (533) ++.+ .+.+.+|.+|+|.+|++..+..|...|..+ .. .+....+++++|+|+.+..+++ -+|+|.|..|. T Consensus 132 ~~~~--~g~~~~L~~l~p~~v~v~~~~~g~~~y~~~-~~------~g~~~~~~~~~iih~r~~~~dg--~~G~spi~~~~ 200 (432) T protein:vir:97 132 KVVT--DGRIESLQYLANDRLTITTDTKGNTAYRYR-RT------DGQMIDIPRQQIWKIMGYSLDG--ENGLSAIRYGA 200 (432) T ss_pred EEec--CCcEEEEEEEcCcceEEEEcCCCcEEEEEE-ec------CceEEEEccccEEEecCcCCCC--cccccHHHHHH Confidence 7775 356899999999999999998887554432 21 2344568899999997544443 48999999999 Q ss_pred HHHHHHHHHHHHH-HHHHHhccccceeeecCCC-CCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhh Q lcl|Aclame:pro 225 AIWNQLRLMEDAL-MLYRVVRSVDRRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKD 302 (533) Q Consensus 225 k~~NqLrm~Edal-VIyRi~RAPeRr~fyidvG-nlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleD 302 (533) +.+.....+++.. -.|+ ---+.-..+.+- .+-+.+. +.+..+|.. ..+.|.+. +|+ T Consensus 201 ~~i~~~~a~~~~~~~~f~---ng~~~~gil~~~~~l~~e~~----~~~~~~~~~----~~nag~~~----------vl~- 258 (432) T protein:vir:97 201 QIFGTAIAAEAQAARAFR---NGQLQSVYYQIDRFLTDDQY----DSFSKKVSG----SVEAGRAP----------LLE- 258 (432) T ss_pred HHHHHHHHHHHHHHHHHh---ccCCcceeEecCCCCCHHHH----HHHHHHHhh----hhcCCCce----------ecC- Confidence 9998877777633 3333 222333444443 3332222 223333321 11123221 121 Q ss_pred hhcccccCCCcceeeecCC--CCCChHHHHHHHHHHHHHhcCCCeeeccCCCC--ccchhhhhHHHHHHHH-HHHHHHHH Q lcl|Aclame:pro 303 YFIPRRGDRRAVEIDILQG--SKVDLAEDVEYMLNRLISALKVPKAFIGYEGD--VNAKNTLATQDIKFNN-TIKRIQGF 377 (533) Q Consensus 303 ywlprR~g~~gtEi~TLpG--~nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~--~gr~~eI~rde~kF~k-fI~rLr~~ 377 (533) .|.+++.|.= ..+.-++-.+|....+.+++|||...|+.... ++.++.+.-..+.|.+ -|.-+-++ T Consensus 259 ---------~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~~s~~e~~~~~f~~~tl~P~~~~ 329 (432) T protein:vir:97 259 ---------GGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGFLTMTLSPWLRR 329 (432) T ss_pred ---------CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccccchhHHHHHHHHHHHHHHHHHHH Confidence 2445555521 12222344678899999999999999986442 3344556555566765 34555566 Q ss_pred HHHHHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhc Q lcl|Aclame:pro 378 FVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAG 457 (533) Q Consensus 378 F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~ 457 (533) +.+.|.+.|+....- ....+.|..+.. ... -.+.|.+++..+ -+..-||..|.-. .++ T Consensus 330 ie~~ln~kLl~~~e~--~~~~~~fd~~~l----lr~-d~~~r~~~~~~~----------~~~G~~T~NE~R~-----~~g 387 (432) T protein:vir:97 330 IEQSIALNLLTPAER--RRYFADFDTSAL----LRA-DSAARSSYYSQL----------VNNGLMTRDEARE-----IEG 387 (432) T ss_pred HHHHHhhhccCcccc--CceEEEeechhh----hcc-CHHHHHHHHHHH----------HhCCCCCHHHHHH-----HhC Confidence 777777776643211 122355543322 222 234455555542 1223466533321 122 Q ss_pred ccCCCCCccccccc------chhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhc Q lcl|Aclame:pro 458 GGGLFDTGGFGEET------TPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEET 520 (533) Q Consensus 458 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (533) ++|-++.+... .|....+..+.| ++ .+|+ ...++. +.+- T Consensus 388 ---lpp~~g~~~~~~~~~~~~pl~~~~~~~~~--------------~~---~~~~---~~~~~~-~~~~ 432 (432) T protein:vir:97 388 ---LPKLGGNAAVLTVQSAMVPLDSIGLQASP--------------EP---ASGL---GNQQQD-KVSK 432 (432) T ss_pred ---CCCCCCCcceEeecccccchhhhcccCCC--------------CC---CCCC---CCcccc-cccC Confidence 22211111110 111111111111 00 0110 000000 0000 No 78 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=99.39 E-value=8e-12 Score=81.42 Aligned_cols=423 Identities=12% Similarity=-0.007 Sum_probs=195.4 Q ss_pred CcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHH Q lcl|Aclame:pro 35 SSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAI 114 (533) Q Consensus 35 as~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si 114 (533) -|.+|.. .++..+.++..+.+.. .+. +.+.|-|..+|+.|++.+-. .|+.+.-.+-+... T Consensus 1 ~~~~~~~---~g~~~~~~~~~~~~~~------~~~----~~~~~~V~acV~~Ia~~iA~-----lpl~l~~~~~~~~~-- 60 (723) T protein:vir:94 1 MTTFPSG---AGGWNAWSADSVFGNG------AKG----WSNSAVAYRCISMLANNAAS-----VDLVVRGPDGELDE-- 60 (723) T ss_pred CcccccC---CCcccccccccccccc------HHH----HhhhHHHHHHHHHHHHhhcc-----ceeEEEcCCCccch-- Confidence 2333321 1111111111111211 111 23568999999999876421 22222212111111 Q ss_pred HHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecC--CCCCeeeeEEcCcceeeEEeeccCcEEEEEecccc Q lcl|Aclame:pro 115 LSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKG--SDGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVY 184 (533) Q Consensus 115 ~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~--~k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~ 184 (533) ...+..+|+ -....+.++..++..|+.|..++.+. ..+-+.+|..|+|+.+.++....++.++..+...+ T Consensus 61 ~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~~~~~~~~~~~y 140 (723) T protein:vir:94 61 LHPLSQLWNVMPNRAMPAQVLKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAADAVPQAQIIGY 140 (723) T ss_pred hhHHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCCccceeeeeeEE Confidence 123445543 34466778888999999999988753 23447789999998887776666554443333223 Q ss_pred eecccCCcccccCcccEEEEecCc-ccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhH Q lcl|Aclame:pro 185 RNVVSGYFNEDIPEEDVIHFSHKI-DTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKI 263 (533) Q Consensus 185 ~~~~~~~~~~~~~~~dvi~~~~~~-~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kA 263 (533) .+....+....+++++|||+.... +++ -+|+|-|..|.+.+.....+++... +..+---+.-..+.++++-+... T Consensus 141 ~~~~~~G~~~~~~~~dIiHir~~~~~dg--~~G~Spi~~a~~~i~~~~aa~~~~~--~~f~NG~~p~giL~~~~l~~e~~ 216 (723) T protein:vir:94 141 VIERTDGVRVPVLADEMLWLRFSDPYDP--LAVMAPWKAARAAVDADFYAATWQR--QSFKNGARPGGVVNLGDMDEQTF 216 (723) T ss_pred EEEecCceeEEecccceEEecCCCCCCC--cccccHHHHHHHHHHHHHHHHHHHH--HHHhcCCCcceEEEcCCCCHHHH Confidence 222233445667889999997543 443 3899999999999998888877332 33332234444455566655555 Q ss_pred HHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChH---HHHHHHHHHHHHh Q lcl|Aclame:pro 264 NEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLA---EDVEYMLNRLISA 340 (533) Q Consensus 264 eqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i---~Dv~Yf~~kLy~a 340 (533) ++..+.+...|. -..+.|++........ -+.. .+.|++++.|.= +..++ +=-+|-...+-++ T Consensus 217 ~~~~~~~~~~~~----G~~Nagk~~vL~g~~~-------~~~v---l~~G~~~~~l~~-s~~D~q~le~r~~~~~eIa~a 281 (723) T protein:vir:94 217 TKTVAAFRSQVE----GVQNAGRHLLIAGQGS-------DGGA---AGKGATFTSLSM-SPAEMDYINSRMHSAEEVMLA 281 (723) T ss_pred HHHHHHHHHHhh----chhhcCcceeeccccc-------cccc---ccCCceEEEccC-CHHHHHHHHHHHHhHHHHHHH Confidence 554444444432 1222333221111000 0000 123556665521 22222 2234556679999 Q ss_pred cCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHH Q lcl|Aclame:pro 341 LKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQR 419 (533) Q Consensus 341 L~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R 419 (533) .+||...|+....+++ +.-..+.|.. -|.-+..++.+.|...|+..- ...+.|+|....... . =++.| T Consensus 282 fgVPp~~i~~~st~sN---~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~---g~~~~~~f~~~~lLr--~---D~~~r 350 (723) T protein:vir:94 282 FGIRKDALLGGSTYEN---QAEAKAAVWTETLIPQMEVMASITDLQLLPDI---GWTVEWDFNSVPALQ--E---DLEAQ 350 (723) T ss_pred hCCChhHcCCCCCccc---HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc---cCceEEeecchhhhh--c---CHHHH Confidence 9999988875443333 3333344543 466666778888888876321 112345554332211 1 11233 Q ss_pred HHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCccccccc--chhhhcCccCCcccccCCCcccccCC Q lcl|Aclame:pro 420 IGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEET--TPADFLGERGSPIESPRGRTEFDFGT 497 (533) Q Consensus 420 ~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (533) .+.+..+ -+..-||.+|.-. .++-.++ ++-++++ .|. ....++.|...|... T Consensus 351 ~~~~~~~----------v~~G~~T~NE~R~-----~lglpPi---~gGd~~~~~~p~-~~~~a~~~~~~p~~~------- 404 (723) T protein:vir:94 351 AGRNQGY----------LVNDVLMVDEVRA-----TIGLDPL---PGGIGQMTLTPY-RAQFAPAPAPAPAVE------- 404 (723) T ss_pred HHHHHHH----------HhCCCcCHHHHHH-----HhCCCCC---CCCcccceeccc-cccccCCCCCCccch------- Confidence 3333321 1234566533211 1233333 2222222 111 111111110111100 Q ss_pred CCCccCCCccCcCcccCCchhhcCCccc-----CCCCCCCC Q lcl|Aclame:pro 498 EGGEELGGELNLGGAFEEFEEETGGGEE-----ELPFPEEE 533 (533) Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~ 533 (533) ++....-..+....+..++++..+-+.. ..|.|.++ T Consensus 405 e~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 445 (723) T protein:vir:94 405 EGAARMLALLERVAADRPLPELPVRATTVLHHDPGPDPQQT 445 (723) T ss_pred hhhHhhhhhccccccccCcCCCCCCCCCCCCCCcccCCchh Confidence 0000000000111222333332222211 12333333 No 79 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=99.39 E-value=3.3e-11 Score=78.05 Aligned_cols=403 Identities=14% Similarity=0.130 Sum_probs=198.7 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~A 83 (533) |.|..|.. ..+.+++++..=.. ... .. ....+... .+..+.+.. ...+.+.|-|.+| T Consensus 1 m~~~~~~~---~~~~~~~~~~~~~~---~~~--~~--~~~~~~~~---~~~~~~~v~----------~~~a~~~~~v~~~ 57 (412) T protein:vir:26 1 MNVIAKEN---IVTRIKKKLIDNWI---DQS--TS--KLYDFSPW---KNRSFWGVI----------NNTLETNETIFSA 57 (412) T ss_pred Cccchhhh---hhhhhhhhHhhhhh---ccc--cc--cccccccc---CCccccccc----------hhhhhccHHHHHH Confidence 45554411 12233322211000 000 00 00111111 111111221 1134467999999 Q ss_pred HHHhhceeeecCCCCceeeeecccccccHHHHHHHHH-----HhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeE Q lcl|Aclame:pro 84 LDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDY-----VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQ 158 (533) Q Consensus 84 Id~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~-----ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr 158 (533) |+.|++.+-.. |+.+--+ .+..+.-...++. .+.-....+.++..++++|+.|..++.+. .+-+.+|. T Consensus 58 i~~ia~~iA~l-----p~~~~~~-~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-~G~~~~L~ 130 (412) T protein:vir:26 58 ITKLSNSMASL-----PLKMYED-YKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI-YHQPSKLF 130 (412) T ss_pred HHHHHHhHhhC-----ceeEeec-cccccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECC-CCcEEEEE Confidence 99999875533 2222111 1112211112221 12334567888999999999999887764 35588999 Q ss_pred EcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 VVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALM 238 (533) Q Consensus 159 ~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalV 238 (533) .|+|.+|.+.++..+...+|.|+.. .+....+++++|+|+.+....+ +-+|+|-|..|.+.......+++. . T Consensus 131 ~l~~~~v~v~~~~~~~~~~y~~~~~------~g~~~~~~~~evih~~~~~~~~-~~~G~s~i~~~~~~i~~~~a~~~~-~ 202 (412) T protein:vir:26 131 LLNPDVVEMLIENQSRELYYSIHAA------TGNKLIVHNMDMLHFKHIVASN-MVQGISPIDVLKNTTDFDNAVRTF-N 202 (412) T ss_pred EEcCceeEEEEeCCCcEEEEEEEcC------CceEEEEccccEEEeCCCCCCC-CcccccHHHHHHHHHHHHHHHHHH-H Confidence 9999999999998887777766443 2345568899999997533322 348999888888777766666654 2 Q ss_pred HHHHhccccceeeecCCC-CCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceee Q lcl|Aclame:pro 239 LYRVVRSVDRRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEID 317 (533) Q Consensus 239 IyRi~RAPeRr~fyidvG-nlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~ 317 (533) ++.-.+.| .+.+-.+ ++-+.+++...+.+.+.+ .+ .|.+. .+ ..|.+++ T Consensus 203 ~~~~~~~~---~~i~~~~~~l~~e~~~~~~~~~~~~~------~~-~g~~~----------vl----------~~g~~~~ 252 (412) T protein:vir:26 203 LTEMQKPD---SFMLKYGSNVGKEKRQQVLEDFKQYY------EE-NGGIL----------FQ----------EPGVEIE 252 (412) T ss_pred HHhcCCCC---ceEEecCCCCCHHHHHHHHHHHHHHh------hc-CCCee----------ec----------CCCceEE Confidence 33333332 2333333 565555555555544333 22 23321 11 1356666 Q ss_pred ecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCc Q lcl|Aclame:pro 318 ILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFAD 394 (533) Q Consensus 318 TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~ 394 (533) .|.-. .+.-++-.+|-...+.+++|||...|+..++... +.+...-..|.++ |.-+..++.+.|...|+....... T Consensus 253 ~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~-sn~e~~~~~f~~~~l~P~~~~ie~~ln~kLl~~~~~~~ 331 (412) T protein:vir:26 253 PLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNF-AKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREK 331 (412) T ss_pred EcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccC Confidence 66321 1222333456778999999999999986443222 2222233346665 677777888888888775442221 Q ss_pred cceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchh Q lcl|Aclame:pro 395 QDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPA 474 (533) Q Consensus 395 eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~ 474 (533) . ..|.|..+. +.... +++|.+.+..+- +..-||..|.-.. ++ ++|-++-|+=..+ T Consensus 332 ~-~~~~fd~~~----l~~~d-~~~~~~~~~~~~----------~~G~~t~NE~R~~-----~g---l~p~~ggD~~~~~- 386 (412) T protein:vir:26 332 N-RYFKFNVKS----YLRAD-SATQAEVYFKAV----------RSGYYTINDIREW-----ED---LPPVEGGDKPLIS- 386 (412) T ss_pred c-ceEEeechh----hhccC-HHHHHHHHHHHH----------hCCCcCHHHHHHH-----hC---CCCCCCcCeeeec- Confidence 1 124554332 22222 344555544321 2344665332111 22 2222222221111 Q ss_pred hhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcC Q lcl|Aclame:pro 475 DFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETG 521 (533) Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 521 (533) .-..|++.|... + ....||+-|- ++ | T Consensus 387 ----~n~~~~~~~~~~---~-----~~~~gG~~n~----~e-----~ 412 (412) T protein:vir:26 387 ----GDLYPIDTPLEL---R-----KSLKGGDKNV----NE-----S 412 (412) T ss_pred ----ccccccccchhh---c-----ccccCCCCCc----CC-----C Confidence 111223222111 0 0112222111 00 0 No 80 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=99.39 E-value=1e-11 Score=80.87 Aligned_cols=406 Identities=11% Similarity=0.014 Sum_probs=196.9 Q ss_pred cccccCc-ccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCcee Q lcl|Aclame:pro 23 MYGMGAP-HGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNIV 101 (533) Q Consensus 23 ~~s~~~p-~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v 101 (533) || |+.+ +..-|. . .+..++..+..+++.. ......+.. ..+.++|-|.+||+.|++.+=. .|+ T Consensus 1 m~-~~~~~~~~~~~--~-----~~~~~~~~~~~~g~~~-s~~~~~v~~--~~al~~~~v~~cv~~ia~~ia~-----lp~ 64 (419) T protein:vir:80 1 MF-FSRQLLSNLGQ--T-----QPGSGGWVSALLGSAR-SEAGQVVTP--ASALSLTVLQNCVTLLAESIAQ-----LPV 64 (419) T ss_pred CC-cccccccccCc--C-----CCCcchhhHHhhcccc-cccCcccCh--HHhhccHHHHHHHHHHHHhhcc-----Cce Confidence 33 2211 111111 1 1111111111111100 000001111 1244689999999999987432 233 Q ss_pred eeecccccccHHHH-HHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeecc Q lcl|Aclame:pro 102 DVVTKDIELAKAIL-SYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPE 172 (533) Q Consensus 102 ~v~l~~~e~s~si~-~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~ 172 (533) .+--++.+-...++ ..+..+|+ -....+.++..+++.|+.|..++.+. .+-+.+|.+|+|.+|++..+.. T Consensus 65 ~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~-~G~~~~L~~i~~~~v~i~~~~~ 143 (419) T protein:vir:80 65 ELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ-DGVIQGLYPLDNEAVTVMKGPD 143 (419) T ss_pred EEEEecCCCcccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECC-CCcEEEEEEecCceEEEEECCC Confidence 22211111111111 12333332 34567888889999999999887764 3458899999999999998887 Q ss_pred CcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeee Q lcl|Aclame:pro 173 TDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFY 252 (533) Q Consensus 173 g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fy 252 (533) +...|++. + ...+++++|+|+.+...++ -+|+|-|+.|...+.....+++...-+---.+-.+-++. T Consensus 144 ~~~~y~~~-------~----~~~~~~~~i~h~~~~~~d~--~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~ 210 (419) T protein:vir:80 144 LKPMYRVA-------G----ADPLPQRLVHHVRWMSING--YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIE 210 (419) T ss_pred ceEEEEEc-------C----ccccchhheEEecCCCCCC--cccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEE Confidence 75444321 1 1236788999998754443 589999999999999988888755433333343444555 Q ss_pred cCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC--CCChHHHH Q lcl|Aclame:pro 253 VDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--KVDLAEDV 330 (533) Q Consensus 253 idvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--nlg~i~Dv 330 (533) ++. .++..+.++-.+.+...+.+..--..+.|.+. ++ ..|.+++-|.-. .+.-++-. T Consensus 211 ~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~----------vl----------~~g~~~~~l~~s~~d~q~~e~~ 269 (419) T protein:vir:80 211 RPT-DAPALKDQASVDRITDGWNAKFGGSGNAKKVA----------LL----------QEGMKFKPLSMTNVDAALIDAL 269 (419) T ss_pred ecC-CCCcccCHHHHHHHHHHHHHHhcCccccCCce----------ec----------CCCceEEeccCChhhHHHHHHH Confidence 443 22222223333444444433322222233321 12 124566655321 22334446 Q ss_pred HHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcHHHH Q lcl|Aclame:pro 331 EYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVE 409 (533) Q Consensus 331 ~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E 409 (533) ++..+.+.+++|||...|+..++. ..+.+....+.|.++ |.-+...+.+.|.+.|+.+... ..+.+.|..+. T Consensus 270 ~~~~~~Ia~~fgVPp~llg~~~~~-t~~n~e~~~~~f~~~~l~P~~~~ie~~l~~kll~~~~~--~~~~i~fd~~~---- 342 (419) T protein:vir:80 270 RLSALDIARIYKIPAHMVNELERA-TFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSER--KQYFIEYNLAG---- 342 (419) T ss_pred HHHHHHHHHHhCCCHHHhcCCCCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccc--CCeEEEEechh---- Confidence 678899999999999999854332 223344445567665 5666677777888777654322 23445555433 Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCC Q lcl|Aclame:pro 410 GERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRG 489 (533) Q Consensus 410 ~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (533) +... -++.|++.+..+ -+..-||..+.- +.++..++. +-|+-..|. + .. +...| T Consensus 343 l~~~-d~~~~~~~~~~~----------~~~G~~T~NE~R-----~~~g~~p~~---gGD~~~~~~-n---~~-~~~~~-- 396 (419) T protein:vir:80 343 LLRG-DQSSRYAAYAVG----------RQWGWLSINDIR-----RLENMPPVK---GGDIYLSPM-N---MV-DASKP-- 396 (419) T ss_pred hhcc-CHHHHHHHHHHH----------HhCCCcCHHHHH-----HHhCCCCCC---Ccceeeecc-c---cc-ccccc-- Confidence 2221 234455554442 123446653322 123333331 222211111 0 00 00011 Q ss_pred CcccccCCCCCccCCCccCcCcccCCchhhcCCcccCCC Q lcl|Aclame:pro 490 RTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELP 528 (533) Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 528 (533) ...++|+ +++.+.....-.+.+- T Consensus 397 ----------~~~~~~~------~~~~~~~~~~~~~~l~ 419 (419) T protein:vir:80 397 ----------QPIPMGK------TEPTKAALDEIGRILS 419 (419) T ss_pred ----------ccccCCC------CCchhhhHHHHHhhcC Confidence 0011111 1111111111112222 No 81 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.38 E-value=1.3e-11 Score=80.19 Aligned_cols=432 Identities=10% Similarity=0.023 Sum_probs=206.0 Q ss_pred hhhhhHHHHHHhhcccccccCc----------ccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcC Q lcl|Aclame:pro 8 KKLNEAVNFTNFLSPMYGMGAP----------HGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTD 77 (533) Q Consensus 8 ~k~de~~~~~~~~~~~~s~~~p----------~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~ 77 (533) +. .+...-++.+++-|.+.| ...++++.-..+..-.. .+...+. -.-...+...|..+-|.++.++ T Consensus 1 ~~--r~~~~~~~~dr~i~~~~~~~~~~~~~~~~~y~aa~~~r~~~~w~~-~~~~~s~-~~~i~~~~~~lr~RaRdL~rNn 76 (505) T protein:vir:96 1 MK--RAEKKPSLAQRMVNWAWYRYVEPQKNAARAFEAARRDRLGKAWLR-RASRLSA-DEEIYADLASLVQRAREQSINN 76 (505) T ss_pred CC--CCccccchhhcccchhhhhhHHHHHHhhhhcccccCCCccccccC-CCCCCCh-HHHHHHHHHHHHHHHHHHHhcC Confidence 00 001111122222221111 12233332221110000 0000000 0011236778899999999999 Q ss_pred hhHHHHHHHhhceeeec-CCCCceeeeecc----cccccHHHHHHHH-----------HHhhhHHHHHHHHHHHhhcCce Q lcl|Aclame:pro 78 PLISTVLDIIADECTIP-NENGNIVDVVTK----DIELAKAILSYLD-----------YVINIEKNAYPIIRNMIKYGDM 141 (533) Q Consensus 78 PEV~~AId~Ivneaiv~-d~~~~~v~v~l~----~~e~s~si~~~i~-----------~ll~f~~~~~e~~R~wyvDGr~ 141 (533) |-+..||+.+++.+|.+ +..=. ..++-. +.++.+.|-..|. .+++|..-..-.+|.|++||.+ T Consensus 77 ~~a~~av~~~~~nvVG~~Gi~~~-~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~dGE~ 155 (505) T protein:vir:96 77 PYAKRFYQLLKNNVIGPKGMTFQ-SRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETLARDGEV 155 (505) T ss_pred hHHHHHHHHHHHHhcCCCcceee-ecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHHhhCCce Confidence 99999999999999964 33111 111212 2234444422222 2356777778899999999999 Q ss_pred eEEEeecCC-CCCeeeeEEcCcceeeEEe----------------eccCcE-EEEEec--ccceec---ccCCcccccCc Q lcl|Aclame:pro 142 FLHILEKGS-DGTIEKFQVVSPYIFSKRY----------------NPETDT-WYYVIT--DVYRNV---VSGYFNEDIPE 198 (533) Q Consensus 142 ~~~kiid~~-k~gI~elr~ldP~~ik~v~----------------d~~g~~-e~y~y~--~~~~~~---~~~~~~~~~~~ 198 (533) |..+...+. .-+. .|+.|+|..|.--. |..|.. .|+++. +++... ........++. T Consensus 156 f~~~~~~~~~~~~~-~lqliepd~l~~~~n~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~hPgd~~~~~~~~~~~~~rvpa 234 (505) T protein:vir:96 156 LVREHRGYPNKWGY-ALQILECDRLDLNYNADLQNGNRIRMSIELDAWERPVAYHLLVNHPGDNSYCYHYAGQTYERVPA 234 (505) T ss_pred EEEEeecCCCCcce-EEEEechhhcCCCCCcccCCcCeEEeceEECCCCceEEEEEeecCCCccccccccccccccccCH Confidence 887765421 1233 68999998873222 222332 455553 333222 22233445788 Q ss_pred ccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCC--CCCchhhHHHHHHHHHHHhhh Q lcl|Aclame:pro 199 EDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDV--GNVPPDKINEYLTNIAMQYKR 276 (533) Q Consensus 199 ~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidv--Gnlp~~kAeqy~~~im~~~kn 276 (533) ++|+|+-...--+ ...|+|.|+.+++.+++|...+||.++-...-| --+.+|.. +.+.... ...-+ T Consensus 235 ~~vlH~f~~~r~g-Q~RGis~lapvl~~l~~l~~y~dael~~a~i~A--~~a~fi~~~~~~~~~~~---------~~~~~ 302 (505) T protein:vir:96 235 DEIIHTFVPWRPH-QNRGIPWTHASMVELHHIGEYRKSEMIAAELGA--KKVGFYEQDPEAYDQPP---------EDDQG 302 (505) T ss_pred hHhhhhhcccCCc-cccCcchHHHHHHHHHHHhHHHHHHHHHHHHhh--hheeeeecCCccCCCcc---------ccccC Confidence 8999987543322 258999999999999999999999888887766 33333432 2221100 00001 Q ss_pred ceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC-CCChHHH-HHHHHHHHHHhcCCCeeeccCCCCc Q lcl|Aclame:pro 277 DYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAED-VEYMLNRLISALKVPKAFIGYEGDV 354 (533) Q Consensus 277 k~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~D-v~Yf~~kLy~aL~VP~srl~~~~~~ 354 (533) ..++.-.-|.|. + | .-|-+|+.+... .-+..++ ++-..+.+-.+||||-.-|..+-+- T Consensus 303 ~~~~~l~pG~i~--------------~-L-----~pGe~i~~~~~~~p~~~~~~f~~~~lr~iaaglgi~ye~lt~D~s~ 362 (505) T protein:vir:96 303 EIVEEVEAGTYQ--------------L-L-----PYGIRFKEHKIDHPHTNFGAFVKSSLRGVAAGMGPAYNRLAHDLEG 362 (505) T ss_pred ccccccCCceee--------------e-c-----CCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccccc Confidence 111111122211 0 0 124555555322 2233333 5666677889999999988754222 Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHH--------HhhhhhhccCCCcc-----ce-eEEec--CCcHHHHHHHHHHHHH Q lcl|Aclame:pro 355 NAKNTLATQDIKFNNTIKRIQGFFVEE--------LERMVRMNKEFADQ-----DF-RLVMN--RSNSIVEGERFAVIEQ 418 (533) Q Consensus 355 gr~~eI~rde~kF~kfI~rLr~~F~~~--------l~~qLilk~i~t~e-----ew-~~~f~--~dn~f~E~ke~ei~~~ 418 (533) .+=+.+.-..+.|-+.++++|..|..- +....++.|.+... .| ...|. .--+.-.+||+.-... T Consensus 363 ~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~ 442 (505) T protein:vir:96 363 VNFSSLRSGELDERDLYKLLQFFVVTELLERVAGNLISMSLLTQALPLNMVDIDRLSQYAFQPRGWDWVDPAKDSKAHSE 442 (505) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCccchhhceeeeccCCccccChHHHHHHHHH Confidence 222344445666999999999876532 23445788877532 22 23333 3334445666665555 Q ss_pred HHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCc----ccccCCCcccc Q lcl|Aclame:pro 419 RIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSP----IESPRGRTEFD 494 (533) Q Consensus 419 R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 494 (533) +++. ..-+..=+...-..=-++..+|.+. |.. ..++.|+..++ ...+..+++++ T Consensus 443 ~i~~-----G~~t~~~~~a~~G~D~~~v~~q~a~---e~~--------------~~~~~Gl~~~~~~~~~~~~~~~~~~~ 500 (505) T protein:vir:96 443 SIKN-----RTRSRSSIIRAAGDDPEDVFDEIAW---EEQ--------------LMRDKGVNPTPPEQESKDATTDEEDD 500 (505) T ss_pred HHHc-----CCCCHHHHHHHcCCCHHHHHHHHHH---HHH--------------HHHHcCCCCCCCCCCCCCCCCCCCCC Confidence 4432 1111111111111100122222211 110 01112221110 00111111111 Q ss_pred cCCCCCc Q lcl|Aclame:pro 495 FGTEGGE 501 (533) Q Consensus 495 ~~~~~~~ 501 (533) ... ++ T Consensus 501 ~~~--d~ 505 (505) T protein:vir:96 501 SAS--DD 505 (505) T ss_pred CCC--CC Confidence 110 00 No 82 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=99.38 E-value=1e-11 Score=80.84 Aligned_cols=417 Identities=9% Similarity=0.019 Sum_probs=206.6 Q ss_pred hcccccccCcccCCC-CcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhcee-----ee Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGG-SSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADEC-----TI 93 (533) Q Consensus 20 ~~~~~s~~~p~~~~g-as~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivnea-----iv 93 (533) |+.+.+=..++.... .+.++ .... .. +..+++.-.+-.... ...+...|.|.+||+.|++.+ .+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~-g~~~~~~~~~~~~~~---~~~a~~~~~v~~~v~~ia~~iA~lp~~v 70 (460) T protein:vir:10 1 MANRIIRALRELTGLDNKFND-----AFIK-YI-GQTFTKYDNNGKTYL---EQGYNINPDVYSCISQMAAKTVAVPYTI 70 (460) T ss_pred CchhHHHHHhhhhccCCCchH-----HHHH-hh-ccccCCCccchhhhh---HHHHhcchHHHHHHHHHHHhhhhCceEE Confidence 333333333332111 11111 0000 00 111122222211111 123446799999999999772 22 Q ss_pred cCCCCc--eeeeec--------------------ccccccHHHHHHHHH----HhhhHHHHHHHHHHHhhcCceeEEEee Q lcl|Aclame:pro 94 PNENGN--IVDVVT--------------------KDIELAKAILSYLDY----VINIEKNAYPIIRNMIKYGDMFLHILE 147 (533) Q Consensus 94 ~d~~~~--~v~v~l--------------------~~~e~s~si~~~i~~----ll~f~~~~~e~~R~wyvDGr~~~~kii 147 (533) +..... ...... ............++. .+......+..+..+++.|+.|..++. T Consensus 71 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r 150 (460) T protein:vir:10 71 KVVKDTKAYQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYFYLMS 150 (460) T ss_pred EeccCCccchhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEe Confidence 222211 111000 000000011111111 123456678888899999999998887 Q ss_pred cCC--CCC-eeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCccc----CcccccchhH Q lcl|Aclame:pro 148 KGS--DGT-IEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDT----NFFPYGRSYL 220 (533) Q Consensus 148 d~~--k~g-I~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~----d~~~~g~s~L 220 (533) +.. ..| +.+|.+|+|..|++..+..+...+|.|......-..++....+++++|||+.+.... ..+-+|+|.+ T Consensus 151 ~~~~~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~~~~~~G~sp~ 230 (460) T protein:vir:10 151 PDDGINAGVPSQMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLIQGDQFIEFNEDEVIHTKYANPNFDLQGSHLYGMSPI 230 (460) T ss_pred cCCCccCceeEEEEEEcCceEEEEEcCCCceeeeeeeeeEEEEecCceeEEecccceEEEecCCCCcccccCccccccHH Confidence 643 223 789999999999999998887666655433222223455678899999999754332 1234899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHH Q lcl|Aclame:pro 221 ESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESIL 300 (533) Q Consensus 221 ~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~sml 300 (533) ..|.+.+.....+++...-+--.-++.. .++..-+.+.+.++++..+.+...|... .+.|.+ + .+ T Consensus 231 ~~~~~~i~~~~~~~~~~~~~f~ng~~~~-~i~~~~~~l~~e~~~~~~~~~~~~~~g~----~n~g~~---------~-vl 295 (460) T protein:vir:10 231 RAILRNINSQNSTIDNNVKTMQNGGVFG-FIHGGSTGLTQPQADSLKQRLTEMDKSP----DRLSQI---------A-GA 295 (460) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcc-eeeecCCCCCHHHHHHHHHHHHHHhcCc----cccCCc---------e-ec Confidence 9999999888888886555443344433 3344344666655555555554444210 112322 1 11 Q ss_pred hhhhcccccCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCc-cchhhhhHHHHHHHHH-HHHHHH Q lcl|Aclame:pro 301 KDYFIPRRGDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDV-NAKNTLATQDIKFNNT-IKRIQG 376 (533) Q Consensus 301 eDywlprR~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~-gr~~eI~rde~kF~kf-I~rLr~ 376 (533) ..|.+++.|.-. .+.-++-.+|..+.+.+++|||...|+...+. ...+.+....+.|..+ |.-+.+ T Consensus 296 ----------~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l~P~~~ 365 (460) T protein:vir:10 296 ----------SGEIAFTKISLNTDELKPFDYLKYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNIQPDLV 365 (460) T ss_pred ----------CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHHHHHHH Confidence 135666666322 23334557788899999999999999864332 2233444445556664 666777 Q ss_pred HHHHHHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhh Q lcl|Aclame:pro 377 FFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAA 456 (533) Q Consensus 377 ~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E 456 (533) ++.+.|...|+.... ....+.+.|..+.. ..++.+...+.. ++ +..-||..|.-. .+ T Consensus 366 ~ie~~ln~kl~~~~~-~~~~~~i~~d~~~l-------~~l~~d~~~~~~---~~-------~~g~~T~NE~R~-----~~ 422 (460) T protein:vir:10 366 ILKQAFDKKFIKRFK-GYENAVIEWDISEL-------PEMQTDMVAMAS---WL-------NTIPVTPNEIRI-----AM 422 (460) T ss_pred HHHHHHHHhhcCccc-ccCCceEEeecchh-------hhHHHHHHHHHH---HH-------hCCCCCHHHHHH-----Hh Confidence 888888888765432 22345566643332 112222222221 11 234577543322 22 Q ss_pred cccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCc Q lcl|Aclame:pro 457 GGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGE 506 (533) Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (533) +-.++.. +.-|+-..|. -..|++.... ...++++.++. T Consensus 423 g~~pi~~-~~gD~~~~~~-----n~~~~~~~~~------~~~~~~~nq~~ 460 (460) T protein:vir:10 423 KYETLNQ-DGMDIVFMPS-----NKVRIDDVSN------NLIDSAFNQNQ 460 (460) T ss_pred CCCCCCC-CCCCeeeecc-----cccchhhccc------ccCCCcccCCC Confidence 2222221 1112111111 1111111100 00011111111 No 83 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=99.38 E-value=2.4e-11 Score=78.77 Aligned_cols=402 Identities=11% Similarity=0.077 Sum_probs=195.7 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) -|-. -=|..+..-+.+++-|+- ......++-..+...+. .+.++.+|..-|. + .+...|-| T Consensus 3 ~~~~-----~~~~~~~~g~~~~~~~~f--~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~-------~-~al~~~~v 63 (424) T protein:vir:18 3 EPKY-----TIDLRTNNGWWARLKSWF--VGGRLVTPNQGSQTGPV----SAHGYLGDSSIND-------E-RILQISTV 63 (424) T ss_pred CCcc-----ccccCCCCchHHHHHhhc--cccccccccchhhcccc----ccccccccccccH-------H-HhhccHHH Confidence 1100 001111122222222220 00011111111111111 1222333333232 1 23457899 Q ss_pred HHHHHHhhceeeec-------CCCCceeeeecccccccHHHHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEE Q lcl|Aclame:pro 81 STVLDIIADECTIP-------NENGNIVDVVTKDIELAKAILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHI 145 (533) Q Consensus 81 ~~AId~Ivneaiv~-------d~~~~~v~v~l~~~e~s~si~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~k 145 (533) .+||+.|++.+=.. +.++....+..+ ..+..+|+ -....+..+..++..|+.|..+ T Consensus 64 ~~cv~~Ia~~iA~lp~~vy~~~~~~~~~~~~~~---------~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i 134 (424) T protein:vir:18 64 WRCVSLISTLTACLPLDVFETDQNDNRKKVDLS---------NPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALV 134 (424) T ss_pred HHHHHHHHHhhccCceEEEEeccCCceeeeccc---------cHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEE Confidence 99999999874221 222222222222 12333332 2345677788999999999987 Q ss_pred eecCCCCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHH Q lcl|Aclame:pro 146 LEKGSDGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARA 225 (533) Q Consensus 146 iid~~k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik 225 (533) +-+. .+-+.+|.+|+|.+|.+..+ ++..+|.|... +....+++++|+|+.+..+++ -+|+|-|..|++ T Consensus 135 ~r~~-~G~~~~L~~l~~~~v~v~~~--~~~~~y~~~~~-------g~~~~~~~~eVihir~~~~dg--~~G~spi~~~~~ 202 (424) T protein:vir:18 135 DRNS-AGDVISLLPLQSANMDVKLV--GKKVVYRYQRD-------SEYADFSQKEIFHLKGFGFTG--LVGLSPIAFACK 202 (424) T ss_pred EECC-CCcEEEEEEecCcceEEEEc--CCeEEEEEEeC-------CeEEEeccccEEEecCcCCCC--cccccHHHHHHH Confidence 6653 45588999999999987654 45566666432 334568899999998655554 489999999999 Q ss_pred HHHHHHHHHHHH-HHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhh Q lcl|Aclame:pro 226 IWNQLRLMEDAL-MLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYF 304 (533) Q Consensus 226 ~~NqLrm~Edal-VIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDyw 304 (533) .+.....+++.. -.|.-.-.| +-++..+-+.+.+..+ +-+++.+.++..- + ..|.+ + .|+ T Consensus 203 ~i~~~~~~~~~~~~~f~ng~~~-~gil~~~~~~l~~e~~-~~~~~~~~~~~~~---~-nag~~---------~-vl~--- 263 (424) T protein:vir:18 203 SAGVAVAMEDQQRDFFANGAKS-PQILSTGEKVLTEQQR-SQVEENFKEIAGG---P-VKKRL---------W-ILE--- 263 (424) T ss_pred HHHHHHHHHHHHHHHHhccCCc-ceEEEeCCcCCCHHHH-HHHHHHHHHHhCC---c-ccCCc---------e-ecc--- Confidence 998888888733 333322222 2344444333454443 3344444443210 1 12222 1 121 Q ss_pred cccccCCCcceeeecCC--CCCChHHHHHHHHHHHHHhcCCCeeeccCCCCcc-chhhhhHHHHHHHHH-HHHHHHHHHH Q lcl|Aclame:pro 305 IPRRGDRRAVEIDILQG--SKVDLAEDVEYMLNRLISALKVPKAFIGYEGDVN-AKNTLATQDIKFNNT-IKRIQGFFVE 380 (533) Q Consensus 305 lprR~g~~gtEi~TLpG--~nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~g-r~~eI~rde~kF~kf-I~rLr~~F~~ 380 (533) .|.+++-|.= ..+.-++-.+|....+.+++|||.+.|+...+.. .++.+....+.|.++ |.-+-+++.+ T Consensus 264 -------~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f~~~tl~P~~~~ie~ 336 (424) T protein:vir:18 264 -------AGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGFLQYTLQPYISRWEN 336 (424) T ss_pred -------CCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHH Confidence 2456665521 1222344467888999999999999997544321 224455555666553 4556667778 Q ss_pred HHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccC Q lcl|Aclame:pro 381 ELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGG 460 (533) Q Consensus 381 ~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~ 460 (533) .|.+.|+..... ..+.+.|.-+.. ... -.+.|.+.+..+ -+..-||.+|+-. .++..+ T Consensus 337 ~ln~~L~~~~~~--~~~~~~fd~~~l----lr~-d~~~r~~~~~~~----------~~~G~~T~NE~R~-----~~gl~p 394 (424) T protein:vir:18 337 SIQRWLIPSKDV--GRLHAEHNLDGL----LRG-DSASRAAFMKAM----------GESGLRTINEMRR-----TDNMPP 394 (424) T ss_pred HHHhhcCCcccc--CCeEEEEechhh----hcc-CHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCC Confidence 887777654322 234566664433 221 234455555543 1334566533221 122222 Q ss_pred CCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCc Q lcl|Aclame:pro 461 LFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGG 523 (533) Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 523 (533) + ++-|+-..+. ...|+ +..|....... +|+ T Consensus 395 i---~ggD~~~~~~-----n~~~l--------~~~~~~~~~~~-----------------n~a 424 (424) T protein:vir:18 395 L---PGGDVAMRQA-----QYVPI--------TDLGTNKEPRN-----------------NGA 424 (424) T ss_pred C---CCcCeeeecc-----Cccch--------hhhhccCCccc-----------------cCC Confidence 2 1111110000 00110 01111111111 111 No 84 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=99.38 E-value=4.7e-11 Score=77.19 Aligned_cols=398 Identities=12% Similarity=0.101 Sum_probs=189.9 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~A 83 (533) |.+|. .+ |..+.... ...+....+..+. ....++|..-+. +.+...|-|.+| T Consensus 1 Mg~f~-------------~l--f~r~~~~~--~~~~~~~~~~~~~---~~~~~~g~~v~~--------~~al~~~~v~~~ 52 (414) T protein:vir:44 1 MVFFS-------------GL--FQRKSDAP--VTTPAELADAIGL---SYDTYTGKQISS--------QRAMRLTAVFSC 52 (414) T ss_pred Cchhh-------------hh--hccCccCc--ccchhhHhHhhcc---CccccCCceech--------hhhhccHHHHHH Confidence 11111 11 11111110 0001000000000 111112222121 123457899999 Q ss_pred HHHhhceee-----ecCCCCceeeeecccccccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCC Q lcl|Aclame:pro 84 LDIIADECT-----IPNENGNIVDVVTKDIELAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGS 150 (533) Q Consensus 84 Id~Ivneai-----v~d~~~~~v~v~l~~~e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~ 150 (533) |+.|++.+= ++..++..... ..+ ..+..+| ......+..++.+++.|+.|..++.+ T Consensus 53 i~~Ia~~ia~~p~~~~~~~~~~~~~------~~~---~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~-- 121 (414) T protein:vir:44 53 VRVLAESVGMLPCNLYHLNGSLKQR------ATG---ERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKA-- 121 (414) T ss_pred HHHHHHHhccCceEEEEecCCceee------ccc---chHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeC-- Confidence 999997742 22222111110 001 1123333 34567888999999999999876543 Q ss_pred CCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHH Q lcl|Aclame:pro 151 DGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQL 230 (533) Q Consensus 151 k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqL 230 (533) .+.+.+|.+|+|.+|.+..+..+...|++... .+....+++++|+|+.+..+++ -+|+|.+..|...+... T Consensus 122 ~g~~~~L~~l~~~~v~~~~~~~~~~~y~~~~~-------~g~~~~~~~~evih~~~~~~d~--~~G~s~i~~~~~~i~~~ 192 (414) T protein:vir:44 122 FGEVAELLPVDPGCVVPKLNSSWEPVYQVTFP-------DGSTDVLSQEDIWHVRTLTLDG--LVGLNPIAYAREAISLA 192 (414) T ss_pred CCcEEEEEEEcCceEEEEECCCCcEEEEEEec-------CceEEEEccccEEEecCCCCCC--cccccHHHHHHHHHHHH Confidence 46788999999999999988877655443321 2344568899999998654443 58999999999998888 Q ss_pred HHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccC Q lcl|Aclame:pro 231 RLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGD 310 (533) Q Consensus 231 rm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g 310 (533) ..+++...-+----+-.+-++.++ +++-+.++++..+.+...|+. -.+.|.+ + .+ T Consensus 193 ~~~~~~~~~~f~ng~~p~gil~~~-~~l~~e~~~~~~~~~~~~~~g----~~n~~~~---------~-vl---------- 247 (414) T protein:vir:44 193 AATEEHGARLFSNGAVTSGVLRTE-QTLSDQAYERLKKDFEERHTG----LGNAHRP---------M-IL---------- 247 (414) T ss_pred HHHHHHHHHHHhccCCCceEEEeC-CCCCHHHHHHHHHHHHHHhcC----ccccCcc---------e-ec---------- Confidence 888875544333333234444444 355555555555555544431 0112222 1 11 Q ss_pred CCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 311 RRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVR 387 (533) Q Consensus 311 ~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLi 387 (533) ..|++++.|.-. .+.-++-.++..+.+.+++|||.+.|+..++.. .+.+.-.-..|.+ -|.-+-.++.+.|...|+ T Consensus 248 ~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~~~t-~~n~e~~~~~~~~~~l~P~~~~ie~~ln~~L~ 326 (414) T protein:vir:44 248 EMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRAT-FNNIEELGLGFINYSLVPYLTRIEQRINTGLV 326 (414) T ss_pred CCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHhhcC Confidence 134566666321 233345577888999999999999998644322 2223333344555 344455567777777665 Q ss_pred hccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCccc Q lcl|Aclame:pro 388 MNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGF 467 (533) Q Consensus 388 lk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~ 467 (533) ...- ...+.+.|..+. +...+ +..|.+.+..+- +-.-||..|.-. .++ ++|-++- T Consensus 327 ~~~~--~~~~~i~fd~~~----ll~~d-~~~~~~~~~~~~----------~~G~~t~NE~R~-----~~g---l~p~~gg 381 (414) T protein:vir:44 327 RKSK--QGVFYAKFNAGA----LLRGD-MKSRFEAYATGI----------NWGIYSPNDCRD-----LED---MNPRPGG 381 (414) T ss_pred Cccc--cCceEEEEechh----hhccC-HHHHHHHHHHHH----------hCCCcCHHHHHH-----HhC---CCCCCCc Confidence 4321 112345665443 22211 233444443321 113355433221 112 2222221 Q ss_pred ccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhc Q lcl|Aclame:pro 468 GEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEET 520 (533) Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (533) |+-..|..- ...|........+.+.+ .+.++. + T Consensus 382 D~~~~~~n~---~~~~~~~~~~~~~~~~~--------------~~d~~~---~ 414 (414) T protein:vir:44 382 DVYLTPMNM---TTKPSDGSKAGKQKDNA--------------NADETT---S 414 (414) T ss_pred ceecccccc---cccCCccccCCCCCCCC--------------CCCCCC---C Confidence 111111100 00000000000000000 111110 0 No 85 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=99.37 E-value=2.4e-11 Score=78.80 Aligned_cols=429 Identities=11% Similarity=0.027 Sum_probs=194.5 Q ss_pred HHHHHHhhccccccc--Cccc--CCCCccc-----C-----CCCCccccchhhcccccCccccchHHHHHHHHHHhhcCh Q lcl|Aclame:pro 13 AVNFTNFLSPMYGMG--APHG--AGGSSMI-----P-----INMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDP 78 (533) Q Consensus 13 ~~~~~~~~~~~~s~~--~p~~--~~gas~i-----~-----~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~P 78 (533) +- +++.+.|.. +|+. ...++.- . ..-..|...+..+++.. .. +...-..--.+.+...| T Consensus 1 M~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~-~~~~g~~v~~~~a~~~~ 73 (466) T protein:vir:81 1 MR----LIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPST--EL-APDTFVGLATQAYQANG 73 (466) T ss_pred Cc----hhHHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhccccc--cc-cCccccccchhhhhccH Confidence 21 222233221 1111 0000000 0 00000000011110000 00 00000001122345679 Q ss_pred hHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHH-HHH-------hhhHHHHHHHHHHHhhcCceeEEEeecC- Q lcl|Aclame:pro 79 LISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYL-DYV-------INIEKNAYPIIRNMIKYGDMFLHILEKG- 149 (533) Q Consensus 79 EV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i-~~l-------l~f~~~~~e~~R~wyvDGr~~~~kiid~- 149 (533) .|.+||+.|++.+-. .|+.+--++-.-...+++.. ..| +......+.++..+++.|+.|..++.+. T Consensus 74 ~v~~~i~~Ia~~ia~-----lp~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~ 148 (466) T protein:vir:81 74 PVFACMLVRQLVFSS-----VRFRWQRLRDGKPSDTFGSRDLQILETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEF 148 (466) T ss_pred HHHHHHHHHHHhhcc-----CceEEEEecCCceeeccccHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCc Confidence 999999999977432 12222111100011111111 122 2345567788889999999999988753 Q ss_pred ------CCCCeeeeEEcCcceeeEEeeccCcE-EEEEecccceecccCCcccccCcccEEEEecC-cccCcccccchhHH Q lcl|Aclame:pro 150 ------SDGTIEKFQVVSPYIFSKRYNPETDT-WYYVITDVYRNVVSGYFNEDIPEEDVIHFSHK-IDTNFFPYGRSYLE 221 (533) Q Consensus 150 ------~k~gI~elr~ldP~~ik~v~d~~g~~-e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~-~~~d~~~~g~s~L~ 221 (533) ..+-+.+|..|+|.+|++..+..+.. ..|.|+..... .+.....+++++|+|+.+. ...+ +-+|+|.+. T Consensus 149 g~l~~~~~g~~~~l~~l~~~~v~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~dviHir~~~~~~d-~~~G~s~i~ 225 (466) T protein:vir:81 149 VRMRPDWVDVVVEERMVRGGRGELGGGQLGWRKVGYLYTEGGRQ--SGNESVGFLAEDVVHFAPIPDPLA-SYRGMSWLT 225 (466) T ss_pred cccccccCcceeEEEEecCcceEEEEcCCCceEEEEEEEecCcc--cccceeeeccccEEEEcCCCCccc-ccccccHHH Confidence 12337899999999999999887764 34555433211 1233456789999999742 2222 348999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccceeeecCCC-CCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHH Q lcl|Aclame:pro 222 SARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESIL 300 (533) Q Consensus 222 ~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvG-nlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~sml 300 (533) .|++.+.....+++...-+ .+.=-++-..+.+. .+.+..+++..+.+...|+- ..+.|.+. .+ T Consensus 226 ~~~~~i~~~~a~~~~~~~~--f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g----~~n~g~~~----------vl 289 (466) T protein:vir:81 226 PILREIRADQAMSKHQAKF--FDNGATVNLVIKHNPMADPAAVKKWADEVNSKHAG----VDNAWKNL----------NL 289 (466) T ss_pred HHHHHHHHHHHHHHHHHHH--HhcCCCcceEEecCCCCCHHHHHHHHHHHHHHhcC----ccccccce----------Ec Confidence 9999998888887743322 22212333344443 46555555555555455431 11123221 12 Q ss_pred hhhhcccccCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchh--hhhHHHHHHHHH-HHHHH Q lcl|Aclame:pro 301 KDYFIPRRGDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKN--TLATQDIKFNNT-IKRIQ 375 (533) Q Consensus 301 eDywlprR~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~--eI~rde~kF~kf-I~rLr 375 (533) ..|.+++.|.-. .+.-++-.+|....+.++.+||...|+...+.++++ .+.-.-+.|.++ |.-+. T Consensus 290 ----------~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~ 359 (466) T protein:vir:81 290 ----------YPGADADVVGSNLQEIDFKNVRGGGETRIAAAAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLW 359 (466) T ss_pred ----------CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcccccCCCccccccHHHHHHHHHHHHHHHHH Confidence 124566666322 223345567899999999999999998655544433 344444457665 47778 Q ss_pred HHHHHHHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhh Q lcl|Aclame:pro 376 GFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEA 455 (533) Q Consensus 376 ~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~ 455 (533) .+|++.|.+.|+..+. ...+.|+|..+... .. -++.|.++.....-++. -+..+- +|.++.-. +.. T Consensus 360 ~~ie~~l~~~L~~~~~--~~~~~~~f~~~~ll----r~-d~~~r~~~~~~~~~~~~--~~~~~g--~t~nE~r~---~~~ 425 (466) T protein:vir:81 360 QNLSGCIGHVMPDMGP--DVRLWYDADDVPFL----RE-DEKDAADIQKVRAETIN--TLITAG--YEPESVVA---AVN 425 (466) T ss_pred HHHHHHHHhhcCCccc--CcceEEEecchhhh----cc-CHHHHHHHHHHHHHHHH--HHHHcC--CChhhccc---ccc Confidence 8888888887764321 11244566544331 11 12334433221111110 011111 23222110 000 Q ss_pred hcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCC Q lcl|Aclame:pro 456 AGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGG 522 (533) Q Consensus 456 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 522 (533) .+.....+... +.|.+. .|.+......+.+ +...|| +.||+ T Consensus 426 ~gd~~~~~~~~----~~~~~~---------~~~~~~~~~~~~~-~~~~Gg------------~~ngn 466 (466) T protein:vir:81 426 SGDLRLLKHTG----LTSVQL---------LPPGVSASASSDT-PTSGGA------------DDNGN 466 (466) T ss_pred CCccccccCCC----cchhhh---------cccccccccCCCC-cccCCC------------CcCCC Confidence 00000000000 011100 0111100000110 011122 12333 No 86 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=99.36 E-value=6e-11 Score=76.63 Aligned_cols=423 Identities=11% Similarity=0.069 Sum_probs=201.3 Q ss_pred CCC--cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcCh Q lcl|Aclame:pro 1 MPS--LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDP 78 (533) Q Consensus 1 ~~~--~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~P 78 (533) -|- |-.|+..-...-+--+| ++|...- ..+.+.+.. ..........++.+..... +. ...+..+| T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-~~f~~~e----~r~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~--~~~al~~~ 71 (441) T protein:vir:98 5 NTDCYFVDFKSRKQSRKELVVV-GIFYKNE----KRDLQYNED--DLQMMVQTLPGFQGTKLRQ----YK--DIEAIRHS 71 (441) T ss_pred cCccceeccccccchhhhhhcc-ccccccc----cccccCCCc--chHHHHHHhhcccccCccc----cc--hhhhhccH Confidence 232 45566655555222333 4443211 122222211 1111000111111111110 00 11234578 Q ss_pred hHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecCC Q lcl|Aclame:pro 79 LISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKGS 150 (533) Q Consensus 79 EV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~~ 150 (533) .|..||+.|++.+-. .|+.+- ++-+. ...+.+..+|+ -....+..+..++..|+.|..++.+. T Consensus 72 ~V~acv~~Ia~~iA~-----lpl~~~-~~~~~--~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~- 142 (441) T protein:vir:98 72 DIFTAVMMIASDLAR-----MPIRVT-VNGQI--NYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK- 142 (441) T ss_pred HHHHHHHHHHHhhcc-----CceEEe-cCCcc--cccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcC- Confidence 999999999976442 222221 11111 11122344442 23567788889999999999988764 Q ss_pred CCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHH Q lcl|Aclame:pro 151 DGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQL 230 (533) Q Consensus 151 k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqL 230 (533) .+-+.+|.+|+|.+|++.++..|...|+.+... .........+++.+|||+.+...++ -+|+|-|+.|.+.+... T Consensus 143 ~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~dviHir~~~~dg--~~G~spi~~~~~~i~~~ 217 (441) T protein:vir:98 143 TGEPMNLTFRKTSEIELKLDARGRLYYFHQRID---SNGNNIERNVKFEDMLDIKFYSLDG--INGLSLLDTLSRTIESD 217 (441) T ss_pred CCcEEEEEEEcCceeEEEECCCCcEEEEEEEec---cCcceeeEEEccccEEEeccCCCCC--ccccCHHHHHHHHHHHH Confidence 345889999999999999998888776654321 0112233467889999998654444 48999999999988888 Q ss_pred HHHHHHHHHHHHhccccceeeecCC-CCCchhhHHHHHH-HHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccc Q lcl|Aclame:pro 231 RLMEDALMLYRVVRSVDRRVFYVDV-GNVPPDKINEYLT-NIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRR 308 (533) Q Consensus 231 rm~EdalVIyRi~RAPeRr~fyidv-Gnlp~~kAeqy~~-~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR 308 (533) ..+++... +..+---++-..+.+ |.+...++.+-++ .+...|. -..+.|.+ + .|+ T Consensus 218 ~a~~~~~~--~~f~ng~~~~gil~~~~~~~~~e~~~~~~~~~~~~~~----G~~nag~~---------~-vl~------- 274 (441) T protein:vir:98 218 NNGKDFLN--NFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFS----GTKQAGKV---------V-VLD------- 274 (441) T ss_pred HHHHHHHH--HHHhccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHhc----CccccCcc---------e-ecC------- Confidence 77777443 223322333334433 3443334433333 3333331 11112222 1 221 Q ss_pred cCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 309 GDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMV 386 (533) Q Consensus 309 ~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qL 386 (533) .|.+++.|.=. .+.-++.-+|..+.+.+++|||...|+.+.. + +.+....+-|..-+.-+..++++.|...| T Consensus 275 ---~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~-~--~s~~q~~~~y~~tl~P~~~~ie~~ln~~L 348 (441) T protein:vir:98 275 ---ESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA-N--MSITDANLDYLSTLKPYITCVCAELNFKF 348 (441) T ss_pred ---CCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCC-C--ccHHHHHHHHHHHHHHHHHHHHHHHHhhc Confidence 24566655311 2333455677788999999999999974332 2 22333344455555555667777777776 Q ss_pred hhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcc Q lcl|Aclame:pro 387 RMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGG 466 (533) Q Consensus 387 ilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~ 466 (533) .... +...+.|..+. +.... ++.|.+++..+ -+..-||..|.-.. ++ ++|-++ T Consensus 349 ~~~~----~~~~~~fd~~~----llr~d-~~~~~~~~~~~----------~~~G~~T~NE~R~~-----~g---l~pi~g 401 (441) T protein:vir:98 349 NDEY----VNREFKFDTTE----IRVVD-EKTQAEIDKIN----------IDSGKMNIDEIRQR-----DG---LAPIPG 401 (441) T ss_pred cccc----cCceEEEechh----hhccC-HHHHHHHHHHH----------HhCCCcCHHHHHHH-----hC---CCCCCC Confidence 4221 12234443322 22111 23344444432 12235665433211 22 222222 Q ss_pred cccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccC Q lcl|Aclame:pro 467 FGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEE 526 (533) Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (533) -++...+ .+....|++..........+......-|||- .+ T Consensus 402 Gd~~~~~---~~~n~~~~~~~~~~q~~~~~~~~~~~kgGe~-----------------ne 441 (441) T protein:vir:98 402 GNGSIHR---VDLNHVNIELVDEYQMNKSRATDKKLKGGEE-----------------NE 441 (441) T ss_pred CCcceEe---ecccccccccccccccccccccccccCCCCC-----------------CC Confidence 1111111 1112222222211111111111122222221 11 No 87 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=99.35 E-value=6.7e-11 Score=76.35 Aligned_cols=444 Identities=10% Similarity=0.015 Sum_probs=191.0 Q ss_pred ccccc--CcccCCCCcccCCCCCccccchhhc-ccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCc Q lcl|Aclame:pro 23 MYGMG--APHGAGGSSMIPINMYHPFATAGYA-SRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGN 99 (533) Q Consensus 23 ~~s~~--~p~~~~gas~i~~~~~~~~~~~~~~-~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~ 99 (533) ||.+. ++.-..- +.|... .+..+...-. ...|.. -.| ....++++...|-|.+||+.|++.+-.... T Consensus 1 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~p-p~~----~~~La~~~~~n~~v~scI~~ia~~ia~~~~--- 70 (540) T protein:vir:41 1 MFNYHLSIKSLEKY-RAIKGD-TDSQALKEDRFEEYVEP-KVH----PLVLLSLLQVNPYHASACSIKANDILRTGY--- 70 (540) T ss_pred CCCcccChhhccch-hhhhcc-ccccccccCCCCccccC-CCC----HHHHHHHHHhcHHHHHHHHHHHHHHhcCCc--- Confidence 55442 2221110 111111 1111111000 011111 113 334455666678999999999988653332 Q ss_pred eeeeecccccccHHHHHHHH--HHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCc--- Q lcl|Aclame:pro 100 IVDVVTKDIELAKAILSYLD--YVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETD--- 174 (533) Q Consensus 100 ~v~v~l~~~e~s~si~~~i~--~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~--- 174 (533) .+..++..+ ..++ ..+......+.++..+++.|+.|+.++.+. .+.+.+|.+|||.+|++.++..+- T Consensus 71 --~i~~~~~~~-----~~~lpN~~~t~~~f~~~~v~dlll~Gnayv~i~r~~-~G~~~~L~~i~~~~V~v~~~~~~~~~~ 142 (540) T protein:vir:41 71 --LIDGDDGGV-----EELLRACRPSFEFILLQALEDLQVFNYCTLEVVRDD-QGEPVRLDYIPAHTVRVHRDGSRYMQT 142 (540) T ss_pred --eEecCccch-----hhhccCCCCCHHHHHHHHHHHHHhcCCeEEEEEECC-CCcEEEEEEeCCcceEEeEcCceeEee Confidence 222221110 0011 123455667788889999999999998864 456999999999999988765431 Q ss_pred ----EEEE--Eeccccee-cccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccc Q lcl|Aclame:pro 175 ----TWYY--VITDVYRN-VVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVD 247 (533) Q Consensus 175 ----~e~y--~y~~~~~~-~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPe 247 (533) ..+| .|...... ...+.....+++.+|||+......+ +.||+|-|..|++.+.....+++...-|----+-. T Consensus 143 ~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eViHir~~~~~~-~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p 221 (540) T protein:vir:41 143 WDGIHVTYFKDYRYEGEVNPDNGEDQDGVGANEIIFIHLPSPIC-SYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIP 221 (540) T ss_pred ecCceeeeeecccccceeeccccccceeecccceEEecCCCCCC-CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 1111 11111111 1233344567889999996443322 35999999999998888887777443222112222 Q ss_pred ceeeecCCCCCchh----hHHHHHHHHHHH-hhhcee-eccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC Q lcl|Aclame:pro 248 RRVFYVDVGNVPPD----KINEYLTNIAMQ-YKRDYW-VRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG 321 (533) Q Consensus 248 Rr~fyidvGnlp~~----kAeqy~~~im~~-~knk~v-yd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG 321 (533) .-++.++.+-.+.. ++.+-++..+.+ +.+..- ...+.|.+. +|+. | -.+..|++++.|.- T Consensus 222 ~giL~~~g~l~~e~~~~~~~~~~~~~~~~~~~~~~~~g~~~nag~~~----------vLe~---~-~~~~~g~~~~pl~~ 287 (540) T protein:vir:41 222 SYVITVTGEFEDEMELGSDGEPTGRTVLQGLIEDNFKYLKEAPHTPL----------VFSI---P-GGDTVEVTFTPLNT 287 (540) T ss_pred ceEEEeCcccCchhccchHHHHHHHHHHHHHHHHHhccccccccceE----------EEec---C-CCcccceeEEeccc Confidence 34455553322221 222222222222 111100 011223221 1110 0 01123556665532 Q ss_pred C--CCChHHHHHHHHHHHHHhcCCCeeeccCCC-CccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccce Q lcl|Aclame:pro 322 S--KVDLAEDVEYMLNRLISALKVPKAFIGYEG-DVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDF 397 (533) Q Consensus 322 ~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~-~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew 397 (533) . .+.-++-.++..+.+.++++||...++... +....+.+......|.+ -+.-+.+++.+.|.+.|+... ...+ T Consensus 288 ~~~d~qfle~~~~~~~eIa~afgVPp~~lG~~~~~~~n~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~---~~~~ 364 (540) T protein:vir:41 288 SQKELSFREYAAEKKHDIAAAHMIDPYRLGITDVGPLGGNFAEVARRTYYESVVRPQQEIVSSVLTDFIQLKL---DPGA 364 (540) T ss_pred chhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---CCce Confidence 1 122234467888889999999999997532 22223344444455655 377788888888877665431 2346 Q ss_pred eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchh--- Q lcl|Aclame:pro 398 RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPA--- 474 (533) Q Consensus 398 ~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~--- 474 (533) .|.|..+.. ...++ ..+++.+. +..-||..+.- +.+ .++.+ ..+.-+.|. T Consensus 365 ~i~f~~~~l----l~~D~-~~~~~~lv-------------~~G~lT~NE~R--e~L-----~g~e~--gdd~~l~p~n~~ 417 (540) T protein:vir:41 365 RFVFNEEIL----MESEF-VHNYALLV-------------QCGVLTPSEVR--EKL-----FGLDG--GPDMFMVPSSIG 417 (540) T ss_pred EEEecchhh----cchHH-HHHHHHHH-------------hCCCCCHHHHH--HHh-----CcCcC--CCcccccccccc Confidence 677776543 22222 22333221 22334532221 111 00110 000000000 Q ss_pred -hhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCc---------ccCCCCCCCC Q lcl|Aclame:pro 475 -DFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGG---------EEELPFPEEE 533 (533) Q Consensus 475 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~ 533 (533) ..........+.+..++....+........++ +.. +...++.++. -++-+.++.+ T Consensus 418 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (540) T protein:vir:41 418 KSAMKRQKRNYEKNQINEIKRTYAKYKPRIQEI--ISS--ESPLEDKKKKIDEVLSDFRAEAYENGKKM 482 (540) T ss_pred cccccccccccCCCCccccccccchhcccccCc--ccc--ccccccccccccccccccCCccccchhHH Confidence 00000000000000000000000000011111 000 0001111100 0001111111 No 88 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=99.35 E-value=2.1e-11 Score=79.08 Aligned_cols=395 Identities=16% Similarity=0.122 Sum_probs=187.3 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~A 83 (533) |..|. .++.+ ++. ...... +.......++.+....... +..+ ...|.|.+| T Consensus 1 Mg~f~-------------~~~~~--~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~v~~~ 51 (406) T protein:vir:95 1 MGLFD-------------RWRRT--KRK-SKIRAD------TGYVGLFMSGEDVSFLVPG------YVRL-SDNPEVRMA 51 (406) T ss_pred Ccchh-------------hhccc--ccc-cccccc------chhhhhhccCcccCccccC------HHHH-hhcHHHHHH Confidence 22221 11111 111 111111 1111111111111111111 2223 356999999 Q ss_pred HHHhhceeeecCCCCceeeeecccccccHHHHHHHHHH--------hhhHHHHHHHHHHHhhcCce--eEEEeecCCCCC Q lcl|Aclame:pro 84 LDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYV--------INIEKNAYPIIRNMIKYGDM--FLHILEKGSDGT 153 (533) Q Consensus 84 Id~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~l--------l~f~~~~~e~~R~wyvDGr~--~~~kiid~~k~g 153 (533) |+.|++.+--.+ +.+-..+-+-...+...+..+ +......+.+++.++++|+- |..+..+ .++- T Consensus 52 i~~ia~~ia~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~-~~g~ 125 (406) T protein:vir:95 52 VHKIADLISSMT-----IYLMQNTEDGDIRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYT-ADGL 125 (406) T ss_pred HHHHHHhhccCc-----eEEEEecCCcceeecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEEC-CCCc Confidence 999998754322 222111101111112222333 34566788888889998764 5554444 3456 Q ss_pred eeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 IEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLM 233 (533) Q Consensus 154 I~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~ 233 (533) +.+|..|+|.+|+++.+..+ |.|... ...+++++++|+.+......+-+|+|.+..|...+.....+ T Consensus 126 ~~~l~~i~~~~v~~~~~~~~----~~~~~~---------~~~~~~~evih~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~ 192 (406) T protein:vir:95 126 IDELVPLTPSKVNFLDTPDG----YQVLYG---------GQTFNYDEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQA 192 (406) T ss_pred EEEEEEEcCceeEEEEcCCe----EEEEec---------cEEEchhHEEEeeccCCCCCCccccCHHHHHHHHHHHHHHH Confidence 89999999999999888775 323211 12477899999986544433458999999999999998888 Q ss_pred HHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCc Q lcl|Aclame:pro 234 EDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRA 313 (533) Q Consensus 234 EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~g 313 (533) ++...-+----+..+-++.++- .+.+..+++..+.+..+|+.- +. .|.+ +-+.. +|... T Consensus 193 ~~~~~~~~~ng~~~~~il~~~~-~l~~e~~~~~~~~~~~~~~g~---~n-~~~~---------~v~~~-------~~~~~ 251 (406) T protein:vir:95 193 TATKKSFMSGKYMPSLIVKVDA-ATAELSSEEGRNAVFKKYLQA---TE-AGQP---------WIIPA-------ELLEV 251 (406) T ss_pred HHHHHHHHhccCCcceEEEeCC-CCCHHHHHHHHHHHHHHhccc---cc-cCCc---------eeecC-------CCccc Confidence 8866555444444445555543 456667777667766665410 11 1111 10000 11112 Q ss_pred ceeeecCCCCCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCC Q lcl|Aclame:pro 314 VEIDILQGSKVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEF 392 (533) Q Consensus 314 tEi~TLpG~nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~ 392 (533) ++++.+....+.-++-.++..+.+++++|||...|+..+ .++.+. ..|.. -|.-+..++++.|...|+ T Consensus 252 ~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~----~~~~~~--~~~~~~~l~P~~~~ie~~l~~~l~----- 320 (406) T protein:vir:95 252 EQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLGIGE----FNRDEY--NNFINSTILPIAKGIEQELTRKLL----- 320 (406) T ss_pred cccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC----chHHHH--HHHHHHHHHHHHHHHHHHHHHhcC----- Confidence 333333222233344578889999999999999996321 112111 12333 344455566666666664 Q ss_pred CccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccc Q lcl|Aclame:pro 393 ADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETT 472 (533) Q Consensus 393 t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~ 472 (533) ++.++.+.|..+.. ... -.+.|.+.+..+ -+..-||.++.-. ..+..++ ++.|+-.. T Consensus 321 ~~~~~~~~fd~~~l----~~~-d~~~~~~~~~~l----------~~~G~~t~NE~R~-----~~gl~p~---~~gd~~~~ 377 (406) T protein:vir:95 321 ISPDLYFKFNPRSL----YAY-DLKELAEVGSNM----------YVRGIMEGNEVRD-----WLGLSPK---EGLSELVI 377 (406) T ss_pred CCCCcEEEeechhh----hcC-CHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCC---CCcceeee Confidence 45566777754443 111 122344444332 1233456433321 1222222 12111111 Q ss_pred hhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCccc Q lcl|Aclame:pro 473 PADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEE 525 (533) Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 525 (533) + .-..|++. ..+.....||+-+ +. +|-++ T Consensus 378 ~-----~n~~~~~~---------~~~~~~~k~g~~~--~~--------~~~~~ 406 (406) T protein:vir:95 378 L-----ENYIPLDK---------IGDQSKLKGGDNS--GA--------DGQTD 406 (406) T ss_pred c-----cCccchhh---------cccccccCCCCCC--CC--------CCCCC Confidence 1 11111111 1111222333311 11 11111 No 89 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=99.35 E-value=8.9e-12 Score=81.17 Aligned_cols=380 Identities=12% Similarity=0.107 Sum_probs=176.1 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) |--|.+|++.-+.. +...+ .... ...+... +..-+|.. + +.+.+.++|-| T Consensus 1 M~~f~~~~~~~~~~--------------~~~~~--~~~~--~~~~~~~----~~~~~~~~------v--~~~~al~~~~v 50 (386) T protein:vir:49 1 MPIFNITNLATESP--------------PINQE--SFFD--IADSDFL----ASLNSSEW------V--SAENALKNSDL 50 (386) T ss_pred CchhhhhccCCCCc--------------ccchh--hhhh--hhhcccc----ccccCCce------e--chhhhhccHHH Confidence 22222222110000 00000 0000 0001000 00001111 1 11234468999 Q ss_pred HHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHH----HHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeee Q lcl|Aclame:pro 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLD----YVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEK 156 (533) Q Consensus 81 ~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~----~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~e 156 (533) .+||+.|++.+-. .|+.+.-+. .+.+. ..+.-....+..++.+++.|+.|..++.+. .+-+.+ T Consensus 51 ~~~i~~ia~~ia~-----~p~~~~~~~-------~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~-~g~~~~ 117 (386) T protein:vir:49 51 FSIISQLSNDLAT-----AKITTSRKQ-------LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRND-NGRDMK 117 (386) T ss_pred HHHHHHHHHHhhh-----Cceeeccch-------hhhhhhccCCCCCHHHHHHHHHHHhhhcCCEEEEEEECC-CCcEEE Confidence 9999999976432 122111111 11122 233456678889999999999999887764 345789 Q ss_pred eEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 FQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDA 236 (533) Q Consensus 157 lr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Eda 236 (533) |.+|||.+|+++.+..+...+|.|.... ..++....+++++|||+....+.+. -+|+|.|..|++.+.....+++. T Consensus 118 l~~i~~~~v~v~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~evih~~~~~~~~~-~~G~s~l~~~~~~i~~~~~~~~~ 193 (386) T protein:vir:49 118 WEYLRPSQVSFNRLDNQNGLYYNITFDD---PHIAPKQHVPQNDILHFRLLSVDGG-LTSVSPLMALGREFNIQKASDKL 193 (386) T ss_pred EEEecCceeEEEEcCCCceEEEEEEEcC---ccccceeEEccccEEEecCCCCCCc-cccccHHHHHHHHHHHHHHHHHH Confidence 9999999999999998888888774321 1233445678899999986555442 48999999999999999888886 Q ss_pred HHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCccee Q lcl|Aclame:pro 237 LMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEI 316 (533) Q Consensus 237 lVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi 316 (533) ..-+--..+-.+-++.++-...+ ..++ .++..+.. -++ +.|.+. .+ ..|.++ T Consensus 194 ~~~~~~ng~~~~~il~~~~~~~~-~~~~-~~~~~~~~-----~~~-n~g~~~----------vl----------~~g~~~ 245 (386) T protein:vir:49 194 TISALKNALNANGILKIKGGGLL-DFKT-KVSRSRQA-----MKQ-MQGGPL----------VL----------DDLEDF 245 (386) T ss_pred HHHHHHccCCccEEEEeCCCCCh-HHHH-HHHHHHHH-----hcc-CCCCce----------ec----------CCCceE Confidence 65444444545556666544333 2222 23332222 122 234321 11 124566 Q ss_pred eecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCc Q lcl|Aclame:pro 317 DILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMVRMNKEFAD 394 (533) Q Consensus 317 ~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qLilk~i~t~ 394 (533) +.|.=. .+.-++-.++....+.++++||...|+.+.+-....+ ..+..+..||.-+=..+.+.|...|..+ T Consensus 246 ~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~--~~~~~~~~~i~~~l~~i~~~~~~~l~~~----- 318 (386) T protein:vir:49 246 TPLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGDGDQQSSLE--MIYNIYFKSVSRYLRPFVSEMSKKLSCE----- 318 (386) T ss_pred EEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcch----- Confidence 666311 1222344688899999999999999985433211111 1222233344333333334444444211 Q ss_pred cceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchh Q lcl|Aclame:pro 395 QDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPA 474 (533) Q Consensus 395 eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~ 474 (533) +.|..+ .+.+... ..+...+..+ ++ -.-+|..|. ++. ....+.-+ ++. T Consensus 319 ----~~~~~~----~~~~~d~-~~~~~~~~~l---~~-------~g~~t~nE~--r~~---l~~~~~~~-~~~------- 366 (386) T protein:vir:49 319 ----VDVDIS----PAVDPTG-SNYISLINSM---VK-------SGTLAQNQG--LYI---LQQAEILP-KEL------- 366 (386) T ss_pred ----hcccch----hhhccCH-HHHHHHHHHH---Hh-------CCCcCHHHH--HHH---HhhCCCCC-CcC------- Confidence 111110 0000000 0111111110 00 011333221 111 11111111 111 Q ss_pred hhcCccCCcccccCCCcccccCCCCCcc Q lcl|Aclame:pro 475 DFLGERGSPIESPRGRTEFDFGTEGGEE 502 (533) Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (533) +..-++...| ..-|.+.++. T Consensus 367 ---~~~~~~~~~~-----~~gGd~~~~~ 386 (386) T protein:vir:49 367 ---PDGKNPNRTS-----LKGGEINEQD 386 (386) T ss_pred ---cchhccCCCC-----CCCCCCCCCC Confidence 0000110011 0111111111 No 90 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=99.32 E-value=3.5e-11 Score=77.88 Aligned_cols=382 Identities=14% Similarity=0.102 Sum_probs=179.9 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) |.-|.++++.-. .|....+ ..+.. ..+...+. .-+|..-+. +.+.++|-| T Consensus 1 M~~f~~~~~~~~---------------~~~~~~~-~~~~~--~~~~~~~~----~~~~~~v~~--------~~~~~~~~v 50 (386) T protein:vir:48 1 MPIFNITNLATE---------------SPPISQG-GFFDI--TDPDFLST----LNGSEWVSA--------ESALRNSDL 50 (386) T ss_pred Cccccccccccc---------------ccccccc-ccccc--ccchhccc----ccCCceech--------hhhhcchHH Confidence 444433322200 0111111 01111 11111000 011221121 123468999 Q ss_pred HHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEc Q lcl|Aclame:pro 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVV 160 (533) Q Consensus 81 ~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~l 160 (533) .+||+.|++.+=.... .+ .+.. ...+.+.-...+.-....+..++.++++|+.|..++.|. .+-+.+|.+| T Consensus 51 ~~~i~~ia~~ia~~p~-----~~--~~~~-~~~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~-~g~~~~L~~l 121 (386) T protein:vir:48 51 FSIINQLSNDLATVKL-----TA--SRKQ-LQGIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNE-NGRDMKWEYL 121 (386) T ss_pred HHHHHHHHHhhccCce-----ee--ccch-hHHHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECC-CCcEEEEEEe Confidence 9999999988543221 11 1100 011111111123345567788899999999999877763 4558899999 Q ss_pred CcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 SPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLY 240 (533) Q Consensus 161 dP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIy 240 (533) ||.+|++..+..|...+|.|.... ...+....+++++|+|+......+. -+|+|.|..|++.+.....+++...-+ T Consensus 122 ~~~~v~v~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~evih~~~~~~~~~-~~G~s~i~~~~~~i~~~~~~~~~~~~~ 197 (386) T protein:vir:48 122 RPSQVSFNRLDNKDGIYYNITFDD---PRIPPKQHVPQGDVLHFKLLSVDGG-LTSVSPLMALSRELNIQKASDKLTLNS 197 (386) T ss_pred cCceeEEEEcCCCceEEEEEEecC---ccccceeEecCccEEEecCCCCCCc-eeeccHHHHHHHHHHHHHHHHHHHHHH Confidence 999999999998888777664331 1123345678899999985554442 489999999999999998888854333 Q ss_pred HHhccccceeeecCCC-CCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeec Q lcl|Aclame:pro 241 RVVRSVDRRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDIL 319 (533) Q Consensus 241 Ri~RAPeRr~fyidvG-nlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TL 319 (533) ----+ +.-.++.+. .+-+...+ .++..... -+.+ .|.+ + .+ ..|.++..| T Consensus 198 ~~ng~--~~~~ii~~~~~~~~e~~~-~~~~~~~~-----~~~n-~g~~---------~-vl----------~~g~~~~~l 248 (386) T protein:vir:48 198 LKNAL--NANGILKIKGGGLLDFKT-KLSRSRQA-----MKQM-QGGP---------L-VL----------DDLEEFTPL 248 (386) T ss_pred HhccC--CcceEEEeCCCCCHHHHH-HHHHHHHH-----hhcC-CCCc---------e-ec----------CCCceEEEc Confidence 22222 233344443 33322222 22222221 1122 2322 1 11 135666666 Q ss_pred CCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccc Q lcl|Aclame:pro 320 QGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQD 396 (533) Q Consensus 320 pG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~ee 396 (533) .-. .+.-++=.++..+.+.+++|||...|+...+.++ +.-+.+.|.+ .|.-+...+.+.|...|..+ T Consensus 249 ~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~---~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~------- 318 (386) T protein:vir:48 249 EIKSNVSQLLKQADWTTGQFAKVYGIPENVVGGQGDQQS---SLEMSLDLYNKAVSRYLRPFLSELSQKLSCD------- 318 (386) T ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccc---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch------- Confidence 322 1222344577789999999999999985444333 2233334544 34555566666676666532 Q ss_pred eeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhh Q lcl|Aclame:pro 397 FRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADF 476 (533) Q Consensus 397 w~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~ 476 (533) +++++. ..+ ..+++-- .......++- .++...|..+.-+..+..+ ++.. .+ T Consensus 319 ~~~~~~-----~~~--------------~~d~~~~-~~~~~~l~~~--g~~t~nE~r~~lg~~~~~~-~~~~----~~-- 369 (386) T protein:vir:48 319 VDADIL-----PAV--------------DPTGSNS-VSRINSMVKS--GTLAQNQGLYILQQAEILP-KELP----EG-- 369 (386) T ss_pred hhcchh-----hhh--------------ccChHHH-HHHHHHHHhC--CCcCHHHHHHHhhcCCCCC-ccch----hh-- Confidence 111100 000 0011100 0011111110 1222222222223333332 1111 00 Q ss_pred cCccCCcccccCCCcccccCCCCCcc Q lcl|Aclame:pro 477 LGERGSPIESPRGRTEFDFGTEGGEE 502 (533) Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (533) . .+-..| ..-|...+++ T Consensus 370 --~--~~~~~~-----~~gGd~~~~~ 386 (386) T protein:vir:48 370 --E--NPNKTT-----LKGGEINGED 386 (386) T ss_pred --c--CCCCCc-----cCCCCCCCCC Confidence 0 000011 1112222222 No 91 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=99.31 E-value=3e-11 Score=78.26 Aligned_cols=366 Identities=13% Similarity=0.089 Sum_probs=173.2 Q ss_pred cchhhhhhhHHHHHHhhcccccccC---ccc-CCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChh Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGA---PHG-AGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPL 79 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~---p~~-~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PE 79 (533) |. +|++.. +.. ..+.+.+.. ..+. + .+...+|..-+. + .+.+.|- T Consensus 1 Mg-----------------lf~~~~~~~~~~~~~~~~~~~~--~~~~---~-~~~~~~~~~v~~-------~-~al~~~~ 49 (384) T protein:vir:49 1 MP-----------------IFNITNLATESPPSNQDSFFDI--TDPE---F-LDALNGSEWVSA-------E-TALKNSD 49 (384) T ss_pred Cc-----------------cccccccCcccccccchhhccc--cchh---h-cccccCCceech-------h-hhhccHH Confidence 22 222210 000 001111111 1111 1 111111222121 1 2335789 Q ss_pred HHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHH----HhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCee Q lcl|Aclame:pro 80 ISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDY----VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIE 155 (533) Q Consensus 80 V~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~----ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~ 155 (533) |.+||+.|++.+-.... .+.-+. .+.+.+ .+......+.+++.+++.|+.|..++.|. .+-+. T Consensus 50 V~~~i~~Ia~~ia~l~~-----~~~~~~-------~~~l~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~-~g~~~ 116 (384) T protein:vir:49 50 LFSIISQLSNDLATAKI-----TTSRKQ-------LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNE-NGRDM 116 (384) T ss_pred HHHHHHHHHHHHhhCce-----eeecch-------hhhhhhccCCCCCHHHHHHHHHHHhhhcCCeEEEEEECC-CCcEE Confidence 99999999976432222 111110 111221 23456678889999999999999887764 34588 Q ss_pred eeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 KFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMED 235 (533) Q Consensus 156 elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed 235 (533) +|..|+|.+|+++.+..+...+|.|+... ...+....+++++|||+......+. -+|+|.|..|+..++....++. T Consensus 117 ~L~~l~~~~v~v~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~eVih~~~~~~~~~-~~G~s~i~~~~~~i~~~~~~~~ 192 (384) T protein:vir:49 117 KWEYLRPSQVSFNRLDNQNGLYYNITFDD---PRIPPKQHVPQGDILHFRLLSVDGG-LTSVSPLMALGRELNIQKASDK 192 (384) T ss_pred EEEEEcCceeEEEEcCCCceEEEEEEecC---ccccceeEecCccEEEecCCCCCCc-eeeccHHHHHHHHHHHHHHHHH Confidence 99999999999999888887777764432 2234456688899999986544432 3899999999999998888888 Q ss_pred HHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcce Q lcl|Aclame:pro 236 ALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVE 315 (533) Q Consensus 236 alVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtE 315 (533) ...-+--.-+-.+-++.++-+..+..++ +....++.. .+ +.|.+ + .+ . .|.+ T Consensus 193 ~~~~~~~ng~~~~~il~~~~~~~~~~~~----~~~~~~~~~---~~-n~~~~---------~-vl-------~---~g~~ 244 (384) T protein:vir:49 193 LTLNALKNALNANGILKIKGGGLLDFKT----KQSRSRQAM---KQ-MQGGP---------L-VL-------D---DLED 244 (384) T ss_pred HHHHHHhccCCCceEEEeCCCCChHHHH----HHHHHHHhc---cc-CCccc---------e-ec-------C---CCce Confidence 5543322223334444454443333333 233333321 11 22222 1 11 1 2456 Q ss_pred eeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHH----HHHHHHHHHhhhhhhc Q lcl|Aclame:pro 316 IDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKR----IQGFFVEELERMVRMN 389 (533) Q Consensus 316 i~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~r----Lr~~F~~~l~~qLilk 389 (533) +..|.=. .+.-++-.++..+.+++++|||.+.|+...+ +.++. +.-+-.+..|++- +-.+++..|.+.|.+. T Consensus 245 ~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~-~~~~~-~~~~~~~~~~i~~~l~pi~~~i~~~l~~~l~~~ 322 (384) T protein:vir:49 245 FTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGEGD-KQSSL-EMIYNIYFKAVSRFLRPFVSELSKKLSCEVDAD 322 (384) T ss_pred EEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC-ccccH-HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh Confidence 6655321 2333455788999999999999999986432 22211 1112223334433 2333444343333211 Q ss_pred cCCCccceeEEecCCcHHHHHHHHHHH----HHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCc Q lcl|Aclame:pro 390 KEFADQDFRLVMNRSNSIVEGERFAVI----EQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTG 465 (533) Q Consensus 390 ~i~t~eew~~~f~~dn~f~E~ke~ei~----~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~ 465 (533) ++. .+..+.++.+..-..++ ..|.++... +....-+++|..+ .+...++. -+ T Consensus 323 --~~~-----~~~~~~~~~~~~~~~l~~~~~~t~~e~~~~----------l~~~g~~~ne~r~------~~~~~p~~-gG 378 (384) T protein:vir:49 323 --ILP-----AVDPTGSNYIGLINSMVKTGTLAQNQGLYV----------LQQAEILPKDLPE------GETDSTLK-GG 378 (384) T ss_pred --hhh-----hhhccchHHHHHHHHHhhcCcccHHHHHHH----------HhhCCCCChhHHH------HcCCCCCC-CC Confidence 000 00011111111111111 111111111 1111223322211 11111111 11 Q ss_pred cccccc Q lcl|Aclame:pro 466 GFGEET 471 (533) Q Consensus 466 ~~~~~~ 471 (533) +.+++= T Consensus 379 d~~~~~ 384 (384) T protein:vir:49 379 ETNEQY 384 (384) T ss_pred CCCCCC Confidence 111111 No 92 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=99.31 E-value=8.7e-11 Score=75.74 Aligned_cols=403 Identities=13% Similarity=0.093 Sum_probs=192.3 Q ss_pred cchhhhhhhHHHHHHhhcccccccCccc---CCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHG---AGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~---~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) |. |.+.+|+-..+.. ........+....+. +. ..+ |...... +. ...+...|-| T Consensus 1 MG-------------~f~~lf~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~-g~~~~~~---v~--~~~al~~~~v 57 (422) T protein:vir:13 1 MG-------------FLRGLFNKKNNNDEKRSNYDEDIGIDISDSN---FW-EKF-GIKLNFS---VR--GKRALKENTV 57 (422) T ss_pred Cc-------------hhhhhhhccCCccchhhhhhhccccccCcch---hh-hhc-cccCCcc---cc--hhhhhccHHH Confidence 11 1223333211110 000011111111111 11 111 1111000 11 1122346899 Q ss_pred HHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecCCCC Q lcl|Aclame:pro 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKGSDG 152 (533) Q Consensus 81 ~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~~k~ 152 (533) .+||+.|++.+=- .|+.+--+.-+..+ ..+.++|+ -....+.++..+++.|+.|..++.+. .+ T Consensus 58 ~~ci~~ia~~iA~-----lp~~~~~~~~~~~~---~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~-~G 128 (422) T protein:vir:13 58 YVCTKIRAESIGK-----LSLKIYKDKEEYKE---HELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDR-KG 128 (422) T ss_pred HHHHHHHHHhhhh-----CceEEEecCccccc---chHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECC-CC Confidence 9999999866331 22222111111111 12344443 34678888999999999999988765 35 Q ss_pred CeeeeEEcCcceeeEEeeccCc-----EEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHH Q lcl|Aclame:pro 153 TIEKFQVVSPYIFSKRYNPETD-----TWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIW 227 (533) Q Consensus 153 gI~elr~ldP~~ik~v~d~~g~-----~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~ 227 (533) -+.+|.+|+|.+|+++.+..+. ..+|.++.. .+....+++++++|+.+....+ +-+|+|.+..|.+.+ T Consensus 129 ~~~~L~~i~~~~v~~~~~~~~~~~~~~~~~y~~~~~------~g~~~~~~~~eiih~~~~~~~~-~~~G~s~~~~~~~~i 201 (422) T protein:vir:13 129 KIIGLYPINSDNVTKIIDDDNFLSSLSKVWYVVTDK------NGKEHKLLPDEMLHFIGDITLD-GLIGIKPLDYLRCTI 201 (422) T ss_pred cEEEEEEECCcceEEEEcCCcceeccceEEEEEEeC------CCeEEEEcccceEEEcCCCCCC-CcccccHHHHHHHHH Confidence 5889999999999999988763 234544332 2344567889999998654333 358999999999999 Q ss_pred HHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhccc Q lcl|Aclame:pro 228 NQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPR 307 (533) Q Consensus 228 NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlpr 307 (533) .....+++...-+----+-.+-++.++ +++-+...++..+.+...|.- .+ +.|.+ + .++ T Consensus 202 ~~~~~~~~~~~~~f~ng~~p~gil~~~-~~l~~e~~~~~~~~~~~~~~g---~~-n~~~~---------~-vl~------ 260 (422) T protein:vir:13 202 ENGRATQEFINKFFKNGLSIKGIVQYV-GDLDEKAKKIFKKEFESMSNG---LE-NAHSI---------S-LLP------ 260 (422) T ss_pred HHHHHHHHHHHHHHhccCCccEEEEeC-CCCCHHHHHHHHHHHHHHhcC---cc-ccCCc---------e-ecC------ Confidence 888888774432222223334444444 344444444333333333210 01 11222 1 111 Q ss_pred ccCCCcceeeecCC--CCCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhh Q lcl|Aclame:pro 308 RGDRRAVEIDILQG--SKVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELER 384 (533) Q Consensus 308 R~g~~gtEi~TLpG--~nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~ 384 (533) .|++++.|.= ..+.-++-.++....+.+++|||...|+...+.. .+.+..+...|.. -|.-+-.++++.|.. T Consensus 261 ----~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~~~~-~sn~e~~~~~f~~~~l~P~~~~ie~~l~~ 335 (422) T protein:vir:13 261 ----FGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLERAT-FNNLTEQQKDFYVTTLQSSLTVYEQEIQD 335 (422) T ss_pred ----CCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2344544421 1233345567888999999999999998644322 2233333444544 355566677777777 Q ss_pred hhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCC Q lcl|Aclame:pro 385 MVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDT 464 (533) Q Consensus 385 qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~ 464 (533) .|+...... ..+.+.|..+.. ... -++.|.+++..+ -+..-||..+.-. .++- +|- T Consensus 336 ~Ll~~~~~~-~g~~i~fd~~~l----~r~-d~~~~~~~~~~~----------~~~G~~T~NE~R~-----~~gl---~p~ 391 (422) T protein:vir:13 336 KLFSQYETL-QDVKAEFNVDTI----LRS-DIKTRYEAYRIG----------IQGGFIEANEARR-----RENL---PPV 391 (422) T ss_pred hhCChhhhc-CCceEEeechhh----hcC-CHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCC---CCC Confidence 776543221 234455544332 111 123344444331 1223456433211 1222 221 Q ss_pred cccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCc Q lcl|Aclame:pro 465 GGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGE 506 (533) Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (533) ++-|+-..+ .-..|++... .....+++.||+ T Consensus 392 ~ggD~~~~~-----~n~~~l~~~~------~~~~~~g~~~g~ 422 (422) T protein:vir:13 392 EGGDRLLVN-----GNMIPIEMAG------EQYKKGGEKGGK 422 (422) T ss_pred CCcCeeeec-----cCccchhhcc------cccccCCCcCCC Confidence 222211111 1111222111 011122233333 No 93 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.30 E-value=1.2e-10 Score=74.88 Aligned_cols=439 Identities=9% Similarity=-0.042 Sum_probs=209.6 Q ss_pred cccccccCcccCCCCcccCCCCCcccc--chhhc---ccccC---ccccchHHHHHHHHHHhhcChhHHHHHHHhhceee Q lcl|Aclame:pro 21 SPMYGMGAPHGAGGSSMIPINMYHPFA--TAGYA---SRFYG---GIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECT 92 (533) Q Consensus 21 ~~~~s~~~p~~~~gas~i~~~~~~~~~--~~~~~---~~~yg---g~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneai 92 (533) =++-..+.|++.-...... .-....+ ...++ ....+ ....+...|..+-|.++.++|.+..||+.+++-+| T Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~w~~~~~s~~~~i~~~~~~lr~RaRdl~rNn~~a~~av~~~~~nvV 79 (530) T protein:vir:38 1 MKIPSLVGPDGKTSLREYA-GYHGGGGGFGGQLRGWNPPSESADAALLPNYSRGNARADDLVRNNGYAANAVQLHQDHIV 79 (530) T ss_pred CccceeecCccccchHHHh-hhhcccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhh Confidence 0111111122100000000 0000000 00000 00000 01236777888999999999999999999999999 Q ss_pred ecCCCCceeeeec--------ccccccHHHHHHHHH-------------HhhhHHHHHHHHHHHhhcCceeEEEeecCCC Q lcl|Aclame:pro 93 IPNENGNIVDVVT--------KDIELAKAILSYLDY-------------VINIEKNAYPIIRNMIKYGDMFLHILEKGSD 151 (533) Q Consensus 93 v~d~~~~~v~v~l--------~~~e~s~si~~~i~~-------------ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k 151 (533) ..+.-=.+ .++. .+.++.+.|.+.|.. +++|..-..-.+|.|++||.+|..+..++.. T Consensus 80 G~Gi~~~~-~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~~~~~~ 158 (530) T protein:vir:38 80 GSFFRLSY-RPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGELCVQATWDSDS 158 (530) T ss_pred CCCceeee-ccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCceEEEeeeccCC Confidence 76442111 1211 122345555444431 4567777788999999999999988876533 Q ss_pred CC-e-eeeEEcCcceeeEEe--------------eccCcE-EEEEecc---cceecccC--CcccccCcccEEEEecCcc Q lcl|Aclame:pro 152 GT-I-EKFQVVSPYIFSKRY--------------NPETDT-WYYVITD---VYRNVVSG--YFNEDIPEEDVIHFSHKID 209 (533) Q Consensus 152 ~g-I-~elr~ldP~~ik~v~--------------d~~g~~-e~y~y~~---~~~~~~~~--~~~~~~~~~dvi~~~~~~~ 209 (533) ++ + +.|+.|+|..|.-.. |..|.. .|+++.. +....... .....++..+|+|+-.... T Consensus 159 g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~vlH~f~~~r 238 (530) T protein:vir:38 159 TRLFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKINDSGAALGYYVSDDGYPGWMAQNWTYIPRELPGGRPSFIHVFEPME 238 (530) T ss_pred CCccceEEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEEeeccCCCccccccceeeeeeccChhHeEeeccccC Confidence 22 1 468999998774222 333332 4555532 21111111 1223456679999875543 Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCC--Cc------------h-hhHHHHHHHHHHHh Q lcl|Aclame:pro 210 TNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGN--VP------------P-DKINEYLTNIAMQY 274 (533) Q Consensus 210 ~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGn--lp------------~-~kAeqy~~~im~~~ 274 (533) -+ ...|+|+|+.++..+++|...++|.+.-...-| .-+.+|.... .. . ..-..+... +..+ T Consensus 239 ~g-Q~RGis~lapvl~~l~~l~~y~dael~~a~i~A--~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 314 (530) T protein:vir:38 239 DG-QTRGANAFYSVMEQMKMLDTLQNTQLQSAIVKA--MYAATIESELDTQSAMDFILGADNKEQQSKLTGWLGE-MAAY 314 (530) T ss_pred CC-cccCCchHHHHHHHHHHHhHHHHHHHHHHHHhh--hheeeeeccCCccccccccccCCcccccccccccchh-hhhc Confidence 32 359999999999999999999999888877655 2233333211 00 0 000011111 1112 Q ss_pred hhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC-CCChH-HHHHHHHHHHHHhcCCCeeeccCCC Q lcl|Aclame:pro 275 KRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLA-EDVEYMLNRLISALKVPKAFIGYEG 352 (533) Q Consensus 275 knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~ 352 (533) .+..+++-.-|.|.. -.-|-+|+.+.-. .-+.. +=++...+.+-.+||||-.-|..+- T Consensus 315 ~~~~~~~l~pG~i~~--------------------L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~ 374 (530) T protein:vir:38 315 YSAAPVRLGGARVPH--------------------LLPGDSLNLQSAQDTDNGYSTFEQSLLRYIAAGLGVSYEQLSRNY 374 (530) T ss_pred ccccceeccCceeee--------------------cCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccc Confidence 222222223333210 1235566666422 12222 3378888889999999999998643 Q ss_pred CccchhhhhHHHHHHHHHHHHHHHHHHHH--------HhhhhhhccCCCcc------c------e---eEEecCCcHHHH Q lcl|Aclame:pro 353 DVNAKNTLATQDIKFNNTIKRIQGFFVEE--------LERMVRMNKEFADQ------D------F---RLVMNRSNSIVE 409 (533) Q Consensus 353 ~~gr~~eI~rde~kF~kfI~rLr~~F~~~--------l~~qLilk~i~t~e------e------w---~~~f~~dn~f~E 409 (533) +-.+=+++.-..+.|-+.+.+.|..|..- +....+++|.+... . | .|..-.-.+.-- T Consensus 375 s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~av~~G~i~~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP 454 (530) T protein:vir:38 375 SQMSYSTARASANESWAYFMGRRKFVASRQACQMFLCWLEEAIVRRVVTLPSKARFSFQEARTAWGNANWIGSGRMAIDG 454 (530) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCccCCCCCCCCchhhHHhhhceeeecCCccccCh Confidence 22222344445667999999999876532 22345678877631 1 1 233334444556 Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCC Q lcl|Aclame:pro 410 GERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRG 489 (533) Q Consensus 410 ~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (533) +||+.-...+++. .+-+..=+...-..=-++..+|.+.-.+. .+..|+..+ ...... T Consensus 455 ~Ke~~a~~~~i~~-----G~~s~~~~~a~~G~D~~~v~~q~a~e~~~-----------------~~~~Gl~~~-~~~~~~ 511 (530) T protein:vir:38 455 LKEVQEAVMLIEA-----GLSTYEKECAKRGDDYQEIFAQQVRESME-----------------RRAAGLNPP-AWAAAA 511 (530) T ss_pred HHHHHHHHHHHHc-----CCCCHHHHHHHcCCCHHHHHHHHHHHHHH-----------------HHHcCCCCC-CCcccc Confidence 6777666555442 11111111111111112223332111111 011121111 011100 Q ss_pred CcccccCCCCCccCCCccCcCcccCCchhhcCCc Q lcl|Aclame:pro 490 RTEFDFGTEGGEELGGELNLGGAFEEFEEETGGG 523 (533) Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 523 (533) +....... +.++++..+|+ T Consensus 512 ~~~~~~~~---------------~~~~~d~~~~a 530 (530) T protein:vir:38 512 FEAGVKKS---------------NEEEQDGARAA 530 (530) T ss_pred cCCCCCCC---------------CCCCCCCCCCC Confidence 00000000 00011111111 No 94 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=99.28 E-value=1.2e-10 Score=75.00 Aligned_cols=442 Identities=10% Similarity=-0.021 Sum_probs=208.7 Q ss_pred hhccccccc---Cc-----------ccCCCCcccCCCCC--ccccchhhcccccCccccchHHHHHHHHHHhhcChhHHH Q lcl|Aclame:pro 19 FLSPMYGMG---AP-----------HGAGGSSMIPINMY--HPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLIST 82 (533) Q Consensus 19 ~~~~~~s~~---~p-----------~~~~gas~i~~~~~--~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~ 82 (533) ++....... +| ...+||+..-..+. .+.. .+... ....+...|..+-|.+..++|.+.. T Consensus 1 m~~~~~r~~~~~a~~~~~~~~~~~~~~y~gA~~~~r~~~~w~~~~-~s~~~----~~~~~~~~lr~RaRdL~rNn~~a~~ 75 (553) T protein:vir:63 1 MTKVTVRKLSEVTSGRPEQSASLGGGGLEGASRLSRETVSWNPSL-RSPDA----LINPLKRIADARGRDMADNDGFTNG 75 (553) T ss_pred CcchhhhhhcccccccchhhhhhhcccccccccCCCcccccccCC-CChHH----HHHHHHHHHHHHHHHHHhcChHHHH Confidence 111110000 00 01222221110000 0000 00000 0123566788899999999999999 Q ss_pred HHHHhhceeeecCCCCceeeeec---------ccccccHHHHHHHH-------------HHhhhHHHHHHHHHHHhhcCc Q lcl|Aclame:pro 83 VLDIIADECTIPNENGNIVDVVT---------KDIELAKAILSYLD-------------YVINIEKNAYPIIRNMIKYGD 140 (533) Q Consensus 83 AId~Ivneaiv~d~~~~~v~v~l---------~~~e~s~si~~~i~-------------~ll~f~~~~~e~~R~wyvDGr 140 (533) ||+.+++.+|..+.-=++ ..+. .+.++.+.|.+.|. ..++|..-..-.+|.|++||. T Consensus 76 av~~~~~nvVG~Gi~~~~-~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE 154 (553) T protein:vir:63 76 AVGYQRDSIVGAQYRLNS-MPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGYVKTGE 154 (553) T ss_pred HHHHHHHhhccCCceeee-ccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHHHhCCc Confidence 999999999965332111 1111 11223333322221 245677777888999999999 Q ss_pred eeEEEeecCCCCCe--eeeEEcCcceeeEEeec--------------cCcE-EEEEec--ccceecccCC--------cc Q lcl|Aclame:pro 141 MFLHILEKGSDGTI--EKFQVVSPYIFSKRYNP--------------ETDT-WYYVIT--DVYRNVVSGY--------FN 193 (533) Q Consensus 141 ~~~~kiid~~k~gI--~elr~ldP~~ik~v~d~--------------~g~~-e~y~y~--~~~~~~~~~~--------~~ 193 (533) +|......+..++- +.|+.|+|..|.--.+. .|.. .|++++ ++..+...+. .. T Consensus 155 ~~~~~~~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~~r~~~~ 234 (553) T protein:vir:63 155 VLATAEWDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYKWKFVQQS 234 (553) T ss_pred eEEEeeeccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEeeccCCCccccccccccceeeeccc Confidence 99888776543322 46889999877433322 2222 355543 4433322211 12 Q ss_pred cccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHH--- Q lcl|Aclame:pro 194 EDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNI--- 270 (533) Q Consensus 194 ~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~i--- 270 (533) ..++..+|+|+-.....+ ...|+|+|+.+++.+++|...+||.+.-...-| --+.+|..+ .|...+.+.+..- T Consensus 235 ~~v~a~~vlH~f~~~r~g-Q~RGis~lapvl~~l~~l~~y~daeL~~a~i~A--~~a~fi~~~-~~~~~~~~~~~~~~~~ 310 (553) T protein:vir:63 235 KPWGRRQVIHILEPREPD-QSRGIADIVSGLKDMRMAKRFKEMSLQNAVINA--SYAAAIESE-LPPEFIHSQMSGGSPN 310 (553) T ss_pred cccChhHheecccccCCC-cccCCchHHHHHHHHHHHhHHHHHHHHHHHHhh--hheeeeecC-CChhhhhhhccccccc Confidence 346778999987654333 258999999999999999999999888887766 334455543 2333333332211 Q ss_pred --------------HHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC-CCChH-HHHHHHH Q lcl|Aclame:pro 271 --------------AMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLA-EDVEYML 334 (533) Q Consensus 271 --------------m~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i-~Dv~Yf~ 334 (533) ...+....+..-.-|.|.. | .-|.+|..+.-. .-+.. +=++... T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~---------------L-----~pGe~i~~~~p~~p~~~~~~F~~~~l 370 (553) T protein:vir:63 311 ADMVGIFGKYMDALKAYVGGANNIQIDGAKIPH---------------L-----FPGTKLNLKPMGTPGGVGSEFEASLN 370 (553) T ss_pred ccccccccccccccccccccccceeecCceeee---------------c-----CCCCeeeecCCCCCCCCHHHHHHHHH Confidence 1111111111111121110 0 124445444321 11222 2277888 Q ss_pred HHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHH--------hhhhhhccCCCccce--------- Q lcl|Aclame:pro 335 NRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEEL--------ERMVRMNKEFADQDF--------- 397 (533) Q Consensus 335 ~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l--------~~qLilk~i~t~eew--------- 397 (533) +.+-.+||||-.-|..+-+-.+=+.+.-..+.|-+.+.++|..|..-| ....+++|.+..-.+ T Consensus 371 r~iaaglGi~Ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a~l~G~i~~p~~~~~~~~~~p 450 (553) T protein:vir:63 371 RHLASAFGMSYEEFTRDFSKANYSSIQAGIAMTRRFLEGRKKMCADRLATEFFTLWLEEAIAAGEVPMPPGQTRDLFYQP 450 (553) T ss_pred HHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccchhhcch Confidence 888999999999988643222223444466679999999998775422 334578887653221 Q ss_pred ---------eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHH-HhhhcccCCCCCccc Q lcl|Aclame:pro 398 ---------RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEV-AEAAGGGGLFDTGGF 467 (533) Q Consensus 398 ---------~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~-i~~E~~~~~~~~~~~ 467 (533) .+..-.-.+.--+||..-...+++.- .-+..=+......=-++..+|.+. ++.-.+.++..+.. T Consensus 451 ~~~~a~~~~~w~~p~~~~iDP~Ke~~A~~~~i~~G-----~~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~- 524 (553) T protein:vir:63 451 LMKEALSKCEWIGASQGQIDQLKETQAAVMRIDAG-----LSTYEREIARLGGDFRKSFAQRAREDALLKKYGLTFNLS- 524 (553) T ss_pred hhhhhhhceeeecCCccccChHHHHHHHHHHHHcC-----CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCCCCC- Confidence 12222333344556655544444321 111111111111111222233211 11111112221110 Q ss_pred ccccchhhhcCccCCcccccCCCcccccCCCCCccCCCc Q lcl|Aclame:pro 468 GEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGE 506 (533) Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (533) |. ...+.+ .+...++.+.+..++++..|| T Consensus 525 -----~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~e 553 (553) T protein:vir:63 525 -----AK---RSLGDG--RDAATGIAEDPAAAQTSQQGE 553 (553) T ss_pred -----Cc---cccCCC--cccCCCCCCCCCCCCcccccC Confidence 00 000000 000000011111111111111 No 95 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=99.28 E-value=1.2e-10 Score=74.98 Aligned_cols=373 Identities=12% Similarity=0.040 Sum_probs=176.5 Q ss_pred hcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCc Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGN 99 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~ 99 (533) |.=+.-...++... .+.+..+.... ..... ++. ++..-|. +.+...|-|.+||+.|++.+-.. T Consensus 1 Mg~~~~~~~~k~~~-~~~~~~~~~~~-~~~~~-~~~-~~~~v~~--------~~~l~~~~v~~~i~~ia~~ia~~----- 63 (383) T protein:vir:10 1 MGLLTPKNFSKRNA-KNMVYPSNPAF-FTTTV-GGM-QLSYVSA--------LSALQNTNVYSVINRIASDVSSA----- 63 (383) T ss_pred CCcccccccccccc-cccccccchhh-hhhhc-cCc-cccccch--------hHhhcchHHHHHHHHHHHhhccC----- Confidence 22111111122111 12222221111 11111 100 0111121 12335789999999999864432 Q ss_pred eeeeecccccccHHHHHHHHH----HhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCcE Q lcl|Aclame:pro 100 IVDVVTKDIELAKAILSYLDY----VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDT 175 (533) Q Consensus 100 ~v~v~l~~~e~s~si~~~i~~----ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~ 175 (533) |+.+.-+. ...+++ .+......+.+++.++++|+.|..++-+ ..++..++|-+|++..+..+-. T Consensus 64 ~~~~~~~~-------~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~-----~~~~~p~~~~~v~~~~~~~~~~ 131 (383) T protein:vir:10 64 HFKTENTA-------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ-----NLEHIPNSDVQINYLPGNMGIV 131 (383) T ss_pred ceeecccc-------hhhhhhCCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC-----ceeEeecCcceEEEEEcCCceE Confidence 22221111 011221 2344556777899999999999987643 3467888888887777655433 Q ss_pred EEEEecccceecccCCcccccCcccEEEEecCcc-cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecC Q lcl|Aclame:pro 176 WYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKID-TNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVD 254 (533) Q Consensus 176 e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~-~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyid 254 (533) .++.+.. ++....+++.+|+|+..... ...+.+|+|.|..|++.+.....++....-+----+-.+-+..++ T Consensus 132 ~~~~~~~-------~~~~~~~~~~evih~r~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~ 204 (383) T protein:vir:10 132 YTVLESN-------DRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTIS 204 (383) T ss_pred EEEEEcC-------CceEEEEcccceEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeC Confidence 3332222 23446678899999964332 223458999999999999998888886543322223233344444 Q ss_pred CCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChHH---H-H Q lcl|Aclame:pro 255 VGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLAE---D-V 330 (533) Q Consensus 255 vGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i~---D-v 330 (533) - .+-..++.+-+++.++++... + +.|.+ + ++ ..|.+++.|.- +..+++ + . T Consensus 205 ~-~~~~~e~~~~~~~~~~~~~~~---~-n~~~~---------~-vl----------~~g~~~~~l~~-~~~d~~~l~e~~ 258 (383) T protein:vir:10 205 N-YLSDGKDLESAREEFEKANTG---D-NSGRL---------M-VL----------PDGFDYTQLEM-KTDVFKALADNS 258 (383) T ss_pred C-CCCCHHHHHHHHHHHHHHhCc---c-ccCCc---------c-cc----------CCCceEEecCC-ChhHHHHHHHHH Confidence 2 332334444444444443211 1 22322 1 22 23667777632 222332 2 3 Q ss_pred HHHHHHHHHhcCCCeeeccCCCCc-cchhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcHHHH Q lcl|Aclame:pro 331 EYMLNRLISALKVPKAFIGYEGDV-NAKNTLATQDIKFNNTIKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVE 409 (533) Q Consensus 331 ~Yf~~kLy~aL~VP~srl~~~~~~-gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E 409 (533) ++-.+.+.+++|||...|+..... ...+.+.....-|.+-+.-+-+.+.+.|...|.. .+|+|+ .+.. T Consensus 259 ~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~eq~~~~~~~~l~P~~~~ie~~l~~~l~~------~~~~f~--~~~l--- 327 (383) T protein:vir:10 259 AYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNA------PDLELD--IKDM--- 327 (383) T ss_pred HHHHHHHHHHhCCCHHHcCCccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCC------ceEEee--chhh--- Confidence 555788999999999999864322 1222333333346666666667777888777642 234443 3222 Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCC Q lcl|Aclame:pro 410 GERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRG 489 (533) Q Consensus 410 ~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (533) ... -...|.+.+..+ + +..-||.++.-. ..+..++.+.+. +....+ .+| T Consensus 328 -~~~-d~~~~~~~~~~~---~-------~~G~~t~nE~R~-----~lg~~p~~~~d~-----------~~~~~~-~~~-- 376 (383) T protein:vir:10 328 -LDV-DDSILINQVSNL---A-------KSGVLGAEQAQF-----ILTRSGFLPDNL-----------PEFKPL-TNE-- 376 (383) T ss_pred -hcc-CHHHHHHHHHHH---H-------hCCCcCHHHHHH-----HhCCCcccCCcc-----------cccCCC-ccc-- Confidence 111 122233333321 1 223456432211 122222211000 000000 000 Q ss_pred CcccccCCCCCccCCCccCcCcccCCchhhcCCccc Q lcl|Aclame:pro 490 RTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEE 525 (533) Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 525 (533) .. ||-+| T Consensus 377 ------------~~-----------------gGd~e 383 (383) T protein:vir:10 377 ------------TK-----------------GGDDK 383 (383) T ss_pred ------------CC-----------------CCCCC Confidence 00 11111 No 96 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=99.27 E-value=9.5e-11 Score=75.54 Aligned_cols=393 Identities=9% Similarity=0.053 Sum_probs=194.0 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~A 83 (533) |-.|.+ +++|-.++... +. ..++.. .+..|+..-+. + .+..+|.|.+| T Consensus 1 MG~~~~-------------~~~~~~~~~~~----~~--~~~~~~-----~~~~g~~~~~~-------~-~al~~~~V~~~ 48 (411) T protein:vir:81 1 MGWWSR-------------LTRFFRPRNET----VD--MTNPLL-----LQWLGVDPDTP-------R-NQLSEATYFAC 48 (411) T ss_pred CchHHH-------------HHhhccCcccc----cc--cchHHH-----HHHhcCcccCh-------h-hhhccHHHHHH Confidence 444422 23332222111 11 112211 11122222221 1 22357899999 Q ss_pred HHHhhceeeecCCCCceeeeeccccc-ccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCe Q lcl|Aclame:pro 84 LDIIADECTIPNENGNIVDVVTKDIE-LAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTI 154 (533) Q Consensus 84 Id~Ivneaiv~d~~~~~v~v~l~~~e-~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI 154 (533) |+.|++.+= ..|+.+--++-+ ........+.++| .-....+.++..++++|+.|..++.+ .+.+ T Consensus 49 v~~Ia~~iA-----~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~--~g~~ 121 (411) T protein:vir:81 49 LKILSESLG-----KLPLKMYQKTERGIVKSDREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYS--GPQL 121 (411) T ss_pred HHHHHHhHh-----hCceeEEEecCCceeeecccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec--CCce Confidence 999997632 112111110000 0001112233433 34567788889999999999988776 4668 Q ss_pred eeeEEcCcceeeEEeeccCcE-----EEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHH Q lcl|Aclame:pro 155 EKFQVVSPYIFSKRYNPETDT-----WYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQ 229 (533) Q Consensus 155 ~elr~ldP~~ik~v~d~~g~~-----e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~Nq 229 (533) .+|.+|+|.+|+++.+..+.. .+|.|... ..+....+++.+|+|+......+ +-+|+|.+..|...+.. T Consensus 122 ~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~eiih~k~~~~~~-~~~G~s~~~~~~~~i~~ 195 (411) T protein:vir:81 122 QALWILPSQYVTIVVDDRGLLGEKNAIWYRYNDP-----YDGKMYVFRNDEILHFKTSVTFD-GITGLSVRDVLKHTVDG 195 (411) T ss_pred EEEEEECCceEEEEEcCcccccccceEEEEEEec-----CCceEEEEccccEEEEcCCCCCC-CcccccHHHHHHHHHHH Confidence 899999999999999876532 23433221 12344568899999997543332 35999999999998888 Q ss_pred HHHHHHHHHHHHHhccccceeeecCC-CCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccc Q lcl|Aclame:pro 230 LRLMEDALMLYRVVRSVDRRVFYVDV-GNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRR 308 (533) Q Consensus 230 Lrm~EdalVIyRi~RAPeRr~fyidv-Gnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR 308 (533) ...+++...-+----+ ++-..+.+ +++-+..+++..+.+...|. -..+.|.+ + .+ T Consensus 196 ~~~~~~~~~~~f~ng~--~p~gil~~~~~l~~e~~~~~~~~~~~~~~----g~~n~g~~---------~-vl-------- 251 (411) T protein:vir:81 196 ALESQKFMNNLYKTGL--TGKAVLEYTGDLNQEARDRLVKGFEQFAN----GSKNAGKI---------I-PV-------- 251 (411) T ss_pred HHHHHHHHHHHHhccC--CCceEEEeCCCCCHHHHHHHHHHHHHHhc----CccccCCc---------e-ec-------- Confidence 8888775443332222 22333333 34555544444444433332 11112222 1 11 Q ss_pred cCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhh Q lcl|Aclame:pro 309 GDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERM 385 (533) Q Consensus 309 ~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~q 385 (533) ..|.+++-|.-. .+.-++-.++..+.+.+++|||...|+...+... +.+.-.-+.|.++ |.-+-.++.+.|.++ T Consensus 252 --~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~-~n~e~~~~~f~~~~l~P~~~~ie~~l~~~ 328 (411) T protein:vir:81 252 --PLGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQINDYEKSSY-ASAEAQNLAFYVDTLLYVLKQYEEEITYK 328 (411) T ss_pred --CCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 124566665321 1223344678899999999999999975443322 2233333446554 556666777888777 Q ss_pred hhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCc Q lcl|Aclame:pro 386 VRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTG 465 (533) Q Consensus 386 Lilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~ 465 (533) |+....+.. ...+.|..+. +.... .+.|.+.+..+ -+..-||..|.-. .++ ++|-+ T Consensus 329 ll~~~~~~~-~~~~~fd~~~----ll~~d-~~~~~~~~~~~----------~~~g~~t~NE~R~-----~~g---l~p~~ 384 (411) T protein:vir:81 329 ILSNDLISQ-GHYFKFNVNV----ILRAD-IKTQMDSLSTA----------VQNGIMTPNEARD-----YLD---MPADD 384 (411) T ss_pred cCChhhcCC-CcEEEeechh----hhccC-HHHHHHHHHHH----------HhCCCcCHHHHHH-----HhC---CCCCC Confidence 775544332 2234554433 22111 22344433332 1223456433211 112 22222 Q ss_pred ccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccC Q lcl|Aclame:pro 466 GFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELN 508 (533) Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (533) +-|+-..+. ...|++.. + .+.+.||| + T Consensus 385 ggD~~~~~~-----n~~pl~~~--------~--~~~~kgGd-~ 411 (411) T protein:vir:81 385 YGNNLMANG-----NYIPLSML--------G--ANYGKGGD-S 411 (411) T ss_pred CCCeeeecc-----Cccchhhh--------h--hhhccCCC-C Confidence 212111111 11121111 1 12223444 1 No 97 >protein:vir:101418 Length: 569 # NCBI annotation: Prt # Family: family:all:9458 # MgeID: mge:1512 # MgeName: P1 # Cross-refs: genbank:acc:YP_006480;genbank:gi:46401636;genbank:GeneID:2777482 Probab=99.26 E-value=8.2e-11 Score=75.88 Aligned_cols=469 Identities=18% Similarity=0.194 Sum_probs=249.2 Q ss_pred CCCcchh----hhhhhHHHHHHhhc---------cccccc-CcccCCCCcccCCCCCccccchhhc-ccccC---ccccc Q lcl|Aclame:pro 1 MPSLEKY----KKLNEAVNFTNFLS---------PMYGMG-APHGAGGSSMIPINMYHPFATAGYA-SRFYG---GIEFN 62 (533) Q Consensus 1 ~~~~~~w----~k~de~~~~~~~~~---------~~~s~~-~p~~~~gas~i~~~~~~~~~~~~~~-~~~yg---g~~~n 62 (533) +.|++.= -|+.-.+ +..|++ -++|.+ +|-..++--..++....-.+.+..- +.+-+ ....| T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~p~~~~~~~~~~~~~~t~~~D~~~~g~~~~~~~~~~pr~ 86 (569) T protein:vir:10 8 LSSVRKALAGVFKDNGER-DNILLSALAVHGGSGYLFSRAGAPVQLSGFLGGKPGDSGMAGDGLVDGSRFIFDEVQLPED 86 (569) T ss_pred HHHHHHHHhhhhhcCCcc-chhhhhhheeecCcceEEeecCcchhhhhhhccCccccchhhhhHHHHHHHHhhhccCchh Confidence 1111100 0000000 111111 122222 2222222111111100000100000 00000 22368 Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCC-Cceeeeec------ccccccHHHHHHHHH-Hhh-hHHHHHHHHH Q lcl|Aclame:pro 63 RFFLYDMYDRMDYTDPLISTVLDIIADECTIPNEN-GNIVDVVT------KDIELAKAILSYLDY-VIN-IEKNAYPIIR 133 (533) Q Consensus 63 ~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~-~~~v~v~l------~~~e~s~si~~~i~~-ll~-f~~~~~e~~R 133 (533) +.|.+-.|.+|. .+|-|.+|+..+|--|...++. ++.|.|.- .+-+..+++..++.+ +.. |++.++.+.+ T Consensus 87 R~qiY~~~eeM~-~~p~Ia~AlniHVtaALggde~TGd~vfI~p~~~~~~a~~daakai~~el~~dl~~~iNr~~~~lA~ 165 (569) T protein:vir:10 87 RLQRYPLLEEMA-VYSTIATALNIHITHALSFDKKTGQTFSIVPVHNGNDSDYDAAQALCGELMNDIGRTINKEVAGWAF 165 (569) T ss_pred HHHHHHHHHHHh-cCchhhhhhhhhhheeecccccccceEEEEeecCCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHH Confidence 999999999997 5999999999999999987776 78887742 222344455555544 333 5899999999 Q ss_pred HHhhcCceeEEEeecCCCCCeeeeEE----cCcceeeEEeeccCcEE-EE-EecccceecccC-----CcccccC----- Q lcl|Aclame:pro 134 NMIKYGDMFLHILEKGSDGTIEKFQV----VSPYIFSKRYNPETDTW-YY-VITDVYRNVVSG-----YFNEDIP----- 197 (533) Q Consensus 134 ~wyvDGr~~~~kiid~~k~gI~elr~----ldP~~ik~v~d~~g~~e-~y-~y~~~~~~~~~~-----~~~~~~~----- 197 (533) ...+.|..|--+.-+ ++.||+.+.. +||. |++. +.-++.- |+ .|....+..-+- -...++| T Consensus 166 ~~~aFGdsYaRiY~~-~~~GV~dl~~s~yt~Psf-IqpF-E~g~~tvGF~~~~~~~~~~ti~~l~p~qm~rmKmPrm~~i 242 (569) T protein:vir:10 166 IMSVFGVAYVRPYAK-EGIGITSFECSYYTLPSF-IKEF-EVSGNLAGFSGDYLKDASGKMVFADPWAIIPMKIPYWRPK 242 (569) T ss_pred HHHhhhhhheeeecc-CCceeEEEEecccccccc-cchh-hhcCceEEeecccCCccccceeeechhhhhhhcccceeec Confidence 999999999887665 4679988753 3333 3222 1111111 11 111111100000 0111222 Q ss_pred ----cccEEEEecCcccCc--------ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHH Q lcl|Aclame:pro 198 ----EEDVIHFSHKIDTNF--------FPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINE 265 (533) Q Consensus 198 ----~~dvi~~~~~~~~d~--------~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeq 265 (533) |-+.-+....+.+|. .++|.|||..|-+||-+|+.---+|---|+--|.--++.-+-.-.||+.+..+ T Consensus 243 ~q~~~v~~g~~~~~L~~d~~~~~Pi~psn~GgSFL~~ae~pf~~l~~Al~sL~~qri~dSv~~~~Itlnm~gM~p~qr~~ 322 (569) T protein:vir:10 243 SNLMPVHTGHKAYSLLDNPEERTPIETQNYGTSLLEYAYEPYMNLRSAIRSLKATRFNASKIDRIIGLAMNSLDPVKAAD 322 (569) T ss_pred cccchhhhhhhheeecccccccccccchhhhhHHHHHHHhHHHHHHHHHHhccchhhHHHHHhHHhhccccCCCHHHHhH Confidence 112222222222221 25899999999999999999888888888888888888888888999999999 Q ss_pred HHHHHHHHhhhcee--ecc-CCCeeecccccchhhhHHhhhhcccccCCC-cceeeecCC-CCCChHHHHHHHHHHHHHh Q lcl|Aclame:pro 266 YLTNIAMQYKRDYW--VRN-NQNQFLGIDNYFSIESILKDYFIPRRGDRR-AVEIDILQG-SKVDLAEDVEYMLNRLISA 340 (533) Q Consensus 266 y~~~im~~~knk~v--yd~-~tGei~d~~~~~n~~smleDywlprR~g~~-gtEi~TLpG-~nlg~i~Dv~Yf~~kLy~a 340 (533) |++.+-..-|+..- =++ ..|+-.-.+.+ --||.=+.++ +..|+|=.+ ++.-.|+||...-|.|--| T Consensus 323 y~r~lt~~LKr~~d~ie~a~~gg~~~~~~~~---------H~LPv~gekq~~~tvDt~~~~A~~~gIEdvM~~~R~Laga 393 (569) T protein:vir:10 323 YSRTITQTLKRAADLMERRARGANNMPTVTN---------TLLPIMGDGKGQMTIDTQTIQADINGIEDILTYMRQLAAA 393 (569) T ss_pred HHHHHHHHHHHHHHHHHHHhccCccccccce---------eeeeeecCccccccccccccccCcccHHHHHHHHHHHHhh Confidence 99998777666221 122 23322111111 1356666666 444544333 2566899999999999999 Q ss_pred cCCCeeeccCCC----CccchhhhhHHHHHH---HHHH-HHHHHHHHHHHhhhhhh--ccCCCccc--eeEEecCCcHHH Q lcl|Aclame:pro 341 LKVPKAFIGYEG----DVNAKNTLATQDIKF---NNTI-KRIQGFFVEELERMVRM--NKEFADQD--FRLVMNRSNSIV 408 (533) Q Consensus 341 L~VP~srl~~~~----~~gr~~eI~rde~kF---~kfI-~rLr~~F~~~l~~qLil--k~i~t~ee--w~~~f~~dn~f~ 408 (533) ||+-.|.|+--+ +.|.|.-+-- -..- +.+| +.+...|..++-..+-. ++++.++| |+++|++.+.=. T Consensus 394 LGlD~SMlGwAD~LsGGLGeGG~frt-SaQaa~RS~~iRqa~~e~in~iidiH~~fKYgevf~~~drP~~V~F~s~~tAl 472 (569) T protein:vir:10 394 LGLDYTLLGWADQMSGGLGEGGFLRT-AIQAAMRASWIQQGVEEFIQRAIDIHLAFKYGKVYPEGDRPYKIEFHSVNTAL 472 (569) T ss_pred hccchhHhhHHHHhcccccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccCCCCcceEEEeccchHHH Confidence 999999997432 3343321111 0000 1111 12223355565555543 46888774 999999999988 Q ss_pred HHHHHHHHHHHHHHHHHh-------hh--hh--hH---HHHHHHHhcCChhhhHHHHHHhhhcccCCCCCccccc----- Q lcl|Aclame:pro 409 EGERFAVIEQRIGIAERL-------KG--WV--RE---DWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGE----- 469 (533) Q Consensus 409 E~ke~ei~~~R~~~~~~~-------~p--yv--gk---~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~----- 469 (533) |-.+.+-..+|++.++-+ +. -. ++ .|+-+.+|.|... +.+.+-+|.+.. ++.++ T Consensus 473 ~~E~~~n~~~raN~a~i~~Q~la~l~e~n~Lg~de~~m~y~l~d~~~~De~---~~e~l~ae~~ak----p~DEe~~~~~ 545 (569) T protein:vir:10 473 QQEHNDNRDSQANYATIVTQILDAVSNNSVLANSDAFKRYLFSDVLEIDEK---ISEALVNELKAK----SEDDDHLMDS 545 (569) T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHhhcchh---HHHHHHhhcCCC----cchhHHHHHH Confidence 888888888888766544 22 11 22 3666666666432 233445554332 12222 Q ss_pred --ccchhhhcCccCCcccccCCCcccccCCCCC Q lcl|Aclame:pro 470 --ETTPADFLGERGSPIESPRGRTEFDFGTEGG 500 (533) Q Consensus 470 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (533) .++| +++...-.. -+.-|.+.+ T Consensus 546 ~~~~~~-~~~~~~~~~--------~~~~~~~~~ 569 (569) T protein:vir:10 546 IIKTPP-QELAQILES--------VFKEGNDND 569 (569) T ss_pred HhcCCh-HHHHHHHHH--------HhhccCCCC Confidence 1122 111110000 011111111 No 98 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=99.23 E-value=1.9e-10 Score=73.89 Aligned_cols=335 Identities=15% Similarity=0.145 Sum_probs=172.1 Q ss_pred CCCceeeeecccccccHHHHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeE Q lcl|Aclame:pro 96 ENGNIVDVVTKDIELAKAILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSK 167 (533) Q Consensus 96 ~~~~~v~v~l~~~e~s~si~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~ 167 (533) -...|+.|- ++.+.. ...+.++|+ -....+.++..|+++|+.|..++.+. .+-+.+|..|+|.+|++ T Consensus 1 ia~lp~~~~-~~~~~~---~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~-~G~~~~L~~l~~~~v~~ 75 (348) T protein:vir:93 1 MASLPLKMY-EDYKVV---NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI-YHQPSKLFLLNPDVVEM 75 (348) T ss_pred CcccceEeE-ecCcCc---ccHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECC-CCcEEEEEEEcCCceEE Confidence 112233322 121222 223344443 34567788889999999999887764 34488999999999999 Q ss_pred EeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccc Q lcl|Aclame:pro 168 RYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVD 247 (533) Q Consensus 168 v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPe 247 (533) +.+..+...+|.|... .+....+++.+|+|+.+....+ +-+|+|.+..|...+.....++... +....+. T Consensus 76 ~~~~~~~~~~y~~~~~------~g~~~~~~~~eiih~r~~~~~~-~~~G~s~~~~~~~~i~~~~~~~~~~-~~~~~~~-- 145 (348) T protein:vir:93 76 LIENQSRELYYSIHAA------TGNKLIVHNMDMLHFKHIVASN-MVQGISPIDVLKNTTDFDNAVRTFN-LTEMQKP-- 145 (348) T ss_pred EEeCCCcEEEEEEEcC------CCeEEEEccccEEEecCCCCCC-ceeeccHHHHHHHHHHHHHHHHHHH-HHhcCCC-- Confidence 9998887766655332 2334568899999998644433 2489999999888877666666543 2333322 Q ss_pred ceeeecCCC-CCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCCh Q lcl|Aclame:pro 248 RRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDL 326 (533) Q Consensus 248 Rr~fyidvG-nlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~ 326 (533) ..+.+.++ ++-+.+++...+.+...| .++ |.+. .+ ..|.+++.|. -+..+ T Consensus 146 -~~~i~~~~~~l~~e~~~~~~~~~~~~~------~n~-~~~~----------vl----------~~g~~~~~l~-~~~~d 196 (348) T protein:vir:93 146 -DSFMLKYGSNVSTEKRQQVLEDFKQYY------EEN-GGIL----------FQ----------EPGVEIEPLP-KKYVS 196 (348) T ss_pred -ceeEEecCCCCCHHHHHHHHHHHHHHh------hcC-CCee----------ec----------CCCceEEEcC-CChhH Confidence 24555554 555555555444443332 322 3321 11 1356666663 12222 Q ss_pred ---HHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccceeEEec Q lcl|Aclame:pro 327 ---AEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFRLVMN 402 (533) Q Consensus 327 ---i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~~~f~ 402 (533) ++=.+|..+.+++++|||...++..++...+ .+....+.|.+ -|.-+.+++++.|.+.|+..-... ....|.|. T Consensus 197 ~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~-~~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~~~~-~g~~i~fd 274 (348) T protein:vir:93 197 EDIVASENLTRERVANVFQLPSIFLNARSNTNFA-KNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDRE-KNRYFKFN 274 (348) T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccc-CcceEEee Confidence 2335578899999999999999865443222 22222334544 456666677777777766432111 11124444 Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCC Q lcl|Aclame:pro 403 RSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGS 482 (533) Q Consensus 403 ~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (533) .+. +.... ++.|.+++..+ -+..-||..|.-. .++-.++ ++-|+=.. ..... T Consensus 275 ~~~----l~~~d-~~~~a~~~~~~----------~~~G~~T~NE~R~-----~~g~~p~---~ggD~~~~-----~~n~~ 326 (348) T protein:vir:93 275 VKS----YLRAD-SATQAEVYFKA----------VRSGYYTINDIRE-----WEDLPPV---EGGDKPLI-----SGDLY 326 (348) T ss_pred chh----hhccC-HHHHHHHHHHH----------HhCCCCCHHHHHH-----HhCCCCC---CCcCeEee-----ccccc Confidence 332 22221 34455555442 1223466533221 1232222 22121111 11122 Q ss_pred cccccCCCcccccCCCCCccCCCccCcCcccCCchhhcC Q lcl|Aclame:pro 483 PIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETG 521 (533) Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 521 (533) |+..+.... ....||+-|-+ + | T Consensus 327 ~~~~~~~~~--------~~~~gg~~n~~----~-----~ 348 (348) T protein:vir:93 327 PIDTPLELR--------KSLKGGDKNVN----E-----S 348 (348) T ss_pred ccccchhhc--------ccccCCCCCcC----C-----C Confidence 333321110 11122221110 0 0 No 99 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=99.22 E-value=1.5e-10 Score=74.44 Aligned_cols=380 Identities=13% Similarity=0.159 Sum_probs=187.0 Q ss_pred cchhhhhhhHHHHHHhhccccccc-CcccCCCCcccCCCCCccc--------------cchhhcccccCcccc--chHHH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMG-APHGAGGSSMIPINMYHPF--------------ATAGYASRFYGGIEF--NRFFL 66 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~-~p~~~~gas~i~~~~~~~~--------------~~~~~~~~~ygg~~~--n~~~l 66 (533) |-|| |.+||++ +|.....+.++.-+-.+|. +....+....+|... ..... T Consensus 1 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 67 (409) T protein:vir:83 1 MGFW-------------SNLFGIPSIPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWSGYPESWATPSW 67 (409) T ss_pred Cchh-------------hhhcccccCCCcccccccccccCCCCceeeccCCCcchhhhhcccccccccccccccccccCc Confidence 5555 5678873 5555443333322211110 000000011111100 00000 Q ss_pred HHHHHHHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh--------hhHHHHHHHHHHHhhc Q lcl|Aclame:pro 67 YDMYDRMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI--------NIEKNAYPIIRNMIKY 138 (533) Q Consensus 67 i~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvD 138 (533) ...-++.+...|-|..||+.|++.+=. .|+.+-- +.+..+ ....+| .-....+.++..+++ T Consensus 68 ~~~t~~~~~~~~~v~acV~~Ia~~iA~-----lpl~~~~-~~~~~~----~~~~ll~~~PN~~~t~~~f~~~l~~~lll- 136 (409) T protein:vir:83 68 GSAQDKLRTLIDVAWACIDLNASVLSS-----MPIYRMR-NGRIID----SVAWMSNPDPEVYTSWQEFAKQLFWDFQL- 136 (409) T ss_pred cccchhhHhhhHHHHHHHHHHHHhhcc-----CceEEee-CCcccc----chhhhcccCCCCCCCHHHHHHHHHHHHhh- Confidence 001112233468999999999976321 1222211 111111 122222 233445666777777 Q ss_pred CceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccch Q lcl|Aclame:pro 139 GDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRS 218 (533) Q Consensus 139 Gr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s 218 (533) |+.|..++..+..+-+.+|..|+|.+|++..+..+. .+|.++.. ..+.+|+|+......+. -||+| T Consensus 137 Gnay~~~i~r~~~G~~~~L~pl~p~~v~v~~~~~g~-~~y~~~~~------------~~~~eiiHir~~~~~~~-~~G~s 202 (409) T protein:vir:83 137 GEAFVLPMAHGSDGYPIRFRVVPPWLVNVELKKGAR-REYRIGGL------------NVTDEILHIRYQGNTAD-AHGHG 202 (409) T ss_pred CCcEEEEEEECCCCcEEEEEEECCcceEEEEcCCce-EEEEEccc------------cCccceEEeCCCCCCCC-ccccc Confidence 999988876554556889999999999988887664 34444322 12468999975444332 48999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCC-CCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhh Q lcl|Aclame:pro 219 YLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIE 297 (533) Q Consensus 219 ~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvG-nlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~ 297 (533) -|+.|...+..-...++... +...---+....+.+. .|-+.++++..+.+...+. .+.|.. + T Consensus 203 pi~~~~~~i~~~~a~~~~~~--~~f~nga~p~gil~~~~~ls~e~~~~~~~~~~~~~~------~nag~~---------~ 265 (409) T protein:vir:83 203 PLESAAPRQVVIGLLQKYVQ--NLAETGGVPLYWLGVERRLSETEAVDLMDRWIESRS------KYAGHP---------A 265 (409) T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhcCCCcceEeecCCCCCHHHHHHHHHHHHHhhC------CccCcc---------c Confidence 99999888887777777432 2233223444444443 4555556555555544331 123321 1 Q ss_pred hHHhhhhcccccCCCcceeeecCCCCCChHHHHHHHHHHHHHhcCCCeeeccCCCCccch--hhhhHHHHHHHH-HHHHH Q lcl|Aclame:pro 298 SILKDYFIPRRGDRRAVEIDILQGSKVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAK--NTLATQDIKFNN-TIKRI 374 (533) Q Consensus 298 smleDywlprR~g~~gtEi~TLpG~nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~--~eI~rde~kF~k-fI~rL 374 (533) +++ +|..-++..++....+.-++-.+|-.+.+.++.+||...|+..++.++. +.+....+.|.+ -|.-+ T Consensus 266 -il~-------~g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVPp~llg~~~~~~~~tysn~eq~~~~f~~~tL~P~ 337 (409) T protein:vir:83 266 -LVT-------GGATLNQAKSMSAQDLSLMELTQFNEARIAILLGVPPFLVGLPGATGSLTYSNIEQLFSFHDRSSLRPK 337 (409) T ss_pred -eec-------CCcccccccCCCHHHHHHHHHHHhhHHHHHHHhCCCHHHccCCCCccccccccHHHHHHHHHHHHHHHH Confidence 121 1211122222211112222334555677999999999999865444332 224444444655 44555 Q ss_pred HHHHHHHHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHh Q lcl|Aclame:pro 375 QGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAE 454 (533) Q Consensus 375 r~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~ 454 (533) -+++++.|.+.|+..+ +.+.|..+ .+....+ ..|.+.++.+- +..-||..|.=.. T Consensus 338 ~~~ie~~l~~~Ll~~~------~~~~f~~~----~llr~d~-~~r~~~~~~~~----------~~G~lT~NE~R~~---- 392 (409) T protein:vir:83 338 ATAVMAALDRWALPSP------QHLELNRD----DYTRPSL-VERATAYKIMI----------EAGVMEPNEARAM---- 392 (409) T ss_pred HHHHHHHHHHhhCCCC------cEEEeehh----hhhccCH-HHHHHHHHHHH----------hCCCcCHHHHHHH---- Confidence 5677777777776443 23555443 3333332 45666555421 3345675443221 Q ss_pred hhcccCCCCCcccccccchhhhcCccCC Q lcl|Aclame:pro 455 AAGGGGLFDTGGFGEETTPADFLGERGS 482 (533) Q Consensus 455 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (533) | +++|.++-| .+.+.+. T Consensus 393 -~---glpp~~ggd-------~l~~~gv 409 (409) T protein:vir:83 393 -E---RLHSEAAAV-------RLSGGGV 409 (409) T ss_pred -h---CCCCCCCCc-------ccCCCCC Confidence 1 233322211 1111111 No 100 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.22 E-value=1.3e-10 Score=74.76 Aligned_cols=447 Identities=10% Similarity=0.022 Sum_probs=207.2 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCccc-CCCC-CccccchhhcccccCccccchHHHHHHHHHHhhcCh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMI-PINM-YHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDP 78 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i-~~~~-~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~P 78 (533) ||.+.-=...+-..-...+.. . ..|++.. .... -.|... +... -...+...|..+-|.++.++| T Consensus 3 ~p~~~~~~~~~~~~~~~~~~~-y--------~~~a~~~~~~~~~w~p~~~-s~~~----~~~~~~~~lr~RaRdl~rNn~ 68 (533) T protein:vir:34 3 TPTIPTLLGPDGMTSLREYAG-Y--------HGGGSGFGGQLRSWNPPSE-SVDA----ALLPNFTRGNARADDLVRNNG 68 (533) T ss_pred CchhhhhhcccccchHHHHHh-h--------hhccCCCCCcccccccCCC-CHHH----HHHHHHHHHHHHHHHHHhcCh Confidence 332211111111000000000 0 0011000 0000 000000 0000 012356678889999999999 Q ss_pred hHHHHHHHhhceeeecCCCCcee----eeecc---cccccHHHHHHHH-------------HHhhhHHHHHHHHHHHhhc Q lcl|Aclame:pro 79 LISTVLDIIADECTIPNENGNIV----DVVTK---DIELAKAILSYLD-------------YVINIEKNAYPIIRNMIKY 138 (533) Q Consensus 79 EV~~AId~Ivneaiv~d~~~~~v----~v~l~---~~e~s~si~~~i~-------------~ll~f~~~~~e~~R~wyvD 138 (533) .+..||+.+++.+|..+..=.+. .+.++ +.++.+.|...|. .+++|..-..-.+|.|++| T Consensus 69 ~a~~av~~~~~nvVG~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~~~~d 148 (533) T protein:vir:34 69 YAANAIQLHQDHIVGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHAFN 148 (533) T ss_pred HHHHHHHHHHHHhhCCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHHHHhC Confidence 99999999999999765432111 01111 2234444433332 2456777777889999999 Q ss_pred CceeEEEeecCCCCC--eeeeEEcCcceeeEEe--------------eccCcE-EEEEecc--c-ceecccC--Cccccc Q lcl|Aclame:pro 139 GDMFLHILEKGSDGT--IEKFQVVSPYIFSKRY--------------NPETDT-WYYVITD--V-YRNVVSG--YFNEDI 196 (533) Q Consensus 139 Gr~~~~kiid~~k~g--I~elr~ldP~~ik~v~--------------d~~g~~-e~y~y~~--~-~~~~~~~--~~~~~~ 196 (533) |.+|..+..++..++ =+.|+.|+|..|.--. |..|.. .|+++.. . ....... .....+ T Consensus 149 GE~f~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v 228 (533) T protein:vir:34 149 GELFVQATWDTSSSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQINDSGAALGYYVSEDGYPGWMPQKWTWIPRELPG 228 (533) T ss_pred CceEEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCceEeeeEECCCCCeEEEEEeecCCCCccccccceeeeeecc Confidence 999999887754442 1468999998774322 222322 3555431 1 1111111 112335 Q ss_pred CcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCC--Cc-------------hh Q lcl|Aclame:pro 197 PEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGN--VP-------------PD 261 (533) Q Consensus 197 ~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGn--lp-------------~~ 261 (533) +...|+|+-...--+ ...|+|.|+.++..+++|...+||.+.-..+-| .-+.+|.... .. .. T Consensus 229 ~a~~VlH~f~~~r~g-Q~RGis~lapvl~~l~~l~~y~dael~~a~i~A--~~a~fi~~~~~~~~~~~~~~~~~~~~~~~ 305 (533) T protein:vir:34 229 GRASFIHVFEPVEDG-QTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKA--MYAATIESELDTQSAMDFILGANSQEQRE 305 (533) T ss_pred ChhHeeeeccccCCC-cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh--hheeeeecCCCcccccccccCCCcccccc Confidence 567899987654333 359999999999999999999999988887766 3344443221 00 00 Q ss_pred hHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC-CCCh-HHHHHHHHHHHHH Q lcl|Aclame:pro 262 KINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDL-AEDVEYMLNRLIS 339 (533) Q Consensus 262 kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~-i~Dv~Yf~~kLy~ 339 (533) ....+.......+.. ...+-.-|.|. . | .-|.+|+.+.-. .-+. .+=++...+.+-. T Consensus 306 ~~~~~~~~~~~~~~~-~~~~l~pG~i~---------~------L-----~pGe~i~~~~~~~p~~~~~~f~~~~lr~iAa 364 (533) T protein:vir:34 306 RLTGWIGEIAAYYAA-APVRLGGAKVP---------H------L-----MPGDSLNLQTAQDTDNGYSVFEQSLLRYIAA 364 (533) T ss_pred cccccchhhhhccCc-ceeeccCceee---------e------c-----CCCCeeeecCCCCCCCCHHHHHHHHHHHHHh Confidence 011111111111110 00001111110 0 0 124455555322 1222 2337777888899 Q ss_pred hcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHH--------HhhhhhhccCCCc------cc------e-- Q lcl|Aclame:pro 340 ALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEE--------LERMVRMNKEFAD------QD------F-- 397 (533) Q Consensus 340 aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~--------l~~qLilk~i~t~------ee------w-- 397 (533) +||||-+-|..+-+-.+=+++.-..+.|.+++.++|..|..- +....+++|.++. +- | T Consensus 365 glGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~ail~G~i~~p~~~~~~~~~~~~~~~~ 444 (533) T protein:vir:34 365 GLGVSYEQLSRNYAQMSYSTARASANESWAYFMGRRKFVASRQASQMFLCWLEEAIVRRVVTLPSKARFSFQEARSAWGN 444 (533) T ss_pred hcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCccCCCchhhHHhhhc Confidence 999999999865322233344446677999999999876532 3344567887763 11 1 Q ss_pred -eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhh Q lcl|Aclame:pro 398 -RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADF 476 (533) Q Consensus 398 -~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~ 476 (533) .|..-.-.+.--+||+.-...+++. ..-+..=+...-..=-++..+|.+. |.. ..++ T Consensus 445 ~~w~~p~~~~iDP~Ke~~a~~~~i~~-----G~~s~~~~~a~~G~D~~ev~~q~a~---e~~--------------~~~~ 502 (533) T protein:vir:34 445 CDWIGSGRMAIDGLKEVQEAVMLIEA-----GLSTYEKECAKRGDDYQEIFAQQVR---ETM--------------ERRA 502 (533) T ss_pred eeeccCCccccChHHHHHHHHHHHHc-----CCCCHHHHHHHcCCCHHHHHHHHHH---HHH--------------HHHh Confidence 2333344444566766655544432 1111111111111101122233211 110 0111 Q ss_pred cCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCC Q lcl|Aclame:pro 477 LGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGG 522 (533) Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 522 (533) .|+..+- .|... ...|.. +...++.++..|+ T Consensus 503 ~gl~~~~--~~~~~--~~s~~~-----------~~~~~~~~~~~~~ 533 (533) T protein:vir:34 503 AGLKPPA--WAAAA--FESGLR-----------QSTEEEKSDSRAA 533 (533) T ss_pred cCCCCCC--CCCcC--ccCCCC-----------CCCCCCcccCCCC Confidence 2221110 01000 000000 0011111111111 No 101 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=99.22 E-value=5.1e-10 Score=71.54 Aligned_cols=450 Identities=12% Similarity=0.123 Sum_probs=190.8 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccC------------------CCC-------cccCCCCCccccchhhcccc Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGA------------------GGS-------SMIPINMYHPFATAGYASRF 55 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~------------------~ga-------s~i~~~~~~~~~~~~~~~~~ 55 (533) |.-||-. ...||++-+|.. .|. ..++....+|. +| T Consensus 1 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~ 60 (535) T protein:vir:10 1 MAILKDL-------------RNAFSLSNKKSTSYIELGDYDKDIVNKAIRPGRASARDTVDGIDIADGNVA-------GQ 60 (535) T ss_pred ChhhHHH-------------HHHHHhhhhhhhhhHHHhhhhHHHHHhhhhhhhhhhhccccccccccCCcc-------cc Confidence 2222211 123344333320 000 11122111111 11 Q ss_pred cC-ccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeec------CCCCceeeeecccc--cccHHHH---HHHHHHhh Q lcl|Aclame:pro 56 YG-GIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIP------NENGNIVDVVTKDI--ELAKAIL---SYLDYVIN 123 (533) Q Consensus 56 yg-g~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~------d~~~~~v~v~l~~~--e~s~si~---~~i~~ll~ 123 (533) +. ...+|. .-...++.++...|-|..+|+++++.+-++ ........|.+.+. ..+...+ ..+.++|. T Consensus 61 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~~i~t~~~~va~~~~i~~~s~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~lL~ 139 (535) T protein:vir:10 61 YSVASISDV-LSTKKLLKAYADNDIVQAIIRTRTNQVLTYSNPSRYNRNGVGFKVELKDATKVMSKAQIKRAHEIEDFIY 139 (535) T ss_pred cccCccccc-cCHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhcccCcceeEEEeccCCCcchhhhhhhHHHHHHH Confidence 11 112222 224567777777899999998888763211 11122233333322 2222221 22334442 Q ss_pred ------------hHHHHHHHHHHHhhcC-ceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCc---EEEEEecccceec Q lcl|Aclame:pro 124 ------------IEKNAYPIIRNMIKYG-DMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETD---TWYYVITDVYRNV 187 (533) Q Consensus 124 ------------f~~~~~e~~R~wyvDG-r~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~---~e~y~y~~~~~~~ 187 (533) |...++.+++..|+.| ..|..++-+ ..+-+.+|.+|||.+|++..+..+. ..||.|... T Consensus 140 ~~PN~~~~~~~~~~~~~~~lv~d~l~~~g~ay~~i~r~-~~G~~~~L~~l~p~~V~v~~d~~~~~~~~~~~~~~~~---- 214 (535) T protein:vir:10 140 NTGSEYYEWRDTFPRLLTKIINDMYVQDQINIERIFKN-DSNELDHFNAVDASKVVISYSPRSKDQPRKFEQFVSE---- 214 (535) T ss_pred hCCCCCCChhHHHHHHHHHHHHHHHhhCCceEEEEEEC-CCCcEEEEEEeCCceeEEEEcCccccCceEEEEEecC---- Confidence 2234555555555555 556655544 4566899999999999999887664 456655432 Q ss_pred ccCCcccccCcccEEEEecCcccCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHH Q lcl|Aclame:pro 188 VSGYFNEDIPEEDVIHFSHKIDTNF--FPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINE 265 (533) Q Consensus 188 ~~~~~~~~~~~~dvi~~~~~~~~d~--~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeq 265 (533) .....++++++||+......+. +.||+|-|..|.+.+.....+++...-+----+-.+-|+.++-. +.....++ T Consensus 215 ---~~~~~~~~~eiih~~~~~~~~~~~~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~ng~~p~giL~~~~~-~~~~ls~e 290 (535) T protein:vir:10 215 ---TKSVKFSERNLTFINYWNLSDTDRRGYGYSPVEASIPLIRAIYDTEQFNARFFSQGGTTRGILVIDQD-GDAQANQM 290 (535) T ss_pred ---ceeEEECcccEEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCC-CCcccCHH Confidence 3345678899999987554442 45899999999999999998887443322222222344554432 11111122 Q ss_pred HHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 266 YLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKV 343 (533) Q Consensus 266 y~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~V 343 (533) -.+.+...++...--..+.|.+ .+++ +.|.++.-|.-. .+.-++-.++..+.+.++.|| T Consensus 291 ~~e~lk~~~~~~~~G~~nag~~----------~vl~---------~~g~~~~~l~~~~~D~qfle~~~~~~~eIa~afgV 351 (535) T protein:vir:10 291 MLAGIRRQWTSQGSGLGGAWKI----------PILA---------AKDAKFVNMTQNSRDMEFDKFLNFMIYDTAAIFQM 351 (535) T ss_pred HHHHHHHHHHHHhcCccccccc----------cccc---------CCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCC Confidence 2233333332211111112221 1221 124455544321 122234456788999999999 Q ss_pred CeeeccCCCCc--cch------hhh--hHHHHH-HHH-HHHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcHHHHHH Q lcl|Aclame:pro 344 PKAFIGYEGDV--NAK------NTL--ATQDIK-FNN-TIKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGE 411 (533) Q Consensus 344 P~srl~~~~~~--gr~------~eI--~rde~k-F~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~k 411 (533) |...|+..+.. ++. ... ..+... |.+ -+.-+.+++.+.|-+.|+. ..+.+|.|..+. +. T Consensus 352 Pp~~lG~~~~at~sn~~~~~~~~~~s~~E~~~~~~~~~~L~P~l~~ie~~ln~~Ll~-----~~~~~~~f~f~~----l~ 422 (535) T protein:vir:10 352 QPEEINFPNNGGSTGKSGTKSVNEGSTAKAKLESSKDKGLTPLLSFIEQVINDKIMR-----YVDTDYRFSFTL----GD 422 (535) T ss_pred CHHHhccccCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----ccCCeEEEEecc----cc Confidence 99999865432 111 011 111222 322 3555666677777776653 223334443222 11 Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCccccc--ccchhhhcCccCCcccccCC Q lcl|Aclame:pro 412 RFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGE--ETTPADFLGERGSPIESPRG 489 (533) Q Consensus 412 e~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 489 (533) ... ...|.++...+ ... -||..|+-. .++-.++ ++-|. -+.+..+.- .+.+...|.. T Consensus 423 ~~d-~~~r~~~~~~~---------~~g--~lT~NE~R~-----~~gl~pi---egGD~~~~~~~~~~~~-~~~~~~~~~~ 481 (535) T protein:vir:10 423 AQD-KLQEEQVWKLK---------LAN--GYFINEYRK-----DHGLKTV---DGLDVPGFIGSAENFI-NATGFGQPNV 481 (535) T ss_pred ccC-HHHHHHHHHHH---------HcC--CCCHHHHHH-----HhCCCCC---CCccccccccchhhcc-cccccccccC Confidence 111 12333333221 112 256533221 1222222 11110 000000000 0000111111 Q ss_pred CcccccCCCCCccCCCccCcCcccCCchhhcCCccc-CCCCCCC---C Q lcl|Aclame:pro 490 RTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEE-ELPFPEE---E 533 (533) Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~---~ 533 (533) +.. .++.+..-++-+-+...+...+..+|-+. .+|.|+. + T Consensus 482 p~~----~~~~~~~~~~~~~q~~~~~~~~~~~g~~~~~~~~~~~~~~~ 525 (535) T protein:vir:10 482 PDS----SDDSGSTLGERERQERIQHSKDYEKGKDDPKSPLPKPSESD 525 (535) T ss_pred CCC----CCCccccCCccccCcccccccccccCCCCCCCCCCcCCCCC Confidence 100 00111111110111111111222222222 1222221 1 No 102 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=99.21 E-value=5.6e-10 Score=71.31 Aligned_cols=405 Identities=11% Similarity=0.098 Sum_probs=182.8 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~A 83 (533) ||+|+++. ..+.+.-.....++....+.+ |+..... +.+.|.|-+| T Consensus 1 m~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~----g~~~~~~----------Al~~~~V~~c 46 (417) T protein:vir:38 1 MKLFRGLA--------------------TEVDPHWADHLLDSGVIPSFR----GGYLGIS----------ALRNSDVLTA 46 (417) T ss_pred Cccccccc--------------------cCCCccchhhhcccccccccC----Cceechh----------hcccHHHHHH Confidence 33332111 001011000000111111111 1222111 2357899999 Q ss_pred HHHhhceeeecCCCCceeeeecccc-cccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCe Q lcl|Aclame:pro 84 LDIIADECTIPNENGNIVDVVTKDI-ELAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTI 154 (533) Q Consensus 84 Id~Ivneaiv~d~~~~~v~v~l~~~-e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI 154 (533) |+.|++.+-. .|+.+--.+. +..+. ..+..+| ......+..+..+++.|+.|..++-|...+.+ T Consensus 47 v~~ia~~iA~-----lp~~~~~~~~~~~~~~--~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~ 119 (417) T protein:vir:38 47 VSIVSGDVSR-----FPLVITDSSTDEVIDL--ANIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEP 119 (417) T ss_pred HHHHHHhhcc-----CeeEEEEcCCcceecc--chHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEE Confidence 9999976331 1222211110 11110 1222333 34557777888999999999998876544448 Q ss_pred eeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 EKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLME 234 (533) Q Consensus 155 ~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~E 234 (533) ..|.+|+|..+.+.++..++..| .|+.. .+.....+++.+|+|+.+...++ -+|+|-|..|.+.+.....++ T Consensus 120 ~~l~~l~p~~v~v~~~~~~~~~y-~~~~~-----~~~~~~~~~~~dviH~r~~~~d~--~~G~s~l~~~~~~i~~~~~~~ 191 (417) T protein:vir:38 120 AMFEFYAPSQTQVDTSDPDNIIY-RFTPY-----NSSMQKVCGFEDVIHWKFFSYDT--IMGRSPLLSLGDEIGLQESGV 191 (417) T ss_pred EEEEEeCCceEEEEEcCCCeEEE-EEEEc-----CCcEEEEecCcceEEecCCCCCC--ccccCHHHHHHHHHHHHHHHH Confidence 88999999999988877665443 33322 12333456788999998654443 479999999999888877777 Q ss_pred HHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcc Q lcl|Aclame:pro 235 DALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAV 314 (533) Q Consensus 235 dalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gt 314 (533) ....-+=---+..+-++..+ |.+-+.++++..+.+...| --+ +.|.+. .+ + .|. T Consensus 192 ~~~~~~f~ng~~p~~il~~~-~~l~~e~~~~~~~~~~~~~----~g~-n~g~~~----------vl-----~-----~g~ 245 (417) T protein:vir:38 192 STLQKFFKSGLKGSIIKAKE-SRLSAEARQKIREDFERAQ----AGA-DAGSPI----------IV-----D-----ATM 245 (417) T ss_pred HHHHHHHhccCCCcEEEEeC-CCCCHHHHHHHHHHHHHHh----ccc-ccCCce----------ec-----c-----CCc Confidence 74332211112223333333 3454444444333332222 111 223321 11 1 244 Q ss_pred eeeecC--CCCCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccC Q lcl|Aclame:pro 315 EIDILQ--GSKVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKE 391 (533) Q Consensus 315 Ei~TLp--G~nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i 391 (533) +++.|. ...+.-++--+|-...+.+++|||...|+..+.+ +.+....+.|.+ -|.-+-+++.+.|...|+.... T Consensus 246 ~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~---s~~e~~~~~~~~~tl~P~~~~ie~~l~~~Ll~~~~ 322 (417) T protein:vir:38 246 DYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQNSPN---QSVKQLADDYIRNDLPFYFEPITSEFELKLLDDAQ 322 (417) T ss_pred eEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHhCCCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhh Confidence 555442 1112223345555778999999999999843322 233333334554 2444444566667766654322 Q ss_pred CCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCccccccc Q lcl|Aclame:pro 392 FADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEET 471 (533) Q Consensus 392 ~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~ 471 (533) . ..+.+.|..++. .++. .. ++...+ +..-||..|.-. .++-.++. .++.|+=. T Consensus 323 ~--~~~~~~fd~~~l-~~~~-----~~--~~~~~~-----------~~G~~T~NE~R~-----~~gl~pi~-~g~~d~~~ 375 (417) T protein:vir:38 323 R--HQYCIGFDTKSV-NGLP-----IA--DVNTAV-----------NGGLWTGNEGRA-----ELGKKPLK-DPNMDRIQ 375 (417) T ss_pred c--ccceEEechhhh-hHHH-----HH--HHHHHH-----------hCCCcCHHHHHH-----HhCCCCCC-CCCCCeee Confidence 1 234566643322 1111 01 111111 235567543321 12222221 11112111 Q ss_pred chhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccC Q lcl|Aclame:pro 472 TPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEE 526 (533) Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (533) .+ .-..|+......+ -......-||+-|-+ .-...+|+++.. T Consensus 376 ~~-----~n~~~~d~~~~~~----~~~~~~~kgg~~~~~----~~~~~~~~~~~~ 417 (417) T protein:vir:38 376 ST-----LNTVFLDQKEAYQ----AEHAAELKGGDTNAK----GNQNGSGTNANS 417 (417) T ss_pred ec-----ccccccccccccc----cccccccCCCCCCCC----CCCcCCCCcCCC Confidence 11 1111222111100 011112223332221 112223333333 No 103 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=99.15 E-value=9.2e-10 Score=70.11 Aligned_cols=376 Identities=10% Similarity=0.020 Sum_probs=181.2 Q ss_pred hcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCc Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGN 99 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~ 99 (533) |.=+..+...+...... +... .+.......++. .+..-| .+.+.+.|-|.++|+.|++.+-.. T Consensus 1 Mg~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~-~~~~v~--------~~~al~~~~v~~~i~~ia~~ia~~----- 63 (385) T protein:vir:10 1 MGLLTPRNFNKRKAKNM-VYPS--NPAFFTTTVGGM-QLSYVS--------ALSALQNTNVYSVINRIASDVASA----- 63 (385) T ss_pred Cccccchhccccccccc-cccc--chhhhhhhcccc-CccccC--------HHHhhccHHHHHHHHHHHHHHhhC----- Confidence 33221222112211111 1111 111111111100 011112 223446789999999999875432 Q ss_pred eeeeecccccccHHHHHHHHH----HhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCcE Q lcl|Aclame:pro 100 IVDVVTKDIELAKAILSYLDY----VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDT 175 (533) Q Consensus 100 ~v~v~l~~~e~s~si~~~i~~----ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~ 175 (533) |+.+.-+. ...+++ .+.-....+.+++.++++|+.|..++-+ ..++..++|-+|+++.+..+-. T Consensus 64 p~~v~~~~-------~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~-----~~~~~p~~~~~v~~~~~~~~~~ 131 (385) T protein:vir:10 64 HFKTENTA-------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ-----NLEHIPNSDVQINYLPGNMGIV 131 (385) T ss_pred ceeeeccc-------hhhhhhcCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC-----ceeEeecCCceEEEEEcCCceE Confidence 22221110 111222 2234556777888999999999987643 3568889999998887766533 Q ss_pred EEEEecccceecccCCcccccCcccEEEEec-CcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecC Q lcl|Aclame:pro 176 WYYVITDVYRNVVSGYFNEDIPEEDVIHFSH-KIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVD 254 (533) Q Consensus 176 e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~-~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyid 254 (533) .+|.+. .++....+++++|+|+.. +.....+-+|+|.|..|++.++....+++...-+----+-.+-++.++ T Consensus 132 ~~~~~~-------~~~~~~~~~~~eiihik~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~ 204 (385) T protein:vir:10 132 YTVLES-------NDRPQMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTIS 204 (385) T ss_pred EEEEEc-------CCceEEEEccccEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeC Confidence 333221 123446688999999975 333223458999999999999999988885544432333334444444 Q ss_pred CCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC--CCChH-HHHH Q lcl|Aclame:pro 255 VGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--KVDLA-EDVE 331 (533) Q Consensus 255 vGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--nlg~i-~Dv~ 331 (533) -+-..+ ++.+-+++.+++.... .+.|.+ + .+ ..|.+++.|.-. .+..+ +-.+ T Consensus 205 ~~~~~~-e~~~~~~~~~~~~~~~----~n~~~~---------~-vl----------~~g~~~~~l~~~~~d~~~l~e~~~ 259 (385) T protein:vir:10 205 NYLSDG-KDLESAREEFEKANTG----DNSGRL---------M-VL----------PDGFDYTQLEMKTDVFKALADNSA 259 (385) T ss_pred CCCCCH-HHHHHHHHHHHHHhCc----cccCCc---------c-cc----------CCCceEEecCCChhHHHHHHHHHH Confidence 222233 3333344444443211 122322 1 12 135677766322 12223 2346 Q ss_pred HHHHHHHHhcCCCeeeccCCCCc-cchhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcHHHHH Q lcl|Aclame:pro 332 YMLNRLISALKVPKAFIGYEGDV-NAKNTLATQDIKFNNTIKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEG 410 (533) Q Consensus 332 Yf~~kLy~aL~VP~srl~~~~~~-gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ 410 (533) |-.+.+.++++||...|+..... ...+.+.....-|..-+.-+-+++.+.|...|+. + +++|++. ++ T Consensus 260 ~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~~~~~~l~P~~~~ie~~l~~~l~~-----~-~~~f~~~------~l 327 (385) T protein:vir:10 260 YSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNA-----P-DLELDIK------DM 327 (385) T ss_pred HHHHHHHHHhCCCHHHcCCccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----c-eEEeech------hh Confidence 66788999999999999864322 2223343333445555666666777778777642 2 3444322 23 Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCC Q lcl|Aclame:pro 411 ERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGR 490 (533) Q Consensus 411 ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (533) .... +..|.+.+..+- +..-||..|.-. .++..++++.+. +....|... T Consensus 328 l~~d-~~~~~~~~~~~~----------~~G~~T~NE~R~-----~~g~~p~p~~~~---------------~~~~~~~~~ 376 (385) T protein:vir:10 328 LDVD-DSALINQVSNLA----------KSGVLGAEQAQF-----ILTRSGFLPDNL---------------PEFKPLTTQ 376 (385) T ss_pred hccC-HHHHHHHHHHHH----------hCCCcCHHHHHH-----HhCCCccCCCCC---------------ccccCcccc Confidence 2222 233444444321 223456433211 122233333211 111111110 Q ss_pred cccccCCCCCccCCCccCcC Q lcl|Aclame:pro 491 TEFDFGTEGGEELGGELNLG 510 (533) Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~ 510 (533) ..||+-|=+ T Consensus 377 -----------~~~g~~~dn 385 (385) T protein:vir:10 377 -----------VKGGDEGDN 385 (385) T ss_pred -----------cCCCCCCCC Confidence 001110000 No 104 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=99.13 E-value=1.2e-09 Score=69.57 Aligned_cols=392 Identities=16% Similarity=0.153 Sum_probs=181.2 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) |--|.+|++... ....+.+. .+.++..+.... ...|..+. ..|.| T Consensus 1 Mg~~~~f~~k~~-------------------~~~~~~~~---------~~~~~~~~~~~~------~~~~~~~~-~~~~V 45 (403) T protein:vir:80 1 MGLFNFFRRKTR-------------------SEPTNAIS---------WFLTQEAYDTLA------IPGYTRLS-DNPEV 45 (403) T ss_pred Cccccccccccc-------------------ccccchhh---------hhcccccccccc------cchhhhhh-hhHHH Confidence 544444443210 00000000 001111111111 22234454 47999 Q ss_pred HHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhh--------hHHHHHHHHHHHhhc--CceeEEEeecCC Q lcl|Aclame:pro 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVIN--------IEKNAYPIIRNMIKY--GDMFLHILEKGS 150 (533) Q Consensus 81 ~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~--------f~~~~~e~~R~wyvD--Gr~~~~kiid~~ 150 (533) .+||+.|++.+=.. |+.+--...+-...+...+..+|+ -....+..+..++.+ |+.|..+..+. T Consensus 46 ~~~I~~ia~~iA~~-----p~~~~~~~~~g~~~~~~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~- 119 (403) T protein:vir:80 46 RMAVHKIAELISSM-----TIHLMQNTDNGDIRIKNELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTT- 119 (403) T ss_pred HHHHHHHHHhhhhC-----ceEEEEecCCceeecCChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcC- Confidence 99999998763211 111110000111111122333332 233445566677774 77887766543 Q ss_pred CCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHH Q lcl|Aclame:pro 151 DGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQL 230 (533) Q Consensus 151 k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqL 230 (533) .+-+.+|..|+|.+|+++.+..+..-+ |+ ...+++++|+||..+.....+-+|+|.+..+...++.. T Consensus 120 ~g~~~~L~~l~p~~v~~~~~~~g~~~~--y~-----------~~~~~~~eiih~~~~~~~~~~~~G~s~~~~~~~~i~~~ 186 (403) T protein:vir:80 120 SGLIDELIPLAPSKVSFVDTDTGYQIW--YQ-----------GKAYNYDEVLHFIVNPDPEKPYMGRGYRVVLKDIVNNL 186 (403) T ss_pred CCcEEEEEEEcCCeeEEEEcCCceEEE--Ee-----------ecccchhhEEEEeccCCCcCccccccHHHHHHHHHHHH Confidence 345889999999999998887764322 21 12466789999985443333347999999999999999 Q ss_pred HHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccC Q lcl|Aclame:pro 231 RLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGD 310 (533) Q Consensus 231 rm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g 310 (533) ...++...-+----+-.+-++.++ +.+....+++..+.+..+|..- + ++|.+.. +| -.+ T Consensus 187 ~~~~~~~~~~~~ng~~p~~il~~~-~~~~~~~~~~~~~~~~~~~~~~---~-~~g~~~~---------------~~-~~~ 245 (403) T protein:vir:80 187 KQATTTKKSFMSGKYMPSLIVKVD-AATAELSSEEGRNAVFKKYLEA---S-EAGQPWI---------------IP-AEL 245 (403) T ss_pred HHHHHHHHHHHhccCCcceEEEeC-CCCChHHHHHHHHHHHHHHhhh---h-hcCCeee---------------ec-ccc Confidence 888886654443333333344444 2344455555555555444311 1 1232211 11 011 Q ss_pred CCcceeeecCCCCCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhc Q lcl|Aclame:pro 311 RRAVEIDILQGSKVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMN 389 (533) Q Consensus 311 ~~gtEi~TLpG~nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk 389 (533) ..+.+++-|.--.+.-++-.++-...+.++++||...|+. ++.++ .+. ..|.++ |.-+-.++.+.|.+.|+ T Consensus 246 ~~~~~~~~l~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-~~~~~---~~~--~~f~~~~l~P~~~~ie~~l~~kll-- 317 (403) T protein:vir:80 246 LDVEQVKPLSLKDLAIHETVELDKRTVAGIFGVPAFLLGV-GKYDK---DEY--NNFINSTILPIAKGIEQELTRKLL-- 317 (403) T ss_pred cccceeccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHcCC-CCccH---HHH--HHHHHHHHHHHHHHHHHHHHHhcc-- Confidence 2234444342223433455678888899999999999963 22222 111 124432 33344556666666554 Q ss_pred cCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCccccc Q lcl|Aclame:pro 390 KEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGE 469 (533) Q Consensus 390 ~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~ 469 (533) ++.++.|.|..+.. -... ...|.+.+..+ -+..=||..|.-. .++ ++|-++-|+ T Consensus 318 ---~~~~~~~~f~~~~l----l~~d-~~~~~~~~~~~----------~~~Gi~t~NE~R~-----~~g---l~p~~ggd~ 371 (403) T protein:vir:80 318 ---ISPDLYFKFNPRSL----YAYD-LKELAEVGSNM----------YVRGLMEGNEVRD-----WLG---LSPKEGLSE 371 (403) T ss_pred ---CCCCcEEEeechhh----hccC-HHHHHHHHHHH----------HhCCCcCHHHHHH-----HhC---CCCCCCCCe Confidence 55667677654432 1111 33445544432 1223455433211 111 222122121 Q ss_pred ccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccC Q lcl|Aclame:pro 470 ETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEE 526 (533) Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (533) -..+. -..|++ .-.+....-|||-| ++... .+ T Consensus 372 ~~~~~-----n~~pl~---------~~~~~~~~k~ge~~--~~~~~---------~~ 403 (403) T protein:vir:80 372 LVILE-----NYIPLD---------KIGDQNKLKGGEKG--GADGQ---------TD 403 (403) T ss_pred Eeecc-----cccchh---------hccchhhccCCCCC--CCCCC---------CC Confidence 11111 111111 00001112223210 11111 11 No 105 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=99.10 E-value=2.1e-09 Score=68.12 Aligned_cols=405 Identities=11% Similarity=0.047 Sum_probs=185.9 Q ss_pred cccccCcccCCCCcccCCCCCccccchhhcccc--cCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCce Q lcl|Aclame:pro 23 MYGMGAPHGAGGSSMIPINMYHPFATAGYASRF--YGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNI 100 (533) Q Consensus 23 ~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~--ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~ 100 (533) ||.-..+....+.+ ..+.... .+...++. .+|..-|. . .+.+.|-|.+||+.|++.+=. .| T Consensus 1 ~~~~r~~~~~~~~~--~~~~~~~--~~~~~g~~~s~~~~~vt~-------~-~al~~~~v~~~v~~ia~~iA~-----lp 63 (419) T protein:vir:14 1 MFFSRQLLSNLGQT--QMSAGGW--VSALLGSSRSDSGQVVTP-------A-SALALTVLQNCVTLLAESIAQ-----LP 63 (419) T ss_pred Cccccccccccccc--ccCcchh--hHHhhcCCCccCCcccch-------H-HhhccHHHHHHHHHHHHhhcc-----Cc Confidence 44332222222222 1111111 11111111 11221121 1 233578999999999987321 22 Q ss_pred eeeecccccccHHHH-HHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeec Q lcl|Aclame:pro 101 VDVVTKDIELAKAIL-SYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNP 171 (533) Q Consensus 101 v~v~l~~~e~s~si~-~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~ 171 (533) +.|--.+-+-...+. ..+.++| .-....+..+..+++.|+.|..++.+. .+-+.+|.+|+|.+|.+..+. T Consensus 64 ~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~-~G~~~~l~pl~~~~v~v~~~~ 142 (419) T protein:vir:14 64 IELYERSGEDRKPATDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDS-DGVIQGLYPLDNEAVTVMRGS 142 (419) T ss_pred eEEEEecCCccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECC-CCcEEEEEEecCceEEEEECC Confidence 222111101111111 1233333 234466777889999999998877654 345889999999999998887 Q ss_pred cCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceee Q lcl|Aclame:pro 172 ETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVF 251 (533) Q Consensus 172 ~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~f 251 (533) .+...|. ++.. ..++.++|+|+.+...++ -+|+|-|..|...+.....+++...-+----+-.+-++ T Consensus 143 ~~~~~y~-~~~~----------~~~~~~~i~h~~~~~~dg--~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil 209 (419) T protein:vir:14 143 DLKPVYR-VRGS----------DPMPQRLVHHVRWMSING--YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVI 209 (419) T ss_pred CceEEEE-EccC----------cccchhheeEecCcCCCC--cccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEE Confidence 7754433 2211 125678899987655544 48999999999988888888774443332334345555 Q ss_pred ecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC--CCChHHH Q lcl|Aclame:pro 252 YVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--KVDLAED 329 (533) Q Consensus 252 yidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--nlg~i~D 329 (533) ..+-. +...+-++-.+.+...++.+.--..+.|.+. ++ ..|.+++.|.=. .+.-++- T Consensus 210 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~----------vl----------~~g~~~~~l~~~~~d~q~~e~ 268 (419) T protein:vir:14 210 ERPKD-APALKDQASVDRITDGWNAKFGGSGNAKKVA----------LL----------QEGMTFRPLSMTNVDAALIDA 268 (419) T ss_pred EecCC-CCcccCHHHHHHHHHHHHHHhcCccccCCce----------ec----------CCCceEEEccCChhhHHHHHH Confidence 55432 2211112222333333332221112223221 12 124566666321 1222344 Q ss_pred HHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcHHH Q lcl|Aclame:pro 330 VEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIV 408 (533) Q Consensus 330 v~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~ 408 (533) .++..+.+.+++|||...++...+.. .+.+....+.|..+ |.-+-+++.+.|.+.|+..... ..+.+.|..+.. T Consensus 269 ~~~~~~~Ia~~fgVpp~~lg~~~~~t-~s~~E~~~~~f~~~~L~P~~~~ie~~l~~kll~~~~~--~~~~i~fd~~~l-- 343 (419) T protein:vir:14 269 LRLSALDIARIYKIPAHMVNELERAT-FSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSER--KQYFIEYNLAGL-- 343 (419) T ss_pred HHHHHHHHHHHhCCCHHHhcCCCCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccc--CCeEEEEechhh-- Confidence 56788999999999999998543321 12232233345442 3334445556666655533221 234566654443 Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccC Q lcl|Aclame:pro 409 EGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPR 488 (533) Q Consensus 409 E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (533) .. .-+..|.+.++.+ -+..-||..|.-. .++..++ ++-|+-..|.. .-....|-+.|. T Consensus 344 --~r-~d~~~~~~~~~~~----------~~~G~~T~NE~R~-----~~gl~p~---~gGD~~~~~~n-~~~~~~~~~~~~ 401 (419) T protein:vir:14 344 --LR-GDQSSRYAAYAVG----------RQWGWLSINDIRR-----LENMPPV---KGGDIYLSPMN-MVDASKPQQLPV 401 (419) T ss_pred --hc-cCHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCC---CCcCeeeeccc-cccccccccccC Confidence 11 1234455555442 1334466533321 2233222 22222222211 001111111111 Q ss_pred CCcccccCCCCCccCCCccCcCcccCCchhhcCCcccCCC Q lcl|Aclame:pro 489 GRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELP 528 (533) Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 528 (533) +. .+....+..++|-- +- T Consensus 402 ~~--~~~~~~~~~e~~~~--------------------l~ 419 (419) T protein:vir:14 402 GK--SEPTKAAIDEIGRI--------------------LS 419 (419) T ss_pred CC--CCCccccccchhcc--------------------cC Confidence 10 00000011111111 11 No 106 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=99.04 E-value=4.4e-09 Score=66.40 Aligned_cols=406 Identities=12% Similarity=0.096 Sum_probs=191.7 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~A 83 (533) |-+|.+. . ..|.....+..++. ..+... .....+... ....++..+|.|.+| T Consensus 1 Mg~~~~~-------------~--~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~--------~~~~~~~~~~~v~~~ 52 (423) T protein:vir:81 1 MGFLQKL-------------G--LAPSVVATPEPIEL--VGPIFE---SLKLSTKNM--------TVEQIWEDQPHLRTV 52 (423) T ss_pred CchhHhh-------------c--cccccccCcccccc--cccccc---ccccccchh--------hHHHHHHhhhHHHHH Confidence 2222222 1 12222222222221 111111 010001111 233444568999999 Q ss_pred HHHhhceeeecCCCCceeeeecccccc-cHHHH-HHHHHHh-------hhHHHHHHHHHHHhhcCceeEEEeecCC-CCC Q lcl|Aclame:pro 84 LDIIADECTIPNENGNIVDVVTKDIEL-AKAIL-SYLDYVI-------NIEKNAYPIIRNMIKYGDMFLHILEKGS-DGT 153 (533) Q Consensus 84 Id~Ivneaiv~d~~~~~v~v~l~~~e~-s~si~-~~i~~ll-------~f~~~~~e~~R~wyvDGr~~~~kiid~~-k~g 153 (533) |+.|++.+=. .|+.|--.+.+- .+.+. ..+.+|| .-....+..+..+++.|+.|..+..|.. ... T Consensus 53 i~~ia~~ia~-----lp~~~~~~~~dg~~~~~~~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~~~ 127 (423) T protein:vir:81 53 TTFIARNVAS-----LQLQAFERVEDGGRERVREGHLARVCKLANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVDTP 127 (423) T ss_pred HHHHHHhHhh-----CceEEEEEecCCceeeeccchHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcCcc Confidence 9999976321 122221000000 00111 1122333 3455677788899999999987766532 234 Q ss_pred eeeeEEcCcceeeEEeeccC-cEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 154 IEKFQVVSPYIFSKRYNPET-DTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRL 232 (533) Q Consensus 154 I~elr~ldP~~ik~v~d~~g-~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm 232 (533) +..|+.+++..+++.....+ ...+|.+.... ...+....+++++|||+..-...+. .+|+|-+..|.+.+..... T Consensus 128 ~~~l~p~~~~~v~~~~~~~~~~~~~Y~~~~~~---~~~g~~~~~~~~evih~r~~~~~~~-~~G~spi~~~~~~i~~~~~ 203 (423) T protein:vir:81 128 TLDIRPIPVSWVQRRAYKDGWGSLDYIIIESG---DNDGRSVKVPGERVIHRHGYNPKTM-KRGKSPVQSLRDILGEQIE 203 (423) T ss_pred eEEEeecccceeeeeeccCCCcceEEEEEEec---CCCceEEEEcccceEEecCCCCCCc-cccccHHHHHHHHHHHHHH Confidence 66788888887766554443 23444443221 1123345678899999974333332 3899999999999888888 Q ss_pred HHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhcee-eccCCCeeecccccchhhhHHhhhhcccccCC Q lcl|Aclame:pro 233 MEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYW-VRNNQNQFLGIDNYFSIESILKDYFIPRRGDR 311 (533) Q Consensus 233 ~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~v-yd~~tGei~d~~~~~n~~smleDywlprR~g~ 311 (533) +++...-+=---+..+-++..+-...|.+-.++-.+.+..+++.... .-.++|.+. .|+ T Consensus 204 ~~~~~~~~f~ng~~p~gvi~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~n~g~~~----------vl~---------- 263 (423) T protein:vir:81 204 AAIFRAQMWRNGPRPGMVIMRDPESKAGKWDAESRTRFMANLRASFSPKSSDVGGTL----------LLE---------- 263 (423) T ss_pred HHHHHHHHHhccCCCceEEEecCcccCccCCHHHHHHHHHHHHHHhccccccCCcce----------ecC---------- Confidence 87753322112233444555554443333334444445555544331 222344431 121 Q ss_pred CcceeeecCCCCCChHHH---HHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 312 RAVEIDILQGSKVDLAED---VEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVR 387 (533) Q Consensus 312 ~gtEi~TLpG~nlg~i~D---v~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLi 387 (533) .|.+++.|.= +..++.- .++-...+.+++|||...++..++. ..+.+......|..+ |.-+-.++.+.|...|+ T Consensus 264 ~g~~~~~l~~-s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~~~~~-t~sn~e~~~~~f~~~~L~P~~~~ie~~l~~~L~ 341 (423) T protein:vir:81 264 DGMKAENFHT-TSKDEQTVETTKLSLQTVAQVYGINPTMVGQLDNA-NYSNVREFRKALYGDNLGSWIRIIQDVMNLFLL 341 (423) T ss_pred CCceEEeccC-ChhhHHHHHHHHhhHHHHHHHhCCCHHHhcCCCCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhc Confidence 2455555521 2222222 3566778999999999999753222 223344444557775 66666778888888887 Q ss_pred hccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCh-hhhHHHHHHhhhcccCCCCCcc Q lcl|Aclame:pro 388 MNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPY-DLKPQEEVAEAAGGGGLFDTGG 466 (533) Q Consensus 388 lk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~td-e~~~q~~~i~~E~~~~~~~~~~ 466 (533) .+-....+...+.|..+. +.... ++.|.+.+..+ ..+..-||. |..+. ++ ++|-++ T Consensus 342 ~~~~~~~~~~~~~fd~~~----llr~d-~~~r~~~~~~~---------l~~~G~~T~NE~R~~------~g---l~p~~g 398 (423) T protein:vir:81 342 PRVGIDNEKFYFEFNLEE----KLRAS-FEEAAEIKRAA---------VGNVAWMTINEVRAM------DN---LPSIDG 398 (423) T ss_pred CccccccCccEEEecchh----hhccC-HHHHHHHHHHH---------HhCCCCcCHHHHHHH------hC---CCCCCC Confidence 554343444456664443 22222 23444444331 112334665 33221 22 222222 Q ss_pred cccccchhhhcCccCCcccccCCCccc Q lcl|Aclame:pro 467 FGEETTPADFLGERGSPIESPRGRTEF 493 (533) Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (533) -|+=..|. + -..++.-+.|..+++| T Consensus 399 GD~~~~p~-n-~~~~~~~~~~~~~~~t 423 (423) T protein:vir:81 399 GDDLARPL-N-TEFGDSEDAPGEEVET 423 (423) T ss_pred cceeeccc-c-cccCccCCCCCCCCCC Confidence 22111111 0 0001110111111111 No 107 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=99.01 E-value=3.1e-09 Score=67.20 Aligned_cols=350 Identities=14% Similarity=0.142 Sum_probs=160.7 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~A 83 (533) |..|- -|.. ..+..+.+ ..+.-. .++..+.+..-|. + .+.++|-|.++ T Consensus 1 M~~~~----------------~f~~-----r~~~~~~~-~~~~~~--~~~~~~~~~~v~~-------~-~al~~~av~~c 48 (359) T protein:vir:10 1 MSILN----------------PFER-----RSSITPNN-YYPFMV--QNGSIVPNSLVDA-------T-EALKNSDLYAV 48 (359) T ss_pred Ccccc----------------hhhc-----cccCCCCc-chhhhh--ccccccCCcccCH-------H-HhhcchHHHHH Confidence 22221 1211 11111111 001000 0111111111121 1 23457899999 Q ss_pred HHHhhceeeecCCCCceeeeecccccccHHHHHHHHH----HhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEE Q lcl|Aclame:pro 84 LDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDY----VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQV 159 (533) Q Consensus 84 Id~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~----ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ 159 (533) |+.|++.+= ++.+.+ ......++. .+.-....+.+++.++.+|+.|..++-+. .+-+.+|.+ T Consensus 49 v~~ia~~ia---------~~p~~~----~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-~g~~~~l~~ 114 (359) T protein:vir:10 49 TSLISSDIA---------GTRFIG----NQVFTSVLNNPSHLTNAFSFWQTAILNLLLNGNVFLAILKGD-NSLMKELRL 114 (359) T ss_pred HHHHHHhhh---------cCcccc----chHHHHHhhcccccCCHHHHHHHHHHhccccCceEEEEEECC-CCeEEEEEE Confidence 999987532 122211 111122221 12223456778888999999999877653 344789999 Q ss_pred cCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcc---cCcccccchhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 160 VSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKID---TNFFPYGRSYLESARAIWNQLRLMEDA 236 (533) Q Consensus 160 ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~---~d~~~~g~s~L~~Aik~~NqLrm~Eda 236 (533) |+|.+|++..+.. ..+|.|+.. ..+....+++.+|+|+..... ...+-+|+|.|+.+...+.....+++. T Consensus 115 l~~~~v~i~~~~~--~~~y~~~~~-----~~~~~~~~~~~evih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~ 187 (359) T protein:vir:10 115 IPSNAITIDLTDD--TLTYEVNQF-----DDYPSAKYNASEMIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRL 187 (359) T ss_pred eCCceEEEEEcCC--eEEEEEEec-----CCceEEEEcccceEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHH Confidence 9999998766543 344544322 134456788899999975322 112348999999999999888888874 Q ss_pred HHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCccee Q lcl|Aclame:pro 237 LMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEI 316 (533) Q Consensus 237 lVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi 316 (533) ..-+=---+-.+-++.++-|.+.+..+++ +++-..++.. -.+.|++. +|+ .|.++ T Consensus 188 ~~~~f~ng~~~~gil~~~~~~l~~e~~~~-~~~~~~~~~~----~~n~g~~~----------vl~----------~g~~~ 242 (359) T protein:vir:10 188 SLSTLKGALNPTSVVKVPQGTLSSEAKDS-IRKEFEKANG----GNNSGRVM----------VLD----------QSADF 242 (359) T ss_pred HHHHHhccCCcceEEEeCCCCCCHHHHHH-HHHHHHHHhC----ccccCCce----------ecC----------CCcce Confidence 43222111212445555545555444433 3333344321 01223321 121 24555 Q ss_pred eecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCc Q lcl|Aclame:pro 317 DILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMVRMNKEFAD 394 (533) Q Consensus 317 ~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qLilk~i~t~ 394 (533) +.|.=. .+.-++-.+|-...+.+++|||...|+..++.. +..+.-|-.+..|+...-..+.+.|...|-.+ +-.+ T Consensus 243 ~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~--~~~~~~e~~~~~~l~~~l~p~~~~l~~~l~~~-~~~~ 319 (359) T protein:vir:10 243 STVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQQ--SSLDQIKDLYVNALNRFIEPLISELRIKCDSS-IGVD 319 (359) T ss_pred eeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccc Confidence 555211 122234567778899999999999997433221 22222233334443322222222233332211 1111 Q ss_pred cceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCC Q lcl|Aclame:pro 395 QDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLF 462 (533) Q Consensus 395 eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~ 462 (533) ...-+.|. .++. |.++...+ +-.-||..|.= +.++-+|+- T Consensus 320 ~~~~~~~d-----~~~~-------~~~~~~~~-----------~~G~~t~NE~R-----~~l~~~pv~ 359 (359) T protein:vir:10 320 MSPITDYS-----NSVF-------KADILNWV-----------KEGIIEPTEAK-----TLLESKGII 359 (359) T ss_pred chhhhhcC-----HHHH-------HHHHHHHH-----------hCCCcCHHHHH-----HHhCCCCCC Confidence 11111111 1111 11111111 11234532211 112222222 No 108 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=99.00 E-value=6.7e-09 Score=65.39 Aligned_cols=409 Identities=11% Similarity=0.089 Sum_probs=192.8 Q ss_pred CCC--cchhhhhh-hHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcC Q lcl|Aclame:pro 1 MPS--LEKYKKLN-EAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTD 77 (533) Q Consensus 1 ~~~--~~~w~k~d-e~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~ 77 (533) |-. -.+|---+ -.. +.+.+|. .+.....+ ++.+ ..... ..+.+.+|..-+ .+.+.+. T Consensus 1 ~~~~~~~~~~~~~~~~~----~~~~lf~--~~~~~~~~--~~~~-~~~~~---~~~~~~~~~~vs--------~~~al~~ 60 (424) T protein:vir:45 1 MLYCWWAHWLWPEGGRV----LLDALFR--SKSLENPS--TPIT-GDAVD---TDGLFRADVYVS--------PETAMKL 60 (424) T ss_pred CeeEeeeceecCcchhH----HHHhhcc--ccCCCCCc--cccc-hhhhh---hhccccCCceec--------hHHhhcc Confidence 211 12222211 111 1122221 11111111 1111 00000 001111122112 1234467 Q ss_pred hhHHHHHHHhhceeeecCCCCceeeeecccccccHHHH-HHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeec Q lcl|Aclame:pro 78 PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAIL-SYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEK 148 (533) Q Consensus 78 PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~-~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid 148 (533) |-|.+||+.|++.+=.. |+.|--++..-...++ ..+.++| .-....+..+..+++.|+.|..++.+ T Consensus 61 ~~v~~cv~~Ia~~iA~l-----p~~v~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~ 135 (424) T protein:vir:45 61 AAVYSCIYVLSSSLAQM-----PLHVMRRHKGKVEPARDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRN 135 (424) T ss_pred HHHHHHHHHHHHHHhhC-----ceEEEEecCCceeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEc Confidence 89999999999774322 2222111100011111 1233333 23446677888899999999987765 Q ss_pred CCCCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHH Q lcl|Aclame:pro 149 GSDGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWN 228 (533) Q Consensus 149 ~~k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~N 228 (533) . .+-+.+|.+|+|.++.+..+ +.+..|.+... +....+++++|+|+.+...+ +-+|+|.++.|.+.+. T Consensus 136 ~-~G~~~~L~~l~~~~v~i~~~--~~~~~y~~~~~-------~~~~~~~~~eVih~r~~~~d--~~~G~spi~~~~~~i~ 203 (424) T protein:vir:45 136 R-RGEVISLDCCMPWETTLMNT--GGRYTYGLYNE-------YGAFAISPDDMIHIRALGNN--QKMGLSPIMQHAETIG 203 (424) T ss_pred C-CCcEEEEEEecCceEEEEEc--CCeEEEEEEec-------CceEEECcccEEEecCcCCC--CcccccHHHHHHHHHH Confidence 4 45688999999999977543 34444544322 22345888999999764444 4589999999999999 Q ss_pred HHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccc Q lcl|Aclame:pro 229 QLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRR 308 (533) Q Consensus 229 qLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR 308 (533) ....+++...-+----|-..-++.++- .+.+.+++...+.+...|+- ..+ +.|.+. .+ T Consensus 204 ~~~~~~~~~~~~f~ng~~p~gil~~~~-~l~~e~~~~~~~~~~~~~~g--~~~-n~g~~~----------vl-------- 261 (424) T protein:vir:45 204 MGMSGQKYTESFFSGNARPAGIVSVKS-GLNKESWGWLKDQWQKASQA--LRR-QENKTM----------LL-------- 261 (424) T ss_pred HHHHHHHHHHHHHhccCCccEEEEeCC-CCCHHHHHHHHHHHHHHhcc--ccc-cCCcee----------Ec-------- Confidence 888888855433222232334444442 45444444333333333321 111 123221 11 Q ss_pred cCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhh Q lcl|Aclame:pro 309 GDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERM 385 (533) Q Consensus 309 ~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~q 385 (533) ..|.++..|.=. .+.-++-.++-.+.+.+++|||...|+..++. ..+.+....+.|.++ |.-+-..+++.|.+. T Consensus 262 --~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~-t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~k 338 (424) T protein:vir:45 262 --PADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLEKA-TFSNISAQAIQFVRYTMMPWVTNWEQELNRR 338 (424) T ss_pred --CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 124555555211 22234556788899999999999999864432 223344444556664 666777788888887 Q ss_pred hhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCc Q lcl|Aclame:pro 386 VRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTG 465 (533) Q Consensus 386 Lilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~ 465 (533) |+...... ..+.+.|..+.. ... -++.|.+.+..+- +..-||-.|.-. .++-.++ + T Consensus 339 Ll~~~e~~-~g~~i~fd~~~l----lr~-d~~~r~~~~~~~~----------~~g~~T~NE~R~-----~~gl~pi---~ 394 (424) T protein:vir:45 339 LFTRAELA-AGYYVRFNLTGL----LRG-TPQERAQFYHFAI----------TDGWMSRNEARA-----FEDMNPV---E 394 (424) T ss_pred cCChhhhc-CCcEEEeechhh----hcc-CHHHHHHHHHHHH----------hCCCcCHHHHHH-----HhCCCCC---C Confidence 76443221 123466654432 111 2344555555421 334566433211 1222222 2 Q ss_pred ccccccchhhhcCccCCcccccCCCcccccCCCCC Q lcl|Aclame:pro 466 GFGEETTPADFLGERGSPIESPRGRTEFDFGTEGG 500 (533) Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (533) +-|+-..|.- ...| .....+...+.|.+.+ T Consensus 395 ggD~~~~~~n----~~~~-~~~~~~~~~~~~~~~~ 424 (424) T protein:vir:45 395 GLDEMLVSVN----AANP-AGDFKPPKNDEGKTNE 424 (424) T ss_pred Ccceeeeccc----cccc-ccccCCCCCCCCCCCC Confidence 2121111110 0000 0000111111111111 No 109 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=98.92 E-value=1.5e-08 Score=63.54 Aligned_cols=459 Identities=11% Similarity=0.080 Sum_probs=193.6 Q ss_pred CCC-cchhhhhhhHHHHHHhhcccccccCccc---CCCCcccCCCCCcccc------------chhhcccccCccccchH Q lcl|Aclame:pro 1 MPS-LEKYKKLNEAVNFTNFLSPMYGMGAPHG---AGGSSMIPINMYHPFA------------TAGYASRFYGGIEFNRF 64 (533) Q Consensus 1 ~~~-~~~w~k~de~~~~~~~~~~~~s~~~p~~---~~gas~i~~~~~~~~~------------~~~~~~~~ygg~~~n~~ 64 (533) ||. +-.---.+-.. .--++-|.- -....+|..+...|.. +..-+..||.+.-.-- T Consensus 42 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~G- 112 (698) T protein:vir:10 42 VPADMGRRGALNALD--------AAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPG- 112 (698) T ss_pred cchhhcccccccccc--------cccccCCCccccccccceeccccCCccccchhhhhhcccccccccchhhhccCcch- Confidence 222 11100000000 000000110 0011222222222211 1111112222111111 Q ss_pred HHHHHHHHHhhcChhHHHHHHHhhceeeecC------CCCce----eeeecccccccH-HHHHH---HHHHhhhHHHHHH Q lcl|Aclame:pro 65 FLYDMYDRMDYTDPLISTVLDIIADECTIPN------ENGNI----VDVVTKDIELAK-AILSY---LDYVINIEKNAYP 130 (533) Q Consensus 65 ~li~~YR~m~~~~PEV~~AId~Ivneaiv~d------~~~~~----v~v~l~~~e~s~-si~~~---i~~ll~f~~~~~e 130 (533) +. |=..++|+||.+++++.|+.||+-.- ..+.+ +++.-...+.++ ..++. -++.|++..++.+ T Consensus 113 --y~-~la~laQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~e 189 (698) T protein:vir:10 113 --FP-TLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRT 189 (698) T ss_pred --HH-HHHHHhhccchhhHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHH Confidence 22 22244689999999999999996431 11110 122111111122 12222 3456788888888 Q ss_pred HHHHHhhcCceeEEEee---c----------C---CCCCeeeeEEcCcceeeEEeeccCc---EEEEEecccceecccCC Q lcl|Aclame:pro 131 IIRNMIKYGDMFLHILE---K----------G---SDGTIEKFQVVSPYIFSKRYNPETD---TWYYVITDVYRNVVSGY 191 (533) Q Consensus 131 ~~R~wyvDGr~~~~kii---d----------~---~k~gI~elr~ldP~~ik~v~d~~g~---~e~y~y~~~~~~~~~~~ 191 (533) .++.--++|.......+ | + .++.++.|+.|||..+.+-.-...+ -.||-... +..+++ T Consensus 190 ai~~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGL~ViDp~~vtP~~~n~~dP~spdfgkP~~-y~V~G~-- 266 (698) T protein:vir:10 190 TVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPST-WWMIGS-- 266 (698) T ss_pred HHHhcccccceEEEEEeecCccccccccccccccccCccceeeeeecccccccchhhhccchhhccCCCce-EEEecc-- Confidence 88888888886433322 1 1 1456777999999988663211001 12221111 111111 Q ss_pred cccccCcccEEEEecCcccCc-c----cccchhHHHHHHHHHH-HHHHHH-HHHHHHHhccccceeeecCCC-CCchhhH Q lcl|Aclame:pro 192 FNEDIPEEDVIHFSHKIDTNF-F----PYGRSYLESARAIWNQ-LRLMED-ALMLYRVVRSVDRRVFYVDVG-NVPPDKI 263 (533) Q Consensus 192 ~~~~~~~~dvi~~~~~~~~d~-~----~~g~s~L~~Aik~~Nq-Lrm~Ed-alVIyRi~RAPeRr~fyidvG-nlp~~kA 263 (533) ++-+..++.|...-+-+. . -.|+|.+..+..-+.. +++... +-++...... ++..|.. .|..... T Consensus 267 ---~IH~SRL~~~vg~pvpd~LKp~y~f~G~Sv~q~~~e~V~~~~rT~~~v~~Li~~~~~~----~l~~dla~aL~~g~~ 339 (698) T protein:vir:10 267 ---EVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS----GILMDLAQALTPGAN 339 (698) T ss_pred ---eecceeEEEecCCCchhhhcchhccCCccHHHHHHHHHHHHHHHhhhHHHHHHHhhHH----HHHHHHHHhcCChhh Confidence 233333333332222221 1 1478888877766444 565555 3333432211 1111211 0111111 Q ss_pred HHHH--HHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChHHH-HHHHHHHHHHh Q lcl|Aclame:pro 264 NEYL--TNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLAED-VEYMLNRLISA 340 (533) Q Consensus 264 eqy~--~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i~D-v~Yf~~kLy~a 340 (533) ++.. -.++++||. +-|-+..|+. .||| -+++| +|+-++| +.=|...+-.+ T Consensus 340 ~~l~~R~eli~~~Rs------n~G~~llDk~-------~Eef----------eq~st----~lSGLddVi~qf~q~VAga 392 (698) T protein:vir:10 340 VDLSMRAELINRYRD------NRNILFLDKA-------TEEF----------FQFNT----PLSGLDALQAQAQEQMSAV 392 (698) T ss_pred HHHHHHHHHHHHhcC------ccceEEEecC-------Ccce----------EEEec----CcCCHHHHHHHHHHHHHhh Confidence 1222 255566663 2222222211 1333 23443 5555555 77899999999 Q ss_pred cCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHH-HHHHHhhh-----hhhccCCCccceeEEecCCcHHHHHHHHH Q lcl|Aclame:pro 341 LKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGF-FVEELERM-----VRMNKEFADQDFRLVMNRSNSIVEGERFA 414 (533) Q Consensus 341 L~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~-F~~~l~~q-----Lilk~i~t~eew~~~f~~dn~f~E~ke~e 414 (533) .+||+.||=..+.-|-+++-.-|...|+..|..+|.. +...|++- +-.-|.+.+ +|.|.|++=..-+|..-+| T Consensus 393 a~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idp-~i~~~fnPL~qmtd~EkAe 471 (698) T protein:vir:10 393 SHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDP-SIKWQWNALRELDDLEVAE 471 (698) T ss_pred hcCchhhhhccCCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-cceEEeCCCCCcCHHHHHH Confidence 9999999987776565556666777799999999964 55555542 223466654 6999999766667888888 Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhc---------ccC-CCCCcccccccchhhhcCccCCcc Q lcl|Aclame:pro 415 VIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAG---------GGG-LFDTGGFGEETTPADFLGERGSPI 484 (533) Q Consensus 415 i~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 484 (533) |...+.+....+ +... -++.+++.++-..+.++ .++ .+++++.+++... .+..+ T Consensus 472 I~~k~A~~d~~~--------~~~g--vI~~~evr~rL~~d~~s~Y~~~~d~~d~p~~~~~~~~~~~~~~-----~~~~~- 535 (698) T protein:vir:10 472 ARYKQAQSDVLY--------VQEQ--VIRPDQVAARLNTEPDGPYAGKLDANDDPGAPADDDIDGVLTY-----VQRMA- 535 (698) T ss_pred HHhhhhHHHHHH--------HHhc--CCCHHHHHHHHhccCCCccccccCCcccCCCCCCCcchHHHhh-----hcCCc- Confidence 888887765442 1111 11222222111111111 111 1112222211110 01111 Q ss_pred cccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 485 ESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) +.+ +..-.+++.+.-.|.-.-.++++.+...++.- -.+..- T Consensus 536 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 576 (698) T protein:vir:10 536 EGG----DTGAPTAPGGARAGATAPPAAANVNANANPRE----AGAQDA 576 (698) T ss_pred CCC----CcccccccccccCCCCCCcccccccCCCCccc----cCcccc Confidence 000 00001111111111111111222111111100 000000 No 110 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=98.89 E-value=2e-08 Score=62.85 Aligned_cols=423 Identities=10% Similarity=-0.005 Sum_probs=198.4 Q ss_pred cccccCcccCC-CCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCcee Q lcl|Aclame:pro 23 MYGMGAPHGAG-GSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNIV 101 (533) Q Consensus 23 ~~s~~~p~~~~-gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v 101 (533) |...++|..+. -.-+|-.+--.+++..+. .+-.+...+ ..+.++-|++|...|++|.++++.+..-+...+-.-.| T Consensus 1 ~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~-~~e~~~~lr-~~~~~~ly~~m~e~D~~i~s~l~~rk~av~~~~w~v~p- 77 (469) T protein:vir:10 1 MTERVKTAAPVSEAGYVFGSGVVDGWTVWD-PFEQTPELQ-WPQSVAVYSRMDNEDSRVTSLLEAISLPIRSTPWRIRA- 77 (469) T ss_pred CCCcccCCCCccchhhhhhcccccchhhcc-ccccccccc-cccchHHHHHHHhhChHHHHHHHHHHHHHhcCCceEec- Confidence 55555555443 112221110011111000 000000111 12458899999878999999999998664433222111 Q ss_pred eeecccccccHHHHHHHHHHh----------------hhHHHHHHHHHHHhhcCceeEEEeecCCC---CC---eeeeEE Q lcl|Aclame:pro 102 DVVTKDIELAKAILSYLDYVI----------------NIEKNAYPIIRNMIKYGDMFLHILEKGSD---GT---IEKFQV 159 (533) Q Consensus 102 ~v~l~~~e~s~si~~~i~~ll----------------~f~~~~~e~~R~wyvDGr~~~~kiid~~k---~g---I~elr~ 159 (533) .-++.+..+.+-+.+...+ .+...+.+++-..+-+|-.++.++..... +| +.+|.. T Consensus 78 --~~~~~e~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~~~~~dG~~~~~~l~~ 155 (469) T protein:vir:10 78 --NGASDEVTEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPRNQSPDGRFWLRKLAP 155 (469) T ss_pred --CCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeecccccCCCceeeeeeee Confidence 1111122222222222211 24566777777788899999999876432 23 556666 Q ss_pred cCccee-eEEeeccCcEEEEEec-ccc----eecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 160 VSPYIF-SKRYNPETDTWYYVIT-DVY----RNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLM 233 (533) Q Consensus 160 ldP~~i-k~v~d~~g~~e~y~y~-~~~----~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~ 233 (533) .||+++ +..++..++...+.-. +.. .....+.....+++...++++|+--.++ ++|.|.|.+|..+|-..+.. T Consensus 156 rp~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~k~i~~~~~~~~g~-p~g~gLlr~~~~~~~fK~~~ 234 (469) T protein:vir:10 156 RPQWTISKFNVAPDGGLESIEQIAPPARTRGSLYVANIAPPEIPVNRLVVYTRNKRPGQ-WQGKSILRSAYKHWLLKDKL 234 (469) T ss_pred cCcccceeeeeccCCceeeeeecCcccccccccccCCCCccccccCcEEEEEecCCCCC-cccchhHHHHHHHHHHHHHH Confidence 677777 4456666554433221 110 0011223456788999999999876665 79999999999999999888 Q ss_pred HHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCc Q lcl|Aclame:pro 234 EDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRA 313 (533) Q Consensus 234 EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~g 313 (533) ....+.+=-.-.-.=|+..++.|.-...| +-+.+.+..+++ +...|-| + ..| T Consensus 235 ~~~w~~f~EryG~P~~vgky~~~a~~~ek--~~l~~a~~~~~~----g~~a~~i-----------------i-----p~~ 286 (469) T protein:vir:10 235 LRIEAATAERNGMGIPVGTASSATDEDEV--RKMAALARSVRG----GINAGVG-----------------L-----AQG 286 (469) T ss_pred HHHHHHHHHHcCCcceEEecCCCCCHHHH--HHHHHHHHHHhc----CCceEEE-----------------c-----cCC Confidence 88777665433433456666666422222 222223222221 1111211 1 146 Q ss_pred ceeeecCC-CCCC-hHHHHHHHHHHHHHhcCCCeeeccCCC-CccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh--- Q lcl|Aclame:pro 314 VEIDILQG-SKVD-LAEDVEYMLNRLISALKVPKAFIGYEG-DVNAKNTLATQDIKFNNTIKRIQGFFVEELERMVR--- 387 (533) Q Consensus 314 tEi~TLpG-~nlg-~i~Dv~Yf~~kLy~aL~VP~srl~~~~-~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qLi--- 387 (533) ++|+.+.. |+.. -..=++|..+++-+++--.. |..++ +.+++..-+-.+ -|...++...+.+.+.|..||| T Consensus 287 ~~ie~~ea~g~~~~~~~li~~~d~~Isk~iLG~t--lTs~~~gGS~a~~~vh~e-v~~d~~~sDa~~i~~tln~~li~~l 363 (469) T protein:vir:10 287 QILELLGVSGNLPDIRRAIEGHDRSIALSGLAHF--LNLDGKGGSYALASVLED-PFTQAVHAYATSICRIANQHIIEDL 363 (469) T ss_pred ceEEEeecCCCchHHHHHHHHHHHHHHHHHhccc--ccccCccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH Confidence 78888864 3321 12239999999888765433 33332 233432222222 2455556555566666666554 Q ss_pred --hccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHhcCChhhhHHHHHHhhhcccCC Q lcl|Aclame:pro 388 --MNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKG----WVREDWIYSNILQIPYDLKPQEEVAEAAGGGGL 461 (533) Q Consensus 388 --lk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~p----yvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~ 461 (533) ++--....-.+|.|..-. .+.+...++++.|..+-- -+.+.|+++.+.- .. T Consensus 364 ~~lN~g~~~~~P~~~~~~~e-----~~~~~~a~~i~~l~~~G~~~~~~~~~~~~~e~~gi-p~----------------- 420 (469) T protein:vir:10 364 VDINFGVDTPAPVLTFDPIG-----SRQDLTAAAVKLLYDAGVFDDDPAVKRAIRQRFNL-PS----------------- 420 (469) T ss_pred HHhcCCCCCCccEEEecCCC-----CcHHHHHHHHHHHHhcCCccCccccHHHHHHHhCC-CC----------------- Confidence 342222222456663321 122344555555554311 2556677655432 21 Q ss_pred CCCcccccccchhhhcCccCCcccc--cCCCcccccCCCCCccC---CCccCcCcc Q lcl|Aclame:pro 462 FDTGGFGEETTPADFLGERGSPIES--PRGRTEFDFGTEGGEEL---GGELNLGGA 512 (533) Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~ 512 (533) +..++.+... ..+. ..|.++ |.+...++.++.....+ -++ |.+| T Consensus 421 ---~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~da 469 (469) T protein:vir:10 421 ---ELNDTPSAEP-EEPA-AVPNQSAAPARTRSSGNADARARAPKADQGV--LFDA 469 (469) T ss_pred ---CCCCcccccc-hhcc-cCCCCCccccccCCCCCcccccccCCChHHh--hccC Confidence 1111000000 0000 000001 11110011111000000 000 1122 No 111 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=98.78 E-value=5.2e-08 Score=60.52 Aligned_cols=442 Identities=14% Similarity=0.022 Sum_probs=187.6 Q ss_pred ccCcccCCCCcccCCC----------CCccccchhhcccccC-ccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeec Q lcl|Aclame:pro 26 MGAPHGAGGSSMIPIN----------MYHPFATAGYASRFYG-GIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIP 94 (533) Q Consensus 26 ~~~p~~~~gas~i~~~----------~~~~~~~~~~~~~~yg-g~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~ 94 (533) |+-.+..-.++.|-.. +.+..+-... ..++. |...- +-....-+.++...|-+..||+.+++..... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p-~~~~~~L~~~~e~~~~~~~~i~~~~~~iag~ 78 (651) T protein:vir:99 1 MTDTTGETQETKVHVEGLGGEADLAKSPNSTQIPDH-RIQSHNVGVNP-PYNPDRLAAFLELNETLATGIRKKSRYEVGF 78 (651) T ss_pred CCCccceeeeeEEEeecccccccccccccccccchh-hhcccCCCCCC-CCCHHHHHHHHhcChHHHHHHHHHhhhhhcc Confidence 2222211111111110 0011111111 11122 22321 1124455667766899999999999887766 Q ss_pred CCCCcee-eeecccccccHHHHHHHHHH--------------hhhHHHHHHHH----HHHhhcCceeEEEeecCCCCCee Q lcl|Aclame:pro 95 NENGNIV-DVVTKDIELAKAILSYLDYV--------------INIEKNAYPII----RNMIKYGDMFLHILEKGSDGTIE 155 (533) Q Consensus 95 d~~~~~v-~v~l~~~e~s~si~~~i~~l--------------l~f~~~~~e~~----R~wyvDGr~~~~kiid~~k~gI~ 155 (533) +.+-.|. .++.+ .-+.+.++..... ++++....+++ ..+.+-|+.|+..+.+.. +-+. T Consensus 79 g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~tGna~ieiIrn~~-g~pv 155 (651) T protein:vir:99 79 GFDLVPAQGVDGD--DASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHGVGWLALEMLTDIE-GRPV 155 (651) T ss_pred CceeeecccCCCC--ccchHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHHHhhHhhhhhhcCc-cchh Confidence 6554332 22222 2233333332211 12222233333 345566888877765532 2256 Q ss_pred eeEEcCcceeeEEeeccC--------------------------------cEEEEEecccce------------------ Q lcl|Aclame:pro 156 KFQVVSPYIFSKRYNPET--------------------------------DTWYYVITDVYR------------------ 185 (533) Q Consensus 156 elr~ldP~~ik~v~d~~g--------------------------------~~e~y~y~~~~~------------------ 185 (533) .+.++||..++...+... ..++++|-..+. T Consensus 156 ~L~~lp~~~~Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~ 235 (651) T protein:vir:99 156 GLAYVPARTVRVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDRYRGQEVVIDESGDEPTIRYR 235 (651) T ss_pred hhhhcChhheeeecccccccchhhhhhhcccccccchhHHHHHHHHHhcCcceEEEeeccccceeeeeccCCcceeEEec Confidence 677788877654432111 012222211100 Q ss_pred ------------------e-cccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 186 ------------------N-VVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSV 246 (533) Q Consensus 186 ------------------~-~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAP 246 (533) + .........+++.+|||+......+ +.+|+|-|..|+..+.....+++...-|=---+- T Consensus 236 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~eViHir~~~~~~-g~~G~spl~~a~~~i~~a~~a~~~~~~~f~NG~~ 314 (651) T protein:vir:99 236 EDEESEREPIFVDRETGDVTTGDANGLENRPANELIFIPNPSILE-DDYGVPDWVSAIRTISADEAAKDYNRDFFDNDTI 314 (651) T ss_pred cCcceeeeeecccceeeeEEEcCCCceeEecccceEEecCCCCCC-CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCC Confidence 0 0011122345678999996433222 3599999999999999988888855433222233 Q ss_pred cceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCC- Q lcl|Aclame:pro 247 DRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVD- 325 (533) Q Consensus 247 eRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg- 325 (533) .+-++.+.-+.+-+ ++.+-+++.+++. +. +.|++....... ... +++ -..|.++..|.=.... T Consensus 315 p~gil~~~~~~ls~-e~~~~lr~~~~~~-----~~-nagk~~vL~~~~-~~~-----~~~---~~~g~~~~pls~~~~~D 378 (651) T protein:vir:99 315 PRMVIKVTGGELSE-ESKRDLRQMLNGL-----RE-ESHRAVVLEVEK-FQS-----QLD---EDVEIELEPMGQGISEE 378 (651) T ss_pred CceEEEecCCCCCH-HHHHHHHHHHHHH-----hc-cCCceEEeeccc-ccc-----ccc---ccCCceEEEcCcCchhh Confidence 44555554344443 3333344444432 11 123221100000 000 000 0124445444211111 Q ss_pred -h-HHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCcccee--EE Q lcl|Aclame:pro 326 -L-AEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFR--LV 400 (533) Q Consensus 326 -~-i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~--~~ 400 (533) + ++=-+|....+.++.+||...|+..++.+. +.+.-..+.|.+ -|.-+.+++.+.|.+.|+...... ..|+ |. T Consensus 379 ~qfle~r~~~~~eIa~afgVPp~~lG~~~~~~~-sn~E~~~~~f~~~tL~P~~~~ie~eln~kLl~~~e~~-~~~~i~~e 456 (651) T protein:vir:99 379 MDFRQFREKNEHEIAKVLEVPPVKIGVTDSANR-SNSDQQDKDFALEVIQPEQHTFAEWLYQIIHQQALGV-TDWTIEYE 456 (651) T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccc-cCceEEEE Confidence 1 122356677899999999999986554433 233334445544 677788889998888887654222 2444 44 Q ss_pred ecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCcc Q lcl|Aclame:pro 401 MNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGER 480 (533) Q Consensus 401 f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~ 480 (533) |..+... ..+. ..|.+.+..+ -+..-||..+.=. .++-.++. ++..+ .. T Consensus 457 f~~~~ll--r~D~---~~~~e~~~~~----------i~~G~~T~NE~R~-----~lglppi~-~~~gd----------~~ 505 (651) T protein:vir:99 457 LRGADQP--KQEA---QLAEQRVRAM----------RLAGVGLVDEARE-----ELGLDPLG-EPYGE----------MT 505 (651) T ss_pred eccchhh--hccH---HHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCCC-Ccccc----------cc Confidence 4433321 1111 2233333321 1233455433211 11111111 01111 00 Q ss_pred CCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccC------CCCCCCC Q lcl|Aclame:pro 481 GSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEE------LPFPEEE 533 (533) Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~ 533 (533) ..+++... .+....||+ -.+...+.++...+..++ +..|+-. T Consensus 506 l~~~~~~~---------~g~~~~gge--~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~~ 553 (651) T protein:vir:99 506 LSEFEAEV---------AGDVAGGGE--TEAVHEPPEENKIGEREWDTVKSELTTKDPI 553 (651) T ss_pred cccccccc---------ccccccCCC--CcccccCccccccccchhhhhhhhhcccchh Confidence 11111111 011122222 111112222211222211 1222211 No 112 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=98.75 E-value=6.4e-08 Score=60.03 Aligned_cols=433 Identities=10% Similarity=0.050 Sum_probs=186.0 Q ss_pred CCC-cchhhhhhhHHHHHHhhcccccccCcc------cCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHH Q lcl|Aclame:pro 1 MPS-LEKYKKLNEAVNFTNFLSPMYGMGAPH------GAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRM 73 (533) Q Consensus 1 ~~~-~~~w~k~de~~~~~~~~~~~~s~~~p~------~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m 73 (533) |-+ |..+.-.|+....+.|...+..-. |+ -..|.+.|.. .....-+++|.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~rl~~l~~Yy~G~~~i~~---------------------~~~~~~~~~~~~ 58 (484) T protein:vir:77 1 MTSPLQKQENVDPEKAREEMLNLFTERT-QDLGDNTAYYESERRPDA---------------------VGVTVPQQMQKL 58 (484) T ss_pred CCCcccccCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchh---------------------cccccchhHHhh Confidence 333 333333443333333333332221 11 1222222110 000011222222 Q ss_pred hhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCC--- Q lcl|Aclame:pro 74 DYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGS--- 150 (533) Q Consensus 74 ~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~--- 150 (533) .....-+.-+|+..+.-..+-++ ...+.+-.++.+..|.+.-+|+....+.++..+++|+.|++...+.. T Consensus 59 ~~~~n~~~~ivd~~~~~l~~~g~-------~~~~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~ 131 (484) T protein:vir:77 59 LAHVGYPRLYIDAIAARQELEGF-------RLGGADKADEQLWDWWQANDLDIESTLGHTDSLVHGRSYITISKPDPNID 131 (484) T ss_pred hhhcCcHHHHHHHHHhhhccCce-------ecCCcchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEecCCCCcc Confidence 22345667778877765442221 11221222333445556668999999999999999999998766531 Q ss_pred ---CCCeeeeEEcCcceeeEEeeccCcE-----------------EEEEeccccee-----cccC----CcccccCcccE Q lcl|Aclame:pro 151 ---DGTIEKFQVVSPYIFSKRYNPETDT-----------------WYYVITDVYRN-----VVSG----YFNEDIPEEDV 201 (533) Q Consensus 151 ---k~gI~elr~ldP~~ik~v~d~~g~~-----------------e~y~y~~~~~~-----~~~~----~~~~~~~~~dv 201 (533) ..++..++.++|+.+-.++|...+. ..-+|++...+ .+.. ...+.+..=-+ T Consensus 132 ~~~~~~~~~i~~~~p~~~~~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 211 (484) T protein:vir:77 132 PGVDPEVPIIRVEPPTNLYAQIDPRTRQVMRAIRAIEDEEGNEVIGATLYLPNNTVIWNREDGQWVQVANVAHNLEMVPV 211 (484) T ss_pred cccccccceEEEeccceeEEEecCCCCceEEEEEEEEeecCCcEEEEEEEecCeEEEEEecCCceEeeccccCCCCCcce Confidence 1223457889999998888865432 11122221111 1100 11122222246 Q ss_pred EEEecCcccCcccccchhHHHHHHHH-HHH-HHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhcee Q lcl|Aclame:pro 202 IHFSHKIDTNFFPYGRSYLESARAIW-NQL-RLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYW 279 (533) Q Consensus 202 i~~~~~~~~d~~~~g~s~L~~Aik~~-NqL-rm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~v 279 (533) ++|.++. ...+++|.|-|.+.++.+ ..+ +.+-+.+++-+..-.|.|-+.-.+....+. T Consensus 212 v~f~N~~-~~~~~~G~s~i~~~v~~L~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~------------------- 271 (484) T protein:vir:77 212 IPIPNRT-RLSDLYGTTEITPELRSVTDAAARTLMLMQATAELMGVPQRLLFGVKGEELGV------------------- 271 (484) T ss_pred EEecccc-ccCccCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhCCCcchhcc------------------- Confidence 7776543 222357777666544332 222 223333333343333333222111111111 Q ss_pred eccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCCh-HHHHHHHHHHHHHhcCCCeeeccCCCCc-cch Q lcl|Aclame:pro 280 VRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDL-AEDVEYMLNRLISALKVPKAFIGYEGDV-NAK 357 (533) Q Consensus 280 yd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~-i~Dv~Yf~~kLy~aL~VP~srl~~~~~~-gr~ 357 (533) +..+|... +-...-.+|..- +-++.+.++++++++- ++-++-.-.++...-++|..-|+....- .-+ T Consensus 272 -~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg 340 (484) T protein:vir:77 272 -DPETGQTL-------FDAYLARILAFE---DHESKAQQFSAAELRNFVDALDALDRKAAAYTGLPPYYLSFSSENPASA 340 (484) T ss_pred -cccccchh-------hhhhhhhhcccC---CCCceeEeecCCChHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHH Confidence 11122110 000111244432 2235566777665542 3345666667777788998888743321 122 Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhh-----hccCCCccce---eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 358 NTLATQDIKFNNTIKRIQGFFVEELERMVR-----MNKEFADQDF---RLVMNRSNSIVEGERFAVIEQRIGIAERLKGW 429 (533) Q Consensus 358 ~eI~rde~kF~kfI~rLr~~F~~~l~~qLi-----lk~i~t~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~py 429 (533) ..|.--+..+..-+.+.|+.|..-|++-+. .++.-...+| .+.|.....-+....++.+ ..+.+.-.+. T Consensus 341 ~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ad~~---~kl~~~g~gi 417 (484) T protein:vir:77 341 EAIRSSESRLVKTVERKNKIFGGAWEQAMRVAYKVMNGGDIPPEYYRMESIWRDPSTPTYAAKADAA---TKLYNNGQGV 417 (484) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccceEEecCCCCCCHHHHHHHH---HHHHhccCCC Confidence 334444555666777778888766554322 2332222233 4667543332221112111 1223333568 Q ss_pred hhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCc Q lcl|Aclame:pro 430 VREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNL 509 (533) Q Consensus 430 vgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (533) +++.++.+. |.++++.+++-+.+++|.... +....++..+ +..+.++... ..++.+ T Consensus 418 ~s~et~~~~-l~~~~~~~~e~~~~~~ee~~~-----------~~~~~~~~~~--~~~~~~~~~~-----~~~~~~----- 473 (484) T protein:vir:77 418 IPKERARID-MGYSITEREEMRKWDEEEQAQ-----------GLGLMGTMFG--TDPSGGGNPD-----NPETPE----- 473 (484) T ss_pred CCHHHHHhc-CCCChhHHHHHHHHHHHHHHH-----------HHHHHhhhcc--ccccCCCCCC-----CCCccc----- Confidence 888876655 688876665434443332100 0000011100 0111100000 000000 Q ss_pred CcccCCchhhcC Q lcl|Aclame:pro 510 GGAFEEFEEETG 521 (533) Q Consensus 510 ~~~~~~~~~~~g 521 (533) +++.+...++| T Consensus 474 -~~~~~~~~~~~ 484 (484) T protein:vir:77 474 -PQPNPAEEAAA 484 (484) T ss_pred -ccCCCccccCC Confidence 11222222222 No 113 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=98.74 E-value=2.3e-08 Score=62.49 Aligned_cols=241 Identities=11% Similarity=0.030 Sum_probs=126.0 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) |.- |.+ +.. ....+.+......... ..++.|..... +. .. .+.+.|-| T Consensus 1 Mgl---F~~-------------------~~~-r~~~~~~~~~~~~~~~---~~~~~~~~~~~----v~-~~-~al~~~~v 48 (251) T protein:vir:46 1 MGI---FYK-------------------NEK-RDLQYNEDDLQMMVQT---LPSFQGTKLRQ----YK-DI-EAIRHSDI 48 (251) T ss_pred CCc---ccc-------------------ccc-cccCCCccchhhhhhh---hccccCcCcce----ec-hh-hhhccHHH Confidence 221 111 100 0000001000001110 11111111111 10 11 23457899 Q ss_pred HHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCC Q lcl|Aclame:pro 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDG 152 (533) Q Consensus 81 ~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~ 152 (533) .+||+.|++.+-.. |+.+.-++-+. ....+.++| .-....+.++..+++.|+.|..++.|. .+ T Consensus 49 ~~~i~~ia~~iA~l-----p~~~~~~~~~~---~~~~~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~-~G 119 (251) T protein:vir:46 49 FTAVMMIASDLARM-----PIRVTVNGQIN---YSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK-TG 119 (251) T ss_pred HHHHHHHHHhHhhC-----ceEEeeCcccc---ccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECC-CC Confidence 99999999763211 22221111011 112233433 234567778889999999999988764 35 Q ss_pred CeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 153 TIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRL 232 (533) Q Consensus 153 gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm 232 (533) -+.+|.+|+|.+|+++.+..+..+|+.+.... ...+....+++++++|+..-.+++ -+|+|-|+.|...+..... T Consensus 120 ~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~---~~~g~~~~~~~~diiH~r~~~~dg--~~G~spi~~~~~~i~~~~~ 194 (251) T protein:vir:46 120 EPMNLTFRKTSEIELKSDARGRLYYFHQRIDS---NGNNIERNVKFEDMLDIKFYSLDG--INGLSLLDTLSRTIESDNN 194 (251) T ss_pred cEEEEEEECCceEEEEECCCCcEEEEEEEecc---CCcceeEEECCccEEEecCcCCCC--eeecCHHHHHHHHHHHHHH Confidence 58999999999999999988877665443221 122345678899999998644443 4999999999999998888 Q ss_pred HHHHHH-HHHHhccccceeeecCCCCCchhhH-HHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHh Q lcl|Aclame:pro 233 MEDALM-LYRVVRSVDRRVFYVDVGNVPPDKI-NEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILK 301 (533) Q Consensus 233 ~EdalV-IyRi~RAPeRr~fyidvGnlp~~kA-eqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smle 301 (533) .++... .++- -+-.+-++.++ |.+...++ ++..+.+...|. -..+.|.+.+ .|=| T Consensus 195 ~~~~~~~~f~n-g~~p~gil~~~-~~l~~~e~~~~~~~~~~~~~~----g~~n~g~~~~--------gm~~ 251 (251) T protein:vir:46 195 GKDFLNNFLRN-GTHAGGILKMK-GVLDNKKARDRAREEFPKVLV----ELNKLGKLSY--------SMNQ 251 (251) T ss_pred HHHHHHHHHHc-cCCCcEEEEeC-CCCCCHHHHHHHHHHHHHHhc----Cccccccccc--------ccCC Confidence 887433 3332 22224444444 55543443 444444444432 1123344321 1211 No 114 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=98.60 E-value=2.1e-07 Score=57.19 Aligned_cols=461 Identities=12% Similarity=0.101 Sum_probs=190.8 Q ss_pred CCC-cchhhhhhhHHHHHHhhcccccccCccc---CCCCcccCCCCCcccc------------chhhcccccCccccchH Q lcl|Aclame:pro 1 MPS-LEKYKKLNEAVNFTNFLSPMYGMGAPHG---AGGSSMIPINMYHPFA------------TAGYASRFYGGIEFNRF 64 (533) Q Consensus 1 ~~~-~~~w~k~de~~~~~~~~~~~~s~~~p~~---~~gas~i~~~~~~~~~------------~~~~~~~~ygg~~~n~~ 64 (533) ||. +-.---.+-.. .--++-|.- -....+|..+...|.. +..-+..||.+.-.-- T Consensus 42 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~G- 112 (695) T protein:vir:78 42 VPADMGRRGALNALD--------AAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPG- 112 (695) T ss_pred cchhhcccccccccc--------cccccCCCcccccceeceeccccCCccccchhhhhhcccccccccchhhhccCcch- Confidence 332 11100000000 000000110 0011223222222211 1111112222111111 Q ss_pred HHHHHHHHHhhcChhHHHHHHHhhceeeecC------CCCce----eeeecccccccH-HHHHH---HHHHhhhHHHHHH Q lcl|Aclame:pro 65 FLYDMYDRMDYTDPLISTVLDIIADECTIPN------ENGNI----VDVVTKDIELAK-AILSY---LDYVINIEKNAYP 130 (533) Q Consensus 65 ~li~~YR~m~~~~PEV~~AId~Ivneaiv~d------~~~~~----v~v~l~~~e~s~-si~~~---i~~ll~f~~~~~e 130 (533) +. |=..++|+||.+++++.|+.||+-.- ....+ +++.-...+.++ ..++. -++.|++..++.+ T Consensus 113 --y~-~la~laQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erL~V~~~l~e 189 (695) T protein:vir:78 113 --FP-TLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRT 189 (695) T ss_pred --HH-HHHHHhhccchhhHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHH Confidence 22 22244689999999999999996431 11110 122111111122 12222 3456788888888 Q ss_pred HHHHHhhcCceeEEEeec--C--------------CCCCeeeeEEcCcceeeEEeeccCc---EEEEEecccceecccCC Q lcl|Aclame:pro 131 IIRNMIKYGDMFLHILEK--G--------------SDGTIEKFQVVSPYIFSKRYNPETD---TWYYVITDVYRNVVSGY 191 (533) Q Consensus 131 ~~R~wyvDGr~~~~kiid--~--------------~k~gI~elr~ldP~~ik~v~d~~g~---~e~y~y~~~~~~~~~~~ 191 (533) .++.--++|.......++ + .++.++.|+.|||..+.+-.-...+ -.||-..... ..+ T Consensus 190 aik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~-V~G--- 265 (695) T protein:vir:78 190 TVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW-MIG--- 265 (695) T ss_pred HHHhhccccceEEEEEeccCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEE-Eec--- Confidence 888888888864333221 1 2456777999999988763211001 1222111111 111 Q ss_pred cccccCcccEEEEecCcccCc-----ccccchhHHHHHHHHH-HHHHHHH-HHHHHHHhccccceeeecCCC-CCchhhH Q lcl|Aclame:pro 192 FNEDIPEEDVIHFSHKIDTNF-----FPYGRSYLESARAIWN-QLRLMED-ALMLYRVVRSVDRRVFYVDVG-NVPPDKI 263 (533) Q Consensus 192 ~~~~~~~~dvi~~~~~~~~d~-----~~~g~s~L~~Aik~~N-qLrm~Ed-alVIyRi~RAPeRr~fyidvG-nlp~~kA 263 (533) .++-+..++.|...-+-+. .-.|+|.+..+..-+. -+++... +-++.... -+++..|.. -|..... T Consensus 266 --~kIH~SRL~~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~----v~~lk~dla~~L~~g~~ 339 (695) T protein:vir:78 266 --TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFS----VSGILMDLAQALMPGAN 339 (695) T ss_pred --eEEeeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhh----hHHHHHHHHHhhcChhH Confidence 1222233333322211111 1157787777775543 3666665 33333211 111112211 1111112 Q ss_pred HHH--HHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChHHH-HHHHHHHHHHh Q lcl|Aclame:pro 264 NEY--LTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLAED-VEYMLNRLISA 340 (533) Q Consensus 264 eqy--~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i~D-v~Yf~~kLy~a 340 (533) ++. --.++++||.+ -|-+..|+. .||| -+++| +|+-++| +.=|...+-.+ T Consensus 340 ~~l~~R~eli~~~Rsn------~G~~llDk~-------~Eef----------eq~st----slSGLddVi~qf~q~VAga 392 (695) T protein:vir:78 340 VDLSMRAELINRYRDN------RNILFLDKA-------TEEF----------FQFNT----PLSGLDALQAQAQEQMSAV 392 (695) T ss_pred HHHHHHHHHHHHhcCc------cceEEEecC-------Ccce----------EEEec----ccCCHHHHHHHHHHHHHhh Confidence 222 23566777632 222222211 1333 13333 5665655 67799999999 Q ss_pred cCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHH-HHHHHhhh-----hhhccCCCccceeEEecCCcHHHHHHHHH Q lcl|Aclame:pro 341 LKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGF-FVEELERM-----VRMNKEFADQDFRLVMNRSNSIVEGERFA 414 (533) Q Consensus 341 L~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~-F~~~l~~q-----Lilk~i~t~eew~~~f~~dn~f~E~ke~e 414 (533) .+||+.||=..+.-|-+++---|...|...|..+|.. +...|++- +-..|.+.+ +|.|.|++=..-+|..-+| T Consensus 393 a~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idp-di~~~fnPL~qmtd~EkAe 471 (695) T protein:vir:78 393 SHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDP-SIKWQWNALRELDDLEVAE 471 (695) T ss_pred hcCchhhhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-cceEEeCCCCCcCHHHHHH Confidence 9999999987766555556666777799999999964 55555542 223466654 6999999766666777888 Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcC--ccCCcccccCCCcc Q lcl|Aclame:pro 415 VIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLG--ERGSPIESPRGRTE 492 (533) Q Consensus 415 i~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 492 (533) |...+.+....+ + . ..-++.+++.++-..+. ++-|-. ..|....|+.-.- ..+...-..+.++. T Consensus 472 I~~k~A~~d~~~---~-----~--~gvI~~~evr~rL~~d~---~s~Y~~-~~D~~d~p~~~~~~~~~~~~~~~~~~~~~ 537 (695) T protein:vir:78 472 SRYKQAQSDVLY---V-----Q--EQVIRPDQVAARLNTEP---DGPYAG-KLDANDDPGVPADDDIDGVLTYVQRLAEG 537 (695) T ss_pred HHhhhhHHHHHH---H-----H--hcCCCHHHHHHHHhcCC---Cccccc-ccccccCCCcCccchhhhhHhhhcCcccc Confidence 887777765442 1 1 11112222221111111 111110 0000000000000 00000001111111 Q ss_pred cccCCCCCccCCCcc------CcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 493 FDFGTEGGEELGGEL------NLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 493 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) .+.|..++ ...|.- |+.....+ .. .|+ +.|.-. T Consensus 538 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~--~~-ag~----~~~~~~ 576 (695) T protein:vir:78 538 GDTGAPGG-ARAGATAPPTVANVNANVKP--RE-AGA----QDAAMR 576 (695) T ss_pred cccCCCCC-CCCCCCCCCceeeeeccccc--cc-cCC----CCcccc Confidence 12222111 000100 01000000 00 111 011111 No 115 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=98.55 E-value=3.1e-07 Score=56.30 Aligned_cols=435 Identities=11% Similarity=0.047 Sum_probs=181.0 Q ss_pred CCCcchhhhhhhHHHHHHhhccccccc-----CcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMG-----APHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDY 75 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~-----~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~ 75 (533) ||-- ...|+...-+.|..++.... ..+-.+|.+.|+- .+ ... . +-.+.+| + T Consensus 1 ~~~~---~~~d~~~~i~~L~~~~~~~~~r~~~~~~Yy~g~~~i~~---~~------------~~~--~-~~~~~~~-~-- 56 (488) T protein:vir:23 1 MAET---ESIDPEKLRDQLLDAFENKQNELKSSKAYYDAERRPDA---IG------------LAV--P-LDMRKYL-A-- 56 (488) T ss_pred CCcc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh---cC------------ccc--c-hhhhhhh-h-- Confidence 2221 11111111112222211110 0011233222210 00 000 0 1112222 2 Q ss_pred cChhHHHHHHHhhceeeecCCC-Cceeeeecccc--cccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecC--- Q lcl|Aclame:pro 76 TDPLISTVLDIIADECTIPNEN-GNIVDVVTKDI--ELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKG--- 149 (533) Q Consensus 76 ~~PEV~~AId~Ivneaiv~d~~-~~~v~v~l~~~--e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~--- 149 (533) .++-+.-+|+.+++-.++-++- +.++....... +-..+....|...-+|+.+..+.++.++++|+.|+..-.+. T Consensus 57 ~~n~~~~ivd~~a~~l~~~Gf~~~~~~~~~~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~ 136 (488) T protein:vir:23 57 HVGYPRTYVDAIAERQELEGFRIPSANGEEPESGGENDPASELWDWWQANNLDIEATLGHTDALIYGTAYITISMPDPEV 136 (488) T ss_pred hcchHHHHHHHHHHhhhccceeccCCcccccccccchhHHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCccc Confidence 2456777888877654433332 22222222211 11122233444455789999999999999999988764431 Q ss_pred ---CCCCeeeeEEcCcceeeEEeeccCcE-E----------------EEEecccceec---ccC------CcccccCccc Q lcl|Aclame:pro 150 ---SDGTIEKFQVVSPYIFSKRYNPETDT-W----------------YYVITDVYRNV---VSG------YFNEDIPEED 200 (533) Q Consensus 150 ---~k~gI~elr~ldP~~ik~v~d~~g~~-e----------------~y~y~~~~~~~---~~~------~~~~~~~~~d 200 (533) ...|..-++.++|+.+-.++|..++. . .-+|++...+. ..+ ...+.+..=- T Consensus 137 ~~~~~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vP 216 (488) T protein:vir:23 137 DFDVDPEVPLIRVEPPTALYAEVDPRTRKVLYAIRAIYGADGNEIVSATLYLPDTTMTWLRAEGEWEAPTSTPHGLEMVP 216 (488) T ss_pred ccCCCCCcceEEEeccceeEEEEecCCCceEEEEEEEEecCCCcEEEEEEEecCcEEEEEecCCceEeccccccCCCCcc Confidence 23455568889999998888865442 1 11122211110 000 1112232234 Q ss_pred EEEEecCcccCcccccchhHHHHHHHH-HH-HHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhce Q lcl|Aclame:pro 201 VIHFSHKIDTNFFPYGRSYLESARAIW-NQ-LRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDY 278 (533) Q Consensus 201 vi~~~~~~~~d~~~~g~s~L~~Aik~~-Nq-Lrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~ 278 (533) +++|.++.-.. +.+|.|-|.+.++++ .. =+.+-+.++.-....-|.|-+. ...++....+. + +.+. T Consensus 217 vv~f~n~~~~~-~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~---G~~~~~~~~~~-----~---~~~~ 284 (488) T protein:vir:23 217 VIPISNRTRLS-DLYGTSEISPELRSVTDAAAQILMNMQGTANLMAIPQRLIF---GAKPEELGINA-----E---TGQR 284 (488) T ss_pred eEEeccccccC-CcCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh---CCCcccccccc-----c---ccch Confidence 67776543322 357888776544332 11 1222233333333323333221 11111000000 0 0000 Q ss_pred eeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChH-HHHHHHHHHHHHhcCCCeeeccCCCCccc- Q lcl|Aclame:pro 279 WVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLA-EDVEYMLNRLISALKVPKAFIGYEGDVNA- 356 (533) Q Consensus 279 vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr- 356 (533) +.....| ..|.- ++|...++-++++.+++.. +-++=+-.+++..-++|..-|+.... +. T Consensus 285 ~~~~~~~----------------~v~~~--~~g~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~-n~~ 345 (488) T protein:vir:23 285 MFDAYMA----------------RILAF--EGGEGAHAEQFSAAELRNFVDALDALDRKAASYSGLPPQYLSSSSD-NPA 345 (488) T ss_pred hhhhhhh----------------hhccC--CCCCCceeEecCCCChHHHHHHHHHHHHHHhcccCCCHHHhccccC-cch Confidence 1111111 12221 2344456777887666533 33555566677778888888864322 22 Q ss_pred -hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh-----hccCCCccce---eEEecCCcHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 357 -KNTLATQDIKFNNTIKRIQGFFVEELERMVR-----MNKEFADQDF---RLVMNRSNSIVEGERFAVIEQRIGIAERLK 427 (533) Q Consensus 357 -~~eI~rde~kF~kfI~rLr~~F~~~l~~qLi-----lk~i~t~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~ 427 (533) +..|..-+..+..-+.+.++.|...|++-+. +.+.-.+.+| ++.|.....-+....++.+ ..+.+... T Consensus 346 Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~f~~~~~~s~~~~ada~---~kl~~~g~ 422 (488) T protein:vir:23 346 SAEAIKAAESRLVKKVERKNKIFGGAWEQAMRLAYKMVKGGDIPTEYYRMETVWRDPSTPTYAAKADAA---AKLFANGA 422 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccceEEecCCCCCCHHHHHHHH---HHHHhccc Confidence 2234444555666777777778776655432 2332223344 5777654433332222222 22334445 Q ss_pred hhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCcc Q lcl|Aclame:pro 428 GWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGEL 507 (533) Q Consensus 428 pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (533) +.+++.+++..+ .++++.+++-+.++++...... ... .+..+.. ..+.+.-....|..+++++- T Consensus 423 ~~~s~et~~~~l-~~~~d~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~e~~--- 486 (488) T protein:vir:23 423 GLIPRERGWVDM-GYTIVEREQMRQWLEQDQKQGL--GLI---------GSLYGAS-TPEGKPGEAPVGEPPAPEPD--- 486 (488) T ss_pred ccCCHHHHHHhC-CCCchHHHHHHHHHHHHHHHHH--HHH---------HHHhccC-CCcccCCCCCCCCCCCCCCC--- Confidence 789999988876 5566544433333222110000 000 0110000 00000000111111111111 Q ss_pred CcCccc Q lcl|Aclame:pro 508 NLGGAF 513 (533) Q Consensus 508 ~~~~~~ 513 (533) ++ T Consensus 487 ----~a 488 (488) T protein:vir:23 487 ----AA 488 (488) T ss_pred ----CC Confidence 11 No 116 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=98.51 E-value=4e-07 Score=55.65 Aligned_cols=426 Identities=12% Similarity=0.086 Sum_probs=180.9 Q ss_pred CCCcchhhhhhhHHHHHHhhccccccc-----CcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMG-----APHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDY 75 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~-----~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~ 75 (533) +|.... ..++...-+.|.+++..-. ..+-.+|.+.++- .+ .+.. +.+|.+.. T Consensus 5 i~~~~~--~~~~~~~~~~l~~~~~~~~~r~~~~~~Yy~G~~~i~~---~~---------------~~~~---~~~~~~~~ 61 (485) T protein:vir:10 5 LPGQEE--IEDPAIARDEMVSAFEDSTQNLKTNTSYYEAERRPEA---IG---------------VTVP---IQMQSLLA 61 (485) T ss_pred CCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh---cC---------------CCCC---hhhhhhhh Confidence 222110 1111111122222221110 0001222221110 00 0011 11222222 Q ss_pred cChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCC----- Q lcl|Aclame:pro 76 TDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGS----- 150 (533) Q Consensus 76 ~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~----- 150 (533) .+.-+.-+|+..+..+++-+ +...+.+-.++....|...-+|+.+..+.++..+++|+.|+....+.. T Consensus 62 ~~n~~~~ivd~~~~~l~~~g-------~~~~~~~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~ 134 (485) T protein:vir:10 62 HVGYPRLYVDSIAERQAVEG-------FRFGDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLG 134 (485) T ss_pred hcCcHHHHHHHHHhhhcccc-------eecCCCchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEeeCCcccccc Confidence 23466777777776553211 112111112223344555557899999999999999999988766532 Q ss_pred -CCCeeeeEEcCcceeeEEeeccCcEE--EE---------------Eeccccee-----ccc----CCcccccCcccEEE Q lcl|Aclame:pro 151 -DGTIEKFQVVSPYIFSKRYNPETDTW--YY---------------VITDVYRN-----VVS----GYFNEDIPEEDVIH 203 (533) Q Consensus 151 -k~gI~elr~ldP~~ik~v~d~~g~~e--~y---------------~y~~~~~~-----~~~----~~~~~~~~~~dvi~ 203 (533) .+|...++.++|+.+..++|..++.. ++ +|++...+ .+. ....+.+..=-+++ T Consensus 135 ~~~~~~~i~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~ 214 (485) T protein:vir:10 135 WDPNTPIIRVEPPTRMYAEIDPRIGRVSKAIRVAYDAEGNEIQAATLYTPNDIFGWYRVENEWQEWFNNPHGLGVVPVVP 214 (485) T ss_pred cCCCeeEEEEEccceeEEEEcCCCCceeEEEEEEEeeCCCeEEEEEEEeCCeEEEEEEcCCceEEeccccCCCCcccEEE Confidence 24555688899999999998655421 11 12221111 010 01122333335677 Q ss_pred EecCcccCcccccchhHHHHHH-HHHH-HHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeec Q lcl|Aclame:pro 204 FSHKIDTNFFPYGRSYLESARA-IWNQ-LRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVR 281 (533) Q Consensus 204 ~~~~~~~d~~~~g~s~L~~Aik-~~Nq-Lrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd 281 (533) |.++.-.. +++|.|-|.+.+. .... -+++-+..++-...--|.|-+.-.+..+.+. + T Consensus 215 ~~n~~~~~-~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~--------------------~ 273 (485) T protein:vir:10 215 IPNRTRLS-DLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGV--------------------D 273 (485) T ss_pred eccccccC-CCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHhcCCcccccc--------------------c Confidence 76543222 3577776655332 2222 2234444444444444433322111111110 0 Q ss_pred cCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChH-HHHHHHHHHHHHhcCCCeeeccCCCCccc--hh Q lcl|Aclame:pro 282 NNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLA-EDVEYMLNRLISALKVPKAFIGYEGDVNA--KN 358 (533) Q Consensus 282 ~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr--~~ 358 (533) ..+|... . -...-..|+.- +...++-.+++..++-. +-++=+-.+++..-++|..-|+... -+. +. T Consensus 274 ~~~~~~~-~------~~~~~~i~~~~---~~d~k~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~-~n~~Sg~ 342 (485) T protein:vir:10 274 PETGQTL-F------DAYLARILAFE---DAEGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLSTAA-DNPASAE 342 (485) T ss_pred ccccchh-h------hhcccceeccC---CCCceEEeecccchHHHHHHHHHHHHHHhcccCCCHHHhcccc-CchhHHH Confidence 0111100 0 00001123321 12234445555444322 2233344555666777888886432 222 23 Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhh--h--hcc-CCCccce---eEEecCCcHHHHHHHHHHHHHHHHHHHHh---- Q lcl|Aclame:pro 359 TLATQDIKFNNTIKRIQGFFVEELERMV--R--MNK-EFADQDF---RLVMNRSNSIVEGERFAVIEQRIGIAERL---- 426 (533) Q Consensus 359 eI~rde~kF~kfI~rLr~~F~~~l~~qL--i--lk~-i~t~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~~~---- 426 (533) .|..-+..+..-+.+.|+.|..-|++-+ + +.+ .-...+| ++.|.....-.... ..+++.++ T Consensus 343 Al~~~~~~l~~k~~~k~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~w~~~~~~~~~~-------~ada~~kl~~ag 415 (485) T protein:vir:10 343 AIRAAESRLIKKVERKNSIFGGAWEEAMRLAYRMMKGGDVPPDMLRMETVWRDPSTPTYAA-------KADAASKLYNGG 415 (485) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccceeeeEEecCCCCCCHHH-------HHHHHHHHHhcc Confidence 4555566677777888888886655432 2 222 2222233 56776544433222 33333433 Q ss_pred hhhhhHHHHHHHHhcCChhhhHHHHHHhhhcc-cCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCC Q lcl|Aclame:pro 427 KGWVREDWIYSNILQIPYDLKPQEEVAEAAGG-GGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGG 505 (533) Q Consensus 427 ~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (533) .+.+++..+++ +|.++++.+++-+.+++|.. ++. ...+..+.+... .+.++.+.+.+..+.+..|| T Consensus 416 ~~~~s~et~~~-~lg~~~~~~~~~~~~~ee~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 482 (485) T protein:vir:10 416 TGVIPRERARK-DMGYSIAEREEMRRWDEEEAAMGL---GLIGTMVDPNPT---------VPGSPSPAPAPKPAALESGG 482 (485) T ss_pred ccCCCHHHHHH-hCCCCHhHHHHHHHHHHHHHHHHH---HHHHHhhccCCC---------CCCCCCccccccCcCCCCCC Confidence 57899999986 47888877665444433321 100 001111111100 11111111112222222223 Q ss_pred ccCcCcc Q lcl|Aclame:pro 506 ELNLGGA 512 (533) Q Consensus 506 ~~~~~~~ 512 (533) + || T Consensus 483 ~----~~ 485 (485) T protein:vir:10 483 D----AA 485 (485) T ss_pred C----CC Confidence 2 22 No 117 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=98.49 E-value=4.7e-07 Score=55.25 Aligned_cols=458 Identities=12% Similarity=0.105 Sum_probs=191.6 Q ss_pred CCC-cchhhhhhhHHHHHHhhcccccccCccc---CCCCcccCCCCCccccch--hhc----------ccccCccccchH Q lcl|Aclame:pro 1 MPS-LEKYKKLNEAVNFTNFLSPMYGMGAPHG---AGGSSMIPINMYHPFATA--GYA----------SRFYGGIEFNRF 64 (533) Q Consensus 1 ~~~-~~~w~k~de~~~~~~~~~~~~s~~~p~~---~~gas~i~~~~~~~~~~~--~~~----------~~~ygg~~~n~~ 64 (533) ||. |..---.+-.. -++ +.-|.- -....+|..+...|.... +++ ..||.+.-.-- T Consensus 42 ~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~G- 112 (695) T protein:vir:36 42 VPADFARRGALNALD-----AAP---VVEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPG- 112 (695) T ss_pred cchhhhhcccccccc-----ccc---ccCCCcccccceeceecccccCccccchhhhhhcccccccccchhhhccCcch- Confidence 332 11100000000 000 000000 011123333322222111 111 11111111111 Q ss_pred HHHHHHHHHhhcChhHHHHHHHhhceeeecC------CCCce----eeeecccccccH-HHHHH---HHHHhhhHHHHHH Q lcl|Aclame:pro 65 FLYDMYDRMDYTDPLISTVLDIIADECTIPN------ENGNI----VDVVTKDIELAK-AILSY---LDYVINIEKNAYP 130 (533) Q Consensus 65 ~li~~YR~m~~~~PEV~~AId~Ivneaiv~d------~~~~~----v~v~l~~~e~s~-si~~~---i~~ll~f~~~~~e 130 (533) +. |=..++|+||.+++++.|+.||+-.- ....+ +++.-...+-++ ..++. -.+.|++..++.+ T Consensus 113 --y~-~la~laQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqik~L~~e~erL~V~~~l~e 189 (695) T protein:vir:36 113 --FP-TLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRT 189 (695) T ss_pred --HH-HHHHHhhccchhhHHHHHHHHhhcccceecccchhhhhhccccccccccccCchHHHHHHHHHHHHHHHHHHHHH Confidence 22 22244689999999999999996431 11110 222211112122 11222 2346788888888 Q ss_pred HHHHHhhcCceeEEEeec--C--------------CCCCeeeeEEcCcceeeEEeeccCc---EEEEEecccceecccCC Q lcl|Aclame:pro 131 IIRNMIKYGDMFLHILEK--G--------------SDGTIEKFQVVSPYIFSKRYNPETD---TWYYVITDVYRNVVSGY 191 (533) Q Consensus 131 ~~R~wyvDGr~~~~kiid--~--------------~k~gI~elr~ldP~~ik~v~d~~g~---~e~y~y~~~~~~~~~~~ 191 (533) .++.--++|.......++ + .++.++.|+.|||..+.+-.-...+ -.||-..... ..+ T Consensus 190 aik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~-V~G--- 265 (695) T protein:vir:36 190 TVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW-MIG--- 265 (695) T ss_pred HHHhhccccceEEEEEeccCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEE-Eec--- Confidence 888888888864333221 1 2456777999999988763211001 1222111111 111 Q ss_pred cccccCcccEEEEecCcccCc-----ccccchhHHHHHHHHH-HHHHHHH-HHHHHHHhccccceeeecCCC-CCchhhH Q lcl|Aclame:pro 192 FNEDIPEEDVIHFSHKIDTNF-----FPYGRSYLESARAIWN-QLRLMED-ALMLYRVVRSVDRRVFYVDVG-NVPPDKI 263 (533) Q Consensus 192 ~~~~~~~~dvi~~~~~~~~d~-----~~~g~s~L~~Aik~~N-qLrm~Ed-alVIyRi~RAPeRr~fyidvG-nlp~~kA 263 (533) .++-+..++.|...-+-+. .-.|+|.+..+..-+. -+++... +-++....-. ++..|.. -|..... T Consensus 266 --~kIH~SRL~~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~v~----~lk~dla~aL~~g~~ 339 (695) T protein:vir:36 266 --TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS----GILMDLAQALMPGAN 339 (695) T ss_pred --eEEeeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhhHH----HHHHHHHHhhcChhH Confidence 1222233333322211111 1157787777775543 3666655 3333332111 1111211 1111112 Q ss_pred HHH--HHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChHHH-HHHHHHHHHHh Q lcl|Aclame:pro 264 NEY--LTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLAED-VEYMLNRLISA 340 (533) Q Consensus 264 eqy--~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i~D-v~Yf~~kLy~a 340 (533) ++. --.++++||.+ -|-+..|+. .||| -+++| +|+-++| +.=|...+-.+ T Consensus 340 ~~l~~R~eli~~~Rsn------~G~~llDk~-------~Eef----------eq~st----slSGLddVi~qf~q~VAga 392 (695) T protein:vir:36 340 VDLSMRAELINRYRDN------RNILFLDKA-------TEEF----------FQFNT----PLSGLDALQAQAQEQMSAV 392 (695) T ss_pred HHHHHHHHHHHHhcCc------cceEEEecC-------Ccce----------EEEec----ccCCHHHHHHHHHHHHHhh Confidence 222 23566777632 222222211 1333 13333 5665655 67799999999 Q ss_pred cCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHH-HHHHHhhh-----hhhccCCCccceeEEecCCcHHHHHHHHH Q lcl|Aclame:pro 341 LKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGF-FVEELERM-----VRMNKEFADQDFRLVMNRSNSIVEGERFA 414 (533) Q Consensus 341 L~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~-F~~~l~~q-----Lilk~i~t~eew~~~f~~dn~f~E~ke~e 414 (533) .+||+.||=..+.-|-+++---|...|...|..+|.. +...|++- +-..|.+.+ +|.|.|++=..-+|..-+| T Consensus 393 a~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idp-di~~~fnPL~qmtd~EkAe 471 (695) T protein:vir:36 393 SHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDP-SIKWQWNALRELDDLEVAE 471 (695) T ss_pred hcCchhhhhccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-cceEEeCCCCCcCHHHHHH Confidence 9999999987766555556666777799999999964 55555542 223466644 7999999766666777888 Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcC--ccCCcccccCCCcc Q lcl|Aclame:pro 415 VIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLG--ERGSPIESPRGRTE 492 (533) Q Consensus 415 i~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 492 (533) |...+.+....+ + ...-++.+++.++-..+. ++-|-. ..|....|+.-.- ..+...-..+.++. T Consensus 472 I~~k~A~~d~~~---~-------~~gvI~~~evr~rL~~d~---~s~Y~~-~~D~~d~p~~~~~~~~~~~~~~~~~~~~~ 537 (695) T protein:vir:36 472 SRYKQAQSDVLY---V-------QEQVIRPDQVAARLNTEP---DGPYAG-KLDANDDPGVPADDDIDGVLTYVQRLAEG 537 (695) T ss_pred HHhhhhHHHHHH---H-------HhcCCCHHHHHHHHhcCC---Cccccc-ccccccCCCcCccchhhhhHhhhcCcccc Confidence 887777765442 1 111112222221111111 111110 0000000000000 00000001111112 Q ss_pred cccCCCCCccCCCccCcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 493 FDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) .+.|..++- .. |+-.+. +.++..-++-+.+ T Consensus 538 ~~~~~~~~~-~~------g~~~~~----~v~~~~~~~~~~~ 567 (695) T protein:vir:36 538 GDTGAPGGA-RA------GATAPP----TVANVNANVNPRE 567 (695) T ss_pred cccCCCCcc-cc------cccCCC----cccccccccCccc Confidence 222221110 00 111110 1111111111111 No 118 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=98.48 E-value=5e-07 Score=55.12 Aligned_cols=333 Identities=11% Similarity=0.058 Sum_probs=154.0 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) .|+-.+|+...+..-.+.=+...|+|+-|...-..+.+ .+-......+.+|..-+ +...|-+-+|.- |.- T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~-----~~y~~~~~~~~~~~pp~-~~~~la~~~~~~----~~h 80 (350) T protein:vir:11 11 QPVTVQSAQEGEFIPRQGGRAEAFTFGDPMPVLDGRGI-----LDYLECWPNGRWYEPPL-SMEGLAKSVGSS----VYL 80 (350) T ss_pred CccccCCcchhhhccccccceEEEEeCCceeecCcchh-----hHHHHHhhcCccccCCC-CHHHHHHHHhhh----hhh Confidence 33333444444443333334455565433321111111 11111222333333323 333455555532 233 Q ss_pred HHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEc Q lcl|Aclame:pro 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVV 160 (533) Q Consensus 81 ~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~l 160 (533) .+||.--.|-... .+ .-+..++.. .| ...+..|++.|+.|+.++.+. .+.+.+|..| T Consensus 81 ~~~l~~k~n~l~~-~~--------~Pn~~~t~~---------~f----~~~v~d~ll~Gnay~~~~rn~-~G~~~~L~~l 137 (350) T protein:vir:11 81 QSGLKFKRNMLAK-TF--------IPHRLLSRA---------TF----EQFSLDWLTFGSAYLEQPRSR-LGTRMPLQAP 137 (350) T ss_pred ccchhhhhhhhhh-cc--------cCCCCCCHH---------HH----HHHHHHHHhcCCeEEEEEEcC-CCCEEEEEEe Confidence 4444333332110 00 011112222 12 345678899999999998864 4568999999 Q ss_pred CcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 SPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLY 240 (533) Q Consensus 161 dP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIy 240 (533) +|.+|++..+.. . ||.+.. ++....+++++|+|+..-.+.+ +-||+|-+..|+..+..-...+....-| T Consensus 138 ~~~~vr~~~~~~--~-~~~~~~-------~~~~~~~~~~eVihir~~~~~~-~~yGls~~~~a~~si~l~~~a~~~~~~~ 206 (350) T protein:vir:11 138 LAKYMRRGTDLE--T-FYQVRS-------WKDEHEFEKGSVIQLREADINQ-EIYGVPEWFCALQSALLNESATLFRRKY 206 (350) T ss_pred CCceeEeeecCC--e-EEEEee-------CCeEEEECcccEEEeCCCCCCC-CcccccHHHHHHHHHHHHHHHHHHHHHH Confidence 999998766543 2 443432 2345678899999997533322 3489998888877766433333221111 Q ss_pred HHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccC-CCcceeeec Q lcl|Aclame:pro 241 RVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGD-RRAVEIDIL 319 (533) Q Consensus 241 Ri~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g-~~gtEi~TL 319 (533) =---|--.-|+|+.-.++ ..++.+-++.-+...+ |. .|..+ + ++.-.+| ..|.++.-| T Consensus 207 f~NGa~~~gil~~~~~~l-s~e~~~~l~~~~~~~~---------G~----~N~~~-~------~v~~~~g~~~g~~~~pl 265 (350) T protein:vir:11 207 YNNGSHAGFILYMTDAAQ-NEEDIDALRTALKTAK---------GP----GNFRN-L------FVYAPNGKKEGIQLIPV 265 (350) T ss_pred HhccCCCceEEEecCCCC-CHHHHHHHHHHHHHhc---------Cc----cccCc-e------eeecCCCCccceEEEEc Confidence 111122244555543344 3344444444443322 11 11100 1 1111122 235566544 Q ss_pred CCCCCCh---HHHHHHHHHHHHHhcCCCeeeccCCCC-ccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCc Q lcl|Aclame:pro 320 QGSKVDL---AEDVEYMLNRLISALKVPKAFIGYEGD-VNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFAD 394 (533) Q Consensus 320 pG~nlg~---i~Dv~Yf~~kLy~aL~VP~srl~~~~~-~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~ 394 (533) .- ...+ ++=-++-.+.+.++.+||...|+.-++ .+..+.+.-....|.+ -|.-++.+|+++.. -|. + T Consensus 266 ~~-~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~L~P~~~~ie~ln~-~l~------~ 337 (350) T protein:vir:11 266 SE-VAAKDEFGSIKNISRDDQLAGLRVYPQLMGVVPQNAGGFGSISDAAAVWASLELAPMQTRLQQVNE-MIG------E 337 (350) T ss_pred CC-ChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHh-hcC------c Confidence 21 1111 111335566699999999999985332 2222233333334433 57777788876433 231 1 Q ss_pred cceeE-EecCCcH Q lcl|Aclame:pro 395 QDFRL-VMNRSNS 406 (533) Q Consensus 395 eew~~-~f~~dn~ 406 (533) +..+| .|.-+.- T Consensus 338 ~~~~F~~~~~~~l 350 (350) T protein:vir:11 338 EVVRFAQFDAPGL 350 (350) T ss_pred cccccCcccccCC Confidence 11111 1222222 No 119 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=98.44 E-value=6.4e-07 Score=54.55 Aligned_cols=337 Identities=11% Similarity=0.056 Sum_probs=160.9 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchh-hcccccCccccchHHHHHHHHHHhhcChhHHH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAG-YASRFYGGIEFNRFFLYDMYDRMDYTDPLIST 82 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~-~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~ 82 (533) +|..++.+.....+.-......|+.++ +++....+...... -++.+|..-+ +...|-+-+|.-. .| .+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~f~~~~------~~~~~~~~y~~~~~~~~~~~~epp~-~~~~la~l~~~~~-~h---~~ 69 (345) T protein:vir:37 1 MKTNVKTDNKKGIVIAPINDRTFSLNE------ISASPALDYVGIGFDENYNCYLPPV-NRHALAKLPHQNA-QH---GG 69 (345) T ss_pred CCCCccccchhhcccCcceeEEeecCC------cccccchhhhhhhhcCCccccCCCC-CHHHHHHHhhccc-cc---cc Confidence 777777776654444334443343331 12211112211111 1222333222 4555666666422 23 22 Q ss_pred HHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCc Q lcl|Aclame:pro 83 VLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSP 162 (533) Q Consensus 83 AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP 162 (533) || ....|...... .-+..++.. .| ...+..+++.|+.|+.++.+. .+.+.+|..|+| T Consensus 70 ~i--------~~k~n~l~~~~-~Pn~~lt~~---------~f----~~~~~d~ll~Gnay~~~~rn~-~G~~~~L~pl~~ 126 (345) T protein:vir:37 70 IL--------HSRANMVSSLY-EGGKALSRM---------DM----RALCLNLIQFGDVGLLKVRNG-FGQVVRLVPLSS 126 (345) T ss_pred ce--------eeechHHHhhc-cCCCCCCHH---------HH----HHHHHHHHhcCCeEEEEEEcC-CCcEEEEEEEcC Confidence 22 11111100000 011112221 12 345668889999999988764 467999999999 Q ss_pred ceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 163 YIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRV 242 (533) Q Consensus 163 ~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi 242 (533) ..|++..+... +|.+... ....++....+++.+|+|+..-...+ +-||+|-+..|++.+..-...+.- ..+. T Consensus 127 ~~vr~~~d~~~---~~~~~~~--~~~~~g~~~~~~~~dVihir~~~~~~-~~~Gls~~~~a~~si~l~~~a~~~--~~~~ 198 (345) T protein:vir:37 127 LYLRVRKDGGY---SYLMKKS--LYDTAQEIYRYDAKDIIFIKLYDPMQ-QVYGSPDYVGGIQSALLNSDATVF--RRRY 198 (345) T ss_pred ceeEEEEeCCe---eEEEEEe--EecCCceEEEEccccEEEecCCCCCC-CcccccHHHHHHHHHHHHHHHHHH--HHHH Confidence 99987665433 2222111 11223455678899999996322222 349999888887776543333321 1122 Q ss_pred hc--cccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecC Q lcl|Aclame:pro 243 VR--SVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQ 320 (533) Q Consensus 243 ~R--APeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLp 320 (533) .+ |--.-|+|+.-.++- .++.+-+++-+..++ |. .|.. .+-++ .| -....|+++.-|. T Consensus 199 f~NG~~p~~Il~~~d~~l~-~e~~~~lk~~~~~~~---------g~----~n~~-~~~i~----~p-~g~~~G~~~~pls 258 (345) T protein:vir:37 199 FSNGAHMGFILYSTDPDLT-EEMEEEIARKISESK---------GV----GNFR-SMFVN----IA-NGHPDGLKVIPIG 258 (345) T ss_pred HhccCCcceEEEecCCCCC-HHHHHHHHHHHHHhc---------Cc----cccc-ceEEE----cC-CCcccceEEEEcc Confidence 22 223455555434443 333333333333322 10 1110 01111 01 0112355555442 Q ss_pred CCCC--ChHHH-HHHHHHHHHHhcCCCeeeccCCCC-ccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCcc Q lcl|Aclame:pro 321 GSKV--DLAED-VEYMLNRLISALKVPKAFIGYEGD-VNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQ 395 (533) Q Consensus 321 G~nl--g~i~D-v~Yf~~kLy~aL~VP~srl~~~~~-~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~e 395 (533) - .. .+.-+ -++-.+.+.++.+||...|+..++ .+-.+.+.-....|.+ -|.-++.+|.+.|.+-+- ... T Consensus 259 ~-~~~d~qf~e~k~~~~~dIa~a~~VPp~llGi~~~~~~~~~~~e~~~~~f~~~~l~P~~~~ie~~ln~~~~-----~~~ 332 (345) T protein:vir:37 259 D-TGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEVMPLQEIIAETINQDPE-----IKN 332 (345) T ss_pred C-ChhHHHHHHHHHHhHHHHHHHhCCCHHHhCccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----CCC Confidence 1 11 12211 346778899999999999976432 2222334333444544 678888899988865321 122 Q ss_pred ceeEEecCCcHHHH Q lcl|Aclame:pro 396 DFRLVMNRSNSIVE 409 (533) Q Consensus 396 ew~~~f~~dn~f~E 409 (533) ...+.|..++. ++ T Consensus 333 ~~~i~F~~~~L-~~ 345 (345) T protein:vir:37 333 LLKIKFREQNF-AK 345 (345) T ss_pred cceEEecchhh-cC Confidence 33445544332 11 No 120 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=98.44 E-value=6.4e-07 Score=54.53 Aligned_cols=465 Identities=11% Similarity=0.075 Sum_probs=190.1 Q ss_pred CCC-cchhhhhhhHHH-------HHHhhccccccc-CcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHH Q lcl|Aclame:pro 1 MPS-LEKYKKLNEAVN-------FTNFLSPMYGMG-APHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYD 71 (533) Q Consensus 1 ~~~-~~~w~k~de~~~-------~~~~~~~~~s~~-~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR 71 (533) ||- +..--..++... -+.=++++|-+- .+-.....+.-+-.+.. .++..-+..||.+.-.-- +. |= T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~F~G---y~-~l 115 (694) T protein:vir:10 41 VPADFARRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDF-NGTSMDALSFVTSSGFPG---FP-TL 115 (694) T ss_pred ccCCccccccchhhcccccCCCCcchhhhhhccccccCCCccccchhhhhhcc-CcccccchhhhhccCcch---HH-HH Confidence 111 000000000000 000011111110 00000000111111110 011111112222211111 22 22 Q ss_pred HHhhcChhHHHHHHHhhceeeecC------CCCce----eeeecccccccH-HHHHH---HHHHhhhHHHHHHHHHHHhh Q lcl|Aclame:pro 72 RMDYTDPLISTVLDIIADECTIPN------ENGNI----VDVVTKDIELAK-AILSY---LDYVINIEKNAYPIIRNMIK 137 (533) Q Consensus 72 ~m~~~~PEV~~AId~Ivneaiv~d------~~~~~----v~v~l~~~e~s~-si~~~---i~~ll~f~~~~~e~~R~wyv 137 (533) ..++|+||.+++++.|+.||+-.- ....+ +++.-...+.++ ..++. -++.|++..++.+.++.--+ T Consensus 116 a~laQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eaik~aRl 195 (694) T protein:vir:10 116 VLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQA 195 (694) T ss_pred HHHhhccchhhHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc Confidence 244689999999999999996431 11110 122111111122 12222 34567888888888888888 Q ss_pred cCceeEEEeec--C--------------CCCCeeeeEEcCcceeeEEeeccCc---EEEEEecccceecccCCcccccCc Q lcl|Aclame:pro 138 YGDMFLHILEK--G--------------SDGTIEKFQVVSPYIFSKRYNPETD---TWYYVITDVYRNVVSGYFNEDIPE 198 (533) Q Consensus 138 DGr~~~~kiid--~--------------~k~gI~elr~ldP~~ik~v~d~~g~---~e~y~y~~~~~~~~~~~~~~~~~~ 198 (533) +|.......++ + .++.++.|+.|||..+.+-.-...+ -.||-..... ..+ .++-+ T Consensus 196 fGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~-V~G-----~~IH~ 269 (694) T protein:vir:10 196 FGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW-MIG-----TEVHA 269 (694) T ss_pred ccceEEEEEeecCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEE-Eec-----eEEee Confidence 88864333221 1 2456777999999988763211001 1222111111 111 12222 Q ss_pred ccEEEEecCcccCc-----ccccchhHHHHHHHHH-HHHHHHH-HHHHHHHhccccceeeecCCC-CCchhhHHHH--HH Q lcl|Aclame:pro 199 EDVIHFSHKIDTNF-----FPYGRSYLESARAIWN-QLRLMED-ALMLYRVVRSVDRRVFYVDVG-NVPPDKINEY--LT 268 (533) Q Consensus 199 ~dvi~~~~~~~~d~-----~~~g~s~L~~Aik~~N-qLrm~Ed-alVIyRi~RAPeRr~fyidvG-nlp~~kAeqy--~~ 268 (533) ..++.|...-+-+. .-.|+|.+..+..-+. -+++... +-++....- +++..|.. -|......+. -- T Consensus 270 SRL~~f~g~plPd~LKp~y~~~G~Sv~q~~~e~V~~~~rT~~~v~~Li~~~~v----~~lk~dla~~L~~g~~~~l~~R~ 345 (694) T protein:vir:10 270 TRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV----SGILMDLAQALMPGANVDLSMRA 345 (694) T ss_pred eeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhhh----HHHHHHHHHhhcChhHHHHHHHH Confidence 33333322211111 1157787777775543 3666655 333332111 11112211 1111112222 23 Q ss_pred HHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChHHH-HHHHHHHHHHhcCCCeee Q lcl|Aclame:pro 269 NIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLAED-VEYMLNRLISALKVPKAF 347 (533) Q Consensus 269 ~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i~D-v~Yf~~kLy~aL~VP~sr 347 (533) .++++||.+ -|-+..|+. .||| -+++| +|+-++| +.=|...+-.+.+||+.| T Consensus 346 eli~~~Rsn------~G~~llDk~-------~Eef----------eq~st----slSGLddVi~qf~q~VAgaa~IPltk 398 (694) T protein:vir:10 346 ELINRYRDN------RNILFLDKA-------TEEF----------FQFNT----PLSGLDALQAQAQEQMSAVSHIPLIK 398 (694) T ss_pred HHHHHhcCc------cceEEEecC-------Ccce----------EEEec----ccCCHHHHHHHHHHHHHhhhcCchhh Confidence 566777632 222222211 1333 13333 5665655 677999999999999999 Q ss_pred ccCCCCccchhhhhHHHHHHHHHHHHHHHH-HHHHHhhh-----hhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 348 IGYEGDVNAKNTLATQDIKFNNTIKRIQGF-FVEELERM-----VRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIG 421 (533) Q Consensus 348 l~~~~~~gr~~eI~rde~kF~kfI~rLr~~-F~~~l~~q-----Lilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~ 421 (533) |=..+.-|-+++---|...|...|..+|.. +...|++- +-..|.+.+ +|.|.|++=..-+|..-+||...+.+ T Consensus 399 LfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idp-~i~~~fnPL~qmtd~EkAeI~~k~A~ 477 (694) T protein:vir:10 399 LLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDP-SIKWQWNALRELDDLEVAESRYKQAQ 477 (694) T ss_pred hhccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-cceEEeCCCCCcCHHHHHHHHhhhhH Confidence 977766555556666777799999999964 55555542 223466644 79999997666667778888877777 Q ss_pred HHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcC--ccCCcccccCCCcccccCCCC Q lcl|Aclame:pro 422 IAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLG--ERGSPIESPRGRTEFDFGTEG 499 (533) Q Consensus 422 ~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 499 (533) ....+ + ...-++.+++.++-..+. ++-|-. ..|....|+.-.- ..+...-..+.++..+.|..+ T Consensus 478 ~d~~~---~-------~~gvI~~~evr~rL~~d~---~s~Y~~-~~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (694) T protein:vir:10 478 SDVLY---V-------QEQVIRPDQVAARLNTEP---DGPYAG-KLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPG 543 (694) T ss_pred HHHHH---H-------HhcCCCHHHHHHHHhcCC---Cccccc-ccccccCCCcCccchhhhhHhhhcCcccccccCCCC Confidence 65442 1 111112222221111111 111110 0000000000000 000000011111122222211 Q ss_pred CccCCCccCcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 500 GEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) +- .. |+-.+ -+.++..-++-+.+ T Consensus 544 ~~-~~------g~~~~----~~v~~~~~~~~~~~ 566 (694) T protein:vir:10 544 GA-RA------GATAP----PTVANVNANVNPRE 566 (694) T ss_pred cc-cc------cccCC----CcccccccccCccc Confidence 10 00 11111 01111111111111 No 121 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=98.42 E-value=7.5e-07 Score=54.18 Aligned_cols=431 Identities=10% Similarity=0.059 Sum_probs=186.6 Q ss_pred CCC-cchhhhhh-hHHHHHHhhcccccccCcc------cCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHH Q lcl|Aclame:pro 1 MPS-LEKYKKLN-EAVNFTNFLSPMYGMGAPH------GAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDR 72 (533) Q Consensus 1 ~~~-~~~w~k~d-e~~~~~~~~~~~~s~~~p~------~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~ 72 (533) |+| +.-+...+ ..+.-..|.+++..- .|+ -.+|.+.|.- -+ . +.. +.+|. T Consensus 1 ~~~~~~~~~e~~~~~~~~~~l~~~~~~~-~~r~~~l~~YY~G~~~i~~---~~-------------~--~~~---~~~~~ 58 (486) T protein:vir:42 1 MTAPLPGMEEIEDPAVVREEMISAFEDA-SKDLASNTSYYDAERRPEA---IG-------------V--TVP---REMQQ 58 (486) T ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCcchh---cc-------------c--ccc---hhHhh Confidence 555 22222211 122222333332221 122 1344333321 00 0 000 11222 Q ss_pred HhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecC--- Q lcl|Aclame:pro 73 MDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKG--- 149 (533) Q Consensus 73 m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~--- 149 (533) +.....-+.-+|+..+...+.-+ +...+.+-.++....|.+.-+|+....+.++..+++|+.|++.-.+. T Consensus 59 ~~~v~n~~~~iVd~~~~~l~~~g-------~~~~~~~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~e~~~ 131 (486) T protein:vir:42 59 LLAHVGYPRLYVDSVAERQAVEG-------FRLGDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSFITISKPDPQL 131 (486) T ss_pred hhhccchHHHHHHHHHhhhcccc-------eecCCCchhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCccc Confidence 21223567778888776554322 22222222333344455555799999999999999999999886653 Q ss_pred ---CCCCeeeeEEcCcceeeEEeeccCcE--E---------------EEEecccceec---ccC------CcccccCccc Q lcl|Aclame:pro 150 ---SDGTIEKFQVVSPYIFSKRYNPETDT--W---------------YYVITDVYRNV---VSG------YFNEDIPEED 200 (533) Q Consensus 150 ---~k~gI~elr~ldP~~ik~v~d~~g~~--e---------------~y~y~~~~~~~---~~~------~~~~~~~~~d 200 (533) ..+|...++.+||+.+-.++|...+. . .-+|++...+. ..+ ...+.+..=- T Consensus 132 ~~~~~~~~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vP 211 (486) T protein:vir:42 132 DLGWDQNVPIIRVEPPTRMHAEIDPRINRVSKAIRVAYDKEGNEIQAATLYTPMETIGWFRADGEWAEWFNVPHGLGVVP 211 (486) T ss_pred ccccCCCeeEEEEecccceEEEEeCCCCCeEEEEEEEEecCCCeEEEEEEEcCCcEEEEEecCCcEEeecceecCCCCce Confidence 23566778999999999998854431 1 11222221110 000 1112222234 Q ss_pred EEEEecCcccCcccccchhHHHHH----HHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhh Q lcl|Aclame:pro 201 VIHFSHKIDTNFFPYGRSYLESAR----AIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKR 276 (533) Q Consensus 201 vi~~~~~~~~d~~~~g~s~L~~Ai----k~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~kn 276 (533) ++.|..+- ..-+++|.|-|.+.+ ..+|. .+-+..++-...-.|.|-+.-.+....+. + .-+. T Consensus 212 vv~~~n~~-~~~~~~G~s~i~~~v~~liDa~~~--~~s~~~~~~e~~a~p~~~i~G~~~~~~~~---~--------~~~~ 277 (486) T protein:vir:42 212 VVPLPNRT-RLSDLYGTSEITPELRSMTDAAAR--ILMLMQATAELMGVPQRLIFGIKPEEIGV---D--------SETG 277 (486) T ss_pred EEEecccc-ccCCCCCcccchhhHHHHHHHHHH--HHHHHHHHHHhhcchHHHhhcCCcccccc---c--------cccc Confidence 56665432 212346666554422 22222 12233333233322333222111111000 0 0000 Q ss_pred ceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCCh-HHHHHHHHHHHHHhcCCCeeeccCCCCcc Q lcl|Aclame:pro 277 DYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDL-AEDVEYMLNRLISALKVPKAFIGYEGDVN 355 (533) Q Consensus 277 k~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~-i~Dv~Yf~~kLy~aL~VP~srl~~~~~~g 355 (533) +.+.+...| ..|..-.+ ..++..+++.++.- ++-++-+-.++...-++|..-|+.... + T Consensus 278 ~~~~~~~~~----------------~~~~~~~~---~~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~-n 337 (486) T protein:vir:42 278 QTLFDAYLA----------------RILAFEDA---EGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLSTAAD-N 337 (486) T ss_pred cchhhhhhc----------------hhcccCCC---CceEEeecccCHHHHHHHHHHHHHHHhcccCCCHHHhccccC-c Confidence 111111111 12322111 23455666655542 233455555666667888777764322 2 Q ss_pred c--hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh----hccCC-Cccc---eeEEecCCcHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 356 A--KNTLATQDIKFNNTIKRIQGFFVEELERMVR----MNKEF-ADQD---FRLVMNRSNSIVEGERFAVIEQRIGIAER 425 (533) Q Consensus 356 r--~~eI~rde~kF~kfI~rLr~~F~~~l~~qLi----lk~i~-t~ee---w~~~f~~dn~f~E~ke~ei~~~R~~~~~~ 425 (533) . +..|.--+..+..-+.+.|..|...|++-+. +.+.. .+.+ .++.|.....-.....++.+. .+.+. T Consensus 338 ~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~~~d~~~i~v~w~~~~~~s~~~~ad~~~---kl~~~ 414 (486) T protein:vir:42 338 PASAEAIRAAESRLIKKVERKNLMFGGAWEEAMRIAYRIMKGGDVPPDMLRMETVWRDPSTPTYAAKADAAT---KLYGN 414 (486) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeeEEecCCCCCCHHHHHHHHH---HHHhc Confidence 2 2234445555666777778888766554432 23322 2223 357776554433333333322 23344 Q ss_pred hhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCC Q lcl|Aclame:pro 426 LKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGG 505 (533) Q Consensus 426 ~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (533) ..+.+++.+++ .+|.++++.+++-+++++|...... .....-.+.....+ ....+++ T Consensus 415 ~~g~~s~et~~-~~lg~~~d~~~e~~~~~~e~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~------------- 471 (486) T protein:vir:42 415 GQGVIPRERAR-IDMGYSVKEREEMRRWDEEEAAMGL-------GLLGTMVDADPTVP--GSPSPTA------------- 471 (486) T ss_pred ccCCCCHHHHH-hcCCCChhHHHHHHHHHHHHHHHHH-------HHHHHhhcCCCCCC--CCCCCCC------------- Confidence 45889999887 4688888777665555554321100 00000000000000 0000001 Q ss_pred ccCcCcccCCchhhcCCcc Q lcl|Aclame:pro 506 ELNLGGAFEEFEEETGGGE 524 (533) Q Consensus 506 ~~~~~~~~~~~~~~~g~~~ 524 (533) ..++++...++||.. T Consensus 472 ----~~~~~~~~~~~~~~~ 486 (486) T protein:vir:42 472 ----PPKPQPAIESSGGDA 486 (486) T ss_pred ----CCCCCcccCCCCCCC Confidence 112223323333332 No 122 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=98.41 E-value=7.6e-07 Score=54.13 Aligned_cols=383 Identities=13% Similarity=0.097 Sum_probs=171.0 Q ss_pred hcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCc Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGN 99 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~ 99 (533) |- +++.-.++.+-|..-+.- ..+........ ...+. + .+...|.|..+|..|++.+-.+ T Consensus 1 mg-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~~t~---~----~~~~~~~v~~cv~~Ia~~ia~~----- 59 (403) T protein:vir:10 1 MG-FKSWITEKLNPGQRIIRD--MEPVSHRTNRK------PFTTG---Q----AYSKIEILNRTANMVIDSAAEC----- 59 (403) T ss_pred Cc-chhhhhhccchhhhhhhc--ccccccccCCc------ccccH---H----HHHHHHHHHHHHHHHHHHHhhC----- Confidence 33 455444443322111111 11111000000 11111 1 1224688999999999753321 Q ss_pred eeeeeccccc--ccHH-HHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEE Q lcl|Aclame:pro 100 IVDVVTKDIE--LAKA-ILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKR 168 (533) Q Consensus 100 ~v~v~l~~~e--~s~s-i~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v 168 (533) |+.|--+... -.+. +...+..+| .-....+.++..++..|+.|.++. | .++..|+|..+.+. T Consensus 60 p~~v~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~------~-~~l~~l~~~~~~v~ 132 (403) T protein:vir:10 60 SYTVGDKYNIVTYANGVKTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWD------G-TSLYHVPAALMQVE 132 (403) T ss_pred ceeEeecccccccccccccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEe------C-ceeEeecCcceEEE Confidence 1111100000 0000 111223333 335567778888999999987642 2 25889999999887 Q ss_pred eeccCcEEEEEecccceecccCCcccccCcccEEEEecCccc---CcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 169 YNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDT---NFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRS 245 (533) Q Consensus 169 ~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~---d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RA 245 (533) .+..+...+|.++.. ..+++++++|+....+. ..+.+|+|-+..|++.++.-..+++...-+ ... T Consensus 133 ~~~~~~~~~~~~~~~----------~~~~~~eiih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~--f~n 200 (403) T protein:vir:10 133 ADANKFIKKFIFNNQ----------INYRVDEIIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKF--LDN 200 (403) T ss_pred EcCCceEEEEEecCc----------eeecccceEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH--Hhc Confidence 776655555544321 23567899999743321 123589999999999888887777744322 222 Q ss_pred ccceeeecCCC-CCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecC--CC Q lcl|Aclame:pro 246 VDRRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQ--GS 322 (533) Q Consensus 246 PeRr~fyidvG-nlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLp--G~ 322 (533) --++-..+.+. .|-+.++++..+.+...|. -..+.|.+. .|+ + |.+++.|. .. T Consensus 201 g~~~~gil~~~~~l~~e~~~~~~~~~~~~~~----g~~n~g~~~----------vl~-------~---g~~~~~~~~~~~ 256 (403) T protein:vir:10 201 GTVIGLILETDEILNKKLRERKQEELQLDYN----PSTGQSSVL----------ILD-------G---GMKAKPYSQISS 256 (403) T ss_pred cCCcceEEEeCCCCCHHHHHHHHHHHHHHhC----CcccCccee----------ecC-------C---CceeEEecccCC Confidence 22333344443 4544444433333333321 112223321 111 1 33444332 11 Q ss_pred --CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCccceeE Q lcl|Aclame:pro 323 --KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFRL 399 (533) Q Consensus 323 --nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~eew~~ 399 (533) .+..++..+|....+.+++|||...|+. +++ +.+.-+.+.|.++ |.-+-+++.+.|...|. -.+.+ T Consensus 257 ~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-~~~---sn~e~~~~~f~~~tl~P~~~~ie~~l~~~L~-------~~~~~ 325 (403) T protein:vir:10 257 FKDLDFKEDIEGFNKSICLAFGVPQVLLDG-GNN---ANIRPNIELFYYMTIIPMLNKLTSSLTFFFG-------YKITP 325 (403) T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHcCC-CCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------ceeee Confidence 3444677889999999999999999973 222 2333344456553 44444566666766552 12333 Q ss_pred EecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCc Q lcl|Aclame:pro 400 VMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGE 479 (533) Q Consensus 400 ~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~ 479 (533) ++....+ +.. =.+.|.+.++.+ -+..-||..|.-+. ++-.++. ++..++-..|....+ T Consensus 326 d~~~~~~---l~~--D~~~~~~~~~~~----------~~~G~lT~NE~R~~-----~gl~pi~-~~~~d~~~~p~n~~~- 383 (403) T protein:vir:10 326 NTKEVAA---LTP--DKEAEAKHLTSL----------VNNGIITGNEARSE-----LNLEPLD-DEQMNKIRIPANVAG- 383 (403) T ss_pred ccchhhh---ccc--CHHHHHHHHHHH----------HhCCCcCHHHHHHH-----hCCCCCC-ccccccccccccccc- Confidence 3321111 100 013344443331 13344665332221 1222221 112222222211110 Q ss_pred cCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccC Q lcl|Aclame:pro 480 RGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEE 526 (533) Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (533) ...|..+ |. ++.+.++ .+.+ T Consensus 384 ----~~~~~~~-----~e-~~~~~~~-----------------~~g~ 403 (403) T protein:vir:10 384 ----SATGVSG-----QE-GGRPKGS-----------------TEGD 403 (403) T ss_pred ----ccccCCC-----Cc-CCCCCCC-----------------cCCC Confidence 0111100 00 0000000 0000 No 123 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=98.40 E-value=8.5e-07 Score=53.86 Aligned_cols=376 Identities=10% Similarity=0.083 Sum_probs=153.4 Q ss_pred HHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCC Q lcl|Aclame:pro 17 TNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNE 96 (533) Q Consensus 17 ~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~ 96 (533) =.|.+.+|+- +... + . .+ ....+..+ +.+.+...|.|.+||+.|++.+-.. T Consensus 1 Mg~f~~lf~~----~~~~------~---~-~~----~~~~~~~v---------~~~~~~~~~~v~~~i~~Ia~~iA~~-- 51 (395) T protein:vir:95 1 MSILEKIFKT----RKDI------T---Y-ML----DLDMIEDL---------SQQAYVKRLAIDSCIEFVARAVAQS-- 51 (395) T ss_pred Cchhhhhhcc----Cccc------c---c-cc----cchhcccc---------chhhhhhhHHHHHHHHHHHHhhccc-- Confidence 1111222221 1100 0 0 00 00001111 1123345789999999999885432 Q ss_pred CCceeeeecccccccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEE Q lcl|Aclame:pro 97 NGNIVDVVTKDIELAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKR 168 (533) Q Consensus 97 ~~~~v~v~l~~~e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v 168 (533) |+.+--++ +.. ...+..+| .-....+..+..++.+|..|. .+.+. ++ +..+++..+.++ T Consensus 52 ---p~~~~~~~-~~~---~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~-~~~~~--~~---~~~~~~~~~~~~ 118 (395) T protein:vir:95 52 ---HFKVLEGN-RIQ---KNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLI-VVSDS--KE---LLIADSFYREEY 118 (395) T ss_pred ---eeEeccCC-ccc---cchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEE-EEecC--CC---eEecCCccceeE Confidence 21111111 111 12233333 223455667777788887554 33322 22 345566555554 Q ss_pred eeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccc Q lcl|Aclame:pro 169 YNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDR 248 (533) Q Consensus 169 ~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeR 248 (533) +........+.+.. ......+++.++||+......+. .+|+|-|+.|.+..... +-.++-- +-.+ T Consensus 119 ~~~~~~~~~~~~~~-------~~~~~~~~~~evih~~~~~~~~~-~~G~spi~~~~~~~~~~------~~~~~~~-~~~~ 183 (395) T protein:vir:95 119 ALYDDIFKDVTVKD-------YTYQRTFTMQEVIYLKYNNNKVT-HFVESLFEDYGKIFGRM------IGAQLKN-YQIR 183 (395) T ss_pred eecCcceeEEEEcC-------ceeeeeeccccEEEEccCCCCcc-cccchHHHHHHHHHHHH------HHHHHhc-CCCc Confidence 43322111221111 12234578999999986554443 58988888766554322 1122221 1112 Q ss_pred eeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC----CC Q lcl|Aclame:pro 249 RVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS----KV 324 (533) Q Consensus 249 r~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~----nl 324 (533) -++.++ +.+...++.+-++..+.++.+-. ++..+.| +. + +.|.+++.|.-. ++ T Consensus 184 gii~~~-~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~v---------~~-l----------~~g~~~~~l~~~~~~~~~ 240 (395) T protein:vir:95 184 GILKSA-SSAYDEKNIEKLQAFTNKLFNTF--NKNQLAI---------AP-L----------IEGFDYEELSNGGKNSNM 240 (395) T ss_pred eEEEeC-CCCCCHHHHHHHHHHHHHHhccc--cccCcce---------EE-c----------CCCceeeeccccccccch Confidence 233333 33444555555555555533210 1111101 00 1 123444444211 22 Q ss_pred Ch---HHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCcccee-- Q lcl|Aclame:pro 325 DL---AEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFR-- 398 (533) Q Consensus 325 g~---i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~-- 398 (533) .+ ++=.+|-.+.+.++.+||.+.|+. ++ +.+.-....|.+ -|.-+..++++.|.+.|+. ++++. T Consensus 241 ~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~--~~---sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~-----~~~~~~~ 310 (395) T protein:vir:95 241 PFSELSELMRDAIKNVALMIGIPPGLIYG--ET---ADLEKNTLVFEKFCLTPLLKKIQNELNAKLIT-----QSMYLKD 310 (395) T ss_pred hHHHHHHHHHHHHHHHHHHhCCCHHHhcC--cc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----hhhhccc Confidence 22 222456678899999999999963 22 223333344555 4566666777878777754 33331 Q ss_pred EEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcC Q lcl|Aclame:pro 399 LVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLG 478 (533) Q Consensus 399 ~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~ 478 (533) +.|. +..+-... .++|.+++..+- +..-||..|.-.. ++-.++. .+..|+-..+..-.+ T Consensus 311 ~~f~----~~~l~~~D-~~~~~~~~~~~~----------~~G~lt~NE~R~~-----~g~~p~~-~g~~d~~~~~~n~~~ 369 (395) T protein:vir:95 311 TRIE----IVGVNKKD-PLQYAEAIDKLV----------SSGSFTRNEVRIM-----LGEEPSD-NPELDEYLITKNYEK 369 (395) T ss_pred ceec----chhhhccC-HHHHHHHHHHHH----------hCCCcCHHHHHHH-----hCCCCCC-CCCCceeeecccccc Confidence 2232 22332222 334555554421 2233554332111 1111111 111122111110000 Q ss_pred c-cCCcccccCCCcccccCCCCCccCCCc Q lcl|Aclame:pro 479 E-RGSPIESPRGRTEFDFGTEGGEELGGE 506 (533) Q Consensus 479 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (533) . .....+.+... -...|-+.++ -|+ T Consensus 370 ~~~~~~~~~~~~~-~~~kgg~~~~--~g~ 395 (395) T protein:vir:95 370 ANSGENDEKEKDE-NTLKGGDEDE--SGD 395 (395) T ss_pred ccccccccCcccc-cccCCCCCCC--CCC Confidence 0 00000001100 0111111111 133 No 124 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=98.40 E-value=8.5e-07 Score=53.86 Aligned_cols=376 Identities=10% Similarity=0.083 Sum_probs=153.4 Q ss_pred HHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCC Q lcl|Aclame:pro 17 TNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNE 96 (533) Q Consensus 17 ~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~ 96 (533) =.|.+.+|+- +... + . .+ ....+..+ +.+.+...|.|.+||+.|++.+-.. T Consensus 1 Mg~f~~lf~~----~~~~------~---~-~~----~~~~~~~v---------~~~~~~~~~~v~~~i~~Ia~~iA~~-- 51 (395) T protein:vir:10 1 MSILEKIFKT----RKDI------T---Y-ML----DLDMIEDL---------SQQAYVKRLAIDSCIEFVARAVAQS-- 51 (395) T ss_pred Cchhhhhhcc----Cccc------c---c-cc----cchhcccc---------chhhhhhhHHHHHHHHHHHHhhccc-- Confidence 1111222221 1100 0 0 00 00001111 1123345789999999999885432 Q ss_pred CCceeeeecccccccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEE Q lcl|Aclame:pro 97 NGNIVDVVTKDIELAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKR 168 (533) Q Consensus 97 ~~~~v~v~l~~~e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v 168 (533) |+.+--++ +.. ...+..+| .-....+..+..++.+|..|. .+.+. ++ +..+++..+.++ T Consensus 52 ---p~~~~~~~-~~~---~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~-~~~~~--~~---~~~~~~~~~~~~ 118 (395) T protein:vir:10 52 ---HFKVLEGN-RIQ---KNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLI-VVSDS--KE---LLIADSFYREEY 118 (395) T ss_pred ---eeEeccCC-ccc---cchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEE-EEecC--CC---eEecCCccceeE Confidence 21111111 111 12233333 223455667777788887554 33322 22 345566555554 Q ss_pred eeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccc Q lcl|Aclame:pro 169 YNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDR 248 (533) Q Consensus 169 ~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeR 248 (533) +........+.+.. ......+++.++||+......+. .+|+|-|+.|.+..... +-.++-- +-.+ T Consensus 119 ~~~~~~~~~~~~~~-------~~~~~~~~~~evih~~~~~~~~~-~~G~spi~~~~~~~~~~------~~~~~~~-~~~~ 183 (395) T protein:vir:10 119 ALYDDIFKDVTVKD-------YTYQRTFTMQEVIYLKYNNNKVT-HFVESLFEDYGKIFGRM------IGAQLKN-YQIR 183 (395) T ss_pred eecCcceeEEEEcC-------ceeeeeeccccEEEEccCCCCcc-cccchHHHHHHHHHHHH------HHHHHhc-CCCc Confidence 43322111221111 12234578999999986554443 58988888766554322 1122221 1112 Q ss_pred eeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC----CC Q lcl|Aclame:pro 249 RVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS----KV 324 (533) Q Consensus 249 r~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~----nl 324 (533) -++.++ +.+...++.+-++..+.++.+-. ++..+.| +. + +.|.+++.|.-. ++ T Consensus 184 gii~~~-~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~v---------~~-l----------~~g~~~~~l~~~~~~~~~ 240 (395) T protein:vir:10 184 GILKSA-SSAYDEKNIEKLQAFTNKLFNTF--NKNQLAI---------AP-L----------IEGFDYEELSNGGKNSNM 240 (395) T ss_pred eEEEeC-CCCCCHHHHHHHHHHHHHHhccc--cccCcce---------EE-c----------CCCceeeeccccccccch Confidence 233333 33444555555555555533210 1111101 00 1 123444444211 22 Q ss_pred Ch---HHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCcccee-- Q lcl|Aclame:pro 325 DL---AEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFR-- 398 (533) Q Consensus 325 g~---i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~-- 398 (533) .+ ++=.+|-.+.+.++.+||.+.|+. ++ +.+.-....|.+ -|.-+..++++.|.+.|+. ++++. T Consensus 241 ~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~--~~---sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~-----~~~~~~~ 310 (395) T protein:vir:10 241 PFSELSELMRDAIKNVALMIGIPPGLIYG--ET---ADLEKNTLVFEKFCLTPLLKKIQNELNAKLIT-----QSMYLKD 310 (395) T ss_pred hHHHHHHHHHHHHHHHHHHhCCCHHHhcC--cc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----hhhhccc Confidence 22 222456678899999999999963 22 223333344555 4566666777878777754 33331 Q ss_pred EEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcC Q lcl|Aclame:pro 399 LVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLG 478 (533) Q Consensus 399 ~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~ 478 (533) +.|. +..+-... .++|.+++..+- +..-||..|.-.. ++-.++. .+..|+-..+..-.+ T Consensus 311 ~~f~----~~~l~~~D-~~~~~~~~~~~~----------~~G~lt~NE~R~~-----~g~~p~~-~g~~d~~~~~~n~~~ 369 (395) T protein:vir:10 311 TRIE----IVGVNKKD-PLQYAEAIDKLV----------SSGSFTRNEVRIM-----LGEEPSD-NPELDEYLITKNYEK 369 (395) T ss_pred ceec----chhhhccC-HHHHHHHHHHHH----------hCCCcCHHHHHHH-----hCCCCCC-CCCCceeeecccccc Confidence 2232 22332222 334555554421 2233554332111 1111111 111122111110000 Q ss_pred c-cCCcccccCCCcccccCCCCCccCCCc Q lcl|Aclame:pro 479 E-RGSPIESPRGRTEFDFGTEGGEELGGE 506 (533) Q Consensus 479 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (533) . .....+.+... -...|-+.++ -|+ T Consensus 370 ~~~~~~~~~~~~~-~~~kgg~~~~--~g~ 395 (395) T protein:vir:10 370 ANSGENDEKEKDE-NTLKGGDEDE--SGD 395 (395) T ss_pred ccccccccCcccc-cccCCCCCCC--CCC Confidence 0 00000001100 0111111111 133 No 125 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=98.40 E-value=8.5e-07 Score=53.86 Aligned_cols=376 Identities=10% Similarity=0.083 Sum_probs=153.4 Q ss_pred HHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCC Q lcl|Aclame:pro 17 TNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNE 96 (533) Q Consensus 17 ~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~ 96 (533) =.|.+.+|+- +... + . .+ ....+..+ +.+.+...|.|.+||+.|++.+-.. T Consensus 1 Mg~f~~lf~~----~~~~------~---~-~~----~~~~~~~v---------~~~~~~~~~~v~~~i~~Ia~~iA~~-- 51 (395) T protein:vir:10 1 MSILEKIFKT----RKDI------T---Y-ML----DLDMIEDL---------SQQAYVKRLAIDSCIEFVARAVAQS-- 51 (395) T ss_pred Cchhhhhhcc----Cccc------c---c-cc----cchhcccc---------chhhhhhhHHHHHHHHHHHHhhccc-- Confidence 1111222221 1100 0 0 00 00001111 1123345789999999999885432 Q ss_pred CCceeeeecccccccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEE Q lcl|Aclame:pro 97 NGNIVDVVTKDIELAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKR 168 (533) Q Consensus 97 ~~~~v~v~l~~~e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v 168 (533) |+.+--++ +.. ...+..+| .-....+..+..++.+|..|. .+.+. ++ +..+++..+.++ T Consensus 52 ---p~~~~~~~-~~~---~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~-~~~~~--~~---~~~~~~~~~~~~ 118 (395) T protein:vir:10 52 ---HFKVLEGN-RIQ---KNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLI-VVSDS--KE---LLIADSFYREEY 118 (395) T ss_pred ---eeEeccCC-ccc---cchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEE-EEecC--CC---eEecCCccceeE Confidence 21111111 111 12233333 223455667777788887554 33322 22 345566555554 Q ss_pred eeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccc Q lcl|Aclame:pro 169 YNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDR 248 (533) Q Consensus 169 ~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeR 248 (533) +........+.+.. ......+++.++||+......+. .+|+|-|+.|.+..... +-.++-- +-.+ T Consensus 119 ~~~~~~~~~~~~~~-------~~~~~~~~~~evih~~~~~~~~~-~~G~spi~~~~~~~~~~------~~~~~~~-~~~~ 183 (395) T protein:vir:10 119 ALYDDIFKDVTVKD-------YTYQRTFTMQEVIYLKYNNNKVT-HFVESLFEDYGKIFGRM------IGAQLKN-YQIR 183 (395) T ss_pred eecCcceeEEEEcC-------ceeeeeeccccEEEEccCCCCcc-cccchHHHHHHHHHHHH------HHHHHhc-CCCc Confidence 43322111221111 12234578999999986554443 58988888766554322 1122221 1112 Q ss_pred eeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC----CC Q lcl|Aclame:pro 249 RVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS----KV 324 (533) Q Consensus 249 r~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~----nl 324 (533) -++.++ +.+...++.+-++..+.++.+-. ++..+.| +. + +.|.+++.|.-. ++ T Consensus 184 gii~~~-~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~v---------~~-l----------~~g~~~~~l~~~~~~~~~ 240 (395) T protein:vir:10 184 GILKSA-SSAYDEKNIEKLQAFTNKLFNTF--NKNQLAI---------AP-L----------IEGFDYEELSNGGKNSNM 240 (395) T ss_pred eEEEeC-CCCCCHHHHHHHHHHHHHHhccc--cccCcce---------EE-c----------CCCceeeeccccccccch Confidence 233333 33444555555555555533210 1111101 00 1 123444444211 22 Q ss_pred Ch---HHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCcccee-- Q lcl|Aclame:pro 325 DL---AEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFR-- 398 (533) Q Consensus 325 g~---i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~-- 398 (533) .+ ++=.+|-.+.+.++.+||.+.|+. ++ +.+.-....|.+ -|.-+..++++.|.+.|+. ++++. T Consensus 241 ~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~--~~---sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~-----~~~~~~~ 310 (395) T protein:vir:10 241 PFSELSELMRDAIKNVALMIGIPPGLIYG--ET---ADLEKNTLVFEKFCLTPLLKKIQNELNAKLIT-----QSMYLKD 310 (395) T ss_pred hHHHHHHHHHHHHHHHHHHhCCCHHHhcC--cc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----hhhhccc Confidence 22 222456678899999999999963 22 223333344555 4566666777878777754 33331 Q ss_pred EEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcC Q lcl|Aclame:pro 399 LVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLG 478 (533) Q Consensus 399 ~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~ 478 (533) +.|. +..+-... .++|.+++..+- +..-||..|.-.. ++-.++. .+..|+-..+..-.+ T Consensus 311 ~~f~----~~~l~~~D-~~~~~~~~~~~~----------~~G~lt~NE~R~~-----~g~~p~~-~g~~d~~~~~~n~~~ 369 (395) T protein:vir:10 311 TRIE----IVGVNKKD-PLQYAEAIDKLV----------SSGSFTRNEVRIM-----LGEEPSD-NPELDEYLITKNYEK 369 (395) T ss_pred ceec----chhhhccC-HHHHHHHHHHHH----------hCCCcCHHHHHHH-----hCCCCCC-CCCCceeeecccccc Confidence 2232 22332222 334555554421 2233554332111 1111111 111122111110000 Q ss_pred c-cCCcccccCCCcccccCCCCCccCCCc Q lcl|Aclame:pro 479 E-RGSPIESPRGRTEFDFGTEGGEELGGE 506 (533) Q Consensus 479 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (533) . .....+.+... -...|-+.++ -|+ T Consensus 370 ~~~~~~~~~~~~~-~~~kgg~~~~--~g~ 395 (395) T protein:vir:10 370 ANSGENDEKEKDE-NTLKGGDEDE--SGD 395 (395) T ss_pred ccccccccCcccc-cccCCCCCCC--CCC Confidence 0 00000001100 0111111111 133 No 126 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=98.37 E-value=9.9e-07 Score=53.51 Aligned_cols=420 Identities=11% Similarity=0.041 Sum_probs=172.9 Q ss_pred ccCCCCCccccchhhc---------------------------ccccCcccc--c-hHHHHHHHHHHhhcChhHHHHHHH Q lcl|Aclame:pro 37 MIPINMYHPFATAGYA---------------------------SRFYGGIEF--N-RFFLYDMYDRMDYTDPLISTVLDI 86 (533) Q Consensus 37 ~i~~~~~~~~~~~~~~---------------------------~~~ygg~~~--n-~~~li~~YR~m~~~~PEV~~AId~ 86 (533) ++|++......++=.. ..||-|... . ....=+.+|.+.....-+.-+|+. T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~e~~~i~~L~~~~~~~~~r~~~l~~YY~G~~~i~~~~~~~p~~~~~~~~v~n~~~~iVd~ 80 (504) T protein:vir:99 1 MTEETTSASKFTFRIPELNDDVVDKVNGLYQQLVDRTPRNLLRASFYDGKYAIRQIGNLIPPEYLRTATVLGWSAKAVDT 80 (504) T ss_pred CCccCCcccccccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccchhccccccHHHHHHhhccCcHHHHHHH Confidence 4444322221111000 001111100 0 000001111111112223334444 Q ss_pred hhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceee Q lcl|Aclame:pro 87 IADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFS 166 (533) Q Consensus 87 Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik 166 (533) +++-+.+-+ +...+.+-.+.-...+...=+|+....+.++..+++||.|+-..-+....+..-++.++|+.+- T Consensus 81 ~a~rl~~~G-------f~~~d~~~~~~~l~~i~~~N~ld~~~~~~~~~a~iyG~af~~v~~~~d~~~~~~I~~~sP~~~~ 153 (504) T protein:vir:99 81 LARRCNLES-------FVWPDGDYGSIGGPDVWDENFFATKANNAMVSSLIHGPAFLINTEGGAGEPDSLIHVKSAMQAT 153 (504) T ss_pred HHhhhccce-------eeCCCCChhhHHHHHHHHhcChhhHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceeE Confidence 443222111 1121211122223344555578889999999999999999766544333344457889999988 Q ss_pred EEeeccCcE-----------------EEEEecccceec----ccC-----CcccccCcccEEEEecCcccCcccccchhH Q lcl|Aclame:pro 167 KRYNPETDT-----------------WYYVITDVYRNV----VSG-----YFNEDIPEEDVIHFSHKIDTNFFPYGRSYL 220 (533) Q Consensus 167 ~v~d~~g~~-----------------e~y~y~~~~~~~----~~~-----~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L 220 (533) .++|...+. ...+|.+...+. +.+ ...+... -.|++|.++.-.+ .++|.|-| T Consensus 154 ~iyD~~~~~~~~a~~~~~~d~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g-vPvV~~~n~~~~~-~~~G~sei 231 (504) T protein:vir:99 154 GEWNSRRNAMDSLLSITSRDAEGHPTGIALYEDGVTVTADMDDDGDWHADVRTHKLG-VPVEVLPYKPRED-RPLGSSRI 231 (504) T ss_pred EEEeCCCCceeEEEEEEEecCCCeEEEEEEEcCCcEEEEEEcCCceeeeccccCCCC-cceEEecccccCc-cccCcccc Confidence 888865542 112233221111 110 0001111 2377776543222 24666643 Q ss_pred H-HHHHHHHHH-HHHHHHHHHHHHhccccceeeecCCCCCchhhH--HHHHHHHHHHhhhceeeccCCCeeecccccchh Q lcl|Aclame:pro 221 E-SARAIWNQL-RLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKI--NEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSI 296 (533) Q Consensus 221 ~-~Aik~~NqL-rm~EdalVIyRi~RAPeRr~fyidvGnlp~~kA--eqy~~~im~~~knk~vyd~~tGei~d~~~~~n~ 296 (533) . ..+...+-+ +.+-+.++.-...=.|.|-++=.+-.......+ ..-.+..+. ++ T Consensus 232 ~~~v~~l~Da~~~~~~~~~~~~e~~a~p~r~i~G~~~~~~~~~d~~~~~~~~~~~~----~i------------------ 289 (504) T protein:vir:99 232 TRPVMSLQQRALKGCIRMDGHADVYSFPQLILLGADAKNFRNKDGSMKPAWQIALA----RV------------------ 289 (504) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhccCCccccccccccccchhhhhhh----hh------------------ Confidence 3 222222222 233344444444433433332211111000000 000011111 11 Q ss_pred hhHHhhhhccccc-----CCCcceeeecCCCCCChH-HHHHHHHHHHHHhcCCCeeeccCCCCccc--hhhhhHHHHHHH Q lcl|Aclame:pro 297 ESILKDYFIPRRG-----DRRAVEIDILQGSKVDLA-EDVEYMLNRLISALKVPKAFIGYEGDVNA--KNTLATQDIKFN 368 (533) Q Consensus 297 ~smleDywlprR~-----g~~gtEi~TLpG~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr--~~eI~rde~kF~ 368 (533) +.||.-+ ++..+++..+++++|.-. +-++-+-..+...-++|..-|+..+..|. +..|.-.+.... T Consensus 290 ------~~~~~~~~~~~~~~~~~~~~q~~~~~l~~~~~~l~~~i~~~a~~t~~P~~~lG~~~~~n~sSa~Ai~~~~~~L~ 363 (504) T protein:vir:99 290 ------FALPDDEDEPDAARARADVKQFPASSPQPHIEMLEQIAMMFSGETSIPVESLGFSNRANPTSADAYIASREDLI 363 (504) T ss_pred ------hcCCCccccccccCccceeeecCCCChHHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHH Confidence 1222211 233477888988877644 33666777777789999999875443333 335555677788 Q ss_pred HHHHHHHHHHHHHHhhh----hhhccCCC--ccce---eEEecCCcHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHH Q lcl|Aclame:pro 369 NTIKRIQGFFVEELERM----VRMNKEFA--DQDF---RLVMNRSNSIVEGERFAVIEQRIGIAERLKG-----WVREDW 434 (533) Q Consensus 369 kfI~rLr~~F~~~l~~q----Lilk~i~t--~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~p-----yvgk~~ 434 (533) +-+.+.|++|..-|++- +-+.+... +++| ++.|.....=+ +.++.+++..+.- .+.... T Consensus 364 ~ka~~k~~~f~~~l~~~~rla~~~~~~~~~~~~~~~~~~v~w~d~~~~s-------~a~~aDa~~Kl~~ag~~l~~~~~~ 436 (504) T protein:vir:99 364 AEAEGATDDWSPAFRRSMIRALAIKNGLDRIPPEWKTIDSKFRSPLYLS-------KAAQADAGAKMLGAGPEWLKETEV 436 (504) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceeEecCCCccC-------HHHHHHHHHHHHhhccccccchHH Confidence 88999999998766553 22333332 3444 46776444322 2334444444322 233456 Q ss_pred HHHHHhcCChhhhHH-HHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCccc Q lcl|Aclame:pro 435 IYSNILQIPYDLKPQ-EEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAF 513 (533) Q Consensus 435 i~k~il~~tde~~~q-~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (533) ++. +|.+|+++++. .+..+++...+... .+..-....+.+-..+ .+.+.+++. T Consensus 437 l~~-~lg~~~~ei~r~~~e~~~~~~~~~~~--------~l~~~~~~~~~~~~~~-----~~~~~e~a~------------ 490 (504) T protein:vir:99 437 GLE-LLGLTPQQAKRALAERRRASSVSIIE--------ALNRRQQEAATAGEDQ-----DQGAGEPPA------------ 490 (504) T ss_pred HHh-hcCCCHHHHHHHHHHHHHHhhHHHHH--------HHhcccCCCCCCCCCC-----CcCCCCCCC------------ Confidence 664 44788765543 22222221111100 0000000000000000 000011110 Q ss_pred CCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 514 EEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 514 ~~~~~~~g~~~~~~~~~~~~ 533 (533) ++.+..| +.|.-+ T Consensus 491 -~~~~~~~------~~p~~~ 503 (504) T protein:vir:99 491 -NEPPAAL------GRPTLV 503 (504) T ss_pred -CCCCccC------CCcccC Confidence 0000000 122222 No 127 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=98.33 E-value=1.2e-06 Score=52.96 Aligned_cols=432 Identities=10% Similarity=0.071 Sum_probs=176.8 Q ss_pred CCC-cchhhhhhh-HHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccc------cchHHHHHHHHH Q lcl|Aclame:pro 1 MPS-LEKYKKLNE-AVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIE------FNRFFLYDMYDR 72 (533) Q Consensus 1 ~~~-~~~w~k~de-~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~------~n~~~li~~YR~ 72 (533) |-+ ..-+...+. ...-+.|.+++.+- .|+. -....||-|.. .+...-.+..| T Consensus 1 ~~~~i~~~~~~~~~~~~~~~L~~~~~~~-~~r~------------------~~~~~YY~G~~~i~~~~~~~~~~~~~~~- 60 (485) T protein:vir:24 1 MTAPLPGQEEIADPAIARDEMVSAFEDQ-NQNL------------------RSNTSYYEAERRPEAIGVTVPVQMQSLL- 60 (485) T ss_pred CCCCCCCCCcccchHHHHHHHHHHHHHH-HHHH------------------HHHHHHHhccCchhhcCcccchhhhhhh- Confidence 111 111111111 10001111111000 0000 00011222111 00001112222 Q ss_pred HhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCC-- Q lcl|Aclame:pro 73 MDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGS-- 150 (533) Q Consensus 73 m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~-- 150 (533) ..+.-+.-+|+..+...++-+ +...+.+-.++....|.+.=+|+....+.++..+++|+.|+..-.+.. T Consensus 61 --~~~n~~~~ivd~~~~~l~~~g-------~~~~~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~ 131 (485) T protein:vir:24 61 --AHVGYPRLYVDSIAERQAVEG-------FRLGDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQI 131 (485) T ss_pred --hccchHHHHHHHHhhhhccCc-------eecCCCchhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCccc Confidence 223456667777665543211 222222222333344444457899999999999999999988765421 Q ss_pred ----CCCeeeeEEcCcceeeEEeeccCcE--EEE---------------Eeccccee-----cccC----CcccccCccc Q lcl|Aclame:pro 151 ----DGTIEKFQVVSPYIFSKRYNPETDT--WYY---------------VITDVYRN-----VVSG----YFNEDIPEED 200 (533) Q Consensus 151 ----k~gI~elr~ldP~~ik~v~d~~g~~--e~y---------------~y~~~~~~-----~~~~----~~~~~~~~~d 200 (533) ..|...++.++|+.+-+++|...++ .+| +|+....+ ++.. ...+.+..=- T Consensus 132 ~~~~~~~~~~i~~~~p~~~~~i~D~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vP 211 (485) T protein:vir:24 132 DLGWDPNVPLIRVEPPTRMYAEIDPRIGRPAKAIRVAYDAEGNEIQAATLYTPNETFGWFRAEGEWVEWFSDPHGLGAVP 211 (485) T ss_pred ccccCCCcceEEEeccceeEEEeeCCcCceeEEEEEEEeecCCeEEEEEEEcCCcEEEEEecCCceEeecccccCCCccc Confidence 2244468889999998888765431 111 12222111 1110 1112222234 Q ss_pred EEEEecCcccCcccccchhHHHHHHHH-HH-HHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhce Q lcl|Aclame:pro 201 VIHFSHKIDTNFFPYGRSYLESARAIW-NQ-LRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDY 278 (533) Q Consensus 201 vi~~~~~~~~d~~~~g~s~L~~Aik~~-Nq-Lrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~ 278 (533) +++|.++.-. .+++|.|-|.+.++.+ .- -+.+-+..++-...-.|.+-+.=.+....+... + +... T Consensus 212 vv~f~n~~~~-~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~-~----------~~~~ 279 (485) T protein:vir:24 212 VVPLPNRTRL-SDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDP-E----------TGQT 279 (485) T ss_pred EEEeccCccc-CCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhccCCcccccccc-c----------cccc Confidence 6667544322 2467888776644333 22 233444444445444443322211111100000 0 0000 Q ss_pred eeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChH-HHHHHHHHHHHHhcCCCeeeccCCCCccc- Q lcl|Aclame:pro 279 WVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLA-EDVEYMLNRLISALKVPKAFIGYEGDVNA- 356 (533) Q Consensus 279 vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr- 356 (533) +.+...| ..|+.--+ +.++..++...+... +-++-.-.++...-++|..-|+.... +. T Consensus 280 ~~~~~~~----------------~i~~~~~~---~~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~-n~~ 339 (485) T protein:vir:24 280 LFDAYLA----------------RILAFEDA---EGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLSTAAD-NPA 339 (485) T ss_pred hhhhccc----------------ceeccCCC---CceEEeecccchHHHHHHHHHHHHHHhcccCCCHHHhccccC-cch Confidence 1111111 12333212 234555655444322 22444444555556788777764322 22 Q ss_pred -hhhhhHHHHHHHHHHHHHHHHHHHHHhhhh-----hhccCCCccce---eEEecCCcHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 357 -KNTLATQDIKFNNTIKRIQGFFVEELERMV-----RMNKEFADQDF---RLVMNRSNSIVEGERFAVIEQRIGIAERLK 427 (533) Q Consensus 357 -~~eI~rde~kF~kfI~rLr~~F~~~l~~qL-----ilk~i~t~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~ 427 (533) +..+---+..+..-+.+.|+.|...|++-+ ++++.-.+.+| ++.|.....-.....++.. ..+++... T Consensus 340 Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~~~d~~~i~v~f~~~~~~s~~~~ad~~---~kl~~~g~ 416 (485) T protein:vir:24 340 SAEAIRAAESRLIKKVERKNAIFGGAWEEAMRLAYRLMKGGDVPPDMLRMETVWRDPSTPTYAAKADAA---TKLYGNGQ 416 (485) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeEEecCCCCCCHHHHHHHH---HHHHhccc Confidence 233444555566777888888887665442 22332223333 5777654432222222222 22334445 Q ss_pred hhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCcc Q lcl|Aclame:pro 428 GWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGEL 507 (533) Q Consensus 428 pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (533) +.+++.++++ .|.++++.+++-+++.+|........ .+ . .+.... ..+.++.++.....-+...||+ T Consensus 417 ~~~s~et~~~-~l~~~~d~~~e~~~~~ee~~~~~~~~--~~---~----~~~~~~--~~~~~~~~~e~~~~~~~~~~~~- 483 (485) T protein:vir:24 417 GVIPRERARK-DMGYSIAEREEMRRWDEEEAAMGLGL--LG---T----MVDADP--TVPGSPNPTPAPKPQPAIEGGD- 483 (485) T ss_pred ccCCHHHHHh-hCCCCHhHHHHHHHHHHHHhhhhhhH--HH---h----hcccCC--CCCCCCCCCCCCCCccCCCCCC- Confidence 7899999885 58888877665444444422110000 00 0 000000 0000010000000000111111 Q ss_pred CcCcc Q lcl|Aclame:pro 508 NLGGA 512 (533) Q Consensus 508 ~~~~~ 512 (533) +| T Consensus 484 ---~a 485 (485) T protein:vir:24 484 ---SA 485 (485) T ss_pred ---CC Confidence 11 No 128 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=98.28 E-value=1.7e-06 Score=52.21 Aligned_cols=427 Identities=11% Similarity=0.075 Sum_probs=175.1 Q ss_pred ccCccc--CCCCcccCCCCCccccchhhcccccCcccc--c-hHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCce Q lcl|Aclame:pro 26 MGAPHG--AGGSSMIPINMYHPFATAGYASRFYGGIEF--N-RFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNI 100 (533) Q Consensus 26 ~~~p~~--~~gas~i~~~~~~~~~~~~~~~~~ygg~~~--n-~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~ 100 (533) ++++.. ..=..... ..-+ ..--...||-|... + ....-+.++..-..+.-+.-+|+..++..++-++ T Consensus 1 ~~t~~d~i~~L~~~~~--~~~~--r~~~~~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~---- 72 (480) T protein:vir:78 1 MTTYHEHVERLQGLLA--RDLP--NLLEAEAYRNGTRRLKTIGIGAPPELAYLDVQPGWVATYLRTLSDRLDIEGF---- 72 (480) T ss_pred CCCHHHHHHHHHHHHH--HHHH--HHHHHHHHHhccccchhcccccchhhhhhhhhcchHHHHHHHHHhhhccCce---- Confidence 222110 00000000 0000 00001112222110 0 0000011111111123445555555544331111 Q ss_pred eeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeec----CCCCCeeeeEEcCcceeeEEeeccCc-- Q lcl|Aclame:pro 101 VDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEK----GSDGTIEKFQVVSPYIFSKRYNPETD-- 174 (533) Q Consensus 101 v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid----~~k~gI~elr~ldP~~ik~v~d~~g~-- 174 (533) .+. ++.+..+. ...|...=+|+.+..+.++..+++|+.|++.... ..++|...++.++|+.+.+++|...+ T Consensus 73 -~~~-~d~~~~~~-l~~i~~~N~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~~i~~~~p~~~~~i~D~~~~~~ 149 (480) T protein:vir:78 73 -RIS-EDSEGLEE-LWNWWQANDLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIPLIRVESPLYMYAELDPRNTRR 149 (480) T ss_pred -ecC-CCchhHHH-HHHHHHhcCHHHHHHHHHHHHhhcCceEEEeecCccccCCCCCeeEEEEEcccceEEEEcCCCccc Confidence 111 12122222 2334444478999999999999999999886532 12456667999999999999986532 Q ss_pred EEE-----------------EEeccccee----cccCC---------cccccCcccEEEEecCcccCcccccchhHHHHH Q lcl|Aclame:pro 175 TWY-----------------YVITDVYRN----VVSGY---------FNEDIPEEDVIHFSHKIDTNFFPYGRSYLESAR 224 (533) Q Consensus 175 ~e~-----------------y~y~~~~~~----~~~~~---------~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Ai 224 (533) ..+ -+|++...+ .+... ..+.+..=-+++|..+.-.+ .++|.|=|.+.+ T Consensus 150 ~~~~i~~~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~-~~~G~sdi~~~i 228 (480) T protein:vir:78 150 VTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLG-NRYGRSEISPEL 228 (480) T ss_pred eEEEEEEEEeecCCcceEEEEEEeCCeEEEEEecCCCcccccccccccccCCCCcceEEeecccccC-CccCccchhHHH Confidence 111 122221111 11110 01122223466676443222 257777665533 Q ss_pred HH-HHHH-HHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhh Q lcl|Aclame:pro 225 AI-WNQL-RLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKD 302 (533) Q Consensus 225 k~-~NqL-rm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleD 302 (533) ++ ..-+ +++-+.+++-....-|.+-+. ..+++..-.+ ..+.+ . ...+-.. T Consensus 229 ~~l~Da~~~~~s~~~~~~~~~a~p~~~i~---G~~~~~~~~~------------------~~~~~--~-----~~~~~~~ 280 (480) T protein:vir:78 229 RKVTDAASRTLMNLQSASQILGTPLRVIS---GVTTDELTND------------------GENTT--L-----DIYYGRI 280 (480) T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhh---CCCccccccc------------------cccch--h-----hhhhhhh Confidence 22 1111 223333344343334443322 1122110000 00000 0 0111112 Q ss_pred hhcccccCCCcceeeecCCCCCChH-HHHHHHHHHHHHhcCCCeeeccCCCCccchhh--hhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 303 YFIPRRGDRRAVEIDILQGSKVDLA-EDVEYMLNRLISALKVPKAFIGYEGDVNAKNT--LATQDIKFNNTIKRIQGFFV 379 (533) Q Consensus 303 ywlprR~g~~gtEi~TLpG~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~e--I~rde~kF~kfI~rLr~~F~ 379 (533) .|++ +...++-++++.++.-. +-++-+...++..-++|..-|+... -+.+|. |--.+.....-+.+.|+.|. T Consensus 281 ~~~~----~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~-~n~~Sg~Al~~~~~~l~~k~~~~~~~f~ 355 (480) T protein:vir:78 281 LTLA----SEAAKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYLSSSS-ENPASAEAIIATDSRIVKMAERKGRIFG 355 (480) T ss_pred ccCC----CCCceEEecCccCHHHHHHHHHHHHHHHhcccCCCHHHhcccc-CchhHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3443 33467778887666543 3366677777778888888887422 222233 33344445667777888887 Q ss_pred HHHhhhh----hhccCCCccce---eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHH Q lcl|Aclame:pro 380 EELERMV----RMNKEFADQDF---RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEV 452 (533) Q Consensus 380 ~~l~~qL----ilk~i~t~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~ 452 (533) .-|++-+ .+.|.--..+| ++.|.....-.....+..+ ..+++...+.+++.++.. +|.++++.++.-++ T Consensus 356 ~~l~~~~rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ad~~---~kl~~~g~~~~s~et~~~-~lg~~~d~~~e~~~ 431 (480) T protein:vir:78 356 GAWERAMRIAMQIMGREVTEEYTRLETVWRDPSTPTVAAKADAV---SKLYANGQGPIPKEQARI-DLGYTATQREQMRD 431 (480) T ss_pred HHHHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHH---HHHHHhcccCCCHHHHHh-cCCCCHhHHHHHHH Confidence 6655443 23342222333 5777644433333333333 234555577889888765 46788766544333 Q ss_pred HhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCc Q lcl|Aclame:pro 453 AEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGG 523 (533) Q Consensus 453 i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 523 (533) ++++..+... +....+ .....++..+|.++ +.+ + ..++.++..+..+ ++ T Consensus 432 ~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~~~~----------~~ 480 (480) T protein:vir:78 432 WDKQETEDMI-----DTLYST---TKAQADATPKPTVT-ETK--T-ETQTSPSGFNRTK----------TR 480 (480) T ss_pred HHHHHHHHHH-----HHhhcc---ccCCCccccCCCCC-CCC--C-ccCCCcccCCCcC----------CC Confidence 3222211000 000000 00111111111111 000 0 0111111111111 11 No 129 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=98.23 E-value=2.3e-06 Score=51.46 Aligned_cols=324 Identities=10% Similarity=0.045 Sum_probs=146.7 Q ss_pred ccCCCCCccc--cchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCceeeee-cc-----cc Q lcl|Aclame:pro 37 MIPINMYHPF--ATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNIVDVV-TK-----DI 108 (533) Q Consensus 37 ~i~~~~~~~~--~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~-l~-----~~ 108 (533) +.++..+... .++......+|++-.. .| . ..+|-+.++-+-|.+- +--.+|++.. |. ++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~--~-------~~~~~~~~~~~~~~~~--~~~epp~~~~~La~l~~~n~ 67 (348) T protein:vir:26 1 MTEQLIHSHTTDGTESKSVYSFDPNPEP--VD--T-------NSWMTRYCELFYNDFD--DYWEPPISLKGLAEIANANG 67 (348) T ss_pred CCccccchhhccccCCceEEEecCCCee--ec--C-------cchHHHHHHHHhcCCC--ccccCCCCHHHHHHHHhhhh Confidence 4433211111 1111111111212211 00 0 1122222222222110 0113344331 11 11 Q ss_pred cccHHHH---HHHHHHh--h--h-HHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCcEEEEEe Q lcl|Aclame:pro 109 ELAKAIL---SYLDYVI--N--I-EKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDTWYYVI 180 (533) Q Consensus 109 e~s~si~---~~i~~ll--~--f-~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~e~y~y 180 (533) -.+..|. +.+.... + + .....+.+..+++.|+.|+.++.+. .+.+.+|..|+|.+|++..+ ++ ||.+ T Consensus 68 ~h~~~i~~k~N~l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~~~rn~-~G~~~~L~~l~~~~v~~~~d--~~--~~~~ 142 (348) T protein:vir:26 68 YHGSLLKARANYVAGRFMNGGGLPMYKMNSACWDYFGLGMSAFVKIRSY-LKNVIALEPLPMVHMRKRKN--GD--FVQL 142 (348) T ss_pred hhhhhHhhhhhHHhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcC-CCcEEEEEEecCceeEeeec--Cc--EEEE Confidence 1111221 1111110 0 0 1234566778889999999998764 45688999999999977654 33 3333 Q ss_pred cccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHH--Hhccc--cceeeecCCC Q lcl|Aclame:pro 181 TDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYR--VVRSV--DRRVFYVDVG 256 (533) Q Consensus 181 ~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyR--i~RAP--eRr~fyidvG 256 (533) .. .+....+++++|+|+..-.+.+ +-||+|-+..|++.+..-. +.-.|| ..+-= -.-|+|+.-+ T Consensus 143 ~~-------~g~~~~f~~~dIiHir~~~~~~-~~~Gls~~~~a~~si~l~~----~a~~~~~~~f~NGa~pg~Il~~~~~ 210 (348) T protein:vir:26 143 LR-------NNEQKVFKAKDVIFIPQYDPQQ-QIYGLPDYLGSIQSSLLNR----DATLFRRRYYLNGAHMGFIFYATDP 210 (348) T ss_pred Ee-------cCeEEEEcCccEEEEcCCCCCC-CcccccHHHHHHHHHHHHH----HHHHHHHHHHhccCCCceEEEecCC Confidence 22 2344567899999997422222 3489998888887765332 333333 22222 2344444333 Q ss_pred CCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCC-CChHHHHH-HHH Q lcl|Aclame:pro 257 NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSK-VDLAEDVE-YML 334 (533) Q Consensus 257 nlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~n-lg~i~Dv~-Yf~ 334 (533) ++- .+..+-++.-++..+ --++ .|. +-+ +..-.+..|.+++-|.-.. =.|.-.++ +-. T Consensus 211 ~ls-~e~~~~lk~~~~~~~---G~~n-~~~----------~~v-----l~~~g~~~Gi~~~pis~~~~d~qf~e~k~~t~ 270 (348) T protein:vir:26 211 NLS-EADEKALKEKIASSK---GIGN-FRS----------MFV-----NIPNGKEKGIQLIPVGDIATKDEFERIKNITA 270 (348) T ss_pred CCC-HHHHHHHHHHHHHhc---Cccc-ccc----------eeE-----EcCCCCccceeEEEccCChhHHHHHHHHHhhH Confidence 443 333333433333311 1111 111 111 1111222466666542211 11333333 335 Q ss_pred HHHHHhcCCCeeeccCCC-CccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcHHHHHHH Q lcl|Aclame:pro 335 NRLISALKVPKAFIGYEG-DVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGER 412 (533) Q Consensus 335 ~kLy~aL~VP~srl~~~~-~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke 412 (533) ..+.++.+||...++.-. +.+-.+.+.-...-|.+ -|.-++++|.+.|.+.|..... -.|+|+|..+ .|--+ T Consensus 271 ~dIa~af~VPp~llGi~~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~---~~~~fdl~~~---~e~~~ 344 (348) T protein:vir:26 271 QDIFVGHRFPAGMGGMLPQQGANVPDPLKVSQVYDFYEVIPVCKRFMDAVNNDPEIPDN---LKLKFNLNPG---VESAN 344 (348) T ss_pred HHHHHHhCCCHHHccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCc---cEEEEecCcc---cccch Confidence 569999999999987432 22222334444444554 5778888898888777643211 1345555422 12222 Q ss_pred HHHH Q lcl|Aclame:pro 413 FAVI 416 (533) Q Consensus 413 ~ei~ 416 (533) ..-+ T Consensus 345 ~~a~ 348 (348) T protein:vir:26 345 GSAV 348 (348) T ss_pred hhcC Confidence 2222 No 130 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=98.21 E-value=2.5e-06 Score=51.28 Aligned_cols=425 Identities=12% Similarity=0.087 Sum_probs=181.6 Q ss_pred hhhhhHHHHHHhhccccccc-----CcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHH Q lcl|Aclame:pro 8 KKLNEAVNFTNFLSPMYGMG-----APHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLIST 82 (533) Q Consensus 8 ~k~de~~~~~~~~~~~~s~~-----~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~ 82 (533) .- -+.+.-+.|-..+..-. ..+-.+|.+.++. . +.... .-.+..| + .+.-+.- T Consensus 1 ~~-t~~~~i~~L~~~~~~~~~r~~~l~~Yy~G~~~i~~---~-------------~~~~~--~~~~~~~-~--~~n~~~~ 58 (480) T protein:vir:78 1 MT-TYHEHVERLQGLLARDLPNLLEAEAYRNGTRRLKT---I-------------GIGAP--PELAYLD-V--QPGWVAT 58 (480) T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc---c-------------ccccc--hhHhhhh-h--hcchHHH Confidence 11 11111111111110000 0011222222210 0 00000 0011112 2 2345667 Q ss_pred HHHHhhceeeecCCCCceeeeec-ccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeec----CCCCCeeee Q lcl|Aclame:pro 83 VLDIIADECTIPNENGNIVDVVT-KDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEK----GSDGTIEKF 157 (533) Q Consensus 83 AId~Ivneaiv~d~~~~~v~v~l-~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid----~~k~gI~el 157 (533) +|+..++...+-++ .. ++.+..+. ...|...=+|+.+..+.++..+++|+.|++.-.. +-..|...+ T Consensus 59 ivd~~~~~l~~~g~-------~~~~d~~~~~~-l~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~~i 130 (480) T protein:vir:78 59 YLRTLSDRLDIEGF-------RISEDSEGLEE-LWNWWQANDLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIPLI 130 (480) T ss_pred HHHHHHhhhccCce-------ecCCCchhHHH-HHHHHHhcCHHHHHHHHHHHHhhcCceEEEEecCccccCCCCCeeEE Confidence 77777765432221 11 12222222 2234444478999999999999999999887542 224677789 Q ss_pred EEcCcceeeEEeeccCc--E-----------------EEEEeccccee----cccCC---------cccccCcccEEEEe Q lcl|Aclame:pro 158 QVVSPYIFSKRYNPETD--T-----------------WYYVITDVYRN----VVSGY---------FNEDIPEEDVIHFS 205 (533) Q Consensus 158 r~ldP~~ik~v~d~~g~--~-----------------e~y~y~~~~~~----~~~~~---------~~~~~~~~dvi~~~ 205 (533) ..++|..+.+++|.... . ...+|++.... .+... ..+.+..=-+++|. T Consensus 131 ~~~~p~~~~~~~D~~~~~~~~~~i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~ 210 (480) T protein:vir:78 131 RVESPLYMYAELDPRNTRRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLT 210 (480) T ss_pred EEEcccceEEEEcCCCccceEEEEEEEEeecCCCceEEEEEEeCCeEEEEEecCCCccccccccccccCCCCCcceEEee Confidence 99999999999986422 1 11122222111 11110 01222223466666 Q ss_pred cCcccCcccccchhHHHHHHH-HHHH-HHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccC Q lcl|Aclame:pro 206 HKIDTNFFPYGRSYLESARAI-WNQL-RLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNN 283 (533) Q Consensus 206 ~~~~~d~~~~g~s~L~~Aik~-~NqL-rm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~ 283 (533) .+-..+ .++|.|-|.+.+++ ..-+ +++-+..++-...-.|.+-+. ..++...- +.. T Consensus 211 n~~~~~-~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~---G~~~~~~~------------------~~~ 268 (480) T protein:vir:78 211 NDPRLG-NRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVIS---GVTTDELT------------------NDG 268 (480) T ss_pred cccccC-CccCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhh---cCCccccc------------------ccc Confidence 432222 25777766653322 2211 223333344443333443322 11211000 000 Q ss_pred CCeeecccccchhhhHHh-hhhcccccCCCcceeeecCCCCCCh-HHHHHHHHHHHHHhcCCCeeeccCCCCccchh--h Q lcl|Aclame:pro 284 QNQFLGIDNYFSIESILK-DYFIPRRGDRRAVEIDILQGSKVDL-AEDVEYMLNRLISALKVPKAFIGYEGDVNAKN--T 359 (533) Q Consensus 284 tGei~d~~~~~n~~smle-DywlprR~g~~gtEi~TLpG~nlg~-i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~--e 359 (533) .+.+ +..+.. ..|+ .+..+++-++++.++.. ++-++-+...++..-++|..-|+... -+.++ . T Consensus 269 ~~~~--------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~-~n~~Sg~A 335 (480) T protein:vir:78 269 ENTT--------LDIYYGRILTL----ASEAAKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYLSSSS-ENPASAEA 335 (480) T ss_pred ccch--------hhhhhhhhccC----CCCCceEEecCccCHHHHHHHHHHHHHHHhcccCCChHHhcccc-CcchHHHH Confidence 0000 000111 1222 23346777788766653 34477777788888889988887432 22222 3 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhh----hccCCCccce---eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhH Q lcl|Aclame:pro 360 LATQDIKFNNTIKRIQGFFVEELERMVR----MNKEFADQDF---RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRE 432 (533) Q Consensus 360 I~rde~kF~kfI~rLr~~F~~~l~~qLi----lk~i~t~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk 432 (533) |--.+.....-+++.|+.|..-|++.+. +.|.-...+| ++.|.....-...+.++.+ ..+++...+.+++ T Consensus 336 lk~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~g~~~~~~~~~i~v~f~~~~~~s~~~~ad~~---~kl~~~g~~~~s~ 412 (480) T protein:vir:78 336 IIATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGREVTEEYTRLETVWRDPSTPTVAAKADAV---SKLYANGQGPIPK 412 (480) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHH---HHHHHhccccCCH Confidence 3334444666778888888876655432 3443223343 4677543322222333333 2345555678899 Q ss_pred HHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcc Q lcl|Aclame:pro 433 DWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGA 512 (533) Q Consensus 433 ~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (533) .++... |.+++++++.-+++++|..+... +....+ ....+++...|..+ +..++....++|- |+ T Consensus 413 et~~~~-lg~~~d~~~~~~~~~~e~~~~~~-----~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~ 476 (480) T protein:vir:78 413 EQARID-LGYTATQREQMRDWDKQETEDMI-----DTLYST---TKAQADATPKPTVT---ETKTETQTSPSGF----NR 476 (480) T ss_pred HHHHhc-CCCCHhHHHHHHHHHHHHHHHHH-----HHhhcc---ccccCCCCCCCCCC---CCCCccccccCCC----Cc Confidence 988876 57787655543333222110000 000000 00111111122111 1111122222221 11 Q ss_pred cCCc Q lcl|Aclame:pro 513 FEEF 516 (533) Q Consensus 513 ~~~~ 516 (533) .+.- T Consensus 477 ~~~~ 480 (480) T protein:vir:78 477 TKTR 480 (480) T ss_pred ccCC Confidence 1111 No 131 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=98.15 E-value=3.5e-06 Score=50.48 Aligned_cols=401 Identities=9% Similarity=0.081 Sum_probs=180.1 Q ss_pred hcccccccCccc-CCCC------cccCCCCCcc-ccchhhcccccCccccchHHHHHHHHHHhhcC-------------- Q lcl|Aclame:pro 20 LSPMYGMGAPHG-AGGS------SMIPINMYHP-FATAGYASRFYGGIEFNRFFLYDMYDRMDYTD-------------- 77 (533) Q Consensus 20 ~~~~~s~~~p~~-~~ga------s~i~~~~~~~-~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~-------------- 77 (533) |+=+.++ +.. -.|. ..+..-+.++ .+. .......|+++++|+.-. T Consensus 1 m~~~~~~--k~~~~~~~~~~~~~~~~~~~~~~~~i~~-----------~~~~~~ri~~~~~~y~g~~~~~~~~~~~~~~~ 67 (508) T protein:vir:15 1 MGLIQRI--KDLFWKGAAATGVTGSLSKITDDPRISI-----------DPDEYVRIQTDLDYYSDKLQYIHYQASDGIKK 67 (508) T ss_pred CChHHHH--HHHHHHHHHHhccccchHHhhccccccc-----------CHHHHHHHHHHHHHhcCCCcccccccCCCCcc Confidence 2222222 111 0000 0000000000 000 001223344445554321 Q ss_pred -------hhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCC Q lcl|Aclame:pro 78 -------PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGS 150 (533) Q Consensus 78 -------PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~ 150 (533) +-...++++.++-++ + .++++..++-+..++-.+.+++--+|...+.+.+...++.|..+|+..+|+ T Consensus 68 ~~~~~sln~~~~i~~~~A~lv~----~-e~~~i~v~~~~~~~e~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~- 141 (508) T protein:vir:15 68 KRLKNTINMAKTAARRIASVVF----N-EKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG- 141 (508) T ss_pred ccceeecchHHHHHHHHHhhhh----C-CCceEEeCCchHHHHHHHHHHHhccHHHHHHHHHHHHhhcCceEEEEEEeC- Confidence 122333333333322 1 133444332222233233333333589999999999999999999999974 Q ss_pred CCCeeeeEEcCcceeeEEeeccCcE-----------------EEEE------ec---ccce----ecccC----Ccccc- Q lcl|Aclame:pro 151 DGTIEKFQVVSPYIFSKRYNPETDT-----------------WYYV------IT---DVYR----NVVSG----YFNED- 195 (533) Q Consensus 151 k~gI~elr~ldP~~ik~v~d~~g~~-----------------e~y~------y~---~~~~----~~~~~----~~~~~- 195 (533) ++| .+.+++|.++-+.+-..++. .+|. +. .+.. +.+.. +.... T Consensus 142 -~~~-~i~~v~ad~~~P~~~d~~~~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l 219 (508) T protein:vir:15 142 -NHI-KIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPL 219 (508) T ss_pred -Cee-EEEEEcCCeeEEEEEcCCCeEEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhcCcccch Confidence 345 58899999876653223321 1221 10 0110 11100 01110 Q ss_pred --------cCc---------ccEEEEec---CcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCC Q lcl|Aclame:pro 196 --------IPE---------EDVIHFSH---KIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDV 255 (533) Q Consensus 196 --------~~~---------~dvi~~~~---~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidv 255 (533) +.+ --+++|.. +..+...|+|+|-+++|+....-|-..-+. +.|..|.-.+|++..+. T Consensus 220 ~~~~e~~~l~~~~~~~g~~~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~--~~~e~~~~~~~i~v~~~ 297 (508) T protein:vir:15 220 STLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQ--FIWEIRLGQKHIAVQPG 297 (508) T ss_pred hhcccccCCCcceEecCCCcceeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHH--HHHHHHhcccceeechH Confidence 111 12333322 222333578999999988777777655554 34666777777776332 Q ss_pred CCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC-CCC-hHHHHHHH Q lcl|Aclame:pro 256 GNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVD-LAEDVEYM 333 (533) Q Consensus 256 Gnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg-~i~Dv~Yf 333 (533) = +. +|..++..-+.... -+..|- . +...|..|+++.-. -.+ -.+-+..+ T Consensus 298 ~-l~--------------------~d~~~~~~~~~~~~-~~~~~~----~---~~~~~~~i~~~~~~ir~e~~~~~~~~~ 348 (508) T protein:vir:15 298 M-LR--------------------FDDEHKPTFDTEQN-VYVGVL----S---DDNNGLGVKDMTTPIRTVQYKDAIDHF 348 (508) T ss_pred H-hc--------------------CCCCCccccCCCCe-eEEecc----C---CCCCCCceeEeecccChHHHHHHHHHH Confidence 1 00 12222211110000 011110 0 11122234444321 112 23448888 Q ss_pred HHHHHHhcCCCeeeccCCCCc-cchhhhhHHHHHHHHHHHHHHHHHHHHHhh----hhh-------hccCC-------Cc Q lcl|Aclame:pro 334 LNRLISALKVPKAFIGYEGDV-NAKNTLATQDIKFNNTIKRIQGFFVEELER----MVR-------MNKEF-------AD 394 (533) Q Consensus 334 ~~kLy~aL~VP~srl~~~~~~-gr~~eI~rde~kF~kfI~rLr~~F~~~l~~----qLi-------lk~i~-------t~ 394 (533) .+.+..+.|++.+-|+.+.+. .-+++|.-.+.+-..-+.+.|+.|...|+. -|- .++.. .. T Consensus 349 l~~~~~~~gls~~~f~~~~~~~~TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~ 428 (508) T protein:vir:15 349 IKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSAS 428 (508) T ss_pred HHHHHHHhCCCchhcccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc Confidence 899999999999999866543 335677655555555555555555443332 221 11111 12 Q ss_pred cceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHhcCChhhhH-HHHHHhhhcccCCCCCcccccccc Q lcl|Aclame:pro 395 QDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRED-WIYSNILQIPYDLKP-QEEVAEAAGGGGLFDTGGFGEETT 472 (533) Q Consensus 395 eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~-~i~k~il~~tde~~~-q~~~i~~E~~~~~~~~~~~~~~~~ 472 (533) ++.++.+..+....+-+++++-..+.. ++ -.-+++. |||+ ...+|||+.+ +-+.|++|.....+..+..+.. T Consensus 429 ~~~~v~v~f~D~i~~d~~~~~~~~~~~-v~--aGi~s~e~~i~~-~~g~~deea~~el~ri~~E~~~~~~~~~~~~~~-- 502 (508) T protein:vir:15 429 QPLDIECHFDDGVFVNKDKQLEEDAKV-LA--IGALSKQTFLQR-NYGMTDEQAAEELAKIQSEAPTDTFEGGRSAIL-- 502 (508) T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHHH-Hh--cCCCCHHHHHHh-cCCCChHHHHHHHHHHHHhccccCccccccccC-- Confidence 333454544444444444443332222 21 1346665 5555 5779987754 4566888865433322211100 Q ss_pred hhhhcCc Q lcl|Aclame:pro 473 PADFLGE 479 (533) Q Consensus 473 ~~~~~~~ 479 (533) +-.+|+ T Consensus 503 -~g~~ge 508 (508) T protein:vir:15 503 -NGGDGE 508 (508) T ss_pred -CCCCCC Confidence 001122 No 132 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=98.14 E-value=3.8e-06 Score=50.32 Aligned_cols=323 Identities=12% Similarity=0.069 Sum_probs=155.1 Q ss_pred cchhhhhhhHHHHHHhh--cccccccCcccCCCCcccCCC--CCccccchhh-cccccCccccchHHHHHHHHHHhhcCh Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFL--SPMYGMGAPHGAGGSSMIPIN--MYHPFATAGY-ASRFYGGIEFNRFFLYDMYDRMDYTDP 78 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~--~~~~s~~~p~~~~gas~i~~~--~~~~~~~~~~-~~~~ygg~~~n~~~li~~YR~m~~~~P 78 (533) +++=++. .-.+.-. ...|+|+-|. +|=.+ ..+.....+. .+.+|..-+ +...|-+-+|. .| T Consensus 1 m~~~~~~---~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~~~~~~pP~-~~~~La~l~~~----~~ 66 (337) T protein:vir:78 1 MTKRQQQ---PAQAAASSPRPSVVFSMPE------AIDPTAWMTDYTGVFYNPYGEYYQPPI-DRKGLAKVARA----NA 66 (337) T ss_pred CCCcccC---cccccccCceeEEEecCcc------cccCcchhHhhhhhhhccCcceecCCC-CHHHHHHHhhc----ch Confidence 2211111 0011111 1223332211 11000 0011111111 122222212 44445555553 23 Q ss_pred hHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeE Q lcl|Aclame:pro 79 LISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQ 158 (533) Q Consensus 79 EV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr 158 (533) .-.++|..-.|-... .+.- + ..-.+..+-.+++.|+.|+.++.|. .+.+.+|. T Consensus 67 ~h~~~L~~k~N~~~~-~f~~------------~-------------~~~~~~~~~d~ll~GNay~~~~rn~-~G~~~~L~ 119 (337) T protein:vir:78 67 HHGAILMARRNMVAG-RFTN------------Q-------------RATITAFVHNYLQFGDGGLLKLRNS-FGQVVGLH 119 (337) T ss_pred hhhhHHHhhhccccc-cCcC------------c-------------HHHHHHHHHHHHhhCCeEEEEEECC-CCcEEEEE Confidence 335555554442111 0000 0 0123345567889999999988864 56699999 Q ss_pred EcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 VVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALM 238 (533) Q Consensus 159 ~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalV 238 (533) .|+|.+|++..| ++ .+|++. ++....+++++|+|+-.-.+.+ +-||+|-+..|++.+..-...++... T Consensus 120 pl~~~~v~~~~d--~~-~~~~~~--------~~~~~~~~~~eIiHik~~~~~~-~~~Gls~~~~a~~si~l~~aa~~~~~ 187 (337) T protein:vir:78 120 PLSSVYLRRRED--GC-FVYLQQ--------GKPNLIYRPDDVIWLAQYDPEQ-QVYGMPDYLGGLQSALLNQDATLFRR 187 (337) T ss_pred EeCCceeEeeeC--Ce-EEEEEc--------CCceEEECCccEEEECCCCCCC-CcccccHHHHHHHHHHHHHHHHHHHH Confidence 999999976643 33 344332 2344567889999987432222 34899988888877765444444222 Q ss_pred HHHHhc--cccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccC-CCcce Q lcl|Aclame:pro 239 LYRVVR--SVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGD-RRAVE 315 (533) Q Consensus 239 IyRi~R--APeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g-~~gtE 315 (533) |..+ |--.-|+|..-+++.+. +.+-+++-+..++- -.+.|. + ++.--.| ..|.+ T Consensus 188 --~~f~NGa~p~~il~~~~~~l~~e-~~~~lk~~~~~~~G----~~n~~~----------~------~v~~~~g~~~Gi~ 244 (337) T protein:vir:78 188 --RYFLNGAHMGFIFYATDPNMDDD-TEEEMKEMIANSKG----VGNFRS----------M------FVNIPDGKPDGIK 244 (337) T ss_pred --HHHhccCCCceeEEcCCCCCCHH-HHHHHHHHHHHhcC----cccccc----------e------EEEcCCCCcccee Confidence 2222 33344555544466544 34444444444321 001111 1 1111112 23455 Q ss_pred eeecCCC-CCChHHH-HHHHHHHHHHhcCCCeeeccCCCCccch--hhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhcc Q lcl|Aclame:pro 316 IDILQGS-KVDLAED-VEYMLNRLISALKVPKAFIGYEGDVNAK--NTLATQDIKFNN-TIKRIQGFFVEELERMVRMNK 390 (533) Q Consensus 316 i~TLpG~-nlg~i~D-v~Yf~~kLy~aL~VP~srl~~~~~~gr~--~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~ 390 (533) +.-|.-. .=.|.-. -++-.+.+.++.+||...++.-.+..++ +.+.-..+-|.+ -|.-++.+|.+.|...|+ T Consensus 245 ~~pis~~~~d~qfle~k~~s~~eIa~a~~VPp~llGi~~~~~~~~~~n~e~~~~~f~~~~L~P~~~~ie~~~n~~ll--- 321 (337) T protein:vir:78 245 LIPVGDIATKDEFAAIKGITAQDVLTAHRYPPALAGIIPTNGGGGLGDPEKYDATYARNEVLPLCELVQDAINSAGL--- 321 (337) T ss_pred EEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcccccCCCcCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--- Confidence 5544211 1112222 3355667999999999999854432221 234444455554 677888889888876554 Q ss_pred CCCccce-eEEecCCcHH Q lcl|Aclame:pro 391 EFADQDF-RLVMNRSNSI 407 (533) Q Consensus 391 i~t~eew-~~~f~~dn~f 407 (533) ...+| +|+|+...-. T Consensus 322 --~~~~~~~f~~~~~~~~ 337 (337) T protein:vir:78 322 --PRALWVTFRETIGAAV 337 (337) T ss_pred --ChhhceeccccccccC Confidence 23344 4655554443 No 133 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=98.11 E-value=4.3e-06 Score=49.99 Aligned_cols=329 Identities=12% Similarity=0.068 Sum_probs=146.7 Q ss_pred cchhhhhh-hHHHHHHh----hcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcCh Q lcl|Aclame:pro 4 LEKYKKLN-EAVNFTNF----LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDP 78 (533) Q Consensus 4 ~~~w~k~d-e~~~~~~~----~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~P 78 (533) |.+=++.- -...++.. ....|+|.-|.-.-..+.+ .+. .....++.+|..-+ +...|.+-+|.-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~----~~~-~~~~~~~~~~~pp~-~~~~la~~~~a~~---- 70 (344) T protein:vir:20 1 MSKKKGKTPQPAAKTMTASGPKMEAFTFGEPVPVLDRRDI----LDY-VECISNGRWYEPPV-SFTGLAKSLRAAV---- 70 (344) T ss_pred CCcccCCCCcchhhhhhccCCceEEEEcCCceEecCcchh----hhh-hhhhhcCceecCCC-CHHHHHHHHhhhh---- Confidence 11111100 00001111 1122333222210000000 011 11122233333222 3445555555322 Q ss_pred hHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeE Q lcl|Aclame:pro 79 LISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQ 158 (533) Q Consensus 79 EV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr 158 (533) ...+||.--+|-.. +.+ .-+..++.. .| ...+..+++.|+.|+.++.+. .+.+.+|. T Consensus 71 ~h~~~i~~k~n~l~-~~~--------~Pn~~lt~~---------~f----~~~~~d~ll~Gnay~~i~rn~-~G~~~~L~ 127 (344) T protein:vir:20 71 HHSSPIYVKRNILA-STF--------IPHPWLSQQ---------DF----SRFVLDFLVFGNAFLEKRYST-TGKVIRLE 127 (344) T ss_pred hhCccceehhhhHH-Hhc--------cCCCCCCHH---------HH----HHHHHHHHhcCCeEEEEEECC-CCcEEEEE Confidence 12233322222100 000 011112221 13 345667889999999988754 45699999 Q ss_pred EcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 VVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALM 238 (533) Q Consensus 159 ~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalV 238 (533) .|+|.+|++..+..+ ||.+.. ++....+++.+|+|+..-.+.+ +-||+|-+..|+..+..-...+.-. T Consensus 128 pl~~~~vr~~~~~~~---~~~~~~-------~~~~~~~~~~eIiHir~~~~~~-~~yGls~~~~a~~si~l~~~a~~~~- 195 (344) T protein:vir:20 128 TSPAKYTRRGVEEDV---YWWVPS-------FNEPTAFAPGSVFHLLEPDINQ-ELYGLPEYLSALNSAWLNESATLFR- 195 (344) T ss_pred EcCCceeEeeecCCE---EEEEcc-------CCeEEEEcCccEEEeCCCCCCC-CcccccHHHHHHHHHHHHHHHHHHH- Confidence 999999987665442 443332 2445678889999997433322 3499998888777766433333211 Q ss_pred HHHHh--ccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccC-CCcce Q lcl|Aclame:pro 239 LYRVV--RSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGD-RRAVE 315 (533) Q Consensus 239 IyRi~--RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g-~~gtE 315 (533) .|.. =|-..-|+|+.-+++-+..++ .+..+++.. +-...|. +| +|.--.| ..|++ T Consensus 196 -~~~f~NGa~p~~Il~~~d~~l~~e~~~----~ik~~~~~~--~g~~n~r-----------~l----~l~~p~g~~~gi~ 253 (344) T protein:vir:20 196 -RKYYENGAHAGYIMYVTDAVQDRNDIE----MLRENMVKS--KGRNNFK-----------NL----FLYAPQGKADGIK 253 (344) T ss_pred -HHHHhccCCCceEEEecCcCCCHHHHH----HHHHHHHHh--cCCCCcc-----------ce----EEecCCCCcccee Confidence 1122 122355666644455444333 333333321 1111111 11 1111111 23666 Q ss_pred eeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCC-ccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccC Q lcl|Aclame:pro 316 IDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGD-VNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKE 391 (533) Q Consensus 316 i~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~-~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i 391 (533) +.-|.-. ...=++--++-++.+.++.+||...++.-++ .+..+.+.-...-|.+ -|.-|+++|.++.. -| T Consensus 254 ~~pis~~~~d~qf~e~k~~s~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~P~~~~~e~in~-~l----- 327 (344) T protein:vir:20 254 IIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIREING-WL----- 327 (344) T ss_pred EEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHH-hc----- Confidence 6644211 1111222456778899999999999985332 2222334444444544 56667777765321 11 Q ss_pred CCccceeEEec---CCcH Q lcl|Aclame:pro 392 FADQDFRLVMN---RSNS 406 (533) Q Consensus 392 ~t~eew~~~f~---~dn~ 406 (533) -.+.|+|.+. .|+- T Consensus 328 -g~~~i~F~~~~l~~~d~ 344 (344) T protein:vir:20 328 -GQEVIRFKNYSLDTDND 344 (344) T ss_pred -CCcccccCccccccCCC Confidence 1234443322 2222 No 134 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=98.10 E-value=4.5e-06 Score=49.87 Aligned_cols=332 Identities=11% Similarity=0.102 Sum_probs=162.8 Q ss_pred cchhhhhhhHHHHHHhhcc--cccccCcccCCCCcccCCCCCccccchh-hcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSP--MYGMGAPHGAGGSSMIPINMYHPFATAG-YASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~--~~s~~~p~~~~gas~i~~~~~~~~~~~~-~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) +|+-++.+...-.+.=-.+ .|||.-|.. ....+...... -++.+|..-+ +...|-+-+|.- |.- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~y~~~~~~~~~~~~epp~-~~~~la~~~~~~----~~h 67 (345) T protein:vir:37 1 MKTNVKTDNKKGIVIAPINDRTFSLSEITA--------SPALDYVGIGFDENYNCYLPPV-NRHALAKLPHQN----AQH 67 (345) T ss_pred CCccccccchhhhcCCCceEEEeecCCccc--------chhhcccceeeecCCccccCCC-CHHHHHHHhhcc----hhh Confidence 7777777655433332223 344433321 11112111111 1222333222 555677777743 223 Q ss_pred HHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEc Q lcl|Aclame:pro 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVV 160 (533) Q Consensus 81 ~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~l 160 (533) .+||.--+|... ..+ .-+..++... | ...+..+++.|+.|+.++.+. .+.+.+|..| T Consensus 68 ~~~i~~k~n~l~-~~~--------~Pn~~~t~~~---------f----~~~v~d~ll~Gnay~~i~rn~-~G~~~~L~pl 124 (345) T protein:vir:37 68 GGILHSRANMVS-ATY--------EGGKALSKME---------M----RALCLNLIQFGDVGLLKVRNG-FGQVVRLVPL 124 (345) T ss_pred cchhhhhhhHHh-hcc--------CCCCCCCHHH---------H----HHHHHHHHhcCCeEEEEEECC-CCCEEEEEEe Confidence 455543333221 111 0122223221 2 335667889999999999875 4668899999 Q ss_pred CcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEec-CcccCcccccchhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 SPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSH-KIDTNFFPYGRSYLESARAIWNQLRLMEDALML 239 (533) Q Consensus 161 dP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~-~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVI 239 (533) +|.+|++..+.. ..+++.... . ..++....+++.+|+|+.. +..+ +-||+|-+..|+..+.. -.+.-. T Consensus 125 ~~~~vr~~~d~~--~~~~~~~~~--~-~~~g~~~~~~~~eViHir~~~~~~--~~~Gl~~~~~a~~si~l----~~~a~~ 193 (345) T protein:vir:37 125 SSLYLRVHKDGG--YSYLMKKSL--Y-DTAQEIYRYDAKDIIFIKLYDPMQ--QVYGSPDYVGGIQSALL----NSDATV 193 (345) T ss_pred cCceeEEeecCC--eeEEEeeee--e-ccCceEEEEccccEEEEcCCCCCC--CcccchHHHHHHHHHHH----HHHHHH Confidence 999997655433 322221111 1 1224445678999999973 2222 23899877666665432 223334 Q ss_pred HHHh----ccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccC-CCcc Q lcl|Aclame:pro 240 YRVV----RSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGD-RRAV 314 (533) Q Consensus 240 yRi~----RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g-~~gt 314 (533) ||.. -|-..-|+|+.-+++-+...+. ++.-+.+.+ .| .+ +-+| ++.--+| ..|+ T Consensus 194 ~~~~~f~NGa~~~~Il~~t~~~l~~e~~~~-lk~~~~~~~--------g~-----~n---~~~~----~i~~~~g~~~G~ 252 (345) T protein:vir:37 194 FRRRYFSNGAHMGFILYSTDPDLTEEMEEE-IARKISESK--------GV-----GN---FRSM----FVNIAGGHPDGL 252 (345) T ss_pred HHHHHHhccCCcceEEEeCCCCCCHHHHHH-HHHHHHHhc--------Cc-----cc---cCce----eEecCCCCccce Confidence 4321 2333556666545665444333 333333322 11 01 1111 1221222 2466 Q ss_pred eeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCC-CccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhcc Q lcl|Aclame:pro 315 EIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEG-DVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNK 390 (533) Q Consensus 315 Ei~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~-~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~ 390 (533) ++.-|.-. ...=++--++-++.+.++.+||...++.-+ +.+-.+.+.-....|.+. |.-++.+|.+.|..-+-.. T Consensus 253 ~~~pl~~~~~d~qf~e~k~~~~~dI~~a~~VPp~liGi~~~~t~~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~~e~~- 331 (345) T protein:vir:37 253 KVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEVMPLQEIIAETINQDPEIK- 331 (345) T ss_pred eEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC- Confidence 66655221 111111134556679999999999987532 233334455555566664 7888889988876422111 Q ss_pred CCCccceeEEecCCcHHHHHHHHHHHH Q lcl|Aclame:pro 391 EFADQDFRLVMNRSNSIVEGERFAVIE 417 (533) Q Consensus 391 i~t~eew~~~f~~dn~f~E~ke~ei~~ 417 (533) ..-.+.|..+.. ++ T Consensus 332 ----~~~~i~F~~~~l---------~k 345 (345) T protein:vir:37 332 ----NLLKIKFREQNF---------AK 345 (345) T ss_pred ----CcceEEECchhh---------cC Confidence 122233433322 21 No 135 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=98.05 E-value=6e-06 Score=49.20 Aligned_cols=423 Identities=12% Similarity=0.078 Sum_probs=170.9 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCc------ccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAP------HGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMD 74 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p------~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~ 74 (533) |+++.+=...+..+... +.+++...-.| +-..|-+.|..... . ... . .+.-+++ T Consensus 31 ~~~~e~~~~~~~~~i~~-~i~~~~~~~~~r~~~l~~YY~g~~~i~~~~~-~-~~~-----------~-----~~~~~ki- 90 (512) T protein:vir:97 31 YDGTESDLLQNINEVSK-YIEHHMDYQRPRLKVLSDYYEGKTKNLVELT-R-RKE-----------E-----YMADNRV- 90 (512) T ss_pred cCchhhhhhhhHHHHHH-HHHHHHHhhHHHHHHHHHHhcccCccccccC-c-ccc-----------c-----ccCccee- Confidence 55544322222222111 11111111111 12333333321100 0 000 0 0000122 Q ss_pred hcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCe Q lcl|Aclame:pro 75 YTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTI 154 (533) Q Consensus 75 ~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI 154 (533) .++-+.-+|+..+...+ +.|+.+..++-+ .++....|.+--+|+.+..+.++..++.|+.|.+...|. +|- T Consensus 91 -~~n~~k~Ivd~~~~yl~-----g~p~~~~~~d~~-~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~de--d~~ 161 (512) T protein:vir:97 91 -AHDYASYISDFINGYFL-----GNPIQCQDDDKD-VLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQ--DDE 161 (512) T ss_pred -ecchHHHHHHHHhhhhc-----ccCceeccCChH-HHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEEEEeCC--CCc Confidence 24566777777775554 567777665532 222333444445799999999999999999999988763 455 Q ss_pred eeeEEcCcceeeEEeeccCc--EEE----E-----------------Eeccccee--cccCCcccc------------cC Q lcl|Aclame:pro 155 EKFQVVSPYIFSKRYNPETD--TWY----Y-----------------VITDVYRN--VVSGYFNED------------IP 197 (533) Q Consensus 155 ~elr~ldP~~ik~v~d~~g~--~e~----y-----------------~y~~~~~~--~~~~~~~~~------------~~ 197 (533) ..++.++|+.+-++++..+. ..+ | +|+....+ ...++.... +. T Consensus 162 ~~i~~~~p~~~~~iyd~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 241 (512) T protein:vir:97 162 TRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFE 241 (512) T ss_pred eEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCc Confidence 67999999999999986643 111 1 22222111 111111000 00 Q ss_pred cccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHH-HHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhh Q lcl|Aclame:pro 198 EEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDA-LMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKR 276 (533) Q Consensus 198 ~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Eda-lVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~kn 276 (533) .=.++.|.. ...|+|-++.++....-|-.+--. ...-+-.+.|-+ ++ .|.. .....+. ... + T Consensus 242 ~vPvv~~~n------n~~~~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l-v~---~G~~-~~~~~~~-~~~----~- 304 (512) T protein:vir:97 242 RMPITEFSN------NERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAML-LI---KGNL-NLDPVEV-RKQ----K- 304 (512) T ss_pred ccceEeecC------CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCcee-ee---ecCc-cCCchhh-hhh----h- Confidence 011222221 135667666655544433322111 111122222211 11 1110 0000000 000 0 Q ss_pred ceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC-CCC-hHHHHHHHHHHHHHhcCCCeeeccCCCCc Q lcl|Aclame:pro 277 DYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVD-LAEDVEYMLNRLISALKVPKAFIGYEGDV 354 (533) Q Consensus 277 k~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg-~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~ 354 (533) ..+-+. .....-++..+.-.+..|..+..|-.. +.. .-.-+.-+.+.+|.-.++|---.+.-+ T Consensus 305 ------~~~~~~-------~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~-- 369 (512) T protein:vir:97 305 ------EANVLF-------LEPTVYENRDTGIETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS-- 369 (512) T ss_pred ------hccccc-------ccccchhhcccccCCCCCcceEEEeecCCHHHHHHHHHHHHHHHHHHhCCcccCccccc-- Confidence 000000 000000011111112223333333221 322 223377788889999999975433211 Q ss_pred cchhhhhH--HHHHHHHHHHHHHHHHHHHHhhh--hhh-----ccCC-Cccce---eEEecCCcHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 355 NAKNTLAT--QDIKFNNTIKRIQGFFVEELERM--VRM-----NKEF-ADQDF---RLVMNRSNSIVEGERFAVIEQRIG 421 (533) Q Consensus 355 gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~q--Lil-----k~i~-t~eew---~~~f~~dn~f~E~ke~ei~~~R~~ 421 (533) |+.|..+. -......-+.+.++.|...|++- ||+ ++.+ .+.+| ++.|.+.---.+. +.++ T Consensus 370 gn~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~p~~~~-------e~~~ 442 (512) T protein:vir:97 370 GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLI-------EELK 442 (512) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeCCCCCcCHH-------HHHH Confidence 33333333 22223334555556677666543 221 2222 34455 5778653322222 2334 Q ss_pred HHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCc Q lcl|Aclame:pro 422 IAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGE 501 (533) Q Consensus 422 ~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (533) ++..+...++++++.+.+-..+| ..++-+.|++|.++..... ......++ .+....+ T Consensus 443 ~~~kl~giiS~et~~~~l~~v~d-~~~E~eri~~E~~~~~~~~-----------~~~~~~~~--~~~~~~~--------- 499 (512) T protein:vir:97 443 AYIDSGGKISQTTLMSLFSFFQD-PELEVKKIEEDEKESIKKA-----------QKGIYKDP--RDINDDE--------- 499 (512) T ss_pred HHHHHhccCchHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHH-----------hhcccCCC--CCCCCCC--------- Confidence 45555567899998877655544 3333455655543211100 00000010 0000000 Q ss_pred cCCCccCcCcccCCchhhcCCcccC Q lcl|Aclame:pro 502 ELGGELNLGGAFEEFEEETGGGEEE 526 (533) Q Consensus 502 ~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (533) .+.+++....+++ T Consensus 500 ------------~~~~~~~~~~~~~ 512 (512) T protein:vir:97 500 ------------QDDDTKDTVDKKE 512 (512) T ss_pred ------------CCCCccccccccC Confidence 0000011111111 No 136 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=98.04 E-value=6.2e-06 Score=49.12 Aligned_cols=366 Identities=12% Similarity=0.079 Sum_probs=158.3 Q ss_pred hcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCc Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGN 99 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~ 99 (533) |. +|+.-.++.. ..... .+. .++..+. -+.+.+.|-|.+||+.|++.+--. T Consensus 1 Mg-~f~~~f~~~~----~~~~~-~~~---------~~~~~~~---------~~~a~~~~~v~~~i~~ia~~ia~~----- 51 (385) T protein:vir:95 1 MG-LFDSVFKRHS----ELSWM-YDL---------EFLQDKS---------KKAYLKQIALNTVVEMVARTISQS----- 51 (385) T ss_pred Cc-hhhhhhccCc----ccccc-cch---------hhhhccc---------hhhhhhhHHHHHHHHHHHHHHccc----- Confidence 22 1111112211 11100 000 0000111 122335689999999999875432 Q ss_pred eeeeecccccccHHHHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeec Q lcl|Aclame:pro 100 IVDVVTKDIELAKAILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNP 171 (533) Q Consensus 100 ~v~v~l~~~e~s~si~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~ 171 (533) |+.+--++. .+...+.++|+ -....+.++..++..|+.|..+..+ ...+.....+.|..+...... T Consensus 52 p~~~~~~~~----~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~~~--~~~~~~~~~~~~~~~~~~~~~ 125 (385) T protein:vir:95 52 EFRVMKNNT----KEKGTLYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKNDE--GHFFVADDFEKEDELGLYSHR 125 (385) T ss_pred ceeeeecCc----cccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEEecC--CCeeecccccccccccccccc Confidence 222211211 11233344443 3557788899999999999765332 222333333333322222111 Q ss_pred cCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceee Q lcl|Aclame:pro 172 ETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVF 251 (533) Q Consensus 172 ~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~f 251 (533) . +.+. . ........+++.+|+|+......+ ..+|.|-++.|.+.+.. ++-.+...-+| |-++ T Consensus 126 ~----~~~~----~--~~~~~~~~~~~~eiih~~~~~~~~-~~~G~s~~~~~~~~i~~------~~~~~~~~~~~-~g~l 187 (385) T protein:vir:95 126 F----TNVL----V--NDFEFKRVFTMDDVIYLKYNNQKL-DAFSLGLFEDYGEIFGR------MIDLQMLNNQI-RGIL 187 (385) T ss_pred c----eeee----e--cccceeeeeccccEEEecCCCCCc-ccccchHHHHHHHHHHH------HHHHHHhcCCC-ceEE Confidence 1 1111 0 011223457789999998765544 25899988887765532 33334444343 5666 Q ss_pred ecCCC-CCchhhHHHHHHHHHHH-hhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecC---C--CCC Q lcl|Aclame:pro 252 YVDVG-NVPPDKINEYLTNIAMQ-YKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQ---G--SKV 324 (533) Q Consensus 252 yidvG-nlp~~kAeqy~~~im~~-~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLp---G--~nl 324 (533) .++.. .+.+.+++. +++.+++ |+ . ..++.|.+. +--+ |++++.|. - .+. T Consensus 188 ~~~~~~~~~~e~~~~-~~~~~~~~~~-g--~~~~~~~i~-----------------~l~~---g~~~~~l~~~~~~~~s~ 243 (385) T protein:vir:95 188 KVDATKFYNKEKQKE-LQAYIDTLFD-A--FQNNTIAVV-----------------PLTE---GLAYEEHSNRGAAQSAQ 243 (385) T ss_pred EeCCccCCCHHHHHH-HHHHHHHHhh-h--hhhcCCceE-----------------EcCC---CceeEeecccccccCCH Confidence 66643 344443333 3333322 21 0 001122221 1112 33333331 1 122 Q ss_pred Ch---HHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccceeEE Q lcl|Aclame:pro 325 DL---AEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFRLV 400 (533) Q Consensus 325 g~---i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~~~ 400 (533) .+ ++=.++..+.+.+++|||.+.|+. ++ +.+......|.. -|.-+-.++++.|...|+...... .+.+. T Consensus 244 ~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~--~~---sn~e~~~~~~~~~~l~P~~~~ie~~l~~~L~~~~~~~--~~~~~ 316 (385) T protein:vir:95 244 QFSELNELKKTVLTDVARMIGVPPSLVLG--EM---ADLEKTIESYLQFCINPLLRKIEAELNSKFFYQDEYL--NDDMH 316 (385) T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHhcC--CC---cCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhcc--cceEE Confidence 22 233566777899999999999952 22 223333344444 667777888888888887554322 23455 Q ss_pred ecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCcc Q lcl|Aclame:pro 401 MNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGER 480 (533) Q Consensus 401 f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~ 480 (533) |.-+.. ... -++.|.+.+..+- +..-||..|.-. .++-.++.. +.-|+=..+ .- T Consensus 317 fd~~~l----~~~-D~~~~~~~~~~~~----------~~g~lt~NE~R~-----~~g~~p~~~-~~gd~~~~~-----~n 370 (385) T protein:vir:95 317 IKVVGI----DKR-DPLKLSEAIDKLV----------ASGTFTRNQVRI-----MTGEEPADD-PELDKFIIT-----KN 370 (385) T ss_pred Eechhh----hcc-CHHHHHHHHHHHH----------hCCCcCHHHHHH-----HhCCCCCCC-CCCceeeec-----cc Confidence 543332 111 1234555544421 233456433211 112211111 111110001 01 Q ss_pred CCcccccCCCcccccCCCCCccCCCccCcCcc Q lcl|Aclame:pro 481 GSPIESPRGRTEFDFGTEGGEELGGELNLGGA 512 (533) Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (533) ..|++.. .|||-| +. T Consensus 371 ~~~~~~~---------------kgge~~--~e 385 (385) T protein:vir:95 371 LQSADAF---------------KGGESN--EE 385 (385) T ss_pred ceecccc---------------cCCCCC--CC Confidence 1111111 122100 00 No 137 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=98.03 E-value=6.7e-06 Score=48.95 Aligned_cols=330 Identities=12% Similarity=0.076 Sum_probs=148.8 Q ss_pred cchhhhhh-----hHHHHHHhhcccccccCcccCCCCcccCCC-CCccccchhhcccccCccccchHHHHHHHHHHhhcC Q lcl|Aclame:pro 4 LEKYKKLN-----EAVNFTNFLSPMYGMGAPHGAGGSSMIPIN-MYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTD 77 (533) Q Consensus 4 ~~~w~k~d-----e~~~~~~~~~~~~s~~~p~~~~gas~i~~~-~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~ 77 (533) |++=++.- .+.-.+.=...+|+|.-|. +|=.+ ....-......+.+|..-+ +...|-+-+|.- T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~------~v~~~~~~~~~~~~~~~~~~~~pp~-~~~~la~~~~a~---- 69 (344) T protein:vir:60 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPV------PVLDRRDILDYVECISNGRWYEPPI-SFTGLAKSLRAA---- 69 (344) T ss_pred CCcccCCCCCchHHhhcCCcCcEEEEEcCCce------eecCCcchhHHHHhhhcCccccCCC-CHHHHHHHHHhh---- Confidence 11111100 0000001111233443222 11000 0000011222333443333 444566666532 Q ss_pred hhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeee Q lcl|Aclame:pro 78 PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKF 157 (533) Q Consensus 78 PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~el 157 (533) |.-.+||---+|... +.+- -+..++.. .| ...+..+++.|+.|+.++.+. .+.+.+| T Consensus 70 ~~h~~~i~~k~n~l~-~~~~--------Pn~~~t~~---------~f----~~~~~d~ll~Gnay~~i~rn~-~G~~~~L 126 (344) T protein:vir:60 70 VHHSSPIYVKRNILA-STFI--------PHPWLSQQ---------DF----SRFVLDFLVFGNAFLEKRYST-TGKVIRL 126 (344) T ss_pred hhhccchhhhhhHHH-hhcc--------CCCCCCHH---------HH----HHHHHHHHhcCCeEEEEEECC-CCcEEEE Confidence 223344433332211 1110 11112222 13 345567889999999988864 3558899 Q ss_pred EEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 158 QVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDAL 237 (533) Q Consensus 158 r~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Edal 237 (533) ..|+|.+|++..+..+ ||.+.. ++....+++.+|+|+..-.+.+ +-||+|-+..|+..+..-...+... T Consensus 127 ~~l~~~~vr~~~~~~~---~~~v~~-------~~~~~~~~~~eIiHir~~~~~~-~~yGlsp~~~a~~si~l~~~a~~~~ 195 (344) T protein:vir:60 127 ETSPAKYTRRGVEEDV---YWWVPS-------FNEPTAFAPGSVFHLLEPDINQ-ELYGLPEYLSALNSAWLNESATLFR 195 (344) T ss_pred EEcCcceEEEeecCCe---EEEEcc-------CCeEEEEcCccEEEEcCCCCCC-CcccccHHHHHHHHHHHHHHHHHHH Confidence 9999999988766542 443322 2345567889999997433322 2499999888887766544433321 Q ss_pred HHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccC-CCccee Q lcl|Aclame:pro 238 MLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGD-RRAVEI 316 (533) Q Consensus 238 VIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g-~~gtEi 316 (533) .-|=--=|-..-|+|+.-.++-+..++. +...++.. +-...|. +| +|.--.| ..|+++ T Consensus 196 ~~~f~NG~~pg~il~~~~~~ls~e~~~~----ik~~~~~~--~g~~~~r-----------~~----~l~~p~g~~~g~~~ 254 (344) T protein:vir:60 196 RKYYENGAHAGYIMYVTDAVQDRNDIEM----LRENMVKS--KGRNNFK-----------NL----FLYAPQGKADGIKI 254 (344) T ss_pred HHHHhccCCCceEEEecCcCCCHHHHHH----HHHHHHHh--cCCCCCc-----------ce----EEecCCCCccceeE Confidence 1111111222345555434555443333 22333221 1111111 11 1111111 235666 Q ss_pred eecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCC-ccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCC Q lcl|Aclame:pro 317 DILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGD-VNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEF 392 (533) Q Consensus 317 ~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~-~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~ 392 (533) .-|.-. ...=++--++-.+.+.++.+||...|+.-++ .+..+.+.-..+-|.+ -|.=|+++|.++- .- + T Consensus 255 ~pis~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~L~Pl~~~~e~ln-~~------l 327 (344) T protein:vir:60 255 IPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIREIN-GW------L 327 (344) T ss_pred EEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHH-Hh------c Confidence 655211 1111222457788899999999999975332 2222334443444544 4555666665421 11 1 Q ss_pred Ccccee---EEecCCcH Q lcl|Aclame:pro 393 ADQDFR---LVMNRSNS 406 (533) Q Consensus 393 t~eew~---~~f~~dn~ 406 (533) -.+.|+ |..-.|+- T Consensus 328 g~~~i~F~~~~l~~~d~ 344 (344) T protein:vir:60 328 GQEVIRFKNYSLDTDNG 344 (344) T ss_pred CCcccccCccccCCCCC Confidence 234343 23333333 No 138 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=98.02 E-value=6.9e-06 Score=48.87 Aligned_cols=337 Identities=12% Similarity=0.104 Sum_probs=144.4 Q ss_pred cchhhhhhhHH---HHHHhhcccccccCcccCCCCcccCCC--CCccccchhhcccccCccccchHHHHHHHHHHhhcCh Q lcl|Aclame:pro 4 LEKYKKLNEAV---NFTNFLSPMYGMGAPHGAGGSSMIPIN--MYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDP 78 (533) Q Consensus 4 ~~~w~k~de~~---~~~~~~~~~~s~~~p~~~~gas~i~~~--~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~P 78 (533) |++-++..-.. ....-....|||.-|.- |-.+ ..+........+.+|..-. +...|-+-+|... .| T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~pp~-~~~~la~l~~~~~-~h- 71 (346) T protein:vir:10 1 MKKQLRKNLTQNDRLQPQAQTEIFSFGDPIP------VLDRADILNYLECSAMYEKWYNPPM-SFDGLAKSLRSST-HH- 71 (346) T ss_pred CCcccCCCCCcccccccccCeEEEecCCcce------ecCchhHHHHHHHhhcCCceEecCC-CHHHHHHHHHhhh-hc- Confidence 11111110000 00001112222221111 1000 0000000001111111111 3333444444221 12 Q ss_pred hHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeE Q lcl|Aclame:pro 79 LISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQ 158 (533) Q Consensus 79 EV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr 158 (533) .++|.-=.|... . -++.-+..++.. .....+..|++.|+.|+.++.+. .+.+.+|. T Consensus 72 --~~~i~~k~n~l~--~------l~~~Pn~~~t~~-------------~f~~~~~d~ll~Gnay~~i~r~~-~G~~~~L~ 127 (346) T protein:vir:10 72 --ESAIITKANILL--S------TCEVDSRYLSRR-------------DLSSFVKDYLVFGNAYFEVVRNR-LGQVQRIE 127 (346) T ss_pred --chhhhhhhhhHH--H------HHhCCCCCCCHH-------------HHHHHHHHHHhcCCeEEEEEEcC-CCcEEEEE Confidence 222211111000 0 000001111111 22345567899999999988764 45688999 Q ss_pred EcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 VVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALM 238 (533) Q Consensus 159 ~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalV 238 (533) .|+|.+|++..+..+ ..|+.+.. ++....+++.+|+|+....+.+ +-||+|-+..|+..+..-...++... T Consensus 128 pl~~~~v~~~~~~~~-~~~~~~~~-------~g~~~~~~~~dIih~r~~~~~~-~~~G~~~~~~a~~si~l~~~a~~~~~ 198 (346) T protein:vir:10 128 SPLAKYVRKGLEAGQ-FYYVPQRF-------DHQEHEFAKGSIYHLLEPDINQ-DIYGLPQYLSALQSAWLNESATLFRR 198 (346) T ss_pred EecCCceEEEEcCCe-EEEEEEcc-------CCeEEEEecccEEEecCCCCCC-CeeeccHHHHHHHHHHHHHHHHHHHH Confidence 999999987655433 22222221 2345668899999997443322 34999988888887776666665432 Q ss_pred HHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeee Q lcl|Aclame:pro 239 LYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDI 318 (533) Q Consensus 239 IyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~T 318 (533) -|=--=|--.-|+|+.-+++-+...+ -+++-+.+.+. -.+.|.+ +-+.--....|++++- T Consensus 199 ~~~~NG~~~~~il~~~d~~l~~e~~~-~i~~~~~~~~g----~~n~~~~---------------~vl~~~~~~~gi~~~p 258 (346) T protein:vir:10 199 KYFLNGAHAGFVFYMSDASQKQEDVE-NIRQQLKQSKG----VGNFKNL---------------FVHAPNGKKDGIQIIP 258 (346) T ss_pred HHHhccCCCceEEEeCCCCCCHHHHH-HHHHHHHHhcC----ccccCce---------------eEecCCCCccceeEEe Confidence 22111122344455544455444333 34443333321 1112221 1111111123666665 Q ss_pred cCCCCC-ChHHH-HHHHHHHHHHhcCCCeeeccCCCC-ccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCc Q lcl|Aclame:pro 319 LQGSKV-DLAED-VEYMLNRLISALKVPKAFIGYEGD-VNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFAD 394 (533) Q Consensus 319 LpG~nl-g~i~D-v~Yf~~kLy~aL~VP~srl~~~~~-~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~ 394 (533) |.-..- .++-. -++-.+.+.++.+||...++.-++ .+-.+.+.-....|.+. |.-|+++|.++.. -|. . T Consensus 259 is~~~~d~qf~e~k~~~~~~I~~af~VPp~llG~~~~~~~~~s~~e~~~~~f~~~~l~P~~~~iee~n~-~L~------~ 331 (346) T protein:vir:10 259 IADVSAKDEFFNIKNVSRDDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEVFFITEIEPLQERLKEFNQ-WLG------Q 331 (346) T ss_pred cCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh-hcc------c Confidence 521110 11111 345577799999999999975432 22223444445556664 7888888876433 221 1 Q ss_pred cceeEEecCCcHHHHHHHHH Q lcl|Aclame:pro 395 QDFRLVMNRSNSIVEGERFA 414 (533) Q Consensus 395 eew~~~f~~dn~f~E~ke~e 414 (533) +- +.|....- |+-.| T Consensus 332 e~--i~F~~~~l---l~~~~ 346 (346) T protein:vir:10 332 EV--IKFKPSKL---LQRTQ 346 (346) T ss_pred ce--eeechhhh---cccCC Confidence 11 11221000 00000 No 139 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=98.00 E-value=7.6e-06 Score=48.64 Aligned_cols=402 Identities=12% Similarity=0.014 Sum_probs=158.3 Q ss_pred hccc-ccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhc---------------------- Q lcl|Aclame:pro 20 LSPM-YGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYT---------------------- 76 (533) Q Consensus 20 ~~~~-~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~---------------------- 76 (533) |..+ .....|....-...+.+. .+....-+.. +. ...+++...+++.++.+.- T Consensus 1 ~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~i~~--~i-~~~~~~~~~~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~~ 76 (478) T protein:vir:10 1 MISINWPWDKPYHEQVVEQIKPK-YETQEEMILR--LV-REHKENIDNITMGERYYNHHPDILDAPPKRDVNGDYDETKP 76 (478) T ss_pred CccccCCCCchhHHHHHHHHhhc-cCCcHHHHHH--HH-HHHHHHHHHHHHHHHHhcCCCchhccccccccccccccccc Confidence 2221 211112111111111111 0000000000 00 0000111111111111110 Q ss_pred -----ChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCC Q lcl|Aclame:pro 77 -----DPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSD 151 (533) Q Consensus 77 -----~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k 151 (533) ++-...+|+..+...+ +.|+.+..++.+..+.+.+ +.. -+|+.+..+.++.+++.|+.|++...|. T Consensus 77 ~~ki~~n~~~~ivd~~~~~l~-----g~~~~~~~~~d~~~~~l~~-~~~-n~~~~~~~~~~~~~~~~G~~~~~~~~d~-- 147 (478) T protein:vir:10 77 DWRMYTNYHQNLVDQKVAYAV-----ANPVTFGVDNDKALKQIQH-TLN-HKWDDKLVDILTAASNKGIEWVQPYVDE-- 147 (478) T ss_pred cceeccchHHHHHHHHHhhhc-----cCCeeeecCChHHHHHHHH-HHh-cCHHHHHHHHHHHHHhcCeEEEEEEecC-- Confidence 1222222222222211 4566666555333222222 222 3688999999999999999999987763 Q ss_pred CCeeeeEEcCcceeeEEeecc--CcEEEEE-------------ecccc--eecccC---------------------Ccc Q lcl|Aclame:pro 152 GTIEKFQVVSPYIFSKRYNPE--TDTWYYV-------------ITDVY--RNVVSG---------------------YFN 193 (533) Q Consensus 152 ~gI~elr~ldP~~ik~v~d~~--g~~e~y~-------------y~~~~--~~~~~~---------------------~~~ 193 (533) +|-..++.++|+.+-++++.. ++..+++ |+... .+.... ... T Consensus 148 ~g~~~~~~~~p~~~~~i~d~~~~~~~~~~v~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (478) T protein:vir:10 148 EGEFKTFRVPAEQAVPIWTNKERDELQAFIRVYELDGAERVEYWTKDDVTYYELKEGQLIPDFYRSDDHIQPHYYQGNKL 227 (478) T ss_pred CCeeEEEEEcccceEEEEcCCCCCceEEEEEEEEecCceEEEEEeCCeEEEEEEcCCeeeccccccccccccceeccccc Confidence 466679999999999998743 2322211 22110 010000 000 Q ss_pred cccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHH-HHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHH Q lcl|Aclame:pro 194 EDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLM-EDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAM 272 (533) Q Consensus 194 ~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~-EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~ 272 (533) +.+..=.+++|.. .++|.|-++..+....-|-++ =+....-+-.+.|-+-+.-.+..+. .+.... T Consensus 228 ~~~~~vPvv~~~n------~~~g~sd~~~v~~liDa~~~~~S~~~~~~~~~~~p~~~~~g~~~~~~-----~~~~~~--- 293 (478) T protein:vir:10 228 MSWGRVPFIPFKN------NPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEGEDM-----KDFMHN--- 293 (478) T ss_pred ccCCccceEEecc------CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCcccc-----chhhhh--- Confidence 1111112333322 245667666544444333321 1222222334444322211111110 000000 Q ss_pred HhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC-CCCChH-HHHHHHHHHHHHhcCCCeeeccC Q lcl|Aclame:pro 273 QYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG-SKVDLA-EDVEYMLNRLISALKVPKAFIGY 350 (533) Q Consensus 273 ~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG-~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~ 350 (533) .+ .+. + ++++.-+|+ +++.|-. .+...+ .-++-+.+.+|+-.++|-.-.. T Consensus 294 -~~--------~~~------------~---~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~- 345 (478) T protein:vir:10 294 -LK--------YYK------------A---ISVAGESGS---GVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQD- 345 (478) T ss_pred -hh--------hcc------------e---EEecCCCCC---cceEEeecCChHHHHHHHHHHHHHHHHHhCccccCcc- Confidence 00 000 0 223322332 3333321 244323 4478888999999999953222 Q ss_pred CCCccchhhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--hhc--c-CCCccceeEEecCCcHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 351 EGDVNAKNTLAT--QDIKFNNTIKRIQGFFVEELERMV--RMN--K-EFADQDFRLVMNRSNSIVEGERFAVIEQRIGIA 423 (533) Q Consensus 351 ~~~~gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--ilk--~-i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~ 423 (533) ...|+.|..+. .......-+.+.++.|...|++-+ |++ | -....+.++.|...---.+.. .++++ T Consensus 346 -~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~g~~~~~~~i~i~f~~~~p~d~~e-------~a~~~ 417 (478) T protein:vir:10 346 -KFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLDVKVQDIEITFNFNVMVNELE-------NSQIA 417 (478) T ss_pred -ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccceEEecCCCCCCHHH-------HHHHH Confidence 11133333332 222222345555566776665532 332 2 222334567775443322333 34455 Q ss_pred HHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCcc Q lcl|Aclame:pro 424 ERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEE 502 (533) Q Consensus 424 ~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (533) +.+.+-+|+.++.+.+-..+| ..++-+.|++|..+.... +++. ..+..++. + .+... .+.+ T Consensus 418 ~kl~g~iS~et~~~~l~~v~D-~~~E~~ri~~E~~~~~~~-------~~~~-~~~~~~~~---~-----~~~~~-~~~~ 478 (478) T protein:vir:10 418 MNSTGLLSKETILSNHAWVED-PVAEMERIEQENIELNQQ-------LPDI-EEGLNGEQ---Q-----RQSEN-NQPE 478 (478) T ss_pred HHHhCCCChHHHHHhCCCCCC-HHHHHHHHHHHHHHHHhh-------cccc-ccccCCCC---C-----CCCCC-CCCC Confidence 556677999999986654444 333344455553311111 1110 00111100 0 00000 0000 No 140 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=97.99 E-value=7.9e-06 Score=48.55 Aligned_cols=405 Identities=12% Similarity=0.090 Sum_probs=181.8 Q ss_pred HHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhc------------------ Q lcl|Aclame:pro 15 NFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYT------------------ 76 (533) Q Consensus 15 ~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~------------------ 76 (533) .+++|++.+-++-.+-+.. .+|..-..++--+ + .......|+.+++++.- T Consensus 1 m~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~--~--------~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~ 68 (499) T protein:vir:80 1 MINQIIAGVKGVMRRMGLL--KSLKDVTDHKKVN--A--------NDEDYKYIDMWKRLYQGNYAEWHNLNYEHNGNPVN 68 (499) T ss_pred ChhHHHHHHHHHHHHhccc--cchhhhhcCCCCc--C--------CHHHHHHHHHHHHHhcCCcchhhccccccCCCccc Confidence 3333333322221111110 1111100011000 0 00111223333333321 Q ss_pred -----ChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh---hhHHHHHHHHHHHhhcCceeEEEeec Q lcl|Aclame:pro 77 -----DPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI---NIEKNAYPIIRNMIKYGDMFLHILEK 148 (533) Q Consensus 77 -----~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll---~f~~~~~e~~R~wyvDGr~~~~kiid 148 (533) .+-...++++.++.++ +.|+++..++. ..-+.+.+++ +|...+.+.+......|..|++..+| T Consensus 69 ~~~~s~n~~~~iv~~~a~~l~-----~ep~~i~~~d~----~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D 139 (499) T protein:vir:80 69 RRQLSMNLPKVTAKYMSKLLF-----NEKVKINIDDE----TAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHD 139 (499) T ss_pred cceeecchHHHHHHHHHHhhh-----CCcceEeeCCH----HHHHHHHHHHhhccHHHHHHHHHHHHhhcCcEEEEEEEC Confidence 1333445555555433 33666776652 2223334444 59999999999999999999999998 Q ss_pred CCCCCeeeeEEcCcceeeEEeeccCcE-------------------EEEEecc-----cce----ecc--cC--Cccc-- Q lcl|Aclame:pro 149 GSDGTIEKFQVVSPYIFSKRYNPETDT-------------------WYYVITD-----VYR----NVV--SG--YFNE-- 194 (533) Q Consensus 149 ~~k~gI~elr~ldP~~ik~v~d~~g~~-------------------e~y~y~~-----~~~----~~~--~~--~~~~-- 194 (533) .. +.| .+.+++|.++-+++...+.. |+..+.. +.. +.+ +. +... T Consensus 140 ~~-~~~-~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~y~~lE~h~~~~~~~~~y~I~n~~~~~~~~~~lG~~v~l 217 (499) T protein:vir:80 140 GN-KNV-KVSFATADCMYPLSNDSENVDECLIANSFHKNNKYYKLLEWNEWKGEKEEVYTVTTELYQSDDPNELGGKVSL 217 (499) T ss_pred CC-CcE-EEEEEcCCceEEEEecCCCeEEEEEEEEEeecCeEEEEEEEEEecccceeeEEEEEEEEeccCccccCcccch Confidence 53 445 58999999988765444542 1111100 000 000 00 0000 Q ss_pred -----ccCc---------ccEEEEecC---cccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCC Q lcl|Aclame:pro 195 -----DIPE---------EDVIHFSHK---IDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGN 257 (533) Q Consensus 195 -----~~~~---------~dvi~~~~~---~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGn 257 (533) .+++ --+++|... ..+...|+|+|-|++|......|-..-..++ |..+.=.+|+|. +..= T Consensus 218 ~~~~~~~~~~~~~~~~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~--~e~~~~~~~i~v-~~~~ 294 (499) T protein:vir:80 218 KLLFNDIEPVVPLPSLTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYY--QEFKLGKKKVLV-PSSF 294 (499) T ss_pred hhhccCcCCceeecCCCccceEeecCCccccccCCCccCCchHhhHHHHHHHHHHHHHHHH--HHHHhcccceec-chhh Confidence 1111 123444322 2233347899999998888877776666543 566665555554 2110 Q ss_pred CchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhc-ccccCCCcceeeecCCC-CCC-hHHHHHHHH Q lcl|Aclame:pro 258 VPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFI-PRRGDRRAVEIDILQGS-KVD-LAEDVEYML 334 (533) Q Consensus 258 lp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywl-prR~g~~gtEi~TLpG~-nlg-~i~Dv~Yf~ 334 (533) + + . ..|. +|+.... +..-...|-. +-..++.+-.|+++.+. .-. -.+-++.+. T Consensus 295 l---------~----~-----~~~~-~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l 350 (499) T protein:vir:80 295 V---------K----T-----AVNL-DGSTTQY-----FDSTDEAFFLYQGEQDDNGKAIKDISVEIRSTEFIESINAML 350 (499) T ss_pred h---------h----c-----cCCC-CCCcccC-----CCcccceeeEeeccCCCCcCceeEecCcCChHHHHHHHHHHH Confidence 0 0 0 0000 0100000 0000000100 00111222236666443 222 235588888 Q ss_pred HHHHHhcCCCeeeccCCCCcc-chhhhhHHHHHH----HHHHHHHHHHHHHHHhhhh-------hhcc-CCCccceeEEe Q lcl|Aclame:pro 335 NRLISALKVPKAFIGYEGDVN-AKNTLATQDIKF----NNTIKRIQGFFVEELERMV-------RMNK-EFADQDFRLVM 401 (533) Q Consensus 335 ~kLy~aL~VP~srl~~~~~~g-r~~eI~rde~kF----~kfI~rLr~~F~~~l~~qL-------ilk~-i~t~eew~~~f 401 (533) +.+..+.|+|.+-|+.+.+.. -+++|.-....- .+....+|..+.++++.-| .++| .....+..++| T Consensus 351 ~~i~~~~g~s~~~fg~~~~g~~TAtei~s~~~~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~~~~~~~~~~~v~v~f 430 (499) T protein:vir:80 351 RIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHSQLIEQGIKEMIVSILEVGKLIKAYDGDTVELDTITVDF 430 (499) T ss_pred HHHHHhcCCChhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccceEEEe Confidence 999999999999998665432 355664333332 2333444444444433322 2233 33445667778 Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhH-HHHHHhhhcccCCCCCcccccccchhhhcCcc Q lcl|Aclame:pro 402 NRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKP-QEEVAEAAGGGGLFDTGGFGEETTPADFLGER 480 (533) Q Consensus 402 ~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~-q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~ 480 (533) ...-.-.+..++ +...++.+ ..-+++..+..+....||++.+ .-+.|++|.....+ +++.+ T Consensus 431 ~d~i~~d~~~~~---~~~~~~~~--~Gi~S~et~l~~~~~~~d~ea~~el~~i~~E~~~~~~-~~d~~------------ 492 (499) T protein:vir:80 431 DDSIAQDEDTTI---NRYTTAKN--QGMIPLKIALQRAWNITEAEADEWAEMLAKEKQAEIP-NNDMT------------ 492 (499) T ss_pred CCCCCCCHHHHH---HHHHHHHH--cCCCCHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCC-CCCcc------------ Confidence 543332222222 22222222 2457776655556677876643 34566666543221 11100 Q ss_pred CCcccccCCCcccccCCCCCcc Q lcl|Aclame:pro 481 GSPIESPRGRTEFDFGTEGGEE 502 (533) Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~ 502 (533) |..|.++ T Consensus 493 ---------------g~~ge~e 499 (499) T protein:vir:80 493 ---------------GIFGEEE 499 (499) T ss_pred ---------------ccCCCCC Confidence 1111111 No 141 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=97.94 E-value=9.8e-06 Score=48.05 Aligned_cols=396 Identities=9% Similarity=0.004 Sum_probs=180.9 Q ss_pred hhhhhHHHHHHhhcccccccC-----cccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHH Q lcl|Aclame:pro 8 KKLNEAVNFTNFLSPMYGMGA-----PHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLIST 82 (533) Q Consensus 8 ~k~de~~~~~~~~~~~~s~~~-----p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~ 82 (533) -..|+...-..|........+ .+-.+|.+.++.. +. +...-++..+ + .+.-+.- T Consensus 1 ~~~~~~~~i~~l~~~~~~~~~r~~~l~~Yy~G~~~i~~~---~~---------------~~~~~~~~~k-~--~~n~~~~ 59 (441) T protein:vir:80 1 MNSDELALIEGMYDRIQRLSSWHCCIEGYYEGSNRVRDL---GV---------------AIPPELQRVQ-T--VVSWPGI 59 (441) T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhc---Cc---------------ccchhhhhhh-h--hcchHHH Confidence 344444433444443333211 1123443333210 00 0000011222 2 2345666 Q ss_pred HHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCc Q lcl|Aclame:pro 83 VLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSP 162 (533) Q Consensus 83 AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP 162 (533) +|+..++-...-+ +...+ ++-.+.+.+.-+|+....+.++..++.|+.|++...| ++|-..++.++| T Consensus 60 ivd~~~~~l~~~g-------~~~~d----~~~l~~i~~~n~~~~~~~~~~~~~~~~G~a~~~v~~d--~~g~~~i~~~~p 126 (441) T protein:vir:80 60 AVDALEERLDWLG-------WTNGD----GYGLDGVYAANRLATASCDVHLDALIFGLSFVAIIPH--GDGTVSVRPQSP 126 (441) T ss_pred HHHHHHhhhcccc-------ccCCC----hHHHHHHHHhcCHHHHHHHHHHHHhhcCeeEEEEEeC--CCCceEEEEEcc Confidence 7776665443222 11111 1112333344578999999999999999999987765 356667999999 Q ss_pred ceeeEEeeccCcE--E--------------EEEeccccee----cccC------CcccccCcccEEEEecCcccCccccc Q lcl|Aclame:pro 163 YIFSKRYNPETDT--W--------------YYVITDVYRN----VVSG------YFNEDIPEEDVIHFSHKIDTNFFPYG 216 (533) Q Consensus 163 ~~ik~v~d~~g~~--e--------------~y~y~~~~~~----~~~~------~~~~~~~~~dvi~~~~~~~~d~~~~g 216 (533) +++-+++|..++. . ..+|.+...+ .+.+ ...+.+..=.+++|...--.+ .++| T Consensus 127 ~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~-~~~G 205 (441) T protein:vir:80 127 KNCTGKFSADGSRLDAGLVVQQTCDPEVVEAELLLPDVIVQVERRGSREWVEVDRIPNVLGAVPLVPIVNRRRTS-RIDG 205 (441) T ss_pred ceEEEEEeCCCCceeEEEEEEEEecCceEEEEEEecCeEEEEEEcCCcceeeccccccCCCceeEEEeeccccCC-ccCC Confidence 9999999865541 1 1123222111 1111 111222223466665432222 3477 Q ss_pred chhHHHHHHH-HHH-HHHHHHHHHHHHHhccccceeeecCCC-CCchhhHHHHHHHHHHHhhhceeeccCCCeeeccccc Q lcl|Aclame:pro 217 RSYLESARAI-WNQ-LRLMEDALMLYRVVRSVDRRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNY 293 (533) Q Consensus 217 ~s~L~~Aik~-~Nq-Lrm~EdalVIyRi~RAPeRr~fyidvG-nlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~ 293 (533) .|-|...+++ ..- -+.+-+...+-+....|.+-+. | ++.... ....+ ...|.+ T Consensus 206 ~s~l~~~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~----G~~~~~~~-----~~~~~---------~~~~~i------ 261 (441) T protein:vir:80 206 RSEITRSIRAYTDEAVRTLLGQSVNRDFYAYPQRWVT----GVSADEFS-----QPGWV---------LSMASV------ 261 (441) T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhcCceeeee----cCCccccc-----cchhh---------hccccc------ Confidence 7766543332 211 2334455555566656554332 3 221110 00000 001111 Q ss_pred chhhhHHhhhhcccccCCCcceeeecCCCCCCh-HHHHHHHHHHHHHhcCCCeeeccCCCCcc-chhhhhHHHHHHHHHH Q lcl|Aclame:pro 294 FSIESILKDYFIPRRGDRRAVEIDILQGSKVDL-AEDVEYMLNRLISALKVPKAFIGYEGDVN-AKNTLATQDIKFNNTI 371 (533) Q Consensus 294 ~n~~smleDywlprR~g~~gtEi~TLpG~nlg~-i~Dv~Yf~~kLy~aL~VP~srl~~~~~~g-r~~eI~rde~kF~kfI 371 (533) +-+|.-+++.+.++..++++++.. ++-++=+-.+++...++|..-|+..+... -+..+---+.....-+ T Consensus 262 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~~~~Sg~Al~~~~~~l~~k~ 332 (441) T protein:vir:80 262 ---------WAVDKDDDGDTPNVGSFPVNSPTPYSDQMRLLAQLTAGEAAVPERYFGFITSNPPSGEALAAEESRLVKRA 332 (441) T ss_pred ---------ccCCCCCCCCcceeEecCccchHHHHHHHHHHHHHHhcccCCCHHHhccCCCcchHHHHHHHHHHHHHHHH Confidence 123433445556777787766543 23355556788888899988886433221 1222333344455567 Q ss_pred HHHHHHHHHHHhhhh--hhc--cC--CCccce---eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC Q lcl|Aclame:pro 372 KRIQGFFVEELERMV--RMN--KE--FADQDF---RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQI 442 (533) Q Consensus 372 ~rLr~~F~~~l~~qL--ilk--~i--~t~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~ 442 (533) .+.++.|...|++-+ +++ |. -...+| ++.|.....-.....++.+ ..+.+.-.+.+++..++. .+.. T Consensus 333 ~~~~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~e~ad~~---~kl~~~g~~~~s~~~~~~-~l~~ 408 (441) T protein:vir:80 333 ERRQTSFGQGWLSVGFLAAKALDSRVDEADFFGDVGLRWRDASTPTRAATADAV---TKLVGAGILPADSRTVLE-MLGL 408 (441) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeeeEEeCCCCCcCHHHHHHHH---HHHHhcCcccccHHHHHH-hCCC Confidence 777777887666532 222 21 112233 5677654432222222221 222233345677777764 5566 Q ss_pred ChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccc Q lcl|Aclame:pro 443 PYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIES 486 (533) Q Consensus 443 tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (533) +++++++-++.++|..+.. ...+.....+|-|. T Consensus 409 ~~~e~~~~~~e~~e~~~~~-----------~~~~~~~~~~~~~~ 441 (441) T protein:vir:80 409 DDVQVEAVMRHRAESSDPL-----------AVLAGAISRQTNEV 441 (441) T ss_pred CHHHHHHHHHHHHHHHHHH-----------HHHhhhhhcccccC Confidence 7665554222222211000 01111111222111 No 142 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=97.94 E-value=1e-05 Score=47.97 Aligned_cols=393 Identities=12% Similarity=0.082 Sum_probs=173.2 Q ss_pred CCccccc---hhhcccccC----------ccc--cchHHHHHHHHHHhhc-ChhH----------------------HHH Q lcl|Aclame:pro 42 MYHPFAT---AGYASRFYG----------GIE--FNRFFLYDMYDRMDYT-DPLI----------------------STV 83 (533) Q Consensus 42 ~~~~~~~---~~~~~~~yg----------g~~--~n~~~li~~YR~m~~~-~PEV----------------------~~A 83 (533) |.+..-+ ..+...|+- +.. .+....|+++++++.- |+.+ ..+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~n~~k~i 80 (496) T protein:vir:38 1 MINQIIAGVKGVMRRMGLLKALKDVKDHKKVNANDEDYKYIDMWKRLYQGHYAEWHNLNYEHNGNPVNRRQLSMNLPKVT 80 (496) T ss_pred ChhHHHHHHHHHHHHhccchhhHHHHhcCCCcCCHHHHHHHHHHHHHhcCCCchhhcchhccCCCccccceeecchHHHH Confidence 2222111 112222221 111 1233445555554432 2221 112 Q ss_pred HHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcc Q lcl|Aclame:pro 84 LDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPY 163 (533) Q Consensus 84 Id~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~ 163 (533) ++..++.++ +.|+++.+++. -.++..+.+++--+|..++.+.+....+.|..|++..+|.. ++| .+.+++|. T Consensus 81 ~~~~a~~l~-----~~p~~i~~~d~-~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~-~~~-~i~~v~~~ 152 (496) T protein:vir:38 81 AKYMSKLLF-----NEKVKINIDDK-AAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGN-KNV-KVSFATAD 152 (496) T ss_pred HHHHhhhhh-----CCcceEeeCCh-HHHHHHHHHHhccCHHHHHHHHHHHHhhhCcEEEEEEEcCC-CcE-EEEEEccc Confidence 222222211 33556666542 12222222333346999999999999999999999999742 444 69999999 Q ss_pred eeeEEeeccCcEE-------------EE------Eecc--cce----eccc-C---Cccc-------ccCc--------- Q lcl|Aclame:pro 164 IFSKRYNPETDTW-------------YY------VITD--VYR----NVVS-G---YFNE-------DIPE--------- 198 (533) Q Consensus 164 ~ik~v~d~~g~~e-------------~y------~y~~--~~~----~~~~-~---~~~~-------~~~~--------- 198 (533) ++-+++...+... +| .... +.. +.+. + +... .+.+ T Consensus 153 ~~~P~~~~~~~~~~~~f~~~~~~~~~~y~~le~h~~~~~~~~I~~~~y~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 232 (496) T protein:vir:38 153 CMYPLSNDSENVDECVIANSFHKNNKYYTLLEWNEWQGDVYTVTTELYQSDDPNELGTKVSLTLLFDDIEPVVPLPDFTR 232 (496) T ss_pred ceEEEEecCCcEEEEEEEEEEEeCCeEEEEEEEEEEeCceEEEEEEEEecCCccccCccccccccccccccceeecCCCc Confidence 9987666555421 11 0000 000 1000 0 0000 0111 Q ss_pred ccEEEEec---CcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhh Q lcl|Aclame:pro 199 EDVIHFSH---KIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYK 275 (533) Q Consensus 199 ~dvi~~~~---~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~k 275 (533) --+++|.. +......++|+|-|+.++.....|-..-..+ .+-++.-.+++|. +.. ++.. T Consensus 233 ~~f~~~~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~--~~~~~~~~~~i~v-~~~---------~l~~------ 294 (496) T protein:vir:38 233 PTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSY--YQEFKLGKKKVLV-PSS---------FVKT------ 294 (496) T ss_pred ceEEEecCCcccccccCCcCCCchHhhHHHHHHHHHHHHHHH--HHHHhhcccceec-chH---------Hhhc------ Confidence 11233322 2223334789999999877666664443332 2455554455543 210 1100 Q ss_pred hceeeccCCCeeecccccchhhhHHhhhhcccc-cCCCcceeeecCCC-CCCh-HHHHHHHHHHHHHhcCCCeeeccCCC Q lcl|Aclame:pro 276 RDYWVRNNQNQFLGIDNYFSIESILKDYFIPRR-GDRRAVEIDILQGS-KVDL-AEDVEYMLNRLISALKVPKAFIGYEG 352 (533) Q Consensus 276 nk~vyd~~tGei~d~~~~~n~~smleDywlprR-~g~~gtEi~TLpG~-nlg~-i~Dv~Yf~~kLy~aL~VP~srl~~~~ 352 (533) ..|..++... -++.-.+.|..-.- .++.+..|+++.+. ...+ ..-++.+.+.+....|+|.+-|+.+. T Consensus 295 ---~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~~~ 365 (496) T protein:vir:38 295 ---AVNLDGSTTQ------YFDSTDEAFFLYQGDQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDE 365 (496) T ss_pred ---cCCCCCcccc------CCCCccceEEEeecCCCcccccceeeccccCHHHHHHHHHHHHHHHHHhhCCChhhcCCCc Confidence 0011111100 00111111111000 11122234444332 1121 23477888999999999999998765 Q ss_pred Ccc-chhhhhHHHHHHHHHHHHHHHHHH----HHHh-------hhhhhcc-CCCccceeEEecCCcHHHHHHHHHHHHHH Q lcl|Aclame:pro 353 DVN-AKNTLATQDIKFNNTIKRIQGFFV----EELE-------RMVRMNK-EFADQDFRLVMNRSNSIVEGERFAVIEQR 419 (533) Q Consensus 353 ~~g-r~~eI~rde~kF~kfI~rLr~~F~----~~l~-------~qLilk~-i~t~eew~~~f~~dn~f~E~ke~ei~~~R 419 (533) +.. -+++|.-....-..-+.+.++.|. ++++ ....++| .+...+..++|...-.-.+.. .+... T Consensus 366 ~g~~tAtei~~~~~~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~~~g~~~~~~~i~v~f~d~i~~d~~~---~~~~~ 442 (496) T protein:vir:38 366 NGLKTATEVVSEKSETYQTKNSHSQLIEQGIKEMIVSILEVGKFIEAYSGEVVELDTITVDFDDSIAQDEDT---TINRY 442 (496) T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEeCCCCCCCHHH---HHHHH Confidence 432 255553333332223333333332 3222 2233444 334445667776432211222 22222 Q ss_pred HHHHHHhhhhhhHHHHHHHHhcCChhhhH-HHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcc Q lcl|Aclame:pro 420 IGIAERLKGWVREDWIYSNILQIPYDLKP-QEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTE 492 (533) Q Consensus 420 ~~~~~~~~pyvgk~~i~k~il~~tde~~~-q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (533) .++.+ .+-+|+..+.++....||++.+ +-+.|++|.....+ +++. ..+.+.+| T Consensus 443 ~~~~~--~GiiS~et~l~~~~~~~d~ea~~el~ri~~E~~~~~~-~~d~-----------------~~~~~~~e 496 (496) T protein:vir:38 443 TNAKN--QGMIPLKIALQRAWNITEAEADEWAEMLAKEKQAEMP-NNDM-----------------NGIFGEEE 496 (496) T ss_pred HHHHh--cCCCCHHHHHHhcCCCChHHHHHHHHHHHHhhhccCc-cccc-----------------cCCCCCCC Confidence 22222 2567887666667778886654 34667766543322 1110 11111111 No 143 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=97.89 E-value=4.3e-07 Score=55.50 Aligned_cols=195 Identities=10% Similarity=0.100 Sum_probs=98.8 Q ss_pred eeecCC-CC---CchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCC Q lcl|Aclame:pro 250 VFYVDV-GN---VPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVD 325 (533) Q Consensus 250 ~fyidv-Gn---lp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg 325 (533) ||.++- .+ .....+.+-+.-+ ..+| ...+.+..+.. -|+| ++-.. +|+ T Consensus 1 V~k~~~l~~~~~~~~~~~~~r~~~~-~~~~------~~~~~~~ld~~-------~e~~-----------e~~~~---~ls 52 (201) T protein:vir:10 1 MWKAKGLADLCDDSDGAARLRLAQV-DNNS------GVGQAIGIDAD-------SEEY-----------NVLNS---DIG 52 (201) T ss_pred CccchHHHHHhcCChHHHHHHHHHH-HHhh------hhhhhheeecC-------Ccce-----------eeeec---CcC Confidence 222211 00 0001111111111 1111 11111111111 0111 22222 344 Q ss_pred hHHH-HHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHH-HHHHHhhhhhhccCCCccceeEEecC Q lcl|Aclame:pro 326 LAED-VEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGF-FVEELERMVRMNKEFADQDFRLVMNR 403 (533) Q Consensus 326 ~i~D-v~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~-F~~~l~~qLilk~i~t~eew~~~f~~ 403 (533) -++| +..|...+-.+.++|+++|-..+..|-+++---|...|+.+|.++|.. +...|++- +. -++-+++|+|.|++ T Consensus 53 Gl~d~l~~~~~~iaa~s~iP~t~LfG~sp~Glnatge~d~~nyyd~i~~~Qe~~l~p~le~l-~~-~~~~~~~~~~~f~p 130 (201) T protein:vir:10 53 GIDTFLSQKFDRIVALSGIHEIILKGKNVGGVSASQNTALETFYGYVDRKRKAELLPLLEFL-LP-FIVTEQEWSVEFNP 130 (201) T ss_pred ChHHHHHHHHHHHHhHhcCchhhhcCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HH-hhcCCCCceEeeCC Confidence 4444 889999999999999999987776666555555666799999999965 45666543 22 24557899999998 Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCc Q lcl|Aclame:pro 404 SNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSP 483 (533) Q Consensus 404 dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (533) =..-++...+||.....++++.+- ...-++.++..+ .....+..+-.++...+++. ...+-.+| T Consensus 131 L~~~s~kekAei~~~~a~a~~~~~----------~~g~i~~~e~r~--~L~~~~~~~~~~~~~~~~~~----~~~e~~dp 194 (201) T protein:vir:10 131 LSQVSDKDKSEILEKNVNSVAALI----------AAGIIDADEARD--TLRAISTEVKIGEGSIQTEV----VINESEDP 194 (201) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH----------HcCCCCHHHHHH--HHHhcCCcCCCCCCCCCccc----cccccCCC Confidence 888889999999999998887741 122233322211 11112222222222222222 22222344 Q ss_pred ccccCCC Q lcl|Aclame:pro 484 IESPRGR 490 (533) Q Consensus 484 ~~~~~~~ 490 (533) .+.|... T Consensus 195 ~~~~~~~ 201 (201) T protein:vir:10 195 LDVSANN 201 (201) T ss_pred CCCCCCC Confidence 4444322 No 144 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=97.88 E-value=1.3e-05 Score=47.38 Aligned_cols=413 Identities=14% Similarity=0.039 Sum_probs=179.6 Q ss_pred ccCcccCCCCcccCCCC----Cccc---c--chhhcccccCccc--cc-----hHHHHHHHHHHhhcChhHHHHHHHhhc Q lcl|Aclame:pro 26 MGAPHGAGGSSMIPINM----YHPF---A--TAGYASRFYGGIE--FN-----RFFLYDMYDRMDYTDPLISTVLDIIAD 89 (533) Q Consensus 26 ~~~p~~~~gas~i~~~~----~~~~---~--~~~~~~~~ygg~~--~n-----~~~li~~YR~m~~~~PEV~~AId~Ivn 89 (533) |+ ++...+..-+|+.. .... + ..+.+. .|+|.. .+ .+..++-|+.|.. |++|.++++.... T Consensus 1 m~-k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~iLr~~~~~~ly~~m~~-D~hi~s~l~~Rk~ 77 (448) T protein:vir:79 1 MA-KRGRKPKELVPGPGSIDPSDVPKLEGASVPVMST-SYDVVVDREFDELLQGKDGLLVYHKMLS-DGTVKNALNYIFG 77 (448) T ss_pred CC-CCCCCCccccCcccccccccchhhhhhhhhhccc-ccccccccchhHhhccccchHHHHHHhh-ChHHHHHHHHHHH Confidence 33 22222222122210 0110 0 011111 122221 11 1234788999975 9999999999987 Q ss_pred eeeecCCCCceeeeecccccccHHHHHHHHH------HhhhHHHHHHHHHHHhhcCceeEEEeecCCCCC---eeeeEEc Q lcl|Aclame:pro 90 ECTIPNENGNIVDVVTKDIELAKAILSYLDY------VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGT---IEKFQVV 160 (533) Q Consensus 90 eaiv~d~~~~~v~v~l~~~e~s~si~~~i~~------ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~g---I~elr~l 160 (533) -+...+-.-.|-+-+-.+.+..+.+.+.+.. ...|+..+.+... -+.+|-.+++++-+...+| +..+... T Consensus 78 av~~~~w~v~p~~~~~~~~~~ae~v~~~l~~~~~~~~~~~f~~~~~~~ld-a~~~G~s~~Eivw~~~~~g~~~~~~l~~r 156 (448) T protein:vir:79 78 RIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYEN-AYIYGMAAGEIVLTLGADGKLILDKIVPI 156 (448) T ss_pred HHhcCCceEecCCCCHHHHHHHHHHHHHhhhhhhhhccCCHHHHHHHHHH-hhhhcceeEEEEeeecCCCceeccccccc Confidence 6553433322211111111122222222211 1245554444433 4578889999887644444 3455556 Q ss_pred Ccceee-EEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 SPYIFS-KRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALML 239 (533) Q Consensus 161 dP~~ik-~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVI 239 (533) +|+++. +.++..+.-.....+..............+|...++|+++. -+++ ++|.|.|..|..+|-..+......+. T Consensus 157 ~~~~~~~f~~~~d~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~-~~g~-p~g~gLlr~~~w~~~fK~~~~~~w~~ 234 (448) T protein:vir:79 157 HPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVSGLEIPIWKTVVFLHN-DDGS-FTGQSALRAAVPHWLAKRALILLINH 234 (448) T ss_pred CCccccceeeecCCceEEeecCCcccccccCCCccccccceEEEEecC-ccCC-cccchhHHHHHHHHHHHHHHHHHHHH Confidence 777663 34555554333322222111112234456677889988764 3443 79999999999999999998887777 Q ss_pred HHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeec Q lcl|Aclame:pro 240 YRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDIL 319 (533) Q Consensus 240 yRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TL 319 (533) +=-.-.-.=|+..++.|.-...+..+-+..++..++ -+...|-| + -.|++|+.+ T Consensus 235 f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~----~g~~a~~i-----------------i-----P~~~~ie~~ 288 (448) T protein:vir:79 235 GLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFV----QKPRHGII-----------------L-----PDDWKFDTV 288 (448) T ss_pred HHHHcCCceEEEecCCCCCcCHHHHHHHHHHHHHHh----cCCceEEE-----------------e-----cCCceEEEE Confidence 654434333467777664222222222333322221 12222222 1 145788888 Q ss_pred CCC-CCChH-HHHHHHHHHHHHhcCCCeeeccCCCCccchhhh-hHHHHHHHHHHHHHHHHHHHHHhhhhh-----hccC Q lcl|Aclame:pro 320 QGS-KVDLA-EDVEYMLNRLISALKVPKAFIGYEGDVNAKNTL-ATQDIKFNNTIKRIQGFFVEELERMVR-----MNKE 391 (533) Q Consensus 320 pG~-nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI-~rde~kF~kfI~rLr~~F~~~l~~qLi-----lk~i 391 (533) ..+ +.+.. +=++|..+++-+++-= .-|..+.+.|.++.- ..-.-.+.+-++.-.+.+.+.|.+||| +|-- T Consensus 289 ea~~~~~~~~~~i~~~d~~Isk~iLG--qtlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~li~~l~~lNfg 366 (448) T protein:vir:79 289 DLKSAMPDAIPYLTYHDAGIARALGI--DFNTVQLNMGVQAINIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWP 366 (448) T ss_pred ecCCCcccHHHHHHHHHHHHHHHHhh--hhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 642 32211 2388999988776532 223444443332222 111112344444444445555555554 3311 Q ss_pred CCccce-eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccc Q lcl|Aclame:pro 392 FADQDF-RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEE 470 (533) Q Consensus 392 ~t~eew-~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~ 470 (533) ..+.- ++.|- ..|-.+..-+.+++..|..+. .+...|+++. +.+.+ +.+....+ T Consensus 367 -~~~~~P~~~f~----~~e~~Dl~~~a~~~~~l~~~~-~~~~~~~~~~-~~~p~------------------~~~~~~~~ 421 (448) T protein:vir:79 367 -SATRFPRLTFE----MEERNDFSAAANLMGMLINAV-KDSEDIPTEL-KALID------------------ALPSKMRR 421 (448) T ss_pred -CcCCCcEEEec----CCChHHHHHHHHHhhhhhccc-hhhHHHHHHh-hcCCC------------------CCCCcccc Confidence 11111 33332 123344444556665554432 1222232221 11111 01110001 Q ss_pred cchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchh Q lcl|Aclame:pro 471 TTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEE 518 (533) Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (533) ..+ .... +-+.++++ .++-. -.+.-+- T Consensus 422 a~~-~~~~----~~~~~~~~--~~~~~--------------~~~~~~~ 448 (448) T protein:vir:79 422 ALG-VVDE----VREAVRQP--ADSRY--------------LYTRRRR 448 (448) T ss_pred ccC-CCCc----ccccccCC--ccccc--------------hhhcccC Confidence 000 0000 00111111 11111 0000000 No 145 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=97.88 E-value=1.3e-05 Score=47.34 Aligned_cols=422 Identities=11% Similarity=0.037 Sum_probs=161.0 Q ss_pred hhhhhhHHHHHHhhcccc-cccCcccCCCC---cccCCCCCccc-cchhhcccccCccccchHHHHHHHHHHhh-cC--- Q lcl|Aclame:pro 7 YKKLNEAVNFTNFLSPMY-GMGAPHGAGGS---SMIPINMYHPF-ATAGYASRFYGGIEFNRFFLYDMYDRMDY-TD--- 77 (533) Q Consensus 7 w~k~de~~~~~~~~~~~~-s~~~p~~~~ga---s~i~~~~~~~~-~~~~~~~~~ygg~~~n~~~li~~YR~m~~-~~--- 77 (533) --|++|-+-+..+.-.+- .|....+..=. .+.... .++- -..++. .+ .......++++++.+. .| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~-~~~~~i~~~i~-~~----~~~~~~r~~~l~~Yy~g~~~i~ 74 (511) T protein:vir:99 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLL-QNVNEVSKYIE-HH----MDYQRPRLKVLSDYYEGKTKNL 74 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhCCccccchhhhhhh-ccHHHHHHHHH-HH----HHhhHHHHHHHHHHhcccCccc Confidence 223333333322221111 11111110000 000000 0000 000000 00 0000011111111110 11 Q ss_pred ------------------hhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcC Q lcl|Aclame:pro 78 ------------------PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYG 139 (533) Q Consensus 78 ------------------PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDG 139 (533) +-+.-+|+..+...+ +.|+.+...+.+ .++....|.+.-+|+.+..++++..++.| T Consensus 75 ~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~-----g~p~~~~~~d~~-~~~~l~~~~~~n~~~~~~~~~~~~~~i~G 148 (511) T protein:vir:99 75 VELTRRKEEYMADNRVAHDYASYISDFINGYFL-----GNPIQYQDDDKD-VLEAIEAFNDLNDVESHNRSLGLDLSIYG 148 (511) T ss_pred cccCcccccccCcceeecchHHHHHHHHHhhhc-----ccCceeecCchH-HHHHHHHHHhhcCHhHHHHHHHHHHHhcC Confidence 222233333332222 456666655422 22223334444479999999999999999 Q ss_pred ceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCcE------EEE-----------------Eeccccee--cccCCccc Q lcl|Aclame:pro 140 DMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDT------WYY-----------------VITDVYRN--VVSGYFNE 194 (533) Q Consensus 140 r~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~------e~y-----------------~y~~~~~~--~~~~~~~~ 194 (533) +.|.+...|. +|-..+..+||+.+-++++..+.. .+| +|+....+ ...+.... T Consensus 149 ~a~~~vy~de--d~~~~i~~~~p~~~~~vyd~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~ 226 (511) T protein:vir:99 149 KAYELMIRNQ--DDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGL 226 (511) T ss_pred eeEEEEEeCC--CCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCccc Confidence 9999988763 455679999999999999876431 111 22222111 00011100 Q ss_pred ------------ccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHH--HHHHHhccccceeeecCCCCCch Q lcl|Aclame:pro 195 ------------DIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDAL--MLYRVVRSVDRRVFYVDVGNVPP 260 (533) Q Consensus 195 ------------~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Edal--VIyRi~RAPeRr~fyidvGnlp~ 260 (533) .+..=.+++|.. .+.|.|-++.++....-|-.+--.+ .+. -.+.|-+-+. |... T Consensus 227 ~~~~~~~~~~~~~~g~vPvv~~~n------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~-~~~~~~lv~~----G~~~- 294 (511) T protein:vir:99 227 KLTPRENGFESHSFERMPITEFSN------NERRKGDYEKVITLIDLYDNAESDTANYMS-DLNDAMLLIK----GNLN- 294 (511) T ss_pred cccccccccccCCCCccceEEecC------CCCCCCchhhhHHHHHHHHHHHHHHHHHHH-Hhhchhhhhc----cCcc- Confidence 011112344432 1355666665444444333222211 111 1122211111 1000 Q ss_pred hhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccc--------cCCCcceeeecCCC-CCChH-HHH Q lcl|Aclame:pro 261 DKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRR--------GDRRAVEIDILQGS-KVDLA-EDV 330 (533) Q Consensus 261 ~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR--------~g~~gtEi~TLpG~-nlg~i-~Dv 330 (533) ..++++..+++. .+ +|++.. ....|..+..|-.. +...+ .-+ T Consensus 295 ---------------------~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~ 346 (511) T protein:vir:99 295 ---------------------LDPVEVRKQKEA----NV---LFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYK 346 (511) T ss_pred ---------------------cCchhhcccccc----cc---eecccccccccccccCCCCcceeEEeecCCHHHHHHHH Confidence 000111111110 00 111111 11223344444322 33222 337 Q ss_pred HHHHHHHHHhcCCCeeeccCCCCccchhhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--hh-----cc-CCCccce--- Q lcl|Aclame:pro 331 EYMLNRLISALKVPKAFIGYEGDVNAKNTLAT--QDIKFNNTIKRIQGFFVEELERMV--RM-----NK-EFADQDF--- 397 (533) Q Consensus 331 ~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--il-----k~-i~t~eew--- 397 (533) +-+.+.+|....+|--..+.-+ |+.|..+. -......-+.+.++.|...|++.+ |+ ++ .-...+| T Consensus 347 ~~L~~~I~~~s~~P~~~~~~~~--gn~Sg~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~i 424 (511) T protein:vir:99 347 DRLNSDIHMFTNTPNMKDDNFS--GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDVSKDFNTV 424 (511) T ss_pred HHHHHHHHHHhCCccccccccc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccc Confidence 7788899999999974332211 33333332 222233345555566766555432 21 22 2234455 Q ss_pred eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhc Q lcl|Aclame:pro 398 RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFL 477 (533) Q Consensus 398 ~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~ 477 (533) ++.|.+..--.+.. .++++..+..-+++.++.+.+-..+| -.++-+.|++|..+...... ... T Consensus 425 ~i~f~~~~p~n~~e-------~~~~~~kl~GiiS~et~l~~l~~v~D-~~~E~~ri~~E~~~~~~~~~---------~~~ 487 (511) T protein:vir:99 425 RYVYNRNLPKSLIE-------ELKAYIDSGGKISQTTLMSLFSFFQD-PELEVKKIEEDEKESIKKAQ---------KNM 487 (511) T ss_pred eEEeCCCCCcCHHH-------HHHHHHHHhccCCHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHHh---------hcc Confidence 67776433322222 23344455567899998887644443 33334555555432111100 000 Q ss_pred CccCCcccccCCCcccccCCCCCcc Q lcl|Aclame:pro 478 GERGSPIESPRGRTEFDFGTEGGEE 502 (533) Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (533) +....+.+....+ +....+.+.+| T Consensus 488 ~~~~~~~~~~~~~-~~~~~~~d~~e 511 (511) T protein:vir:99 488 YQDPRNINDDEQD-DSTKDSIDKKE 511 (511) T ss_pred cccCCCCCCCCCC-CCCcCcccccC Confidence 1111110000000 00011111111 No 146 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=97.87 E-value=1.4e-05 Score=47.27 Aligned_cols=428 Identities=11% Similarity=0.034 Sum_probs=159.9 Q ss_pred hhhhhhHHHHHHhhcccc-cccCcccCCCC-cccCCCCCccccc--hhhcccccCccccchHHHHHHHHHHh-hcC---- Q lcl|Aclame:pro 7 YKKLNEAVNFTNFLSPMY-GMGAPHGAGGS-SMIPINMYHPFAT--AGYASRFYGGIEFNRFFLYDMYDRMD-YTD---- 77 (533) Q Consensus 7 w~k~de~~~~~~~~~~~~-s~~~p~~~~ga-s~i~~~~~~~~~~--~~~~~~~ygg~~~n~~~li~~YR~m~-~~~---- 77 (533) --|++|-+-+..+...+- .|....+..=. ...+-+.....-. ..+. .+ .......++++++.+ -.| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~-~~----~~~~~~r~~~l~~Yy~g~~~il~ 75 (511) T protein:vir:96 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIE-HH----MDYQRPRLKVLSDYYEGKTKNLV 75 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhCCcccccchhhhhhcCHHHHHHHHH-HH----HHhhhHHHHHHHHHhhccCcccc Confidence 223333222222221110 11111110000 0000000000000 0000 00 000000111111110 011 Q ss_pred -----------------hhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCc Q lcl|Aclame:pro 78 -----------------PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGD 140 (533) Q Consensus 78 -----------------PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr 140 (533) +-+.-+++..+...+ +.|+.+...+-+ .++.+..|...-+|+....++.+.+++.|+ T Consensus 76 ~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~-----g~p~~~~~~d~~-~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~ 149 (511) T protein:vir:96 76 ELTRRKEEYMADNRVAHDYASYISDFINGYFL-----GNPIQYQDDDKD-VLEAIEAFNDLNDVESHNRSLGLDLSIYGK 149 (511) T ss_pred ccCcccccccCcceeecchHHHHHHHHhhhhc-----ccCceeecCchH-HHHHHHHHHhhcChhHHHHHHHHHHHhcCe Confidence 223333444433222 567777665422 222333444445789999999999999999 Q ss_pred eeEEEeecCCCCCeeeeEEcCcceeeEEeeccCcE--EE----E-----------------Eeccccee--cccCCccc- Q lcl|Aclame:pro 141 MFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDT--WY----Y-----------------VITDVYRN--VVSGYFNE- 194 (533) Q Consensus 141 ~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~--e~----y-----------------~y~~~~~~--~~~~~~~~- 194 (533) .|.+...| ++|-..+..++|+.+-++++..+.. .+ | +|+....+ ...++... T Consensus 150 a~~~vy~d--~dg~~~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~ 227 (511) T protein:vir:96 150 AYELMIRN--QDDETRLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLK 227 (511) T ss_pred eEEEEEeC--CCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccc Confidence 99988776 3566679999999999999865531 11 1 22322111 00001000 Q ss_pred -----------ccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHH--HHHHHHHhccccceeeecCCCCCchh Q lcl|Aclame:pro 195 -----------DIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMED--ALMLYRVVRSVDRRVFYVDVGNVPPD 261 (533) Q Consensus 195 -----------~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed--alVIyRi~RAPeRr~fyidvGnlp~~ 261 (533) .+..-.++.|.. ...|.|-++.++....-|-.+-- +-.+.. .+.|-+-+.- ..+ .. T Consensus 228 ~~~~~~~~~~~~~g~vPvv~~~n------~~~g~gd~e~v~~liDa~~~~~S~~~~~~~~-~~~~~lv~~G-~~~-~~-- 296 (511) T protein:vir:96 228 LTPRENSFESHSFERMPITEFSN------NERRKGDYEKVITLIDLYDNAESDTANYMSD-LNDAMLLIKG-NLN-LD-- 296 (511) T ss_pred ccccccccccCcCcccceEEecC------CCCCCCchhhhHHHHHHHHHHHHHHHHHHHH-hhcchhheec-Ccc-CC-- Confidence 011111233221 12466666654444333322211 111211 1122111111 000 00 Q ss_pred hHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhh---hhcccccCCCcceeeecCCC-CCChH-HHHHHHHHH Q lcl|Aclame:pro 262 KINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKD---YFIPRRGDRRAVEIDILQGS-KVDLA-EDVEYMLNR 336 (533) Q Consensus 262 kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleD---ywlprR~g~~gtEi~TLpG~-nlg~i-~Dv~Yf~~k 336 (533) .+++..++.. .+-.+.. +.........+..+..|-.. +...+ .-+.-+.+. T Consensus 297 ----------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~ 352 (511) T protein:vir:96 297 ----------------------PVEVRKQKEA--NVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSD 352 (511) T ss_pred ----------------------chhhcccccc--cceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHH Confidence 0000000000 0000000 00111112223344444322 33222 336778889 Q ss_pred HHHhcCCCeeeccCCCCccchhhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--hh-----cc-CCCccce---eEEecC Q lcl|Aclame:pro 337 LISALKVPKAFIGYEGDVNAKNTLAT--QDIKFNNTIKRIQGFFVEELERMV--RM-----NK-EFADQDF---RLVMNR 403 (533) Q Consensus 337 Ly~aL~VP~srl~~~~~~gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--il-----k~-i~t~eew---~~~f~~ 403 (533) ++.-.++|---.+.-+ |..|..+. -......-+.+.++.|...|++-+ |+ ++ +-...+| ++.|.+ T Consensus 353 I~~~s~~P~~~~~~~~--~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~ 430 (511) T protein:vir:96 353 IHMFTNTPNMKDDNFS--GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNR 430 (511) T ss_pred HHHHhCCccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCC Confidence 9999999964333211 33333332 222223344555555665554432 21 12 2234455 677865 Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCc Q lcl|Aclame:pro 404 SNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSP 483 (533) Q Consensus 404 dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (533) .---.+... ++++..+..-++++++.+.+- ..++-.++-+.|++|.+....... .....++ T Consensus 431 ~~p~n~~e~-------~d~~~kl~G~iS~et~l~~l~-~v~d~~~El~ri~~E~~~~~~~~~-----------~~~~~~~ 491 (511) T protein:vir:96 431 NLPKSLIEE-------LKAYIDSGGKISQTTLMSLFS-FFQDPELEVKKIEEDEKESIKKAQ-----------KGIYKDP 491 (511) T ss_pred CCCcCHHHH-------HHHHHHHhccCChHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHh-----------hccccCC Confidence 333222222 344555556789999887654 444433444556666432111100 0000010 Q ss_pred ccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccC Q lcl|Aclame:pro 484 IESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEE 526 (533) Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (533) . +....+.+ + +++....+++ T Consensus 492 ~--~~~~~~~~----~-----------------~~~~~~~e~~ 511 (511) T protein:vir:96 492 R--DINDDEQD----D-----------------DTKDTVDKKE 511 (511) T ss_pred C--CCCCCCCC----C-----------------CccCcccccC Confidence 0 00000000 0 0000000000 No 147 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=97.87 E-value=1.4e-05 Score=47.27 Aligned_cols=428 Identities=11% Similarity=0.034 Sum_probs=159.9 Q ss_pred hhhhhhHHHHHHhhcccc-cccCcccCCCC-cccCCCCCccccc--hhhcccccCccccchHHHHHHHHHHh-hcC---- Q lcl|Aclame:pro 7 YKKLNEAVNFTNFLSPMY-GMGAPHGAGGS-SMIPINMYHPFAT--AGYASRFYGGIEFNRFFLYDMYDRMD-YTD---- 77 (533) Q Consensus 7 w~k~de~~~~~~~~~~~~-s~~~p~~~~ga-s~i~~~~~~~~~~--~~~~~~~ygg~~~n~~~li~~YR~m~-~~~---- 77 (533) --|++|-+-+..+...+- .|....+..=. ...+-+.....-. ..+. .+ .......++++++.+ -.| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~-~~----~~~~~~r~~~l~~Yy~g~~~il~ 75 (511) T protein:vir:78 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIE-HH----MDYQRPRLKVLSDYYEGKTKNLV 75 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhCCcccccchhhhhhcCHHHHHHHHH-HH----HHhhhHHHHHHHHHhhccCcccc Confidence 223333222222221110 11111110000 0000000000000 0000 00 000000111111110 011 Q ss_pred -----------------hhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCc Q lcl|Aclame:pro 78 -----------------PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGD 140 (533) Q Consensus 78 -----------------PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr 140 (533) +-+.-+++..+...+ +.|+.+...+-+ .++.+..|...-+|+....++.+.+++.|+ T Consensus 76 ~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~-----g~p~~~~~~d~~-~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~ 149 (511) T protein:vir:78 76 ELTRRKEEYMADNRVAHDYASYISDFINGYFL-----GNPIQYQDDDKD-VLEAIEAFNDLNDVESHNRSLGLDLSIYGK 149 (511) T ss_pred ccCcccccccCcceeecchHHHHHHHHhhhhc-----ccCceeecCchH-HHHHHHHHHhhcChhHHHHHHHHHHHhcCe Confidence 223333444433222 567777665422 222333444445789999999999999999 Q ss_pred eeEEEeecCCCCCeeeeEEcCcceeeEEeeccCcE--EE----E-----------------Eeccccee--cccCCccc- Q lcl|Aclame:pro 141 MFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDT--WY----Y-----------------VITDVYRN--VVSGYFNE- 194 (533) Q Consensus 141 ~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~--e~----y-----------------~y~~~~~~--~~~~~~~~- 194 (533) .|.+...| ++|-..+..++|+.+-++++..+.. .+ | +|+....+ ...++... T Consensus 150 a~~~vy~d--~dg~~~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~ 227 (511) T protein:vir:78 150 AYELMIRN--QDDETRLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLK 227 (511) T ss_pred eEEEEEeC--CCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccc Confidence 99988776 3566679999999999999865531 11 1 22322111 00001000 Q ss_pred -----------ccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHH--HHHHHHHhccccceeeecCCCCCchh Q lcl|Aclame:pro 195 -----------DIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMED--ALMLYRVVRSVDRRVFYVDVGNVPPD 261 (533) Q Consensus 195 -----------~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed--alVIyRi~RAPeRr~fyidvGnlp~~ 261 (533) .+..-.++.|.. ...|.|-++.++....-|-.+-- +-.+.. .+.|-+-+.- ..+ .. T Consensus 228 ~~~~~~~~~~~~~g~vPvv~~~n------~~~g~gd~e~v~~liDa~~~~~S~~~~~~~~-~~~~~lv~~G-~~~-~~-- 296 (511) T protein:vir:78 228 LTPRENSFESHSFERMPITEFSN------NERRKGDYEKVITLIDLYDNAESDTANYMSD-LNDAMLLIKG-NLN-LD-- 296 (511) T ss_pred ccccccccccCcCcccceEEecC------CCCCCCchhhhHHHHHHHHHHHHHHHHHHHH-hhcchhheec-Ccc-CC-- Confidence 011111233221 12466666654444333322211 111211 1122111111 000 00 Q ss_pred hHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhh---hhcccccCCCcceeeecCCC-CCChH-HHHHHHHHH Q lcl|Aclame:pro 262 KINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKD---YFIPRRGDRRAVEIDILQGS-KVDLA-EDVEYMLNR 336 (533) Q Consensus 262 kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleD---ywlprR~g~~gtEi~TLpG~-nlg~i-~Dv~Yf~~k 336 (533) .+++..++.. .+-.+.. +.........+..+..|-.. +...+ .-+.-+.+. T Consensus 297 ----------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~ 352 (511) T protein:vir:78 297 ----------------------PVEVRKQKEA--NVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSD 352 (511) T ss_pred ----------------------chhhcccccc--cceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHH Confidence 0000000000 0000000 00111112223344444322 33222 336778889 Q ss_pred HHHhcCCCeeeccCCCCccchhhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--hh-----cc-CCCccce---eEEecC Q lcl|Aclame:pro 337 LISALKVPKAFIGYEGDVNAKNTLAT--QDIKFNNTIKRIQGFFVEELERMV--RM-----NK-EFADQDF---RLVMNR 403 (533) Q Consensus 337 Ly~aL~VP~srl~~~~~~gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--il-----k~-i~t~eew---~~~f~~ 403 (533) ++.-.++|---.+.-+ |..|..+. -......-+.+.++.|...|++-+ |+ ++ +-...+| ++.|.+ T Consensus 353 I~~~s~~P~~~~~~~~--~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~ 430 (511) T protein:vir:78 353 IHMFTNTPNMKDDNFS--GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNR 430 (511) T ss_pred HHHHhCCccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCC Confidence 9999999964333211 33333332 222223344555555665554432 21 12 2234455 677865 Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCc Q lcl|Aclame:pro 404 SNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSP 483 (533) Q Consensus 404 dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (533) .---.+... ++++..+..-++++++.+.+- ..++-.++-+.|++|.+....... .....++ T Consensus 431 ~~p~n~~e~-------~d~~~kl~G~iS~et~l~~l~-~v~d~~~El~ri~~E~~~~~~~~~-----------~~~~~~~ 491 (511) T protein:vir:78 431 NLPKSLIEE-------LKAYIDSGGKISQTTLMSLFS-FFQDPELEVKKIEEDEKESIKKAQ-----------KGIYKDP 491 (511) T ss_pred CCCcCHHHH-------HHHHHHHhccCChHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHh-----------hccccCC Confidence 333222222 344555556789999887654 444433444556666432111100 0000010 Q ss_pred ccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccC Q lcl|Aclame:pro 484 IESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEE 526 (533) Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (533) . +....+.+ + +++....+++ T Consensus 492 ~--~~~~~~~~----~-----------------~~~~~~~e~~ 511 (511) T protein:vir:78 492 R--DINDDEQD----D-----------------DTKDTVDKKE 511 (511) T ss_pred C--CCCCCCCC----C-----------------CccCcccccC Confidence 0 00000000 0 0000000000 No 148 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=97.86 E-value=1.4e-05 Score=47.19 Aligned_cols=386 Identities=12% Similarity=0.063 Sum_probs=160.7 Q ss_pred hhcccccccCcccCCCCcccCCCCCccccchhhcccccCcccc---chHHHHHHH---HHHhhcChhHHHHHHHhhceee Q lcl|Aclame:pro 19 FLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEF---NRFFLYDMY---DRMDYTDPLISTVLDIIADECT 92 (533) Q Consensus 19 ~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~---n~~~li~~Y---R~m~~~~PEV~~AId~Ivneai 92 (533) |...+.+--.|.- .. ...+|-|... ........+ .++ ..+-+..+|+..+...+ T Consensus 1 ~~~~~~~~~~~r~----------------~~--l~~yy~g~~~~~~~~~~~~~~~~~~~ki--~~n~~~~ivd~~~~~l~ 60 (440) T protein:vir:95 1 MLAAFLGSQKQRL----------------AI--LASYAQGDNFSILSGHRRLDDEKADYRV--RHKWGGYISSFATGYVI 60 (440) T ss_pred ChhhHHHHHHHHH----------------HH--HHHHhccCCcccccccccccccCCccee--ecchHHHHHHhhhhhee Confidence 0000000000000 00 0011111100 000000000 011 12344555555554443 Q ss_pred ecCCCCceeeeecccccccHHHHHHHHH---HhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEe Q lcl|Aclame:pro 93 IPNENGNIVDVVTKDIELAKAILSYLDY---VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRY 169 (533) Q Consensus 93 v~d~~~~~v~v~l~~~e~s~si~~~i~~---ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~ 169 (533) +.|+.+...+. -+++..+.|.+ .-+|+....+..+..++.|+.|.+...| ++|-..+..++|+.+.+++ T Consensus 61 -----g~~~~~~~~~~-~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d--~~~~~~i~~~~p~~~~~~~ 132 (440) T protein:vir:95 61 -----GNPVSIGVMEG-GSADQLSTIKDIEWQNDINALNSDLAFDASVYGRAYEYHFRD--KDKVDRVVLISPLEMFVIR 132 (440) T ss_pred -----ccCceEeeCCC-ccHHHHHHHHHHHHhcCHhHHHHHHHHHHhhcCeEEEEEEec--CCCceEEEEEcccceEEEE Confidence 44555554432 23333344433 3478999999999999999999998776 3455568899999999999 Q ss_pred eccCcE--EEE-------------Eeccccee--cc--cCCcc--------cccCcccEEEEecCcccCcccccchhHHH Q lcl|Aclame:pro 170 NPETDT--WYY-------------VITDVYRN--VV--SGYFN--------EDIPEEDVIHFSHKIDTNFFPYGRSYLES 222 (533) Q Consensus 170 d~~g~~--e~y-------------~y~~~~~~--~~--~~~~~--------~~~~~~dvi~~~~~~~~d~~~~g~s~L~~ 222 (533) +..+.. .++ +|+....+ .. .+... +.+..=.+++|.- ...|.|-++. T Consensus 133 d~~~~~~~~~~i~~~~~~~~~~~~vyt~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n------~~~g~sd~e~ 206 (440) T protein:vir:95 133 DLTVEQNIIAAVHLPIYADKVNMTVYTKDKVITYKPYSNNSVRLVVDDVKKHSYNDVPVVEWWN------NRFRMGDYES 206 (440) T ss_pred cCCCCCceEEEEEEEEecCceEEEEEeCCeEEEEEEecCCccceeecceeeccCceeeEEEeeC------CCCCCCchhh Confidence 887642 111 12222111 10 00000 1111112333321 1245565555 Q ss_pred HHHHHHHHHHHHH-HHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHh Q lcl|Aclame:pro 223 ARAIWNQLRLMED-ALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILK 301 (533) Q Consensus 223 Aik~~NqLrm~Ed-alVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smle 301 (533) .+.....+-++=- .+..-+-.+.|-+-+.-...+.-.. .+... +.++.. + T Consensus 207 v~~lida~~~~~s~~~~~~~~~~~~~~v~~g~~~~~~~~---~e~~~----~~~~~~------------------~---- 257 (440) T protein:vir:95 207 EISLIDAYDAGQSDTANYMSDLNDAMLLVKGDLDGIKLS---PEDAA----KMKDAN------------------M---- 257 (440) T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcceeeeecccccCCCC---ccchh----hhhhcc------------------c---- Confidence 4444433332221 2222233333332222111111000 00011 111100 0 Q ss_pred hhhcccc----cCCCcceeeecCC-CCCChH-HHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhH--HHHHHHHHHHH Q lcl|Aclame:pro 302 DYFIPRR----GDRRAVEIDILQG-SKVDLA-EDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLAT--QDIKFNNTIKR 373 (533) Q Consensus 302 DywlprR----~g~~gtEi~TLpG-~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~r--de~kF~kfI~r 373 (533) +|++.. .++.+..++.|-. .++... .-++.+.+.+|...++|---++.- .|+.|..+. -+.....-+.+ T Consensus 258 -~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~--~~n~Sg~Al~~~~~~l~~k~~~ 334 (440) T protein:vir:95 258 -LFLKTGISTTGQQTTADASYIYKQYDVNGTEAYKNRLANDIHRFSRIPNLDDDRF--NSTSSGIALLYKMIGLEQVRKD 334 (440) T ss_pred -eecccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccc--cccchHHHHHHHHHHHHHHHHH Confidence 222221 1233345555533 244433 448889999999999995322211 123333332 22223334556 Q ss_pred HHHHHHHHHhhh--hhhc--cCCC-----ccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCh Q lcl|Aclame:pro 374 IQGFFVEELERM--VRMN--KEFA-----DQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPY 444 (533) Q Consensus 374 Lr~~F~~~l~~q--Lilk--~i~t-----~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~td 444 (533) .|+.|..-|+.- ||++ +... ..+..+.|...-.-.+...++ ++..+...++++.+.+.+-..++ T Consensus 335 k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~v~i~f~~~~p~~~~~~ad-------~~~kl~g~iS~et~~~~l~~~d~ 407 (440) T protein:vir:95 335 KETYFTKALRRRYELISNIHKAINGPVIEANKLTFTFHPNIPQDVWTEIK-------AYIEAGGEISQETLMENASFTDY 407 (440) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcccccccceEEeCCCCCCCHHHHHH-------HHHHHhccCcHHHHHHhCCCCCc Confidence 666676655442 3221 1222 223357776554433433333 34444557899999887665543 Q ss_pred hhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcc Q lcl|Aclame:pro 445 DLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTE 492 (533) Q Consensus 445 e~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (533) + ++.++|++|......+ ...+.++ .++...++ | T Consensus 408 ~--~E~~ri~~E~~~~~~~---~~~~~~~--~~~~~~~~--------e 440 (440) T protein:vir:95 408 K--TEHSRILKQGGSSDLE---IGQIVGD--ADVGQADT--------E 440 (440) T ss_pred H--HHHHHHHHHHHHhhhh---HHhhccC--CCCCCcCC--------C Confidence 2 2345555554321111 0000000 01111111 0 No 149 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=97.84 E-value=1.5e-05 Score=46.99 Aligned_cols=374 Identities=11% Similarity=0.060 Sum_probs=159.7 Q ss_pred cCCCCCccccchhhcccccCccccchHHHHHHHHHHhhc----------------------------------ChhHHHH Q lcl|Aclame:pro 38 IPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYT----------------------------------DPLISTV 83 (533) Q Consensus 38 i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~----------------------------------~PEV~~A 83 (533) +.+. .-.-+..- ........+.+|..+... ++-+... T Consensus 1 ~~~~----~~~~~i~~-----~~~~~~~~~~~~~~~~~Yy~g~~~I~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~k~I 71 (470) T protein:vir:10 1 MELD----ALKKLIQN-----TSTSRNDLINNYKQAVNYYENKTDITTRNNGKAKLNKEGKKDPLRSADNRIPSNFYQLL 71 (470) T ss_pred CchH----HHHHHHHH-----HHHHHHHHHHHHHHHHHHhccccchhccccchhcccccccccccccCCcccccchHHHH Confidence 1110 00000000 000111223333332211 1112222 Q ss_pred HHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcc Q lcl|Aclame:pro 84 LDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPY 163 (533) Q Consensus 84 Id~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~ 163 (533) |+..+...+ +.|+.+...+.+..+.+.+.+.+ +|+....++.+.|.+.|+.|.+..+|. +|...+..+||. T Consensus 72 v~~~~~yl~-----G~p~~~~~~d~~~~~~l~~~~~~--~~~~~~~~l~~~~~~~G~a~~~~y~d~--~~~~~~~~~~p~ 142 (470) T protein:vir:10 72 VDQEAGYVA-----SVFPDIDVGKDADNKKIIDVLGD--DRALTLNGLLVDSSNAGRAWLHYWIDE--DGNFRYGIIQPD 142 (470) T ss_pred HHhhhhhee-----ccceeeecCchHHHHHHHHHHhh--hHHHHHHHHHHHHhhcCeeEEEEEecC--CCceEEEEEccc Confidence 222222221 46677776654333333333222 688889999999999999999998863 566789999999 Q ss_pred eeeEEeeccCc--E----EEEE---------------ecccce--ecccCCcccc------------------------- Q lcl|Aclame:pro 164 IFSKRYNPETD--T----WYYV---------------ITDVYR--NVVSGYFNED------------------------- 195 (533) Q Consensus 164 ~ik~v~d~~g~--~----e~y~---------------y~~~~~--~~~~~~~~~~------------------------- 195 (533) .+-++++.... . .+|. |+.... +...+..... T Consensus 143 ~~~~v~d~~~~~~~~a~ir~y~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (470) T protein:vir:10 143 QITPIYATTLDNKLLGILRSYKQLDPDSGKYFTVHEYWTDKEAQFFRTNATDSTVIEPYNIITSYDLSAGYETGQSNTLK 222 (470) T ss_pred ceEEEEcCCCCCceEEEEEEEEeeecCCceEEEEEEEEcCCcEEEEEeecCcceeccccccccccccccccccccccccc Confidence 99999876532 1 1221 111100 0000000000 Q ss_pred --cCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHH-HHHHHHhccccceeeecCCCCCchhhHHHHHHHHHH Q lcl|Aclame:pro 196 --IPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDA-LMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAM 272 (533) Q Consensus 196 --~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Eda-lVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~ 272 (533) +..=.+++|. + ...|.|-|+..+.....|-.+--. .-.-+-+..|- ..+....++.. .+.+ ..+. T Consensus 223 ~~~g~vPvv~~~-----n-n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~---lvl~g~~~~~~--~~~~-~~~~ 290 (470) T protein:vir:10 223 HNFGRVPFIEFS-----K-NKYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVI---LVLTNYGGADL--HQFM-NDLR 290 (470) T ss_pred cCCCeeeEEEee-----c-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcc---eeeecCCcccc--chhh-hhhh Confidence 0000111111 1 135677777655555444332221 11122222222 22222111100 1111 1112 Q ss_pred HhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC-CCCChH-HHHHHHHHHHHHhcCCCeeeccC Q lcl|Aclame:pro 273 QYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG-SKVDLA-EDVEYMLNRLISALKVPKAFIGY 350 (533) Q Consensus 273 ~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG-~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~ 350 (533) +++- .+++-.+.+.+..++.|-- .+.... .-++-+.+.+|+-..+|-. . T Consensus 291 ~~~~--------------------------i~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~L~~~I~~~s~~p~~--~- 341 (470) T protein:vir:10 291 KYKS--------------------------IKINNTGNGDNSGVDKLQIDIPVEARDDALKITRKNIFLFGQGIDP--A- 341 (470) T ss_pred hcCe--------------------------EeccCCCCCcCceeEEEeecCChHHHHHHHHHHHHHHHHHhCCCCC--C- Confidence 2111 1222222233344444432 244322 3367788999999999953 3 Q ss_pred CCCccchhhhhHHHHHHH---HHHHHHHHHHHHHHhhhh--hhc--cCCC--ccceeEEecCCcHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 351 EGDVNAKNTLATQDIKFN---NTIKRIQGFFVEELERMV--RMN--KEFA--DQDFRLVMNRSNSIVEGERFAVIEQRIG 421 (533) Q Consensus 351 ~~~~gr~~eI~rde~kF~---kfI~rLr~~F~~~l~~qL--ilk--~i~t--~eew~~~f~~dn~f~E~ke~ei~~~R~~ 421 (533) +.++|..|..+..- ++. .-+.+.++.|...|+..+ |+. ++.. ..+.++.|.+.---.+...+ + T Consensus 342 ~~~~gn~Sg~Alk~-~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~l~~~~~d~~~i~i~f~~~~p~d~~e~~-------~ 413 (470) T protein:vir:10 342 NFESSNASGVAIKM-LYSHLELKAAKTQTYFEHAINELVRAIMRYLNFSDADKRHISQHWTRTKVEDSLTKA-------Q 413 (470) T ss_pred ccccccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccceeeEEeccCCCCCHHHHH-------H Confidence 33456655555422 222 245566666766655532 221 2221 22335777644433333333 3 Q ss_pred HHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCc Q lcl|Aclame:pro 422 IAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGE 501 (533) Q Consensus 422 ~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (533) ++..+...+|+.++.+..-..+| -.++-++|++|..+.....+++ .+. ...|. +++ T Consensus 414 ~~~~~~g~iS~et~l~~~p~v~D-~~~E~eri~~E~~e~~~~~~~~-------------~~~---------~~~~~-dde 469 (470) T protein:vir:10 414 IVSTVANYSSKEAVAKANPIVDD-WQQELKDLAKDKEENDPYSNQA-------------DEL---------NGKGV-NDE 469 (470) T ss_pred HHHHHhccCcHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHhhccc-------------ccc---------CCCCC-CCC Confidence 44445567999998876544443 3334455665543211110000 000 00011 111 Q ss_pred c Q lcl|Aclame:pro 502 E 502 (533) Q Consensus 502 ~ 502 (533) + T Consensus 470 ~ 470 (470) T protein:vir:10 470 Q 470 (470) T ss_pred C Confidence 1 No 150 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=97.82 E-value=1.7e-05 Score=46.75 Aligned_cols=359 Identities=15% Similarity=0.088 Sum_probs=155.5 Q ss_pred HHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCC Q lcl|Aclame:pro 17 TNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNE 96 (533) Q Consensus 17 ~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~ 96 (533) =.+-.++.||+... .+.+ -...++ .++.. ...+++-|.+||+.|++.+=.+.. T Consensus 1 Mg~f~~~~~~~~~~-------~~~~--~~~~~~----------~~~~~--------~~~~~~~v~~~i~~Ia~~iA~l~~ 53 (378) T protein:vir:16 1 MNLFGKVVSFSRGK-------LNND--TQRVTA----------WQNEA--------VEYTSAFVTNIHNKIANEITKVEF 53 (378) T ss_pred Cccchhhhhhhccc-------ccCC--cceeee----------cccch--------hhHHHHHHHHHHHHHHhhhhhCce Confidence 11111122221111 0000 000000 11110 112345688999999977432222 Q ss_pred CCceeeeecccc--c-ccHHHHHHHHHHhhh--------HHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCccee Q lcl|Aclame:pro 97 NGNIVDVVTKDI--E-LAKAILSYLDYVINI--------EKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIF 165 (533) Q Consensus 97 ~~~~v~v~l~~~--e-~s~si~~~i~~ll~f--------~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~i 165 (533) .. +...-.+. + ...-+...+.++|+. ....+..+..++..|+.|..++.|...+ ++.++-|.. T Consensus 54 ~~--~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~g---~~~~l~~~~- 127 (378) T protein:vir:16 54 NH--VKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTG---ELLDLLFAD- 127 (378) T ss_pred eE--EEEcccccccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCc---eEEEEEecC- Confidence 10 00000000 0 000011234555543 4677788889999999999888764322 233322211 Q ss_pred eEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 166 SKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRS 245 (533) Q Consensus 166 k~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RA 245 (533) ....+++++|+|+-.. +. +..|+|.|+.|++.++. ++ .-+ T Consensus 128 --------------------------~~~~~~~~diih~r~~-~~--~~~~~s~l~~~~~~i~~------~~-----~~~ 167 (378) T protein:vir:16 128 --------------------------DKKEYKPEELVRLTSP-FY--INEDTSILDNALASIQT------KL-----EQG 167 (378) T ss_pred --------------------------CeeEecccceEEecCc-cC--ccchhHHHHHHHHHHHH------HH-----hcC Confidence 1234567899999742 22 23577888887765432 11 112 Q ss_pred ccceeeecCC-CCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC-C Q lcl|Aclame:pro 246 VDRRVFYVDV-GNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-K 323 (533) Q Consensus 246 PeRr~fyidv-Gnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-n 323 (533) --+ .++.+ +.+...++.+..+.+...|++..-.+.+.| + +. + ..|.+++.|.-. . T Consensus 168 ~~~--g~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~-~---------~v-l----------~~g~~~~~l~~~~~ 224 (378) T protein:vir:16 168 KLR--GLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNG-L---------TP-V----------DNKTEIVELKKDYS 224 (378) T ss_pred ccc--eeeEeCCcCCHHHHHHHHHHHHHHHHHhhccccccc-c---------eE-c----------CCCceEEEccCChh Confidence 112 23333 345555666666666666654333333222 1 11 1 134566655432 2 Q ss_pred CChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhcc-----CCCccce Q lcl|Aclame:pro 324 VDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNK-----EFADQDF 397 (533) Q Consensus 324 lg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~-----i~t~eew 397 (533) .-++...+|.++.+.+++|||.+.|.. ..++ .+-+-|..+ |.-+-+++.+.|...|+... ....-.. T Consensus 225 ~~~~~~~~~~~~~Ia~~fgVPp~~l~g-----~~~e--~~~~~f~~~tl~P~~~~ie~~l~~kLl~~~e~~~~~~~~~~~ 297 (378) T protein:vir:16 225 VLNKDEIDLIKSELLTGYFMNENILLG-----TASQ--EQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYE 297 (378) T ss_pred hhhHHHHHHHHHHHHHHhCCCHHHhcC-----CchH--HHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhccccc Confidence 335677899999999999999999952 1122 222335543 55566667777877776432 1111122 Q ss_pred eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhc Q lcl|Aclame:pro 398 RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFL 477 (533) Q Consensus 398 ~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~ 477 (533) ++.|.-+.. ... -+..|.+.+..+ .+..-||..|.-. .++..++ ++-|+-..+ T Consensus 298 ~~~f~~~~l----~~~-d~~~~~~~~~~~----------~~~G~~T~NE~R~-----~~g~~p~---~ggD~~~~~---- 350 (378) T protein:vir:16 298 RIIVDNQLF----KFA-TLKELIDLYHEN----------INGPIFTQNQLLV-----KMGEQPI---EGGDVYIAN---- 350 (378) T ss_pred ceeeccchh----hhc-CHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCC---CCCCeEeec---- Confidence 334432222 211 123455544432 1334566533321 1222222 121111111 Q ss_pred CccCCcccccCCCcccccCCCCCccCCCccCcC Q lcl|Aclame:pro 478 GERGSPIESPRGRTEFDFGTEGGEELGGELNLG 510 (533) Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (533) .-..|+..+... .+...++..|+|-|=+ T Consensus 351 -~n~~~~~~~~~~----~~~~~~~~~~~e~~ne 378 (378) T protein:vir:16 351 -LNAVAVKNLSDL----QGSRKDVTSTDETNNQ 378 (378) T ss_pred -cccccccchhhh----cCccCCCCCCCCCCCC Confidence 111111111100 0111111112221111 No 151 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=97.80 E-value=1.8e-05 Score=46.61 Aligned_cols=359 Identities=12% Similarity=0.093 Sum_probs=152.0 Q ss_pred hcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCc Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGN 99 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~ 99 (533) |. +|+.-.+++.. +... . .... +..+.. +.+.+.+-|.+||+.|++.+-.... T Consensus 1 Mg-~f~~l~~~~~~----~~~~--~-------~~~~-~~~~~~---------~~~l~~~~v~~~i~~Ia~~ia~~p~--- 53 (376) T protein:vir:78 1 MG-FFSELFKRNKE----IEWM--W-------DLDF-LEDKTT---------KVYLKKMALNTCVKHIARTIAKSDF--- 53 (376) T ss_pred Cc-hhhhhhccCCc----cccc--c-------chhh-ccccch---------hhhhhhHHHHHHHHHHHHhhcccce--- Confidence 32 22221222111 0000 0 0000 111111 1233457899999999987543222 Q ss_pred eeeeecccccccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeec Q lcl|Aclame:pro 100 IVDVVTKDIELAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNP 171 (533) Q Consensus 100 ~v~v~l~~~e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~ 171 (533) .+--++. .+...+..+| .-....+..+..++..|+.|..+..+. .+-+.++..++|..+...+ T Consensus 54 --~~~~~~~----~~~~~l~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~~-~~~~~~~~~~~~~~~~~~~-- 124 (376) T protein:vir:78 54 --RLKNGET----SVRDKLYYKLNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDTD-DFLIADSYVRKEFAFFPDV-- 124 (376) T ss_pred --eeccccc----cccchHHHHHhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeCC-Ceeeccceeecccceeeee-- Confidence 1111111 1112233333 334566778888999999988766543 3446677777776553322 Q ss_pred cCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceee Q lcl|Aclame:pro 172 ETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVF 251 (533) Q Consensus 172 ~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~f 251 (533) ++.+.-. .......+++++|+|+..+... |.+++..++..+..+ +..++-.+.. -.-.|... T Consensus 125 -----~~~~~~~-----~~~~~~~~~~~evih~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~ 186 (376) T protein:vir:78 125 -----FEGVTVK-----DYRYNRNFSMDDVIFLEYGNER-----LSAFTDGMFEDYGEL--FGKMIRAQMR-NFQIRGAV 186 (376) T ss_pred -----eeeeeee-----cceeeeeeccccEEEeccCCCC-----chhhhhHHHHHHHHH--HHHHHHHHHh-cCCCceeE Confidence 1211110 0111234678999999864433 223333322222211 1112222222 22346667 Q ss_pred ecCCCCCchhhHHHHHHHHHHH-hhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC----CCC- Q lcl|Aclame:pro 252 YVDVGNVPPDKINEYLTNIAMQ-YKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS----KVD- 325 (533) Q Consensus 252 yidvGnlp~~kAeqy~~~im~~-~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~----nlg- 325 (533) .+..+.....++.+-+++..++ |+ -..+..+.|. |--+ |++++-|.=. +.. T Consensus 187 ~~~~~~~~~~e~~~~~~~~~~~~~~---g~~~~~~~v~-----------------~l~~---g~~~~~l~~~~~~~~~~~ 243 (376) T protein:vir:78 187 NFKMAGVADKDKQTKLQEYIDKVYA---SFNNNEIAIV-----------------PQLE---GFNYEEFGTTSVNNSQSF 243 (376) T ss_pred EEccCCCCCHHHHHHHHHHHHHHhc---cccccCcceE-----------------EcCC---CceEEeeccCccccchhH Confidence 7777643344444444444433 22 0111111111 1111 2333333211 111 Q ss_pred -h-HHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCccceeEEec Q lcl|Aclame:pro 326 -L-AEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFRLVMN 402 (533) Q Consensus 326 -~-i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~eew~~~f~ 402 (533) | ++-.++..+.+.+++|||...|+. ++ +.+.-..+.|..+ |.-+-.++.+.|.+.|+ ++.+|.+.|. T Consensus 244 ~q~~e~~~~~~~~Ia~~fgVPp~~l~~--~~---s~~e~~~~~f~~~~l~P~~~~ie~~l~~kll-----~~~~~~~~~~ 313 (376) T protein:vir:78 244 DEVKKLRKEMIDYVASILGIPSSLLHG--DM---ADLSNNMKAYMEYCIDPLTKKLEDELNAKLF-----TFSEFLAGEH 313 (376) T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHhCC--CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-----Ccccceeccc Confidence 1 233466678899999999999963 22 2333344456554 66677778888877775 4456654443 Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCC Q lcl|Aclame:pro 403 RSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGS 482 (533) Q Consensus 403 ~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (533) -+. +-. .-+.+|.+++..+ -+..-||-.+.- +.++-.++. .++.|+ T Consensus 314 ~~~----ll~-~d~~~~~~~~~~~----------~~~G~~t~NE~R-----~~lg~~p~~-~g~~d~------------- 359 (376) T protein:vir:78 314 IKI----IHK-KDIIENAEAVDKL----------VASGSFNRNEVR-----ELLGAERVD-NPELDK------------- 359 (376) T ss_pred chh----hcc-cCHHHHHHHHHHH----------HhCCCcCHHHHH-----HHhCCCCCC-CCCCce------------- Confidence 221 111 1122344443332 233345643321 111221111 111111 Q ss_pred cccccCCCcccccCCCCCccCC Q lcl|Aclame:pro 483 PIESPRGRTEFDFGTEGGEELG 504 (533) Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~ 504 (533) .-.|.+-.+.+.| ++.| T Consensus 360 -~~~~~n~~~~~~~----~e~g 376 (376) T protein:vir:78 360 -YLITKNYQSADEG----GEDG 376 (376) T ss_pred -eeeccCceehhcc----ccCC Confidence 1111111011111 1111 No 152 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=97.78 E-value=2e-05 Score=46.34 Aligned_cols=379 Identities=10% Similarity=0.042 Sum_probs=171.0 Q ss_pred ccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhh Q lcl|Aclame:pro 58 GIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIK 137 (533) Q Consensus 58 g~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyv 137 (533) -.-++..+-++.=+++. ...-+.-+|+.+++-+.+-+ +...+.+..+. ...+...=+|+.+..+.++..++ T Consensus 1 ~l~~~~~~~~~~~~~~~-v~n~~~~ivd~~~~~l~~~g-------f~~~d~~~~~~-~~~i~~~N~~d~~~~~~~~~a~i 71 (434) T protein:vir:98 1 MLPKNAEQAFLDFQRKA-RTNFCGLIANASVHRLLALG-------VTGPDGEPDTR-ASRWWQANRLDSRQKLVWRMAMA 71 (434) T ss_pred CCCCCccHHHHHhhhhh-hccchHHHHHHHHhhhccCc-------eecCCCchHHH-HHHHHHhcChhHHHHHHHHHHhh Confidence 01223222222222222 23578889999888665322 22334333322 33444445789999999999999 Q ss_pred cCceeEEEeecCCC-----CCeeeeEEcCcceeeEEeeccCcE-----E-------------EEEeccccee-----ccc Q lcl|Aclame:pro 138 YGDMFLHILEKGSD-----GTIEKFQVVSPYIFSKRYNPETDT-----W-------------YYVITDVYRN-----VVS 189 (533) Q Consensus 138 DGr~~~~kiid~~k-----~gI~elr~ldP~~ik~v~d~~g~~-----e-------------~y~y~~~~~~-----~~~ 189 (533) +|+.|+....++.. .+-..++.+||+.+-+++|...++ . .|.|+..+.+ ... T Consensus 72 ~G~ay~~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (434) T protein:vir:98 72 QSAGYMLVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETGEPLVGLKVWHNDIDGFGYARVFFDDTSFPYRTRERTGA 151 (434) T ss_pred cCceEEEEecCCCcccccCCceeEEEEeccceeEEEEeCCCCceEEEEEEEEeccCCceEEEEEEeCcEEEEEEeecccc Confidence 99999988765311 122337789999998888865432 1 1111111110 000 Q ss_pred -C---------------CcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHH-HHHHHHHHHHHHhccccceeee Q lcl|Aclame:pro 190 -G---------------YFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQL-RLMEDALMLYRVVRSVDRRVFY 252 (533) Q Consensus 190 -~---------------~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqL-rm~EdalVIyRi~RAPeRr~fy 252 (533) . ...+.+..=.+++|..+... ...|.|-++..+....-+ +.+-+.++.-+..-.|.|-+ T Consensus 152 ~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~--~~~g~sd~e~vi~liDa~~~~~s~~~~~~~~~a~p~~~i-- 227 (434) T protein:vir:98 152 RLPWGPDSWVYTGTADSGDVHDLGGMQLVEFARMPDL--GEDPEPEFAGVLDIQDRVNLGILNRMAASRFSGFRQKWI-- 227 (434) T ss_pred ccccccccceecccccccccCCCCccceEEeccCCCc--CcCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcchhhhh-- Confidence 0 00011222235566544221 124555444443333322 22333444444443333322 Q ss_pred cCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChH-HHHH Q lcl|Aclame:pro 253 VDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLA-EDVE 331 (533) Q Consensus 253 idvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i-~Dv~ 331 (533) -..+++... |...+.+...+. +..-....|+.- +..+++..++++.++.. +-++ T Consensus 228 -~G~~~~~~~------------------~~~~~~~~~~~~---~~~~~~~i~~~~---~~~~~~~q~~~~~~~~~~~~l~ 282 (434) T protein:vir:98 228 -KGHKFAKRT------------------DPATGMTVVDQP---FVPSPSAVWASE---GENTQFGQLDATDLSGFLKEHA 282 (434) T ss_pred -cCCCccccc------------------ccccccchhhhh---hhccccccccCC---CCCceEEEecCcchHHHHHHHH Confidence 211221100 111111100000 011111234432 23456777777666544 3367 Q ss_pred HHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhh----hhccCCCccc--eeEEecCCc Q lcl|Aclame:pro 332 YMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMV----RMNKEFADQD--FRLVMNRSN 405 (533) Q Consensus 332 Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qL----ilk~i~t~ee--w~~~f~~dn 405 (533) -.-..+...-++|...|+...+=.-+..+--.+.....-+.+.|+.|..-|++-+ .+.|+ +.+. .++.|.... T Consensus 283 ~~i~~~~~~~~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~g~-~~~~~~~~v~w~~~~ 361 (434) T protein:vir:98 283 SDVRDMLTISQTPTYLYATDLVNISADTIGALDILHVAKVREHIASFSEGLESVLALAAAQAGV-PEDYTEAEVRWANPA 361 (434) T ss_pred HHHHHHhcccCCCHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChhheeeeEEecCCC Confidence 7788888999999988874211111233334455566667777777776554332 23342 3332 356676544 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHhcCChhhhHHHH-HHhhhcccCCCCCcccccccchhhhcCccCCc Q lcl|Aclame:pro 406 SIVEGERFAVIEQRIGIAERLKGW-VREDWIYSNILQIPYDLKPQEE-VAEAAGGGGLFDTGGFGEETTPADFLGERGSP 483 (533) Q Consensus 406 ~f~E~ke~ei~~~R~~~~~~~~py-vgk~~i~k~il~~tde~~~q~~-~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (533) .=. +.+..+++.++..- ++...++.. |.+++++++.-+ ..+++.. ..+...+..++| T Consensus 362 ~~s-------~~~~ada~~kl~~~g~~~e~~~~~-lg~~~~e~~r~~~e~~~~~~-------------~~~~~~~~~~~~ 420 (434) T protein:vir:98 362 HVT-------MAVKADAATKLKSIGYPLDVIAEE-LDESPARVRRIVAGAASQAL-------------LAASLLPAPGAP 420 (434) T ss_pred CCC-------HHHHHHHHHHHHhcCCcHHHHHHh-CCCCHHHHHHHHHHHHHHHH-------------HHHhhhccCCCC Confidence 322 23344445555442 567777755 567876554311 1111111 001111111111 Q ss_pred ccccCCCcc-cccCCCC Q lcl|Aclame:pro 484 IESPRGRTE-FDFGTEG 499 (533) Q Consensus 484 ~~~~~~~~~-~~~~~~~ 499 (533) |.+... .+-+++| T Consensus 421 ---~~g~~~~~~~~~dg 434 (434) T protein:vir:98 421 ---SAGNVPDSGGAVDG 434 (434) T ss_pred ---CCCCCCcccCCCCC Confidence 111100 1111111 No 153 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=97.77 E-value=2.1e-05 Score=46.24 Aligned_cols=408 Identities=8% Similarity=0.016 Sum_probs=181.2 Q ss_pred hccccccc--CcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcCh-hH---------------- Q lcl|Aclame:pro 20 LSPMYGMG--APHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDP-LI---------------- 80 (533) Q Consensus 20 ~~~~~s~~--~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~P-EV---------------- 80 (533) |+=...+. ..+.-. ...+..+.....-..-++ ........|+.+|+|+.-+| .+ T Consensus 1 m~~~~~ik~~~~~~~~-~~~~~~~~~~i~d~~~i~------~~~~~~~~i~~~~~~Y~g~~~~l~~~~~~~~~~~~~~~s 73 (505) T protein:vir:79 1 MAFWDTLKNLFRKGSA-AVGMTKSLGQIIDDPRIN------LPADEVERIARDKRYYMDDFKQVTHKNSYGDTQKHELQS 73 (505) T ss_pred CchHHHHHHHHHHhhh-hhcchhhhhhhhcccCCC------CCHHHHHHHHHHHHHhcCCCccccccccCCCccccceee Confidence 21111110 111100 011111100000000000 00112344666777664322 22 Q ss_pred ----HHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeee Q lcl|Aclame:pro 81 ----STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEK 156 (533) Q Consensus 81 ----~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~e 156 (533) ..++++.++-++ + .++.+.+++. -.++-.+.+++--+|...+.+.+..+...|..+|+..+|+ +.| . T Consensus 74 lnl~~~i~~~~A~ll~----~-e~~~i~~~d~-~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~~~k~~~D~--~~~-~ 144 (505) T protein:vir:79 74 VNVTKLASAKLASLIF----N-EQCQVTVSDE-TANDFLDDVFQQNDFYTTFEEKLEEWIALGSGCVRPYVDS--GKI-K 144 (505) T ss_pred cchHHHHHHHHHhhhc----C-CCceeecCCh-HHHHHHHHHHHhccHHHHHHHHHHHHhhcCCeEEEEEEeC--Cce-E Confidence 333444443322 2 2444555441 1122222333333599999999999999999999999974 334 5 Q ss_pred eEEcCcceeeEEeeccCcE-----------------------EEEEecc--cce----e--cccC--Cccc--------- Q lcl|Aclame:pro 157 FQVVSPYIFSKRYNPETDT-----------------------WYYVITD--VYR----N--VVSG--YFNE--------- 194 (533) Q Consensus 157 lr~ldP~~ik~v~d~~g~~-----------------------e~y~y~~--~~~----~--~~~~--~~~~--------- 194 (533) +.+++|.++-+++-..++. |+|.++. +.. + ..+. +... T Consensus 145 i~~v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~~ 224 (505) T protein:vir:79 145 LAWATADQVYPLQADTNQVNELAIASRTTEVENHRTIYYTLLEFHQWDHGDYVITNELYRSEAAETVGINVPLNSLEQYE 224 (505) T ss_pred EEEEcCCeeEEEEEcCCCeEEEEEEEEEEEecCCcceEEEEEEEEEecCceEEEEEEEEecCCCCccCcccchhhccccc Confidence 8889999887764222221 1111110 000 0 0000 0000 Q ss_pred c---------cCcccEEEEec---CcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhh Q lcl|Aclame:pro 195 D---------IPEEDVIHFSH---KIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDK 262 (533) Q Consensus 195 ~---------~~~~dvi~~~~---~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~k 262 (533) . ++.-.+++|.. +..+...|+|+|-+++|+.....|-..-+. +.|..|.=.+|+|. +-.=+++.. T Consensus 225 ~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~--~~~e~~~g~~~i~v-~~~~l~~~~ 301 (505) T protein:vir:79 225 GLEPQVKITGLKHPLFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQ--FVDEVKKGQRRLIV-PAEWLKTGS 301 (505) T ss_pred ccCcceeecCCCcceEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHH--HHHHHHhcccceee-chHHhcccC Confidence 0 11112334432 222223479999999988777666544443 34455555555555 211000000 Q ss_pred HHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCC-CCh-HHHHHHHHHHHHHh Q lcl|Aclame:pro 263 INEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSK-VDL-AEDVEYMLNRLISA 340 (533) Q Consensus 263 Aeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~n-lg~-i~Dv~Yf~~kLy~a 340 (533) .......... .-++|... +. +.++. -+++ +..|+++.+.- -.+ .+-+..+.+.+... T Consensus 302 ~~~~~~~~~~----~~~fd~~~------~~---y~~~~-------~~~~-~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~ 360 (505) T protein:vir:79 302 SYGGQASETH----PPMFDPDE------TV---YQAMY-------GDAS-EVGFHDATSPIRVADYQATMDFFLREFENQ 360 (505) T ss_pred CCCccccccc----ccCCCccc------ee---eeecc-------CCCC-CCceEEecccCCHHHHHHHHHHHHHHHHHH Confidence 0000000000 00111100 00 11111 0111 22467765542 222 34588888999999 Q ss_pred cCCCeeeccCCCCc-cchhhhhHHHHHHHHHHHHHHHHHHHHHh----hhhhhc---cC---------CCccceeEEecC Q lcl|Aclame:pro 341 LKVPKAFIGYEGDV-NAKNTLATQDIKFNNTIKRIQGFFVEELE----RMVRMN---KE---------FADQDFRLVMNR 403 (533) Q Consensus 341 L~VP~srl~~~~~~-gr~~eI~rde~kF~kfI~rLr~~F~~~l~----~qLilk---~i---------~t~eew~~~f~~ 403 (533) .|++.+-|+.+++. .-+++|.-....-..-+.+.|+.|...|+ .-|-+. ++ ....+.++.+.. T Consensus 361 ~g~s~~~~~~~~~~~~TAtei~s~~~~l~~t~~~~~~~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~f 440 (505) T protein:vir:79 361 TGLSQGTFTTSPSGIQTATEVVTNNSQTYQTRSSYITQVEKTIKALTYAILELASVPSFYADGQARWTGDVDSLDITINF 440 (505) T ss_pred hCCChhhcCCCccccchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCceeEEEEe Confidence 99999999976543 33566655454445555666655554443 222111 11 112233444443 Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhH-HHHHHhhhcccCCCCCcccccc Q lcl|Aclame:pro 404 SNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKP-QEEVAEAAGGGGLFDTGGFGEE 470 (533) Q Consensus 404 dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~-q~~~i~~E~~~~~~~~~~~~~~ 470 (533) +.....-++.++- ..+++++. ..+++..+.++...+|||+.+ +-+.|++|.....+...+++++ T Consensus 441 ~d~i~~d~~~~~~-~~~~~v~~--Gi~s~e~~l~~~~~~~eeea~~el~ri~~E~~~~~p~~~~~gg~ 505 (505) T protein:vir:79 441 NDGVFVDQESKRA-ADLQAVQA--QVMPKKQFLMRNYGLDEEEADEWLAQIDAENSTAEPEFNQFGGD 505 (505) T ss_pred CCCCCCCHHHHHH-HHHHHHHc--CCCCHHHHHHhcCCCChHHHHHHHHHHHHhccccCCCchhccCC Confidence 3333333333322 22233222 356776544556779987754 4577888866544444444444 No 154 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=97.73 E-value=2.4e-05 Score=45.87 Aligned_cols=429 Identities=12% Similarity=0.040 Sum_probs=193.6 Q ss_pred hccccccc-Ccc----cCCCCcc--------c---CCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHH Q lcl|Aclame:pro 20 LSPMYGMG-APH----GAGGSSM--------I---PINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) Q Consensus 20 ~~~~~s~~-~p~----~~~gas~--------i---~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~A 83 (533) |+++..-. -|- ....++. . |.+.-.|.-.+.+-...-+|+.....+| |+.|...|++|.++ T Consensus 1 m~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iL~~a~~gd~~~~~~L---~~dm~~~D~hi~s~ 77 (512) T protein:vir:19 1 MGRILDISGQPFDFDDEMQSRSDELAMVMKRTQEHPSSGVTPNRAAQMLRDAERGDLTAQADL---AFDMEEKDTHLFSE 77 (512) T ss_pred CcceeCCCCCccccccccccccchhcccchhhccccccCCCHHHHHHHHHHhhCCCHHHHHHH---HHHHHhhChHHHHH Confidence 55555432 111 1000000 0 0000000000111111122344333334 55676679999999 Q ss_pred HHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh----hhHHHHHHHHHHHhhcCceeEEEeecC--CCCCeeee Q lcl|Aclame:pro 84 LDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI----NIEKNAYPIIRNMIKYGDMFLHILEKG--SDGTIEKF 157 (533) Q Consensus 84 Id~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll----~f~~~~~e~~R~wyvDGr~~~~kiid~--~k~gI~el 157 (533) ++....-+...+..-.|. -+...-.+++.+.+.+.| +|+.-+.++.. -+-.|-.++.++-.. ..-.+.++ T Consensus 78 l~~Rk~av~~~~w~I~p~---~~~~~~~~~~a~~v~~~l~~~~~f~~~~~~lld-A~~~G~s~~Ei~w~~~~g~~~~~~~ 153 (512) T protein:vir:19 78 LSKRRLAIQALEWRIAPA---RDASAQEKKDADMLNEYLHDAAWFEDALFDAGD-AILKGYSMQEIEWGWLGKMRVPVAL 153 (512) T ss_pred HHHHHHHHhCCCceEecC---CCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-hhhhcceeeeeEeeeeCCceeeeee Confidence 999987665443322111 111122233333444433 57776666664 566888888887653 33456678 Q ss_pred EEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 158 QVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDAL 237 (533) Q Consensus 158 r~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Edal 237 (533) ...||+.+++ +..+.-. ..+. ..+..+..++|...+++.|.--++. ++|.|.|..|.-+|-..+...... T Consensus 154 ~~r~~~~f~~--~~~~~~~-lr~~------~~~~~G~~l~~~k~i~~~~~~~~g~-p~g~gLlr~~~w~~~fK~~~~~~w 223 (512) T protein:vir:19 154 HHRDPALFCA--NPDNLNE-LRLR------DASYHGLELQPFGWFMHRAKSRTGY-VGTNGLVRTLIWPFIFKNYSVRDF 223 (512) T ss_pred eeecccccee--ccCCCcE-EEec------CCCCCceeecCCceEEEeccCCCCC-cccccHHHHHHHHHHHHHHHHHHH Confidence 8888886643 3333211 1111 1234456788899999999777765 799999999999999999998887 Q ss_pred HHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceee Q lcl|Aclame:pro 238 MLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEID 317 (533) Q Consensus 238 VIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~ 317 (533) +.+=-.-.-.=|+..++.|.-.+.| +-|.+.+....+ | .|-| + .+|++|+ T Consensus 224 ~~f~E~yG~P~~igky~~~a~~~ek--~~L~~al~~~~~----~--a~~i-----------------i-----P~~~~ie 273 (512) T protein:vir:19 224 AEFLEIYGLPMRVGKYPTGSTNREK--ATLMQAVMDIGR----R--AGGI-----------------I-----PMGMTLD 273 (512) T ss_pred HHHHHHcCCCeeEEecCCCCCHHHH--HHHHHHHHHHhh----C--cEEE-----------------e-----cCCceEE Confidence 7776555555667777777432222 122222222211 1 2221 1 1357887 Q ss_pred ecCCCCCC---hHHHHHHHHHHHHHhcCCCeeeccCCC--CccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh----- Q lcl|Aclame:pro 318 ILQGSKVD---LAEDVEYMLNRLISALKVPKAFIGYEG--DVNAKNTLATQDIKFNNTIKRIQGFFVEELERMVR----- 387 (533) Q Consensus 318 TLpG~nlg---~i~Dv~Yf~~kLy~aL~VP~srl~~~~--~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qLi----- 387 (533) .+..++-+ -..=++|..+++-+++-- .-|..+. +.+++..-.-.++ +..-++...+.+.+.|.+||| T Consensus 274 ~~ea~~~~~~~y~~li~~~d~~Isk~iLG--qtlTs~~g~~Gs~a~~~vh~ev-~~di~~aDa~~i~~tln~~li~~l~~ 350 (512) T protein:vir:19 274 FQSAADGQSDPFMAMIGWAEKAISKAILG--GTLTTEAGDKGARSLGEVHDEV-RREIRNADVGQLARSINRDLIYPLLA 350 (512) T ss_pred EeecCCCCHHHHHHHHHHHHHHHHHHHhh--hhhcccccccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 77533211 123399999999888421 1223232 1223322222233 455555555666666666654 Q ss_pred hccCCCccce---eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCC Q lcl|Aclame:pro 388 MNKEFADQDF---RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDT 464 (533) Q Consensus 388 lk~i~t~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~ 464 (533) ++.......+ ++.|... |-.+.+...+++..+. +--=|+++|+++++.- . . T Consensus 351 ~N~~~~~~~~~~p~~~f~~~----e~eDl~~~a~~~~~l~-~G~~i~~~~i~e~~Gi-p--------------------~ 404 (512) T protein:vir:19 351 LNSDSTIDINRLPGIVFDTS----EAGDITALSDAIPKLA-AGMRIPVSWIQEKLHI-P--------------------Q 404 (512) T ss_pred hCCCCCCCccccceEEecCC----ChhhHHHHHHHHHHHh-cCCCCCHHHHHHHhCC-C--------------------C Confidence 4433222221 3444333 3344455555555553 2112677888877642 1 1 Q ss_pred cccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCccc--CC-------CCCCCC Q lcl|Aclame:pro 465 GGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEE--EL-------PFPEEE 533 (533) Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~-------~~~~~~ 533 (533) ++.+++... ..|...+..+ ...........+ ....+.......++-...... ++ .-++|- T Consensus 405 ~~~~e~~~~-------~~~~~~~~~~-~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~i~~~~~~~s~ee~ 473 (512) T protein:vir:19 405 PVGDEAVFT-------IQPVVPDNGS-QKEAALSAEDIP-QEDDIDRMGVSPEDWQRSVDPLLKPVIFSVLKDGPEAA 473 (512) T ss_pred CCCcccccc-------CCCccccccc-cccccccccCCC-chhhHhHHhhhHHHHHHHHHHHHHHHHHHHHhCCHHHH Confidence 111111110 0010000000 000000000000 000000000000000000000 00 000000 No 155 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=97.65 E-value=3.2e-05 Score=45.22 Aligned_cols=399 Identities=12% Similarity=0.007 Sum_probs=160.6 Q ss_pred hccc-ccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhh----------------------- Q lcl|Aclame:pro 20 LSPM-YGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDY----------------------- 75 (533) Q Consensus 20 ~~~~-~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~----------------------- 75 (533) |..+ .....|.+..--..+... ......-+.. ....-..-+.+|+.+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~------~i~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~ 73 (478) T protein:vir:10 1 MISINWPWDKPYHEQVVEQIKPK-YETQEEMILR------LVREHKENIDNITMGERYYNHHPDILDAPFKRDVNGDYDE 73 (478) T ss_pred CccccccCCchhhhHHHHHhhhc-cCChHHHHHH------HHHHHHHHHHHHHHHHHHhcccccccccchhhhccccccc Confidence 3222 333333322111111111 0000000000 00000011112221111 Q ss_pred -------cChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeec Q lcl|Aclame:pro 76 -------TDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEK 148 (533) Q Consensus 76 -------~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid 148 (533) .++-+..+|+..+...+ +.|+.+..++.+..+.+.+.+. =+|+....++++.+.+.|+.|.+.-.| T Consensus 74 ~~~~~ki~~n~~k~ivd~~~~yl~-----g~p~~~~~~~~~~~~~l~~~~~--n~~~~~~~~~~~~~~~~G~~~~~v~~d 146 (478) T protein:vir:10 74 TKPDWRMYTNYHQNLVDQKVAYAV-----ANPVTFGVDNDKALKQIQHTLN--HKWDDKLVDILTAASNKGIEWVQPYVD 146 (478) T ss_pred ccccceeccchHHHHHHHHhhhhc-----ccCceeecCChHHHHHHHHHHh--ccHHHHHHHHHHHHhhCCeEEEEEEec Confidence 12333334444443332 4566666655433333332222 268899999999999999999988776 Q ss_pred CCCCCeeeeEEcCcceeeEEeecc--CcEEEEE-------------ecccc--eecccCCc------------------- Q lcl|Aclame:pro 149 GSDGTIEKFQVVSPYIFSKRYNPE--TDTWYYV-------------ITDVY--RNVVSGYF------------------- 192 (533) Q Consensus 149 ~~k~gI~elr~ldP~~ik~v~d~~--g~~e~y~-------------y~~~~--~~~~~~~~------------------- 192 (533) . +|-..+..++|+.+.++++.. ++..+++ |+... .+...++. T Consensus 147 ~--~~~~~~~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (478) T protein:vir:10 147 E--EGEFKTFRVPAEQAVPIWTNKERDELQAFIRVYELDGAERVEYWTKDDVTFYELKEGQLIPDFYRSEDHIQPHYYQG 224 (478) T ss_pred C--CCceEEEEEcccceEEEEcCCCCCceEEEEEEEeeeCceEEEEEeCCcEEEEEecCCeeeccccccccccccceecc Confidence 3 455579999999999988642 3322222 11110 01000000 Q ss_pred --ccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHH-HHHHHHHhccccceeeecCCCCCchhhHHHHHHH Q lcl|Aclame:pro 193 --NEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMED-ALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTN 269 (533) Q Consensus 193 --~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed-alVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~ 269 (533) .+.+..=.+++|.- .+.|.|-|+..+....-|-.+-- ..-.-+-.+.|-+-+.-.+..+.. +.... T Consensus 225 ~~~~~~g~vPvv~~~n------~~~g~sd~e~v~~liDa~~~~~S~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~ 293 (478) T protein:vir:10 225 NKLMSWGRVPFIPFKN------NPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEGEDMK-----DFMHN 293 (478) T ss_pred cccccCCcceEEEecc------CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCCccccc-----chhhh Confidence 00000001222221 13566766664444443332221 111223333432222111111100 00000 Q ss_pred HHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC-CCCChH-HHHHHHHHHHHHhcCCCeee Q lcl|Aclame:pro 270 IAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG-SKVDLA-EDVEYMLNRLISALKVPKAF 347 (533) Q Consensus 270 im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG-~nlg~i-~Dv~Yf~~kLy~aL~VP~sr 347 (533) +..++ + +|++.-+ |.+++.|-. .+...+ .-++-+.+.+|...++|--- T Consensus 294 -~~~~~-----------------------~---~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~ 343 (478) T protein:vir:10 294 -LKYYK-----------------------A---ISVAGES---GSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQ 343 (478) T ss_pred -hhhCc-----------------------e---eEecCCC---CCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCcCcC Confidence 00100 0 1222212 223344422 244333 33788899999999999532 Q ss_pred ccCCCCccchhhhhH--HHHHHHHHHHHHHHHHHHHHhhh--hhhccC---CCccceeEEecCCcHHHHHHHHHHHHHHH Q lcl|Aclame:pro 348 IGYEGDVNAKNTLAT--QDIKFNNTIKRIQGFFVEELERM--VRMNKE---FADQDFRLVMNRSNSIVEGERFAVIEQRI 420 (533) Q Consensus 348 l~~~~~~gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~q--Lilk~i---~t~eew~~~f~~dn~f~E~ke~ei~~~R~ 420 (533) . +...|+.|..+. .......-+.+.++.|...|++. ||++.. ....+.++.|.+.---.+... + T Consensus 344 ~--~~~~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~d~~~i~i~f~~~~p~~~~e~-------~ 414 (478) T protein:vir:10 344 Q--DKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLDVRVQDIEITFNFNVMVNELEN-------S 414 (478) T ss_pred c--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccceEEeCCCCCCCHHHH-------H Confidence 2 121234343333 12222334455556677666653 343322 222344677865443333333 3 Q ss_pred HHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCC Q lcl|Aclame:pro 421 GIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTE 498 (533) Q Consensus 421 ~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (533) ++++.+..-+|+.++.+.+-..+| -.++-+.|++|..+... ..+....+...+..+.+.+-+.+ T Consensus 415 ~~~~~~~g~iS~et~i~~~~~v~d-~~~E~~ri~~E~~~~~~-------------~~~~~~~~~~d~~~~~~~d~~~e 478 (478) T protein:vir:10 415 QIAMNSTGLLSKETILGNHSWVQD-PVAEMERIEQENIELNQ-------------QLPDIEEGLNDEQQRQSEDNQSE 478 (478) T ss_pred HHHHHHhCCCChHHHHHhCCCCCC-HHHHHHHHHHHHHHHHH-------------hccccCCCCcccccccCcCCCCC Confidence 344455567899988876554443 33444555555432111 01111111111111111111111 No 156 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=97.63 E-value=3.6e-05 Score=44.97 Aligned_cols=409 Identities=13% Similarity=0.040 Sum_probs=177.3 Q ss_pred ccCcccCC-----CCcccCCCCCccc-cchh-hcccccCccc--------cchHHHHHHHHHHhhcChhHHHHHHHhhce Q lcl|Aclame:pro 26 MGAPHGAG-----GSSMIPINMYHPF-ATAG-YASRFYGGIE--------FNRFFLYDMYDRMDYTDPLISTVLDIIADE 90 (533) Q Consensus 26 ~~~p~~~~-----gas~i~~~~~~~~-~~~~-~~~~~ygg~~--------~n~~~li~~YR~m~~~~PEV~~AId~Ivne 90 (533) |+-+++.- ++..+.+...... +... ...--|.|.. + .+..++-|+.|.. |++|.++++.+..- T Consensus 1 m~kk~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr-~~~~~~ly~~m~~-D~hi~s~l~~Rk~a 78 (448) T protein:vir:77 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQ-GKDGLLVYHKMLS-DGTVKNALNYIFGR 78 (448) T ss_pred CCCCCCCCcccCCcccccchhhhhhhccchhhhcccccccccccchhHhhc-cccchHHHHHHhh-ChHHHHHHHHHHHH Confidence 43333211 1111110000000 0000 0111111211 1 2345788999975 99999999999976 Q ss_pred eeecCCCCceeeeecccccccHHHHHHHHHH----------hhhHHHHHHHHHHHhhcCceeEEEeecCCCCC---eeee Q lcl|Aclame:pro 91 CTIPNENGNIVDVVTKDIELAKAILSYLDYV----------INIEKNAYPIIRNMIKYGDMFLHILEKGSDGT---IEKF 157 (533) Q Consensus 91 aiv~d~~~~~v~v~l~~~e~s~si~~~i~~l----------l~f~~~~~e~~R~wyvDGr~~~~kiid~~k~g---I~el 157 (533) +...+-.-.|-+ +..-..++.+.+.+. +.|+..+.++. .-+.+|-.+++++-+...+| +..| T Consensus 79 v~~~~w~v~p~~----~~~~d~~~ae~v~~~l~~~~~~~~~~~f~~~i~~~l-da~~~G~s~~Eivw~~~~dg~~~~~~l 153 (448) T protein:vir:77 79 IRSAKWYVEPAS----TDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYE-NAYIYGMAAGEIVLTLGADGKLILDKI 153 (448) T ss_pred HhcCCceEecCC----CCHHHHHHHHHHHHHhhchhhhhccCCHHHHHHHHH-HhhhhcceeEEEEEeecCCCceeeccc Confidence 554443322211 111122222333222 25666565554 56778888998887654444 3355 Q ss_pred EEcCcceee-EEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 158 QVVSPYIFS-KRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDA 236 (533) Q Consensus 158 r~ldP~~ik-~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Eda 236 (533) ...+|++++ +.++..+.-....-...............+|...++|+.+. -+++ ++|.|.|..|.-+|-..+..... T Consensus 154 ~~r~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~-~~g~-p~g~gLlr~~~w~~~fK~~~~~~ 231 (448) T protein:vir:77 154 VPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVNGLEIPIWKTVVFLHN-DDGS-FTGQSALRAAVPHWLAKRALILL 231 (448) T ss_pred cccCCCccceeeeecCCceEEEecCCcccccccCCCccccccceEEEEecC-CcCC-cccchHHHHHHHHHHHHHhhHHH Confidence 556676653 34455554333222221111122234456777888888664 3443 79999999999999998888887 Q ss_pred HHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCccee Q lcl|Aclame:pro 237 LMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEI 316 (533) Q Consensus 237 lVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi 316 (533) .+.+=-.-.-.=|+..++-|.-...+..+-+..++..++ -+...|-| + -.|++| T Consensus 232 w~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~----~g~~a~~i-----------------i-----P~g~~i 285 (448) T protein:vir:77 232 INHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFV----QKPRHGII-----------------L-----PDDWKF 285 (448) T ss_pred HHHHHHHcCCceeEEecCCCCCCCHHHHHHHHHHHHHHh----cCCceEEE-----------------e-----cCCceE Confidence 777654434444455555553222222222233322221 11222222 1 146788 Q ss_pred eecCC-CCCChH-HHHHHHHHHHHHhcCCCeeeccCCCCccchh-hhhHHHHHHHHHHHHHHHHHHHHHhhhhh-----h Q lcl|Aclame:pro 317 DILQG-SKVDLA-EDVEYMLNRLISALKVPKAFIGYEGDVNAKN-TLATQDIKFNNTIKRIQGFFVEELERMVR-----M 388 (533) Q Consensus 317 ~TLpG-~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~-eI~rde~kF~kfI~rLr~~F~~~l~~qLi-----l 388 (533) +.+.. |+.+.. .=++|..+++-+++--.. |..+.+.|.++ ......-.+.+-++...+.+.+.|..||| + T Consensus 286 e~~ea~~~~~~~~~~i~~~d~~Isk~iLGqt--lTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~Li~~l~~l 363 (448) T protein:vir:77 286 DTVDLKSAMPDAIPYLTYHDAGIARALGIDF--NTVQLNMGVQAVNIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLP 363 (448) T ss_pred EEEecCCCccCHHHHHHHHHHHHHHHHhccc--cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 88863 232222 238899998877764432 44444433322 22211112334344444444455555543 4 Q ss_pred ccCCCccce-eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCccc Q lcl|Aclame:pro 389 NKEFADQDF-RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGF 467 (533) Q Consensus 389 k~i~t~eew-~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~ 467 (533) |.. ....- ++.|-.. |-.+..-+.+++..|.. |++ ..+.+. .+... T Consensus 364 Nfg-~~~~~P~~~f~~~----e~eDl~~~a~~~~~l~~--------~~~-~~~~ip-----------~~~~~-------- 410 (448) T protein:vir:77 364 NWP-GATRFPRLTFEME----ERNDFSAAANLMGMLIN--------AVK-DSEDIP-----------TELKA-------- 410 (448) T ss_pred cCC-CCCCCCEEEecCC----ChhhHHHHHHHhHHHHH--------HHH-HHhcCC-----------ccCCc-------- Confidence 411 11111 3444322 33454445555554431 211 111221 11000 Q ss_pred ccccchhh-hcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhc Q lcl|Aclame:pro 468 GEETTPAD-FLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEET 520 (533) Q Consensus 468 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (533) +.+..|.+ ......++.+.|. ..-....+....+--- T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~r~~~ 448 (448) T protein:vir:77 411 LIDALPSKMRRALGVVDEVREA----------------VRQPADSRYLYTRRRR 448 (448) T ss_pred CCCCCchhcccccCCCCCCCch----------------hhcchhhHHHHhhhcC Confidence 00000000 0000000000000 0000111111111111 No 157 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=97.62 E-value=3.6e-05 Score=44.96 Aligned_cols=381 Identities=12% Similarity=0.043 Sum_probs=166.0 Q ss_pred HHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceee Q lcl|Aclame:pro 13 AVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECT 92 (533) Q Consensus 13 ~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneai 92 (533) +-+...|+ ++..++. +......+..+. +..+.|..-+. ..+...|-|.+||+.|++.+= T Consensus 1 MGl~~~~~----~~~~~~~-----~~~~~~~~~~~~----~~~~~~~~vt~--------~~al~~~~v~~~i~~Ia~~iA 59 (394) T protein:vir:62 1 MGLRDRFS----NYLFKKA-----EKRGYLDNVLGK----SIRYSGVYVTD--------SNILQSSDVYELLQDISNQMV 59 (394) T ss_pred Cchhhhhh----hhccCCC-----Cchhhhhhhhhc----ccccCccccCh--------hhhhccHHHHHHHHHHHHhhc Confidence 11111111 1111111 000000111111 11111211111 112346899999999998733 Q ss_pred -----ecCCCCceeeeecccccccHHHHHHHHH----HhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcc Q lcl|Aclame:pro 93 -----IPNENGNIVDVVTKDIELAKAILSYLDY----VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPY 163 (533) Q Consensus 93 -----v~d~~~~~v~v~l~~~e~s~si~~~i~~----ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~ 163 (533) ++..++.. ..+...-.++. .+......+..+..++++|+.|..+.-+ .+ ..+ . T Consensus 60 ~lp~~v~~~~g~~---------~~~~~~~~Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~----~~---~~~--~ 121 (394) T protein:vir:62 60 LADIVVEDEFGNE---------IKDDIALQILRNPNNYLTQSEFIKLMTNTYLLEGETFPILNGA----QI---HLA--S 121 (394) T ss_pred ccceEEEcCCCcc---------cchhhHHHHhccCCCCCCHHHHHHHHHHHHHhcCCeEEEEecc----ee---ecc--c Confidence 33333221 11111111111 1234557777888999999998875321 11 122 2 Q ss_pred eeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 164 IFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVV 243 (533) Q Consensus 164 ~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~ 243 (533) .+.+..+..+ ++.|+. .+..+++.+|+|+.+...++ -+|+|.++.|.+.+.....++....-+--- T Consensus 122 ~~~~~~~~~~---~~~~~~---------~~~~~~~~eiih~r~~~~d~--~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n 187 (394) T protein:vir:62 122 NVFTELDDNL---VEHFNI---------GGHEIPPCMIRHVKNIGADH--LRGKGILDLGRDTLEGVMSAEKTLTDKYKK 187 (394) T ss_pred cceEEECCce---EEEEee---------CCEEechhheEEecCcCCCC--ccccChHHHHHHHHHHHHHHHHHHHHHHHc Confidence 3444555444 222221 12467889999997544443 489999999999988877777754433322 Q ss_pred ccccceeeecCCCCCchhhHH-HHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC Q lcl|Aclame:pro 244 RSVDRRVFYVDVGNVPPDKIN-EYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS 322 (533) Q Consensus 244 RAPeRr~fyidvGnlp~~kAe-qy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~ 322 (533) -+-.+-++.++..--|...+. .-.+.+..+|+. -.+.|.+. + | .++.+.++..|.-. T Consensus 188 g~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~g----~~n~g~~~----------v-----l---~~g~~~~~~~l~~~ 245 (394) T protein:vir:62 188 GGLLTFLLNLDAHINPQNGAQSKLINAILDQLES----IDEARSVK----------M-----I---PLGKGYSIDTLKSP 245 (394) T ss_pred cCCcceEEEeCCCCCcCHHHHHHHHHHHHHHhcc----ccccCcee----------E-----e---eCCCceeEEecCCC Confidence 343444555544322223222 223333333321 11223221 0 1 22334455444321 Q ss_pred --CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccceeE Q lcl|Aclame:pro 323 --KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFRL 399 (533) Q Consensus 323 --nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~~ 399 (533) .+.-++=.++-.+.+.++++||...|+.. +. +.+......|.+ -|.-+-.++.+.|...|+..... ..+.| T Consensus 246 ~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~-~~---sn~e~~~~~~~~~~l~P~~~~ie~~l~~kll~~~~~--~~~~~ 319 (394) T protein:vir:62 246 LDDEKTLAYLNVYKKDLGKFLGINVDTYTEL-IK---EDIEKAMMYIHNKAVRPIMKNFEDHLSLLFYAQNSG--KRIKF 319 (394) T ss_pred cchHHHHHHHHHHHHHHHHHhCCCHHHcCCC-CC---cCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccc--CceEE Confidence 12223334567789999999999999742 22 223333344543 45555567777777777644321 23556 Q ss_pred EecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCc Q lcl|Aclame:pro 400 VMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGE 479 (533) Q Consensus 400 ~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~ 479 (533) +|........ . .|.+++.. +-+..-||.+|.-. .++-.++.. ++-+.--.+ . T Consensus 320 ~fd~~~~~~~----~---~~~~~~~~----------~~~~g~~T~NE~R~-----~~gl~p~~~-~~gd~~~~~-----~ 371 (394) T protein:vir:62 320 KINILDFVTY----S---NKTNIGYN----------LVRTAITSPDNVAD-----MLGFPKQNT-KESQAIYIS-----N 371 (394) T ss_pred EechhhhcCH----H---HHHHHHHH----------HHhCCCcCHHHHHH-----HhCCCCCCC-CCCCeeecc-----c Confidence 6655443221 1 23333222 22344577644322 112222211 111110000 0 Q ss_pred cCCcccccCCCcccccCCCCCccCCCccCcC Q lcl|Aclame:pro 480 RGSPIESPRGRTEFDFGTEGGEELGGELNLG 510 (533) Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (533) ...|+... ........|||-|-+ T Consensus 372 n~~~~~~~--------~~~~~~~kgge~~en 394 (394) T protein:vir:62 372 DVTEIGKK--------EATDGSLGGGEENEN 394 (394) T ss_pred cccccccc--------ccccccCCCCCCCCC Confidence 01111111 111222334432211 No 158 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=97.62 E-value=3.6e-05 Score=44.93 Aligned_cols=407 Identities=12% Similarity=0.011 Sum_probs=190.3 Q ss_pred CCCcchhhhhh-hHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchH-------HHHHHHHH Q lcl|Aclame:pro 1 MPSLEKYKKLN-EAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRF-------FLYDMYDR 72 (533) Q Consensus 1 ~~~~~~w~k~d-e~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~-------~li~~YR~ 72 (533) +|.=.|-+... .+...+++......+ ....+++...++. -.++-|++ T Consensus 7 ~~~g~~~~~~~~~~~~~~~ia~~~~~~-------------------------~~~~~~~~~p~~~~il~~~~~~~~~y~~ 61 (491) T protein:vir:79 7 VSPTEFVKFGEPDKSLSSQIATRARSI-------------------------DFFALGMYLPNPDPVLKALGKDIRVYRE 61 (491) T ss_pred CCCCCcccccccchhHHHHHhhhcccc-------------------------ccccccccCcchhHHHhhccCCHHHHHH Confidence 12111100000 000011111110000 0111111111111 12678999 Q ss_pred HhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCC- Q lcl|Aclame:pro 73 MDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSD- 151 (533) Q Consensus 73 m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k- 151 (533) |. .|++|.++++.+..-+...+..-.|- -.+.+..+.+. ..++.++|+..+.++.. -..+|-.+++++..... T Consensus 62 m~-~D~~i~s~l~~Rk~av~~~~w~i~~~---~~~~~~a~~i~-e~l~~~~~~~~i~~~ld-a~~~G~s~~Ei~w~~~~g 135 (491) T protein:vir:79 62 LR-ADAHVGGCVRRRKAAVKALEWGLDRG---KAKSRVAKSIA-DVFADLDLSRIATEMLD-AVLYGYQPMEITWGKVGN 135 (491) T ss_pred Hh-hChHHHHHHHHHHHHHhCCCcEEecC---CCCHHHHHHHH-HHHhcCCHHHHHHHHHH-hhhhcceeEEEEEeecCC Confidence 97 69999999999987655443321111 11112222322 23334578888877776 45599999998875432 Q ss_pred -CCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHH Q lcl|Aclame:pro 152 -GTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQL 230 (533) Q Consensus 152 -~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqL 230 (533) -.+.++...||+.++ ++..+...+- - .+.+..++.+++...++++|..-.+. ++|.|.|+.|..+|-.. T Consensus 136 ~~~~~~l~~r~~~~f~--~d~~~~l~l~-~------~~~~~~g~~lp~~k~i~~~~~~~~g~-p~g~gLl~~~~w~~~fK 205 (491) T protein:vir:79 136 YIVPIDVVGKPADWFV--YDPENQLRFR-S------KEHWVQGEELPARKFLVPRQEATYLN-PYGFPDLSMCFWPTTFK 205 (491) T ss_pred eeeEEeeeeeccccee--eccCCceEEe-e------cCCCCCceeecCCCeEEEEecCCCCC-cccchhHHHHHHHHHHH Confidence 235678888888664 4444432211 1 12234567788999999999877776 89999999999999999 Q ss_pred HHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccC Q lcl|Aclame:pro 231 RLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGD 310 (533) Q Consensus 231 rm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g 310 (533) +......+.+=-.-+-.=|+..++-|.-.+.|. ..++.+. ... -| .+-| +| T Consensus 206 ~~~~~~w~~f~E~~G~P~~igky~~~a~~~ek~-~l~~al~-~~~----~~--a~~v-----------------iP---- 256 (491) T protein:vir:79 206 KGGLKFWVQFTEKYGSPMLVGKHPRSASDAETN-LLLDRLE-DMV----QD--AVAV-----------------IP---- 256 (491) T ss_pred HhhHHHHHHHHHHcCCCeEEEecCCCCCHHHHH-HHHHHHH-HHh----cC--eEEE-----------------ec---- Confidence 999887777765445455666667664333221 1222221 111 11 1111 11 Q ss_pred CCcceeeecCC-CCCCh----HHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 311 RRAVEIDILQG-SKVDL----AEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERM 385 (533) Q Consensus 311 ~~gtEi~TLpG-~nlg~----i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~q 385 (533) .|++|+.+.. +.-|. ..=++|..+++-+++-= .-|..+++.+++..-+-.+ -+...++..++...+.|. | T Consensus 257 -~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLG--qtlTt~~~gs~a~~~vh~~-v~~~i~~~D~~~i~~tln-~ 331 (491) T protein:vir:79 257 -DDSSIEIKEAAGKSGSADVYERLLHFCRGEVSIALLG--QNQTTEATSTRASAQAGLE-VTDDIRDGDKAIVVEAMN-M 331 (491) T ss_pred -CCceeEEEeccCCCCChhHHHHHHHHHHHHHHHHHhh--hhhccCcccchhhHHHHHH-HHHHHHHHHHHHHHHHHH-H Confidence 3677777742 12222 22389999998877631 1234444444443222223 355566666665555553 3 Q ss_pred hh-----hccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccC Q lcl|Aclame:pro 386 VR-----MNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGG 460 (533) Q Consensus 386 Li-----lk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~ 460 (533) || +++.- ....+|.|.... | ..+...+++..|..+-==|.+.|+++.+. ++. T Consensus 332 li~~l~~~N~~~-~~~p~f~~~e~e---e--~~~~~a~~~~~L~~~G~~i~~~~~~e~~G-ip~---------------- 388 (491) T protein:vir:79 332 LIRWICDLNFDG-AARPVFDMWEQE---Q--VDEIQAGRDEKLTRAGARFTPAYFKRAYN-LQD---------------- 388 (491) T ss_pred HHHHHHHhcCCC-CCcceEeecCcC---c--hhHHHHHHHHHHHhCCCccCHHHHHHHhC-CCC---------------- Confidence 33 45432 223355554322 1 11344556666666422267778876543 222 Q ss_pred CCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 461 LFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) ++.+++..|. ..|..+-...+. + ..+..+...+.. .++ +..+.-+ T Consensus 389 ----~~~~e~~~~~----------~~~~~~~~~~~~---------~--~~~~~~~~~d~~--~~~-~~~~~~~ 433 (491) T protein:vir:79 389 ----GDLDERPLPV----------SAVDAVGAASFA---------E--FEAPDQDALDAA--LNA-LSARDLN 433 (491) T ss_pred ----CCCCccccCc----------Cccccccccccc---------c--cCCCCCcchHHH--HHH-HHHHHHH Confidence 1111111110 000000000000 0 000000000000 000 0000000 No 159 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=97.62 E-value=3.7e-05 Score=44.88 Aligned_cols=426 Identities=12% Similarity=0.048 Sum_probs=161.3 Q ss_pred hhhhhhHHHHHHhhcccc-cccCcccCCCCccc---CCCCCccccc--hhhcccccCccccchHHHHHHHHHHhh-c--- Q lcl|Aclame:pro 7 YKKLNEAVNFTNFLSPMY-GMGAPHGAGGSSMI---PINMYHPFAT--AGYASRFYGGIEFNRFFLYDMYDRMDY-T--- 76 (533) Q Consensus 7 w~k~de~~~~~~~~~~~~-s~~~p~~~~gas~i---~~~~~~~~~~--~~~~~~~ygg~~~n~~~li~~YR~m~~-~--- 76 (533) --|++|-+-+..+.-++- .|. +...+.--- +-+.....-. .++. .+ .......++++++.+. . T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~--~~~n~~~~~~~~e~~~~~~~~~i~~~i~-~~----~~~~~~r~~~l~~Yy~g~~~i 73 (511) T protein:vir:96 1 MLKVNEFETDTDLRGNINYLFN--DEANVVYTYDGTESDLLQNVNEVSKYIE-HH----MDYQRPRLKVLSDYYEGKTKN 73 (511) T ss_pred Cccccchhhhhhhhhhhhhhhh--hhhCCccccchhhhhhhccHHHHHHHHH-HH----HHhhHHHHHHHHHHhcccCcc Confidence 223333332322221111 111 111110000 0000000000 0000 00 0000001111111110 1 Q ss_pred ------------------ChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhc Q lcl|Aclame:pro 77 ------------------DPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKY 138 (533) Q Consensus 77 ------------------~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvD 138 (533) ++-+.-+++..+...+ +.|+.+..++-+. ++.+..|.+.-+|+....+.++..++. T Consensus 74 ~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~-----g~p~~~~~~~~~~-~~~l~~~~~~n~~~~~~~~~~~~~~i~ 147 (511) T protein:vir:96 74 LVELTRRKEEYMADNRVAHDYASYISDFINGYFL-----GNPIQYQDDDKDV-LEAIEAFNDLNDVESHNRSLGLDLSIY 147 (511) T ss_pred ccccCcCcccccCcceeecchHHHHHHHHHhhhc-----cCCceeecCchHH-HHHHHHHHhhcCHHHHHHHHHHHHHhc Confidence 1223333333332222 5677776654222 222333444457899999999999999 Q ss_pred CceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCcE------EEE-----------------Eeccccee--cccCCcc Q lcl|Aclame:pro 139 GDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDT------WYY-----------------VITDVYRN--VVSGYFN 193 (533) Q Consensus 139 Gr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~------e~y-----------------~y~~~~~~--~~~~~~~ 193 (533) |+.|.+...| ++|-..+..+||+.+-++++..+.. .|| +|+....+ ...++.. T Consensus 148 G~a~~~vy~d--ed~~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~ 225 (511) T protein:vir:96 148 GKAYELMIRN--QDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNG 225 (511) T ss_pred CeeEEEEEeC--CCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCc Confidence 9999988775 3456679999999999999866531 122 12222111 0000100 Q ss_pred cc------------cCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHH--HHHHHHHhccccceeeecCCCCCc Q lcl|Aclame:pro 194 ED------------IPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMED--ALMLYRVVRSVDRRVFYVDVGNVP 259 (533) Q Consensus 194 ~~------------~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed--alVIyRi~RAPeRr~fyidvGnlp 259 (533) .. +..=.++.|.. ...|.|-++.++....-|-.+-- +-.++ -.+.| +.++- |... T Consensus 226 ~~~~~~~~~~~~~~~~~vPvv~~~n------n~~g~gd~e~v~~liDa~d~~~S~~~~~~~-~~~~~---~lv~~-g~~~ 294 (511) T protein:vir:96 226 LKLTPRENGFESHSFERMPITEFSN------NERRKGDYEKVITLIDLYDNAESDTANYMS-DLNDA---MLLIK-GNLN 294 (511) T ss_pred ccccccccccccccCCceeeEEecC------CCCCCCchhhhHHHHHHHHHHHHHHHHHHH-HhhCc---eeeee-cCcc Confidence 00 00011222221 13566767665554443333222 11122 12221 11211 1000 Q ss_pred hhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhh---hhcccccCCCcceeeecCCC-CCChH-HHHHHHH Q lcl|Aclame:pro 260 PDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKD---YFIPRRGDRRAVEIDILQGS-KVDLA-EDVEYML 334 (533) Q Consensus 260 ~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleD---ywlprR~g~~gtEi~TLpG~-nlg~i-~Dv~Yf~ 334 (533) . .++++..++.. .+-.+.. ........+.+..+..|-.. +...+ .-+.-+. T Consensus 295 -~---------------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~ 350 (511) T protein:vir:96 295 -L---------------------DPVEVRKQKEA--NVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLN 350 (511) T ss_pred -C---------------------Cchhhcccccc--cceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHH Confidence 0 00011101100 0000000 00000111223445555332 33322 3367788 Q ss_pred HHHHHhcCCCeeeccCCCCccchhhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--h-----hccCC-Cccce---eEEe Q lcl|Aclame:pro 335 NRLISALKVPKAFIGYEGDVNAKNTLAT--QDIKFNNTIKRIQGFFVEELERMV--R-----MNKEF-ADQDF---RLVM 401 (533) Q Consensus 335 ~kLy~aL~VP~srl~~~~~~gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--i-----lk~i~-t~eew---~~~f 401 (533) +.++.-.++|---.+.-+ |..|.++. -......-+.+.++.|...|++.+ | .++.. ...+| ++.| T Consensus 351 ~~I~~~s~~p~~~~~~~~--~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f 428 (511) T protein:vir:96 351 SDIHMFTNTPNMKDDNFS--GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVY 428 (511) T ss_pred HHHHHHhCCccccccccc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccceEEe Confidence 999999999974332111 33333332 222223344444555665555432 2 12222 24455 5777 Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccC Q lcl|Aclame:pro 402 NRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERG 481 (533) Q Consensus 402 ~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (533) .+.---.+.. .++++..+..-+|+.++.+.+-..+| -.++-+.|++|..+...... ..... T Consensus 429 ~~~~p~n~~e-------~~~~~~kl~G~iS~et~l~~l~~v~D-~~~E~~ri~~E~~~~~~~~~-----------~~~~~ 489 (511) T protein:vir:96 429 NRNLPKSLIE-------ELKAYIDSGGKISQTTLMSLFSFFQD-PELEVKKIEEDEKESIKKAQ-----------KGIYK 489 (511) T ss_pred CCCCCCCHHH-------HHHHHHHHhccCChHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHHh-----------hcccc Confidence 6432222222 23445555667999998876544443 33344555555432111100 00001 Q ss_pred CcccccCCCcccccCCCCCccCCCccCcCcccCCchhh Q lcl|Aclame:pro 482 SPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEE 519 (533) Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (533) ++- +... ++-+-++.....+++ T Consensus 490 ~~~--~~~~--------------~~~~~~~~~~~~~~~ 511 (511) T protein:vir:96 490 DPR--DIND--------------DEQDDDTKDTVDKKE 511 (511) T ss_pred CCC--CCCC--------------CCCCCcccccccccC Confidence 110 0000 000000111110000 No 160 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=97.61 E-value=3.7e-05 Score=44.87 Aligned_cols=431 Identities=13% Similarity=0.083 Sum_probs=162.1 Q ss_pred hhhhhhHHHHHHhhcccc-cccCcccCCCC-cccCCCCCcccc--chhh-------------cccccCcccc---chHHH Q lcl|Aclame:pro 7 YKKLNEAVNFTNFLSPMY-GMGAPHGAGGS-SMIPINMYHPFA--TAGY-------------ASRFYGGIEF---NRFFL 66 (533) Q Consensus 7 w~k~de~~~~~~~~~~~~-s~~~p~~~~ga-s~i~~~~~~~~~--~~~~-------------~~~~ygg~~~---n~~~l 66 (533) --|++|-+-+..+.-.+- .|....+..=. ...+-+.....- ..++ ...+|-|... ..... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~ 80 (511) T protein:vir:10 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKCIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRR 80 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhcCCccCchhhhhcccCHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccccCcc Confidence 223333333332221111 11111110000 000000000000 0000 0111111100 00000 Q ss_pred HHHH---HHHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeE Q lcl|Aclame:pro 67 YDMY---DRMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFL 143 (533) Q Consensus 67 i~~Y---R~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~ 143 (533) ...+ .++ .++-+.-+++..+...+ +.|+.+...+-+ ..+....|.+.-+|+....++++.+++.|+.|. T Consensus 81 ~~~~~~~~ki--~~n~~k~Iv~~~~~yl~-----g~p~~~~~~d~~-~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~ 152 (511) T protein:vir:10 81 KEEYMADNRV--AHDYASYISDFINGYFL-----GNPIQYQDDDKD-VLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYE 152 (511) T ss_pred cccccCccee--ecchHHHHHHHHhhhhc-----ccCceeecCchH-HHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeEE Confidence 0000 001 01233334444333222 566666655422 222233344445789999999999999999999 Q ss_pred EEeecCCCCCeeeeEEcCcceeeEEeeccCcE--E----EE-----------------Eeccccee--cccCCcccc--- Q lcl|Aclame:pro 144 HILEKGSDGTIEKFQVVSPYIFSKRYNPETDT--W----YY-----------------VITDVYRN--VVSGYFNED--- 195 (533) Q Consensus 144 ~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~--e----~y-----------------~y~~~~~~--~~~~~~~~~--- 195 (533) +...| ++|-..++.+||+.+-++++..+.. . || +|+....+ ...++.... T Consensus 153 ~vy~d--edg~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~ 230 (511) T protein:vir:10 153 IMIRN--QDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTP 230 (511) T ss_pred EEEeC--CCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCCcccccc Confidence 88775 3566679999999999999876531 1 11 12222111 011111000 Q ss_pred ---------cCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHH--HHHHHHHhccccceeeecCCCCCchhhHH Q lcl|Aclame:pro 196 ---------IPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMED--ALMLYRVVRSVDRRVFYVDVGNVPPDKIN 264 (533) Q Consensus 196 ---------~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed--alVIyRi~RAPeRr~fyidvGnlp~~kAe 264 (533) +..=.+++|.. ...|.|-++.++....-|-.+-- +-.++. .+. ++.++- |... T Consensus 231 ~~~~~~~~~~~~vPvv~f~n------n~~g~gd~e~v~~liDa~d~~~S~~~~~~~~-~~~---~~lv~~-g~~~----- 294 (511) T protein:vir:10 231 RENGFESHSFERMPITEFSN------NERRKGDYEKVITLIDLYDNAESDTANYMSD-LND---AMLLIK-GNLN----- 294 (511) T ss_pred cccccccccCcceeEEEecC------CCCCCCchhhhHHHHHHHHHHHHHHHHHHHH-hhC---ceeeee-cccc----- Confidence 00011233221 13566777765544443332211 112222 222 222211 1000 Q ss_pred HHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhh-hhcc--cccCCCcceeeecCCC-CCChH-HHHHHHHHHHHH Q lcl|Aclame:pro 265 EYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKD-YFIP--RRGDRRAVEIDILQGS-KVDLA-EDVEYMLNRLIS 339 (533) Q Consensus 265 qy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleD-ywlp--rR~g~~gtEi~TLpG~-nlg~i-~Dv~Yf~~kLy~ 339 (533) ..+.++..++.. .+-.+.. .+.+ -...+.|..+..|-.. +...+ .-+.-+.+.+|. T Consensus 295 -----------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~ 355 (511) T protein:vir:10 295 -----------------LDPVEVRKQKEA--NVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHM 355 (511) T ss_pred -----------------CCchhhccchhc--cceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHH Confidence 000000000000 0000000 0000 0011112333333221 33222 336778889999 Q ss_pred hcCCCeeeccCCCCccchhhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--hh-----cc-CCCccce---eEEecCCcH Q lcl|Aclame:pro 340 ALKVPKAFIGYEGDVNAKNTLAT--QDIKFNNTIKRIQGFFVEELERMV--RM-----NK-EFADQDF---RLVMNRSNS 406 (533) Q Consensus 340 aL~VP~srl~~~~~~gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--il-----k~-i~t~eew---~~~f~~dn~ 406 (533) -.++|---.+.- .|..|.++. -......-+.+.++.|.+.|++.+ |+ ++ .-.+.+| ++.|.+.-- T Consensus 356 ~s~~P~~~~~~~--~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~i~f~~~~p 433 (511) T protein:vir:10 356 FTNTPNMKDDNF--SGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLP 433 (511) T ss_pred HhCCcccccccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccceeeEEeCCCCC Confidence 999987432211 133333332 122233345555556766655432 21 12 2234455 677765333 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccc Q lcl|Aclame:pro 407 IVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIES 486 (533) Q Consensus 407 f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (533) -.+. +.++++..+..-++++++++.+-..+| ..++-++|++|..+...... .....++ . T Consensus 434 ~d~~-------~~~~~~~kl~G~iS~et~~~~l~~v~d-~~~E~~ri~~E~~~~~~~~~-----------~~~~~~~--~ 492 (511) T protein:vir:10 434 KSLI-------EELKAYIDSGGKISQTTLMSLFSFFQD-PELEVKKIEEDEKESIKKAQ-----------KGIYKDP--R 492 (511) T ss_pred cCHH-------HHHHHHHHHhccCcHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHHh-----------hhcccCC--C Confidence 2222 234455555567899998877655544 33344556666442111100 0000111 0 Q ss_pred cCCCcccccCCCCCccCCCccCcCcccCCchhh Q lcl|Aclame:pro 487 PRGRTEFDFGTEGGEELGGELNLGGAFEEFEEE 519 (533) Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (533) +... ++-+-++...+.++. T Consensus 493 ~~~~--------------~~~~~~~~~~~~~~~ 511 (511) T protein:vir:10 493 DIND--------------DEQDDDTKDTVDKKE 511 (511) T ss_pred CCCC--------------CCCCCcccCcccccC Confidence 0000 000000111111111 No 161 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=97.61 E-value=3.8e-05 Score=44.79 Aligned_cols=329 Identities=12% Similarity=0.100 Sum_probs=149.2 Q ss_pred cchhhh--------hhhHHHHHH--hhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHH Q lcl|Aclame:pro 4 LEKYKK--------LNEAVNFTN--FLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRM 73 (533) Q Consensus 4 ~~~w~k--------~de~~~~~~--~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m 73 (533) +.+=++ .+....++. -....|+|+-|..--....+ .+- .....++.+|..-+ +...|-+-+|.- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~----~~~-~~~~~~~~~~~pp~-~~~~la~~~~~~ 74 (351) T protein:vir:79 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEI----LDY-VECWSNGEWFEPPV-SFAGLAKSFRAS 74 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchh----hhh-hhhhhcCceecCCC-CHHHHHHHHhhh Confidence 111111 011111111 11223333222210000000 000 11122233333222 344556666632 Q ss_pred hhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCC Q lcl|Aclame:pro 74 DYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGT 153 (533) Q Consensus 74 ~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~g 153 (533) |...+||---+|.... .+- -+..++.. .| ...+..+++.|+.|+.++.+. .+. T Consensus 75 ----~~h~~~l~~k~n~l~~-~~~--------Pnp~~t~~---------~f----~~~v~d~ll~Gnay~~~~r~~-~G~ 127 (351) T protein:vir:79 75 ----THHSSALFFKANVLAS-TFR--------PHRWLSRH---------AF----ERWALDFLTFGNGYLERRRNM-VGG 127 (351) T ss_pred ----HhhhhhhhhhhhHHhh-ccc--------CCCCCCHH---------HH----HHHHHHHHhcCCeEEEEEECC-CCC Confidence 3445555433332211 000 11112221 12 345667889999999999874 467 Q ss_pred eeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 IEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLM 233 (533) Q Consensus 154 I~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~ 233 (533) +.+|..|+|.+|++..+..+ ||.+.. ++....+++.+|+|+..-.+.+ +-||+|-+..|+..+..- T Consensus 128 ~~~L~~l~~~~v~~~~~~~~---~~~~~~-------~g~~~~~~~~eIihir~~~~~~-~~yGl~~~~~a~~si~l~--- 193 (351) T protein:vir:79 128 TLRLEPALAKYVRRKADFSG---FVYVNG-------WQERHEFEPDSVFQLVRPDINQ-EVYGLPEYLSSLHSAWLN--- 193 (351) T ss_pred EEEEEEeCCcceeeeecCCe---EEEEec-------CceEEEEcCccEEEeCCCCCCC-CcccccHHHHHHHHHHHH--- Confidence 89999999999988776653 332211 2344668899999996433222 348999888777665542 Q ss_pred HHHHHHHH--Hh--ccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhccccc Q lcl|Aclame:pro 234 EDALMLYR--VV--RSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRG 309 (533) Q Consensus 234 EdalVIyR--i~--RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~ 309 (533) .+.-.|| .. -|-..-|+|+.-+++-+ ++.+-+++-++.++ | ..|..+ +-++ .| -. T Consensus 194 -~~a~~~~~~~f~NGa~pg~il~~~~~~ls~-e~~~~lk~~~~~~~---------G----~~N~~~-~~v~----~~-~g 252 (351) T protein:vir:79 194 -ESSTLFRRKYYENGSHAGFILYMTDAAQKQ-DDVDNMRDALKNAK---------G----PGNFRN-VFMY----AP-GG 252 (351) T ss_pred -HHHHHHHHHHHhccCCCceEEEecCCCCCH-HHHHHHHHHHHHhc---------C----ccccCc-eeEe----cC-CC Confidence 2333333 11 12234555654445543 33444444444432 1 111100 1011 01 00 Q ss_pred CCCcceeeecCCCCCChHHHHH------HHHHHHHHhcCCCeeeccCCCC-ccchhhhhHHHHHHHH-HHHHHHHHHHHH Q lcl|Aclame:pro 310 DRRAVEIDILQGSKVDLAEDVE------YMLNRLISALKVPKAFIGYEGD-VNAKNTLATQDIKFNN-TIKRIQGFFVEE 381 (533) Q Consensus 310 g~~gtEi~TLpG~nlg~i~Dv~------Yf~~kLy~aL~VP~srl~~~~~-~gr~~eI~rde~kF~k-fI~rLr~~F~~~ 381 (533) ...|.++.-|.- ...|.+ +-.+.+.++.+||...++.-++ .+-.+.+.-...-|.+ -|.-|+.+|+++ T Consensus 253 ~~~gi~~~pl~~----~~~d~ef~e~k~~s~~eI~~a~~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~Pl~~~ie~l 328 (351) T protein:vir:79 253 KKDGIQLIPVSE----VAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAEL 328 (351) T ss_pred CccceEEEEcCC----ChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH Confidence 123455553311 113333 4455699999999999976332 2222334333444553 566677777653 Q ss_pred HhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 382 LERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGI 422 (533) Q Consensus 382 l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~ 422 (533) . ..| . ++ +.++.+.++++.-... T Consensus 329 n-~~l------g-~~----------~~~F~~~~llr~d~~a 351 (351) T protein:vir:79 329 N-DWL------G-DE----------VVTFDDYEIPPAPVAA 351 (351) T ss_pred H-hhc------C-cc----------eeeeChhhhccccccC Confidence 2 211 1 11 1233444455444443 No 162 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=97.60 E-value=4e-05 Score=44.71 Aligned_cols=362 Identities=13% Similarity=0.103 Sum_probs=193.3 Q ss_pred CCCCccccchhhcccccCcccc------ch-HHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccH Q lcl|Aclame:pro 40 INMYHPFATAGYASRFYGGIEF------NR-FFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAK 112 (533) Q Consensus 40 ~~~~~~~~~~~~~~~~ygg~~~------n~-~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~ 112 (533) .+.+.+.... -..||-|... +- .++-..+| +. -+-+.-+|+.+++-+.+-++. ..+. T Consensus 1 l~~~~~r~~~--~~~yY~g~~~~~~~~~~~p~~~~~~~~-~v--~nw~~~~Vds~a~rl~~~Gf~-------~~d~---- 64 (410) T protein:vir:95 1 MNLYQSRVNL--RYKHYAMQHYEAPTGITIPAHIRAKYQ-AV--LGWAAKGVDSLADRLIFRAFA-------NDDF---- 64 (410) T ss_pred CCcchhhHHH--HHHHhcCCCCccccchhccHHHHhHHH-hh--cchhHHHHHHhHhhhcccccc-------CCCc---- Confidence 3322222111 1234443211 11 12222344 32 256777888887755544432 1111 Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCcEE---------------- Q lcl|Aclame:pro 113 AILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDTW---------------- 176 (533) Q Consensus 113 si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~e---------------- 176 (533) -...+...=+|+.+..+.++.-+++|+.|.-..-+ .+|-..++.++|+++..++|..+++- T Consensus 65 -~l~~i~~~N~ld~~~~~~~~~al~~G~sf~~v~~~--~d~~~~i~~~sP~~~~~i~Dp~~~~~~~al~~~~~~~~~~~~ 141 (410) T protein:vir:95 65 -NVTEIFDRNNPDIFFDSAILSALIGSCSFVYISKG--EDDEVRLQVIESSNATGVIDPITGLLVEGYAVLARDDYNRPT 141 (410) T ss_pred -hHHHHHhhcChHHHHHHHHHHHHHhCceeEEEecC--CCCceEEEEEcccceEEEEeCCCCceEEEEEEEEecCCCeEE Confidence 12334455678999999999999999988775443 23434688999999999998865521 Q ss_pred -EEEeccccee-----cccCCcccccCcccEEEEecCcccCcccccchhH-HHHHHHHHH-HHHHHHHHHHHHHhccccc Q lcl|Aclame:pro 177 -YYVITDVYRN-----VVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYL-ESARAIWNQ-LRLMEDALMLYRVVRSVDR 248 (533) Q Consensus 177 -~y~y~~~~~~-----~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L-~~Aik~~Nq-Lrm~EdalVIyRi~RAPeR 248 (533) ..+|.+..+. ++.....+....=-+++|.+.--. ..++|.|=| +..+...+- -|.+.+.++.-...=.|.| T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~l-~~~~G~s~I~~~v~~l~da~~r~~~~~~~~~e~~a~pqr 220 (410) T protein:vir:95 142 LEAYFEPNATHFIPKDGEPYSVTNETGIPLLVPVIHRPDA-VRPFGRSRITRAGMYYQKYAKRTLERADITAEFYSWPQK 220 (410) T ss_pred EEEEEeCCcEEEEeeCCccccccCCCCCcceEEecccccC-CccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhh Confidence 1222221111 111111122222356777754322 236888855 344444333 3566777777777766777 Q ss_pred eeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChH- Q lcl|Aclame:pro 249 RVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLA- 327 (533) Q Consensus 249 r~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i- 327 (533) -++=+|--..|..+-..++ | .+ ..+|.-+++-+.+|..+++++|+.. T Consensus 221 ~i~G~d~d~~~~~~~~~~~-----------------~------------~i---~~~~~~~~~~~~~v~q~~~~~l~~~~ 268 (410) T protein:vir:95 221 YILGLDPDAEPMEKWKATV-----------------S------------SL---LTISSSDKGVKPSVGQFTTASMSPFT 268 (410) T ss_pred eeeccCCCCCcCchhhhhh-----------------h------------hh---eeccCCCCCCcceEEecCCCChHHHH Confidence 6654443111111100000 0 11 4456666677788988999877644 Q ss_pred HHHHHHHHHHHHhcCCCeeeccCCCCc-cchhhhhHHHHHHHHHHHHHHHHHHHHHhh----hhhhccCCC--ccce--- Q lcl|Aclame:pro 328 EDVEYMLNRLISALKVPKAFIGYEGDV-NAKNTLATQDIKFNNTIKRIQGFFVEELER----MVRMNKEFA--DQDF--- 397 (533) Q Consensus 328 ~Dv~Yf~~kLy~aL~VP~srl~~~~~~-gr~~eI~rde~kF~kfI~rLr~~F~~~l~~----qLilk~i~t--~eew--- 397 (533) +-++-+-..+...-++|...|+....- +-+..|.-.+....+-+.+.|+.|..-|+. -+-+.+... +.+| T Consensus 269 ~~l~~l~~~~a~~s~lP~~~lg~~~~NpsSa~Al~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~ 348 (410) T protein:vir:95 269 EQLRTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYVAACLRDEFRYTRSQFVRT 348 (410) T ss_pred HHHHHHHHHHhhhcCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccee Confidence 447777788888889999999854431 122346667777888899999999865554 233333332 3454 Q ss_pred eEEecC--CcHHHHHHHHHHHHHHHHHHH----HhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCC Q lcl|Aclame:pro 398 RLVMNR--SNSIVEGERFAVIEQRIGIAE----RLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGL 461 (533) Q Consensus 398 ~~~f~~--dn~f~E~ke~ei~~~R~~~~~----~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~ 461 (533) .+.|.+ |- +.-.+.++.+.+. ...++.++..++. .|.+|++++..+..-+++.. +. T Consensus 349 ~v~W~p~~d~------~~~s~a~~aDa~~Kl~~a~~g~~~~~~~~~-~lg~~~~~~~~~~~~e~~~~-g~ 410 (410) T protein:vir:95 349 AVKWEPLFEA------DANTMTMIGDGVVKLNQALPGYINAETIRD-LTGIAGDMSAKPVVSEGGSN-GE 410 (410) T ss_pred eEEeeecCCc------chhhHHHHHHHHHHHHHhccCCccHHHHHH-hcCCChHHHHHHHHHHHHhC-CC Confidence 344531 21 1122344555433 3345777777665 55778654433222122111 11 No 163 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=97.59 E-value=4e-05 Score=44.70 Aligned_cols=387 Identities=14% Similarity=0.073 Sum_probs=189.2 Q ss_pred hcccccccCcccCCCCcccCCCCCccccchhhcccccCcc------ccchHHHHHHHHHHhhcChhHHHHHHHhhceeee Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGI------EFNRFFLYDMYDRMDYTDPLISTVLDIIADECTI 93 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~------~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv 93 (533) |+-=... +|.- .-..+|.....+- -.+.++...+ -.+..+-++-|++|...|++|.++++..-.-+.. T Consensus 1 ~~~~~~~-~p~~-~~~~~~~~~~~~~----~~~~g~~~~D~~lr~~gg~~~~~~~l~~~m~e~D~~v~s~l~~Rk~av~~ 74 (446) T protein:vir:98 1 MNMEVRN-APTP-AIRRRTIYAMEHL----GLATSYLSEDGGYKRAGKPTYQQLSAWDEAAQTEPIIAQGLDSIALSVLN 74 (446) T ss_pred CcccccC-CCch-hhhhhhhhccccc----hhhcccCCcchHhhhcCCChHHHHHHHHHHHhcchHHHHHHHHHHHHhhc Confidence 1111111 1211 1112222111110 0011111100 0133344788999998899999999998765544 Q ss_pred cCCCCceeeeecccccccHHHH---HHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCe------eeeEEcCcce Q lcl|Aclame:pro 94 PNENGNIVDVVTKDIELAKAIL---SYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTI------EKFQVVSPYI 164 (533) Q Consensus 94 ~d~~~~~v~v~l~~~e~s~si~---~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI------~elr~ldP~~ 164 (533) .+-.-.|- ++++. +..++.+.|+..++.+ ...+.+|=.++.++.....++- ..+....|+. T Consensus 75 ~~w~V~p~---------~~~~a~~v~~~l~~~~~~~~~~~~-ldai~~G~s~~Eivw~~~~g~~~p~~~~d~~~~~~~~~ 144 (446) T protein:vir:98 75 KVGPYQHG---------DKRIKKFIDDQLRNRAKTWISHCV-KSIMTYGFSLSEQIYAHGARDNMPATVLDDIVNYHPLQ 144 (446) T ss_pred CCceecCc---------cHHHHHHHHHHHhhcCchhHHHHH-HHHHhhCceeeeEEEeecccccccchhhcccccccccc Confidence 43332231 23332 3333445666655554 4555689999988876433221 1222234444 Q ss_pred eeEEeeccCcEE------EEEecc-------------cceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHH Q lcl|Aclame:pro 165 FSKRYNPETDTW------YYVITD-------------VYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARA 225 (533) Q Consensus 165 ik~v~d~~g~~e------~y~y~~-------------~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik 225 (533) ++...+..+... -.++.. .....+..+....+|+..++++.|..-+++ +||.|.|+.|.. T Consensus 145 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iP~~kfi~~~~~~~~~~-p~G~gLlr~~~w 223 (446) T protein:vir:98 145 VMLIANDNGRIVDGDTVTASQYKSGYWVPLPPYRIGDPPKKVDVVGSHVRLPSHKRLFINYNTKGNN-PWGTSCLTSVLD 223 (446) T ss_pred ceeeeccCCccccccccchhhcccccccCcccchhhhhhhhcccCcccccccccceEEEEecCCCCC-ccccchHHHHHH Confidence 444433332210 000000 001122334456688899999999877776 899999999999 Q ss_pred HHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhh-------HHHHHHH-HHHHhhhceeeccCCCeeecccccchhh Q lcl|Aclame:pro 226 IWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDK-------INEYLTN-IAMQYKRDYWVRNNQNQFLGIDNYFSIE 297 (533) Q Consensus 226 ~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~k-------Aeqy~~~-im~~~knk~vyd~~tGei~d~~~~~n~~ 297 (533) +|-..+-.+...+.+=---.-.=|+-.++-|..++.+ ++..+.+ +++-+++ +.-| +|-| ..+ . T Consensus 224 ~~~fK~~~~~~w~~f~E~yG~P~~vGkyp~ga~~~~~~~~~~~~~~~~~~~~L~~av~~-~~~d--a~~i--i~~----~ 294 (446) T protein:vir:98 224 YSIFKRAFRDMMLIALDRYGTPLIYVIVPPGNTGVVEEAPDGTEITTTIAEQAEDALRR-LSTD--SGLV--LTQ----L 294 (446) T ss_pred HHHHHHhhHHHHHHHHhHcCCceeEEeecCCCCcccccchhHHHHHHHHHHHHHHHHHh-cccc--ceee--eec----c Confidence 9999998888777665433333444444445322222 1222211 2222221 1112 1111 000 0 Q ss_pred hHHhhhhcccccCCCcceeeecCC-CC--CChHHHHHHHHHHHHHhcCCCeeeccCCCC--ccchhhhhHHHHHHHHHHH Q lcl|Aclame:pro 298 SILKDYFIPRRGDRRAVEIDILQG-SK--VDLAEDVEYMLNRLISALKVPKAFIGYEGD--VNAKNTLATQDIKFNNTIK 372 (533) Q Consensus 298 smleDywlprR~g~~gtEi~TLpG-~n--lg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~--~gr~~eI~rde~kF~kfI~ 372 (533) + + -.|++|+.+.. ++ ..-..-++|+.+.+-+++....--|+...+ .+++..-+..++ |...++ T Consensus 295 -~-----~-----P~g~eie~~ea~~~~~~~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~ala~vh~~V-~~d~~~ 362 (446) T protein:vir:98 295 -S-----K-----EQPVQVGALTTGNNFSDSFERAISLCDNNMLMGMGIPNLLVQNRETTFGTGRASEIQLEL-FDGKIN 362 (446) T ss_pred -c-----C-----CCCceEEeeccccCChhhHHHHHHHHHHHHHHHHhcccccccccccccchhhhHHHHHHH-HHHHHH Confidence 0 0 13578887753 22 222233999999999999888655554332 222212222232 666677 Q ss_pred HHHHHHHHHHhhhhh-----hccCCCcccee-----EEecCCcHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHh Q lcl|Aclame:pro 373 RIQGFFVEELERMVR-----MNKEFADQDFR-----LVMNRSNSIVEGERFAVIEQRIGIAERLKGWV--REDWIYSNIL 440 (533) Q Consensus 373 rLr~~F~~~l~~qLi-----lk~i~t~eew~-----~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyv--gk~~i~k~il 440 (533) ...+.+.+.|.+||| +|.--...-.. +.|. +.|-.+.+.+.+++.-|..+--.+ .+.||++.+. T Consensus 363 aDa~~i~~tln~~Li~~l~~lNf~~~~~~~~~~~~~~~~~----~~e~eDl~~~a~~~~~L~~~G~~~p~~~~~ire~~g 438 (446) T protein:vir:98 363 SIFDTVIHAFTEQVIGNLIRLNFDPALYPLASNTGYITRL----PGRATDLAALVEAIKQMHDMGFLVDGDKDHIRSITG 438 (446) T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccccccccccceec----cCChhhHHHHHHHHHHHHhCCccccccHHHHHHHhC Confidence 777777777777776 33211111111 1111 234455556666666665542122 3567776653 Q ss_pred cCChhhhHHHHHHhhhcccCCCCCccccccc Q lcl|Aclame:pro 441 QIPYDLKPQEEVAEAAGGGGLFDTGGFGEET 471 (533) Q Consensus 441 ~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~ 471 (533) +.+ .++-| T Consensus 439 -iP~----------------------~~~~~ 446 (446) T protein:vir:98 439 -LPD----------------------AISST 446 (446) T ss_pred -cCC----------------------CCCCC Confidence 332 11111 No 164 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=97.54 E-value=4.8e-05 Score=44.28 Aligned_cols=384 Identities=11% Similarity=0.032 Sum_probs=155.0 Q ss_pred cCcccCCCCcccCCCCCccccchhhcccccCc-cccchHHHH-----------HHHHHHhhc------------------ Q lcl|Aclame:pro 27 GAPHGAGGSSMIPINMYHPFATAGYASRFYGG-IEFNRFFLY-----------DMYDRMDYT------------------ 76 (533) Q Consensus 27 ~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg-~~~n~~~li-----------~~YR~m~~~------------------ 76 (533) --|+. .. .+-...-.++.. ...+..++| .+|+.+... T Consensus 1 ~~~~~---~~----------~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~ 67 (472) T protein:vir:93 1 MYPSQ---PT----------QTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATG 67 (472) T ss_pred CCCCC---Cc----------chhhhhceeeecCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhccc Confidence 00110 00 000111111110 111122222 233222211 Q ss_pred ------------ChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh--hhHHHHHHHHHHHhhcCcee Q lcl|Aclame:pro 77 ------------DPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI--NIEKNAYPIIRNMIKYGDMF 142 (533) Q Consensus 77 ------------~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll--~f~~~~~e~~R~wyvDGr~~ 142 (533) ++-+.-+|+..+...+ +.|+.+..++.+..+ .+...+ +|+.++.+.++.+++.|+.| T Consensus 68 ~~~~~~~~~ri~~n~~~~ivd~~~~~l~-----g~~~~~~~~d~~~~~----~l~~~~~n~~~~~~~~~~~~~~~~G~~~ 138 (472) T protein:vir:93 68 AVDPLKPDDRMITNFHANLVDQKVSYIV-----GKPIAFKHTDDEVVK----RIDEVLGNRFDDKLHSVLTGASNKGIEW 138 (472) T ss_pred cccccccccccccchHHHHHHHHhhhhc-----ccCeeeccCChHHHH----HHHHHHhccHHHHHHHHHHHHhhcCeEE Confidence 1222233333332221 456666665533332 233333 78999999999999999999 Q ss_pred EEEeecCCCCCeeeeEEcCcceeeEEeecc--CcEEEEE-------------ecccc--eecccCCc------------- Q lcl|Aclame:pro 143 LHILEKGSDGTIEKFQVVSPYIFSKRYNPE--TDTWYYV-------------ITDVY--RNVVSGYF------------- 192 (533) Q Consensus 143 ~~kiid~~k~gI~elr~ldP~~ik~v~d~~--g~~e~y~-------------y~~~~--~~~~~~~~------------- 192 (533) .....|. +|-..+..++|+++-++++.. ++..+++ |+... .+...++. T Consensus 139 ~~v~~d~--d~~~~i~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (472) T protein:vir:93 139 LHPYLDE--EGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSK 216 (472) T ss_pred EEEEECC--CCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeecceeEEEEecCeEEEEEEecCeeeecccccccccc Confidence 8877753 455579999999999998643 2211111 11100 00000000 Q ss_pred ----ccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHH-HHHHHHHHHHhccccceeeecCCCCCchhhHHHHH Q lcl|Aclame:pro 193 ----NEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRL-MEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYL 267 (533) Q Consensus 193 ----~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm-~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~ 267 (533) .+.+..=.++.|.- .+.|.|-++..+....-+-. +=+....-+-..-| +..+...+. ....+.. T Consensus 217 ~~~~~~~~~~vPvv~~~n------n~~g~s~~e~v~~liDa~~~~~s~~~~~~~~~~~~---~~~~~g~~~--~~~~~~~ 285 (472) T protein:vir:93 217 THFSTGSWGKIPFIPFKN------NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNEL---TYVLTNYDD--QELPEFK 285 (472) T ss_pred cccccCCCCCcceEEecC------CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCc---eeEeecCCc--ccchhhH Confidence 00011111233321 13566766664444433322 22222222333333 222222121 1111111 Q ss_pred HHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC-CCCCh-HHHHHHHHHHHHHhcCCCe Q lcl|Aclame:pro 268 TNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG-SKVDL-AEDVEYMLNRLISALKVPK 345 (533) Q Consensus 268 ~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG-~nlg~-i~Dv~Yf~~kLy~aL~VP~ 345 (533) +.+ ..++ + +.++ ++. .+.+|-. .+.+. ..-+..+.+.+|...++|- T Consensus 286 ~~~-~~~~-----------------------~---~~~~---~~~--~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~ 333 (472) T protein:vir:93 286 RLL-RYYG-----------------------A---IKVS---DNG--GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVD 333 (472) T ss_pred HHH-hhcc-----------------------c---cccC---CCC--cceeEeecCCHHHHHHHHHHHHHHHHHHhCCCC Confidence 111 1100 0 1111 111 2333322 23332 2347888899999999995 Q ss_pred eeccCCCCccchhhhh--HHHHHHHHHHHHHHHHHHHHHhhhh--hhccCCCccce---eEEecCCcHHHHHHHHHHHHH Q lcl|Aclame:pro 346 AFIGYEGDVNAKNTLA--TQDIKFNNTIKRIQGFFVEELERMV--RMNKEFADQDF---RLVMNRSNSIVEGERFAVIEQ 418 (533) Q Consensus 346 srl~~~~~~gr~~eI~--rde~kF~kfI~rLr~~F~~~l~~qL--ilk~i~t~eew---~~~f~~dn~f~E~ke~ei~~~ 418 (533) --++.- .|+.+..+ -.+.....-+.+.++.|...|+.-+ |+.-.--..+| ++.|.+..--.+.. T Consensus 334 ~~~~~~--~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~v~f~~~~p~~~~~------- 404 (472) T protein:vir:93 334 FSSDKF--GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTEL------- 404 (472) T ss_pred CCcccc--ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeCCCCCCCHHH------- Confidence 433221 12333332 2333344556677777877665543 33322222333 56664332212222 Q ss_pred HHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCC Q lcl|Aclame:pro 419 RIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTE 498 (533) Q Consensus 419 R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (533) .++++..+..-++++++.+.+-..+| -.++-+.|++|..+..... .+ . .+.+++ T Consensus 405 ~~~~~~k~~giis~et~l~~l~~~~d-~~~E~~ri~~E~~~~~~~~-------~~------~------------~~~~~d 458 (472) T protein:vir:93 405 QVQTAQQSMGIVSHETVLENHPFVED-LQAELERIEQEQMEYNKQL-------PN------L------------DDGGAD 458 (472) T ss_pred HHHHHHHHhccCchHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHhc-------cC------c------------CcccCC Confidence 24455555667899999887776665 2222334444432111100 00 0 000010 Q ss_pred CCccCCCccCcCcccCCch Q lcl|Aclame:pro 499 GGEELGGELNLGGAFEEFE 517 (533) Q Consensus 499 ~~~~~~~~~~~~~~~~~~~ 517 (533) +.+ +++ ....++.+ T Consensus 459 ~~~--~~~---~~~~~~~e 472 (472) T protein:vir:93 459 GAQ--QQE---RSNNKESE 472 (472) T ss_pred CCC--CCC---CCCcccCC Confidence 000 000 00000000 No 165 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=97.53 E-value=5e-05 Score=44.19 Aligned_cols=410 Identities=11% Similarity=0.013 Sum_probs=190.2 Q ss_pred hhcccccccCcccCCCCcccCCCC-----Cccccchhh--cccccCccccchHH-------HHHHHHHHhhcChhHHHHH Q lcl|Aclame:pro 19 FLSPMYGMGAPHGAGGSSMIPINM-----YHPFATAGY--ASRFYGGIEFNRFF-------LYDMYDRMDYTDPLISTVL 84 (533) Q Consensus 19 ~~~~~~s~~~p~~~~gas~i~~~~-----~~~~~~~~~--~~~~ygg~~~n~~~-------li~~YR~m~~~~PEV~~AI 84 (533) +...+++- +| .+|+... ..-.++... .-..+|....+... .++.|++|. .|++|.+++ T Consensus 1 m~~~i~~~------~g-~p~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~iLr~~~~~~~~y~~m~-~D~~i~s~l 72 (491) T protein:vir:10 1 MSKGLWVS------PT-EFVTFGEPDKSLSSQIATRARSIDFFALGMYLPNPDPVLKALGKDIRVYRELR-ADAHVGGCV 72 (491) T ss_pred CCCceeCC------CC-CccCcccCChHHHHHHHhhhcccccccccCCccchHHHHHhcCCCHHHHHHHh-hChHHHHHH Confidence 11111111 11 1111000 000000000 00001111111111 267899987 699999999 Q ss_pred HHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCC--CCeeeeEEcCc Q lcl|Aclame:pro 85 DIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSD--GTIEKFQVVSP 162 (533) Q Consensus 85 d~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k--~gI~elr~ldP 162 (533) +.+..-+...+..-.|- -.+.+..+.+. ..++.+.|+..+.++.. -..+|-.+++++..... -.+.++...|| T Consensus 73 ~~Rk~av~~~~w~i~~~---~~~~~~~e~v~-e~l~~~~~~~~l~~~ld-a~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~ 147 (491) T protein:vir:10 73 RRRKAAVKALEWGLDRG---KAKSRVAKSIA-DVFADLDLSRIVTEMLD-AVLYGYQPMEITWGKVGNYIVPIDVVGKPA 147 (491) T ss_pred HHHHHHHhCCCcEEecC---CCCHHHHHHHH-HHHhcCCHHHHHHHHHH-hhhhcceeEEEEEeecCCeeEEEEeeeecc Confidence 99986654332221110 11112222222 23344688888888876 46699999999876432 23557888888 Q ss_pred ceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 163 YIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRV 242 (533) Q Consensus 163 ~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi 242 (533) +.+. ++..+.. .|.- ...+..+..+++...++++|..-.+. ++|.|.|..|..+|-..+......+.+=- T Consensus 148 ~~f~--~d~~~~l-~~~~------~~~~~~g~~l~~~k~i~~~~~~~~~~-p~g~gLl~~~~w~~~fK~~~~~~w~~f~E 217 (491) T protein:vir:10 148 DWFV--YDPENQL-RFRS------KDHWMQGEELPARKFLVPRQEATYLN-PYGFPDLSMCFWPTTFKKGGLKFWVQFTE 217 (491) T ss_pred ccee--eccCCce-EEec------CCCCCCcceecCCCEEEEEecCCCCC-cccchhHHHHHHHHHHHHHHHHHHHHHHH Confidence 8664 3443332 2211 12234567788999999999877765 89999999999999999988887776654 Q ss_pred hccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC- Q lcl|Aclame:pro 243 VRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG- 321 (533) Q Consensus 243 ~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG- 321 (533) .-+-.=|+..++-|.-.+.|. ..++.+ .... -| .+-| +| .|++|+.+.. T Consensus 218 ~yG~P~~igky~~~a~~~ek~-~l~~al-~~~~----~~--a~~v-----------------iP-----~~~~ie~~ea~ 267 (491) T protein:vir:10 218 KYGSPMLVGKHPRSASDGEKN-LLLDCL-EDMV----QD--AVAV-----------------VP-----DDSSIEIKEAA 267 (491) T ss_pred HcCCCeEEEecCCCCCHHHHH-HHHHHH-HHHh----cC--cEEE-----------------ec-----CCceeEEEecC Confidence 445555566666664222221 122222 2221 11 1111 11 3578887742 Q ss_pred CCCChH----HHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh-----hccCC Q lcl|Aclame:pro 322 SKVDLA----EDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMVR-----MNKEF 392 (533) Q Consensus 322 ~nlg~i----~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qLi-----lk~i~ 392 (533) +.-|.. .=++|..+++-+++-= .-|..+++.+++..-+-++ -+...++..++...+.|. ||| +++. T Consensus 268 ~~~g~~~~y~~li~~~d~~Isk~iLG--qtlTt~~~gs~a~~~vh~~-v~~di~~~D~~~i~~tln-~li~~l~~~N~~- 342 (491) T protein:vir:10 268 GKTGSADVYERLLHFCRGEVSIALLG--QNQTTEATSTRASAQAGLE-VTDDIRDGDKAVVSEAMN-MLIRWICDLNFD- 342 (491) T ss_pred CCCCChhHHHHHHHHHHHHHHHHHhh--hhcccCcccchhHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHhcCC- Confidence 222222 2289999998877532 2244444445543322223 345556666655555554 333 4433 Q ss_pred CccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccc Q lcl|Aclame:pro 393 ADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETT 472 (533) Q Consensus 393 t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~ 472 (533) ..+-.+|.|.... ...+.+.+++..|..+-==|.+.|+++.+. +.. ++.+++.. T Consensus 343 ~~~~p~f~~~~~~-----e~~~~~a~~~~~L~~~G~~i~~~~i~e~~G-ip~--------------------~~~~~~~~ 396 (491) T protein:vir:10 343 GADRPVFDMWEQE-----QVDEIQAGRDQKLTQAGARFTPAYFKRAYN-LQD--------------------GDLDERPL 396 (491) T ss_pred CCCcceEEecCcC-----chhHHHHHHHHHHHhCCCcCCHHHHHHHhC-CCC--------------------CCcCcccc Confidence 2334566664332 112344555555555422267778876653 221 11111110 Q ss_pred hhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCc---cc-C----------------CCCCCC Q lcl|Aclame:pro 473 PADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGG---EE-E----------------LPFPEE 532 (533) Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~-~----------------~~~~~~ 532 (533) | ...|+..-...+ ++ ..+..+...+..... .. + -.-++| T Consensus 397 ~----------~~~~~~~~~~~~---------~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~e 455 (491) T protein:vir:10 397 P----------VSAVDTVGAASF---------AE--FEAPDQDALDAALNTLSARDLNADAQALVAPLLKRIANGASADE 455 (491) T ss_pred c----------cCCCCCcccccc---------cc--cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH Confidence 0 000000000000 00 000000000000000 00 0 000000 Q ss_pred C Q lcl|Aclame:pro 533 E 533 (533) Q Consensus 533 ~ 533 (533) - T Consensus 456 ~ 456 (491) T protein:vir:10 456 L 456 (491) T ss_pred H Confidence 0 No 166 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=97.53 E-value=5e-05 Score=44.18 Aligned_cols=379 Identities=14% Similarity=0.155 Sum_probs=156.0 Q ss_pred HHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCC Q lcl|Aclame:pro 17 TNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNE 96 (533) Q Consensus 17 ~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~ 96 (533) =.|.+.++++-.+.. ..+.. .+....+ ++... +.+++..++-|.+||+.|++.+=.. T Consensus 1 Mg~~~~~~~~~~~~~----~~~~~--~~~~~~~------~~~~~---------~~~~~l~~~~v~~~v~~Ia~~ia~~-- 57 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQ----RTLNL--TDTVWCS------IPSEK---------LKELSIKKWAIDSCANKIANTLSCA-- 57 (395) T ss_pred CchHHHHHhhhcccc----ccccc--ccchhhc------ccccc---------chhhhhhhHHHHHHHHHHHHHHhhC-- Confidence 112222222211111 01111 1111100 01111 1123345688999999999864321 Q ss_pred CCceeeeecccccccHHHHHHHHHHhhh--------HHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEE Q lcl|Aclame:pro 97 NGNIVDVVTKDIELAKAILSYLDYVINI--------EKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKR 168 (533) Q Consensus 97 ~~~~v~v~l~~~e~s~si~~~i~~ll~f--------~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v 168 (533) |+.+--++ +.+...+..+|+. ....+..+..++.+|+.|..+.-+ +.+| ++. + + T Consensus 58 ---p~~~~~~~----~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~~--~~~~------~~~-~--~ 119 (395) T protein:vir:40 58 ---EVLTYEKG----EEVRKKNWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQDE--YIYV------ADS-F--T 119 (395) T ss_pred ---ceeeccCC----ccccchHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEecC--ceee------cCC-c--c Confidence 22221121 1223334455543 456677889999999999665432 1111 111 1 1 Q ss_pred eeccCcEEEEEecccceecccCC-cccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccc Q lcl|Aclame:pro 169 YNPETDTWYYVITDVYRNVVSGY-FNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVD 247 (533) Q Consensus 169 ~d~~g~~e~y~y~~~~~~~~~~~-~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPe 247 (533) +...... -+.|... ...+. ....+++.+|+|+..+..... +++.+.++.+... +..++-.++-. +-. T Consensus 120 ~~~~~~~-~~~~~~v---~~~~~~~~~~~~~~evih~r~~~~~~~-~~~~~l~~~~~~~------~~~~~~~~~~~-~~~ 187 (395) T protein:vir:40 120 KNDKSLY-ENTYTEV---TLKDLTLKKEFKESEVLHLTLNNESIK-SIIDGFYLLYGDL------LTAAVNKYKKL-NSR 187 (395) T ss_pred ccccccc-cceeeee---eecCceeeeeeccccEEEeecCCCCcc-ccchhHHHHHHHH------HHHHHHHHHhc-CCC Confidence 1111100 0111110 00111 123578899999975433221 3333333332221 22222233322 334 Q ss_pred ceeeecCCCCCchhhHHHHHHHHHHH-hhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC-CCC Q lcl|Aclame:pro 248 RRVFYVDVGNVPPDKINEYLTNIAMQ-YKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVD 325 (533) Q Consensus 248 Rr~fyidvGnlp~~kAeqy~~~im~~-~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg 325 (533) |....+.+...+..++.+-+++.+++ |+. . .++.|.+. +- ..|++++.|.-. .=. T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~-----------------vl---~~g~~~~~l~~~~~d~ 244 (395) T protein:vir:40 188 KIIVKLKAMFGQTPEAEEKLRLMLSERMKK-F--LAEGDSAL-----------------PV---EDGMEIDELAGDSKIA 244 (395) T ss_pred CceEEEecccCCCHHHHHHHHHHHHHHHHH-h--hccCCcee-----------------ec---CCCceEEeccCChhhh Confidence 66777776655555665555555544 321 0 11222221 11 134566666432 112 Q ss_pred hHHHHHHHH----HHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccceeEE Q lcl|Aclame:pro 326 LAEDVEYML----NRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDFRLV 400 (533) Q Consensus 326 ~i~Dv~Yf~----~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~~~ 400 (533) ++-+.+-|. ..+.+++|||.+.|+. + .+.+......|.+ -+.-+-.++.+.|.+.|+....... ...+. T Consensus 245 q~~e~~~~~~~~~~~Ia~~fgVPp~~l~~--~---~sn~e~~~~~f~~~~L~P~~~~ie~~l~~kLl~~~~~~~-g~~i~ 318 (395) T protein:vir:40 245 ESRDIKKMIDDVFEMVANSFNIPLGLAKG--D---TVGLSEQVNSFLMFSINPIAEMFTDEGNRKFYGRDSVLE-RTYMK 318 (395) T ss_pred hHHHHHHHHHHHHHHHHHHhCCCHHHhcC--C---CcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcC-CceEE Confidence 333344454 4788999999999963 2 2334444556665 6677777888888888764332211 11233 Q ss_pred ecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCcc Q lcl|Aclame:pro 401 MNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGER 480 (533) Q Consensus 401 f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~ 480 (533) |..+ ++.... ++.|.+.+..+- +..-||..|.= +.++-.++.. ++-|+ T Consensus 319 fd~~----~ll~~d-~~~~~~~~~~~~----------~~G~~t~NE~R-----~~~g~~pi~~-~~gD~----------- 366 (395) T protein:vir:40 319 LDTT----RIKVQD-IQEIASSMDVLF----------HIGVNTIDDNL-----RMIGREPVMS-PETQE----------- 366 (395) T ss_pred Eech----hhhccC-HHHHHHHHHHHH----------hCCCCCHHHHH-----HHhCCCCCCC-CCCce----------- Confidence 3322 333333 355555554421 23345643321 1122222210 11111 Q ss_pred CCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCc Q lcl|Aclame:pro 481 GSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGG 523 (533) Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 523 (533) ...|.+- ...+......-||+-| ..+ |.. T Consensus 367 ---~~~~~n~--~~~~~~~~~~kgge~~-------~~~--~~~ 395 (395) T protein:vir:40 367 ---RFVTKNY--APLGENEEDLKGGDIN-------ENK--GDS 395 (395) T ss_pred ---eeecccc--ccccccccccCCCCCC-------CCc--CCC Confidence 0111100 0011111111222211 000 111 No 167 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=97.42 E-value=7.2e-05 Score=43.30 Aligned_cols=425 Identities=12% Similarity=0.062 Sum_probs=188.6 Q ss_pred CCC-cchhhhhhh-HHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcCh Q lcl|Aclame:pro 1 MPS-LEKYKKLNE-AVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDP 78 (533) Q Consensus 1 ~~~-~~~w~k~de-~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~P 78 (533) ||+ |-.|=+-=. ....+.--+.+-++..+-... |.+.-.|.-.+..--..-+|+. ....+-|+.|...|+ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~~gltp~~l~~iLr~a~~gd~---~~~~~L~e~m~e~D~ 72 (526) T protein:vir:99 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQH-----PAKGLTPAKLARILVEAEQGNL---QAQAELFMDMEERDA 72 (526) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhccc-----CcCCCCHHHHHHHHHhhhCCCH---HHHHHHHHHHHhhCh Confidence 333 222211000 000000000010000000000 0000001000111111111222 344566777766799 Q ss_pred hHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh----hhHHHHHHHHHHHhhcCceeEEEeecCCC--C Q lcl|Aclame:pro 79 LISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI----NIEKNAYPIIRNMIKYGDMFLHILEKGSD--G 152 (533) Q Consensus 79 EV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll----~f~~~~~e~~R~wyvDGr~~~~kiid~~k--~ 152 (533) +|.++++.+..-+...+-.-.| .-.+....+.+.+.+.+.| +|+..+.+... -+-+|-.++.++.+... - T Consensus 73 ~i~s~l~~Rk~av~~~~w~I~p---~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ld-a~~~G~s~~Eivw~~~~g~~ 148 (526) T protein:vir:99 73 HLFAEMSKRKRAILGLDWAVEP---PRNASAAEKADADYLHELLLDLEGLEDLLLDALD-GIGHGYSCIELEWALQGREW 148 (526) T ss_pred HHHHHHHHHHHHHhCCCceEec---CCCCCHHHHHHHHHHHHHHhcccCHHHHHHHHHH-hhhhcceeEEEEEeecCCce Confidence 9999999998765533222111 1111122233334444443 57777777775 45589999999876432 2 Q ss_pred CeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 153 TIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRL 232 (533) Q Consensus 153 gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm 232 (533) .+.++...||+.++ ++..+.-. ..+. ..+..++.+++...+++.|..-.+. ++|.|.|..|.-+|-.-+. T Consensus 149 ~~~~l~~r~~~~f~--~~~~~~~~-l~~~------~~~~~g~~l~~~k~i~~~~~~~~g~-p~g~gLlr~~~w~~~fK~~ 218 (526) T protein:vir:99 149 MPLAFHHRPQSWFQ--LNPEDQNE-LRLR------DNSPAGEALQPFGWIIHRPRARSGY-VARSGLFRVLAWPYLFRHY 218 (526) T ss_pred eEEEeeeeccccee--eccCCCcE-EEec------CCCCCceeecCCCeEEEeecCCcCC-ccccchHHHHHHHHHHHHh Confidence 46677888887554 33333211 1121 1234456788889999998777775 7999999999999998888 Q ss_pred HHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCC Q lcl|Aclame:pro 233 MEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRR 312 (533) Q Consensus 233 ~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~ 312 (533) .....+.+=-.-.-.=|+..++.|+-.+.| ...++.+ ....+ | .+-| + .. T Consensus 219 ~~~~w~~f~E~yG~P~~igky~~~a~~~ek-~~L~~av-~~i~~----d--~~~i-----------------i-----P~ 268 (526) T protein:vir:99 219 ATSDLAEMLEIYGLPIRLGKYPPGTADEEK-ATLLRAV-TGLGH----A--AAGI-----------------I-----PE 268 (526) T ss_pred hHHHHHHHHHHcCCceEEEecCCCCCHHHH-HHHHHHH-HHHhh----C--cEEE-----------------e-----cC Confidence 777666665444555566666766432222 2222222 22211 1 1222 1 13 Q ss_pred cceeeecCCCCCC-h--HHHHHHHHHHHHHhc-CCCeeeccCCCC-ccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 313 AVEIDILQGSKVD-L--AEDVEYMLNRLISAL-KVPKAFIGYEGD-VNAKNTLATQDIKFNNTIKRIQGFFVEELERMVR 387 (533) Q Consensus 313 gtEi~TLpG~nlg-~--i~Dv~Yf~~kLy~aL-~VP~srl~~~~~-~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qLi 387 (533) |++|+.+..++-+ . ..=++|..+++-+++ |=-++--..+++ .+++..-+-+++ +...++...+.+.+.|.+||| T Consensus 269 ~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~g~~gS~a~g~vh~~v-~~di~~aDa~~i~~tln~~Li 347 (526) T protein:vir:99 269 TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLL 347 (526) T ss_pred CceeEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhccccccCcchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH Confidence 5677777633211 1 122889999988774 222211111111 222221122233 344455555555555555554 Q ss_pred -----hccCCC-ccce--eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHhcCChhhhHHHHHHhhhcc Q lcl|Aclame:pro 388 -----MNKEFA-DQDF--RLVMNRSNSIVEGERFAVIEQRIGIAERLKGW-VREDWIYSNILQIPYDLKPQEEVAEAAGG 458 (533) Q Consensus 388 -----lk~i~t-~eew--~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~py-vgk~~i~k~il~~tde~~~q~~~i~~E~~ 458 (533) ++.... +..+ ++.|.. .|-.+...+.+++..|..+ .| |+++|+++++.- .. T Consensus 348 ~~l~~~N~~~~~~~~~~p~~~~~~----~e~eDl~~~a~~~~~L~~~-G~~i~~~~i~e~~Gi-p~-------------- 407 (526) T protein:vir:99 348 WPLLVLNRPGSPDVRRAPRLVFDL----REQADITSMAQSIPALVNV-GLEIPSAWVYDKLGI-PQ-------------- 407 (526) T ss_pred HHHHHhCCCCcCCccccceEEeCC----CCcccHHHHHHHHHHHHhC-CCccCHHHHHHHhCC-CC-------------- Confidence 443222 1122 233321 1233334455566666554 33 778888877632 11 Q ss_pred cCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 459 GGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) +..++++- +....|...+..+ +. ...++ .. ...+..|... T Consensus 408 ------~~~~e~~l-----~~~~~~~~~~~~~--------~~----~~~~~----~~--------~~~~~~~~~~ 447 (526) T protein:vir:99 408 ------PAKNEPVL-----RSAAQPAILSRQH--------GQ----RVAAL----AT--------IVGPRYGDQQ 447 (526) T ss_pred ------CCCccccc-----CCCCCCccccccc--------cc----ccccc----cc--------cccccCcchh Confidence 11111111 1111110000000 00 00000 00 0000011111 No 168 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=97.41 E-value=7.3e-05 Score=43.27 Aligned_cols=428 Identities=10% Similarity=0.082 Sum_probs=175.1 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccc---cCcc------cCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGM---GAPH------GAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYD 71 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~---~~p~------~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR 71 (533) .| |...+...+.+.+..+|..- ..|. -.+|-+.|+. .+ ..+.....+..+ T Consensus 4 ~p----~~~l~~~~~~~~~~~~l~~~~~~~~~r~~~~~~YY~g~~~i~~---~~--------------~~~~~~~~~~~~ 62 (479) T protein:vir:99 4 LP----DEDLSSEGLAKYLETKVFPKMNTECERLDDFEAWTKNGQEVPD---LA--------------TRHKNKEREVLQ 62 (479) T ss_pred CC----cccCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcccc---cc--------------cccCChhHHHHH Confidence 34 33333333333222222111 0111 1222222210 00 011112233333 Q ss_pred HHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEee--c- Q lcl|Aclame:pro 72 RMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILE--K- 148 (533) Q Consensus 72 ~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kii--d- 148 (533) .+. .+.-+.-+|+..++-+.. ..+...+.+..+. ...+...=+|+....+.++..+++|+.|...-- + T Consensus 63 ~~~-~~n~~~~iVd~~~~~l~~-------~gf~~~d~~~~~~-~~~i~~~N~~d~~~~~~~~~a~~~G~af~~v~~~~~~ 133 (479) T protein:vir:99 63 QLS-RKPWMGLMVNSFAQQLIV-------DGYRKTGTNENAK-GWDTWRLNQMDKQQFWLNRAVLTFGYAFIKVTSGISP 133 (479) T ss_pred HHh-hcCcHHHHHHHHHhhccc-------ccccCCCchhhHH-HHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCC Confidence 322 234667788877765532 1223333332222 233334346888999999999999998876542 1 Q ss_pred CCCCCeeeeEEcCcceeeEEeeccCcEE---------------EEEecccceec-ccC------CcccccCcccEEEEec Q lcl|Aclame:pro 149 GSDGTIEKFQVVSPYIFSKRYNPETDTW---------------YYVITDVYRNV-VSG------YFNEDIPEEDVIHFSH 206 (533) Q Consensus 149 ~~k~gI~elr~ldP~~ik~v~d~~g~~e---------------~y~y~~~~~~~-~~~------~~~~~~~~~dvi~~~~ 206 (533) ....|...++.+||+.+..+++..+... +|..+....+. ..+ ...+.+..=-+++|.+ T Consensus 134 ~d~~g~~~i~~~~p~~~~~iydd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n 213 (479) T protein:vir:99 134 LDGTTVARIKCIDPRDAFAIWEDPYWDEWPKYLLERQPNGQYWWWTEEDYSIFEFKQGKFIYRETVSHDYGHIPFVRYVN 213 (479) T ss_pred cCCCCceEEEEechhheEEEecCCcccceeeEEEeecCceeEEEEecceEEEEEecCCceeeccccccCCCCcceEEeec Confidence 1245777899999999988875544321 12111111110 111 1112222234677776 Q ss_pred CcccCcccccchhHHHHHHHHHHHH-HHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCC Q lcl|Aclame:pro 207 KIDTNFFPYGRSYLESARAIWNQLR-LMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQN 285 (533) Q Consensus 207 ~~~~d~~~~g~s~L~~Aik~~NqLr-m~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tG 285 (533) +-..+ ++|.|-|+..+.....+- .+-+...+-.....|.+-++ ...++..... ....+ +. ..+ T Consensus 214 ~~~~~--~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~---G~~~~~~~~~--~~~~~-----~~----~~~ 277 (479) T protein:vir:99 214 VMDLR--GVCYGDVEPLVTVAKAIDKTGLDILLVQHHQSFQIRWAT---GLMLPEGANA--DQEKM-----RF----AQE 277 (479) T ss_pred CCCcC--cCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhc---CCCccccccc--chhcc-----cc----ccc Confidence 54322 356665555443333321 22233333333334443322 2122210000 00000 00 000 Q ss_pred eeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChH-HHHHHHHHHHHHhcCCCeeeccCCCCccchh--hhhH Q lcl|Aclame:pro 286 QFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLA-EDVEYMLNRLISALKVPKAFIGYEGDVNAKN--TLAT 362 (533) Q Consensus 286 ei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~--eI~r 362 (533) . .|.. .+.+.++-++++.++... +-++=+-..+...-++|..-|+.. +++| .|-- T Consensus 278 ~----------------i~~~---~~~~~~~~q~~~~~~~~~~~~l~~~i~~i~~~t~~p~~~~g~~---~n~Sg~Al~~ 335 (479) T protein:vir:99 278 S----------------MLIS---QNEKASFGAIPAAPLDGLLNAYKESLLEFLALAQLPPHIAGQI---VNVAADALAA 335 (479) T ss_pred c----------------ceee---cCCCceEEEecccchHHHHHHHHHHHHHHhccCCCCHHHcccc---cchHHHHHHH Confidence 0 1111 123456777776655432 334444456666667887766532 2222 2322 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh----hhccCCC-ccce--eEEecCCcHHHHHHHHHHHHHHHHHHHHh--hhhhhHH Q lcl|Aclame:pro 363 QDIKFNNTIKRIQGFFVEELERMV----RMNKEFA-DQDF--RLVMNRSNSIVEGERFAVIEQRIGIAERL--KGWVRED 433 (533) Q Consensus 363 de~kF~kfI~rLr~~F~~~l~~qL----ilk~i~t-~eew--~~~f~~dn~f~E~ke~ei~~~R~~~~~~~--~pyvgk~ 433 (533) .+.....-+.+.|+.|..-|++-+ .+.|.-. .+++ .+.|.....=.. .+..+.+.+| .+-++.. T Consensus 336 ~~~~l~~ka~~~~~~f~~al~~~~~l~~~~~~~~~~~~~~~i~~~w~~~~~~s~-------~~~ad~~~kl~~ag~is~e 408 (479) T protein:vir:99 336 GTRQTMQKLFEKQATWKASHNQTMRLVNKIEGRTEEATDLDFTITWQDVTIQSL-------AQFADAWAKMVESLKIPAE 408 (479) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceeeeEEecCCCCCCH-------HHHHHHHHHHHhcCCCCHH Confidence 333345567777777776554432 2344332 2333 345533222111 2233344433 2568999 Q ss_pred HHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccc-cCCCCCccCCCccCcCcc Q lcl|Aclame:pro 434 WIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFD-FGTEGGEELGGELNLGGA 512 (533) Q Consensus 434 ~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 512 (533) ++.+.+...++++++.-+.++++... .+.........+.....-..+.+.++.+ .+..+++ + -.+|.- T Consensus 409 t~l~~l~gv~~~~~e~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~-- 477 (479) T protein:vir:99 409 GVWDMIPNLDQSTVNGWKEIYDREGD-------FGKYMRKLQNGPDPAEQRGGPNGATNMQQANNKTGE-P-ASLNKS-- 477 (479) T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHH-------HHHHHHHHhcccCcccccCCCCCCCCCCCCCCCCcc-h-hccCCC-- Confidence 99999988888655432222221110 0000000000000000000111111111 1111111 0 011222 Q ss_pred cCCchhhcCC Q lcl|Aclame:pro 513 FEEFEEETGG 522 (533) Q Consensus 513 ~~~~~~~~g~ 522 (533) || T Consensus 478 --------~~ 479 (479) T protein:vir:99 478 --------GA 479 (479) T ss_pred --------CC Confidence 22 No 169 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=97.41 E-value=7.3e-05 Score=43.25 Aligned_cols=356 Identities=14% Similarity=0.072 Sum_probs=153.4 Q ss_pred HHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCC Q lcl|Aclame:pro 17 TNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNE 96 (533) Q Consensus 17 ~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~ 96 (533) =.+-.++.||+.. ..+.+ ....++ .++.. .+.+.+-|.++|+.|++.+=.. T Consensus 1 Mg~f~~~~~f~~~-------~~~~~--~~~~~~----------~~~~~--------~~~~~~~v~~~i~~Ia~~iA~l-- 51 (378) T protein:vir:93 1 MNLFGKVVSFSRG-------KLNND--TQRVTA----------WQNEA--------VEYTSAFVTNIHNKIANEITKV-- 51 (378) T ss_pred Cccchhhhhhhcc-------ccCCC--cceeee----------cccch--------hHHHHHHHHHHHHHHHhhhhhC-- Confidence 1111122222211 11111 000111 11110 1123456889999999773321 Q ss_pred CCceeeeec-cccc-c----cHHHHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCc Q lcl|Aclame:pro 97 NGNIVDVVT-KDIE-L----AKAILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSP 162 (533) Q Consensus 97 ~~~~v~v~l-~~~e-~----s~si~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP 162 (533) |+.+-. ++.. . ...+...+.+||+ -....+..+..++.+|+.|.+++.+...+ ++.++-| T Consensus 52 ---p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g---~~~~l~~ 125 (378) T protein:vir:93 52 ---EFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTG---ELLDLLF 125 (378) T ss_pred ---ceeeEEEcccccccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCc---eEEEEEe Confidence 211110 0000 0 0011233455554 34577778889999999999887754321 2322222 Q ss_pred ceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 163 YIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRV 242 (533) Q Consensus 163 ~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi 242 (533) . ..+..+++++|+|+.... . +..|+|.|+.|+..+.. + . T Consensus 126 ~---------------------------~~~~~~~~~diih~r~~~-~--~~~~~s~l~~~~~~i~~------~-----~ 164 (378) T protein:vir:93 126 A---------------------------DDKKEYKTEELVRLTSPF-Y--INEDTSILDNALASIQT------K-----L 164 (378) T ss_pred c---------------------------CCeeEeccceeEEecCcc-c--cchhhHHHHHHHHHHHH------H-----H Confidence 1 122346778999997432 1 23577888877655432 1 1 Q ss_pred hccccceeeecCCC-CCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC Q lcl|Aclame:pro 243 VRSVDRRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG 321 (533) Q Consensus 243 ~RAPeRr~fyidvG-nlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG 321 (533) ..+-.+- ++.+. .+-+..+++....+...|++..--+.+ |.+ + .+ ..|.+++.|.= T Consensus 165 ~~~~~~g--~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~-~l----------~~g~~~~~l~~ 221 (378) T protein:vir:93 165 EQGKLRG--LLKINAFLDIDNTQEYREKALTTIKNMQEGSSY-NGL---------T-PV----------DNKTEIVELKK 221 (378) T ss_pred hcCcccc--eeeeCCcCCHHHHHHHHHHHHHHHHHhhccccc-ccc---------e-Ec----------CCCceEEEccC Confidence 1222222 33333 444444455555555555543222222 211 1 11 23456666532 Q ss_pred C-CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhcc-----CCCc Q lcl|Aclame:pro 322 S-KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNK-----EFAD 394 (533) Q Consensus 322 ~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~-----i~t~ 394 (533) . ..-+++..+|..+.+.+++|||.+.|.. ..++ .+-.-|.++ |.-+-+++.+.|.+.|+... .... T Consensus 222 ~~~~~~~~~~~~~~~~Ia~~fgVPp~~l~g-----~~~e--~~~~~f~~~tl~P~~~~ie~~l~~kLl~~~er~~~~~~~ 294 (378) T protein:vir:93 222 DYSVLNKDEIDLIKSELLTGYFMNENILLG-----TATQ--EQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNL 294 (378) T ss_pred ChhhhhHHHHHHHHHHHHHHhCCCHHHhcC-----CcHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhcc Confidence 2 2235677899999999999999999852 1122 122335443 45556667777877776432 1111 Q ss_pred cceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchh Q lcl|Aclame:pro 395 QDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPA 474 (533) Q Consensus 395 eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~ 474 (533) -.+++.|..+.. ... -+..|.+++..+ -+..-||..|.-. .++-.++ ++-|+-..+ T Consensus 295 ~~~~~~fd~~~l----~~~-d~~~~~~~~~~~----------~~~G~~t~NE~R~-----~~gl~p~---~ggD~~~~~- 350 (378) T protein:vir:93 295 YYERIIVDNQLF----KFA-TLKELIDLYHEN----------INGPIFTQNQLLV-----KMGEQPI---EGGDVYIAN- 350 (378) T ss_pred cccceeeccchh----hhc-CHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCC---CCCCeeeec- Confidence 122344432222 111 123455544432 2334566533321 1222222 221211111 Q ss_pred hhcCccCCcccccCCCcccccCCCCCccCCCccCcC Q lcl|Aclame:pro 475 DFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLG 510 (533) Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (533) .-..|++.+...... ..++..++|-|=+ T Consensus 351 ----~n~~~~~~~~~~~~~----~~~~~~~~e~~n~ 378 (378) T protein:vir:93 351 ----LNAVAVKNLSDLQGS----RKDVTSTDETNNQ 378 (378) T ss_pred ----cccccccchhhhcCc----cCCCCCCCCCCCC Confidence 111122222111101 1111111221111 No 170 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=97.37 E-value=8.3e-05 Score=42.95 Aligned_cols=395 Identities=11% Similarity=0.021 Sum_probs=156.7 Q ss_pred hcccccccCcccCCCCcccCCCCCccccchhhcccccCcc-ccchHHH-----------HHHHHHHhhc----------- Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGI-EFNRFFL-----------YDMYDRMDYT----------- 76 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~-~~n~~~l-----------i~~YR~m~~~----------- 76 (533) |++. --.+|-..-+. .|..+-.....|+... ..+..++ +.+|+.+... T Consensus 1 ~~~~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~~ 71 (483) T protein:vir:12 1 MAQA------LIKGGNILYPS---QPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 71 (483) T ss_pred Cccc------hhcCCceeecC---cchhhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc Confidence 2221 11223211111 2222222222332211 1122222 2233332221 Q ss_pred -------------------ChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh--hhHHHHHHHHHHH Q lcl|Aclame:pro 77 -------------------DPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI--NIEKNAYPIIRNM 135 (533) Q Consensus 77 -------------------~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll--~f~~~~~e~~R~w 135 (533) ++-+.-+|+..+... -+.|+.+..++.+..+ .+...+ +|+.+..+.++.. T Consensus 72 ~~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l-----~G~p~~~~~~d~~~~~----~l~~~~~n~~~~~~~~~~~~~ 142 (483) T protein:vir:12 72 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYI-----VGKPIAFKHTDDEVVK----RIDEVLGNRFDDKLHSVLTGA 142 (483) T ss_pred ccccccccccccccccccccchHHHHHHHHhhhh-----cccCceeccCChHHHH----HHHHHHhccHHHHHHHHHHHH Confidence 111122222222211 1456666655533333 233333 6889999999999 Q ss_pred hhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeecc--CcEEEEE-------------ecccc--eecccCCc------ Q lcl|Aclame:pro 136 IKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPE--TDTWYYV-------------ITDVY--RNVVSGYF------ 192 (533) Q Consensus 136 yvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~--g~~e~y~-------------y~~~~--~~~~~~~~------ 192 (533) ++.|+.|.+...|. +|-..++.++|+.+-++++.. ++..+++ |+... .+...++. T Consensus 143 ~~~G~~y~~v~~d~--d~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~ 220 (483) T protein:vir:12 143 SNKGIEWLHPYLDE--EGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYS 220 (483) T ss_pred hhCCeEEEEEEEcC--CCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeecceEEEEEecCeEEEEEEeCCeeeeccc Confidence 99999999988763 455579999999999998743 2221111 11110 00000000 Q ss_pred -c----------cccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHH-HHHHHHHHHHhccccceeeecCCCCCch Q lcl|Aclame:pro 193 -N----------EDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRL-MEDALMLYRVVRSVDRRVFYVDVGNVPP 260 (533) Q Consensus 193 -~----------~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm-~EdalVIyRi~RAPeRr~fyidvGnlp~ 260 (533) . +.+..=.++.|.- .+.|.|-++..+....-|-. +=+-...-+-++-|-+-+.-.+.-+. T Consensus 221 ~~~~~~~~~~~~~~~g~vPvv~~~n------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~-- 292 (483) T protein:vir:12 221 NNLENSKTHFSTGSWGKIPFIPFKN------NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTNYDDQEL-- 292 (483) T ss_pred ccccccccccccCCCCccceEEecC------CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccc-- Confidence 0 0000001222211 13566666654444433332 22222222334444222211111111 Q ss_pred hhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC-CCCCh-HHHHHHHHHHHH Q lcl|Aclame:pro 261 DKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG-SKVDL-AEDVEYMLNRLI 338 (533) Q Consensus 261 ~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG-~nlg~-i~Dv~Yf~~kLy 338 (533) .+..+. + ..++...-+++. .+++|-. .+... ..-+.-+.+.+| T Consensus 293 ---~~~~~~-~-----------------------------~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~l~~~I~ 337 (483) T protein:vir:12 293 ---PEFKRL-L-----------------------------RYYGAIKVSDNG--GVDTIQVEVPVENSKKYLDELYQKIM 337 (483) T ss_pred ---hhHHHh-h-----------------------------hhccccccCCCC--cceEEeecCCHHHHHHHHHHHHHHHH Confidence 111111 1 111111111111 2333322 13322 233677788899 Q ss_pred HhcCCCeeeccCCCCccchhhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--hhccCCCccce---eEEecCCcHHHHHH Q lcl|Aclame:pro 339 SALKVPKAFIGYEGDVNAKNTLAT--QDIKFNNTIKRIQGFFVEELERMV--RMNKEFADQDF---RLVMNRSNSIVEGE 411 (533) Q Consensus 339 ~aL~VP~srl~~~~~~gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--ilk~i~t~eew---~~~f~~dn~f~E~k 411 (533) ...++|---.+. ..|+.+..+. -+.....-+.+.++.|...|+.-+ |++-.--..+| ++.|.+..--.+.. T Consensus 338 ~~s~~p~~~~~~--~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~li~~~~~~~~~~~~i~v~f~~~~p~~~~~ 415 (483) T protein:vir:12 338 LFGQAVDFSSDK--FGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTEL 415 (483) T ss_pred HHhCCCCCCccc--cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccceeeEEeCCCCCCCHHH Confidence 999999533321 1133333332 233334455666667776666543 22221112333 56665433322222 Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCc Q lcl|Aclame:pro 412 RFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRT 491 (533) Q Consensus 412 e~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (533) . ++++..+.+-+|+.++.+.+-..+| -.++-+.|++|..+.....+.. .+...++ .+ . T Consensus 416 ~-------a~~~~kl~GiiS~et~~~~~~~v~d-~~~E~~ri~~E~~~~~~~~~~~---------~~~~~d~--~~---~ 473 (483) T protein:vir:12 416 Q-------VQTAQQSMGIVSHETVLENHPFVED-LQAELERIEQEQMEYNKQLPNL---------DDGGADG--AQ---Q 473 (483) T ss_pred H-------HHHHHHHhccCchHHHHHhCCCCCC-HHHHHHHHHHHHHHHHhhcccc---------cccccCC--cc---c Confidence 2 3445555667999999887766654 1122233444432111110000 0000000 00 0 Q ss_pred ccccCCCCCccCCCccCcCcccCCchh Q lcl|Aclame:pro 492 EFDFGTEGGEELGGELNLGGAFEEFEE 518 (533) Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (533) ..+.+. + +.+ T Consensus 474 ~~~~~~---~--------------e~e 483 (483) T protein:vir:12 474 QERSNN---K--------------ESE 483 (483) T ss_pred CCCCCc---c--------------cCC Confidence 000000 0 000 No 171 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=97.35 E-value=8.6e-05 Score=42.86 Aligned_cols=392 Identities=11% Similarity=0.002 Sum_probs=157.5 Q ss_pred hcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhh-c---------------------- Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDY-T---------------------- 76 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~-~---------------------- 76 (533) |.+.+.=-.|.-- ...|+.-.+....+.-.-..+. ....++...++++++-+. . T Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~i-~~~~~~~~~~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~~~ 77 (468) T protein:vir:96 1 MIDIFWPNEKPYH--ERVVEQIKPQYETQEEMILRLI-TKHKENVEDITVGERYYNHQPDVLFNAPKRNVKGEIDPFKPD 77 (468) T ss_pred CccccCCcCceee--hheeecccccccCcHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccc Confidence 3222211111100 0001100000000000000000 000011111111111111 0 Q ss_pred ----ChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh--hhHHHHHHHHHHHhhcCceeEEEeecCC Q lcl|Aclame:pro 77 ----DPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI--NIEKNAYPIIRNMIKYGDMFLHILEKGS 150 (533) Q Consensus 77 ----~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll--~f~~~~~e~~R~wyvDGr~~~~kiid~~ 150 (533) ++-+...++..+...+ +.|+.+..++.+.. +.|...+ +|..+..+.++..++.|+.|++...|. T Consensus 78 ~ki~~n~~~~Iv~~~~~~l~-----g~p~~~~~~d~~~~----~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~- 147 (468) T protein:vir:96 78 WRMYTNYHQNLVDQKVAYAV-----ANPVTYGTEDEKSL----KTIQEVLNHKWDDKLVDILTAASNKGVEWIQPYVDE- 147 (468) T ss_pred cccccchHHHHHHHHHhhhc-----cCCceeccCChHHH----HHHHHHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcC- Confidence 2223333333332222 45666666653332 2333333 688899999999999999999987753 Q ss_pred CCCeeeeEEcCcceeeEEeecc--CcEEEEE-------------ecccc--eecccCCc--------------------- Q lcl|Aclame:pro 151 DGTIEKFQVVSPYIFSKRYNPE--TDTWYYV-------------ITDVY--RNVVSGYF--------------------- 192 (533) Q Consensus 151 k~gI~elr~ldP~~ik~v~d~~--g~~e~y~-------------y~~~~--~~~~~~~~--------------------- 192 (533) +|-..+..++|+.+-++++.. ++..+++ |+... .+...++. T Consensus 148 -~~~~~i~~~~p~~~~~v~~~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (468) T protein:vir:96 148 -QGEFKTFRVPAEQAIPIWTNKERDELKAFIRLYELDGGERVEYWTANDVTFYELKDGQLIPDYYQGEEHVQAHYYVGNK 226 (468) T ss_pred -CCceEEEEEcccceEEEEcCCCCCceEEEEEEEEecCceEEEEEeCCeEEEEEEcCCceeecccccccccccceeeccc Confidence 455679999999998888643 3322222 11110 00000000 Q ss_pred ccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHH-HHHHHHhccccceeeecCCCCCchhhHHHHHHHHH Q lcl|Aclame:pro 193 NEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDA-LMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIA 271 (533) Q Consensus 193 ~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Eda-lVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im 271 (533) .+.+..=.+++|.. .+.|.|-|+.++....-|-++=-. .-.-+-.+.|-+ ++....+ ...++.+.. + T Consensus 227 ~~~~~~iPvv~~~n------~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~l---v~~g~~~--~~~~~~~~~-~ 294 (468) T protein:vir:96 227 SMSWNRVPFIPFKN------NPQEVSDLFMYKTIIDAMDKRLSDTQNTFDEATELIY---VLKGYEG--EDLEEFMYN-L 294 (468) T ss_pred cccCCcccEEEecC------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcee---eeecCCc--cccchhhhh-h Confidence 00000001222211 245777777755555544433222 222233334422 2221111 000111111 1 Q ss_pred HHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChH-HHHHHHHHHHHHhcCCCeeeccC Q lcl|Aclame:pro 272 MQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLA-EDVEYMLNRLISALKVPKAFIGY 350 (533) Q Consensus 272 ~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~ 350 (533) ..++ -++++- +++.+.+.-|.+. +.... .-++-+.+.+|...++|- +.. T Consensus 295 ~~~~--------------------------~i~~~~-d~~~~~~~l~~~~-~~~~~~~~~~~l~~~I~~~s~~p~--~~~ 344 (468) T protein:vir:96 295 KYYK--------------------------AINVDG-DGSGGVDTIQIDV-PVQSAKEYLDMLRDYVIEFGQGVD--FQQ 344 (468) T ss_pred hcCc--------------------------eEEecC-CCCCcceEEeecC-ChHHHHHHHHHHHHHHHHHhCccc--ccc Confidence 1110 012221 2222223333222 33222 337888999999999995 332 Q ss_pred CCCccchhhhhH--HHHHHHHHHHHHHHHHHHHHhhh--hhhc--c-CCCccceeEEecCCcHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 351 EGDVNAKNTLAT--QDIKFNNTIKRIQGFFVEELERM--VRMN--K-EFADQDFRLVMNRSNSIVEGERFAVIEQRIGIA 423 (533) Q Consensus 351 ~~~~gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~q--Lilk--~-i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~ 423 (533) +...|+.|..+. .......-+.+.+..|.+.|+.- ||++ | -....+..+.|...---.+...+++ + T Consensus 345 ~~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~~d~~~i~i~f~~~~p~d~~e~a~~-------~ 417 (468) T protein:vir:96 345 DKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLSIKVQDVEITFNFNVMVNELEQSQI-------G 417 (468) T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecCCCCcCHHHHHHH-------H Confidence 222234444333 11112334555666677666553 2332 2 2233445677764444333333332 3 Q ss_pred HHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcc Q lcl|Aclame:pro 424 ERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPI 484 (533) Q Consensus 424 ~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (533) .++ +.+|+.++.+.+-..+| -.++-++|++|..+....+++ .+.++--.|. T Consensus 418 ~~~-g~iS~et~i~~l~~v~D-~~~E~~ri~~E~~~~~~~~~~--------~~~~~~~~~~ 468 (468) T protein:vir:96 418 VNS-QYLSKETVVTNHPWVDD-PVAEMERIDQEELALPSIEEG--------LNGKENNEPT 468 (468) T ss_pred Hhc-CCCchHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHhhc--------cCCCCCCCCC Confidence 332 68899998876544444 233345555554322111111 1112222221 No 172 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=97.34 E-value=9e-05 Score=42.77 Aligned_cols=340 Identities=11% Similarity=0.091 Sum_probs=149.3 Q ss_pred CCC-cchhhhhhhHHHHHHhhcccccccCcccCCCCccc------------------------CCCCC---ccccchhhc Q lcl|Aclame:pro 1 MPS-LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMI------------------------PINMY---HPFATAGYA 52 (533) Q Consensus 1 ~~~-~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i------------------------~~~~~---~~~~~~~~~ 52 (533) ||+ =.+=+-.-|.- .-.+.+...-|+..+.-..++.. |.-.. ..-.....+ T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fg~p~~v~~~~~~~~~~~~~~~ 79 (376) T protein:vir:10 1 MPARDRPRAARRRRH-SFIFIHGVLRMSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSN 79 (376) T ss_pred CCCCccchhhhhhcc-cchhhcccccchhccCCCcccchhhhhHhhhccCcceeEEEEcCCceeccCcchhhhhhhhhhc Confidence 554 11111111100 11122222222211111111000 10000 000011112 Q ss_pred ccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHH Q lcl|Aclame:pro 53 SRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPII 132 (533) Q Consensus 53 ~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~ 132 (533) +.+|..-+ +...|-+-+|. .|...+||---+|... +++- -+.-++.. .| ...+ T Consensus 80 ~~~~~pp~-~~~~La~~~~~----~~~h~s~l~~k~n~l~-~~~~--------Pnp~lT~~---------~f----~~~v 132 (376) T protein:vir:10 80 GEWFEPPV-SFAGLAKSFRA----STHHSSALFFKANVLA-STFR--------PHRWLSRH---------AF----ERWA 132 (376) T ss_pred CceecCCC-CHHHHHHHHhh----hHHhhhhHHHHhHHHH-hccC--------CCCCCCHH---------HH----HHHH Confidence 22222222 33345555552 2444566655444321 1110 01112221 12 3456 Q ss_pred HHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCc Q lcl|Aclame:pro 133 RNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNF 212 (533) Q Consensus 133 R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~ 212 (533) ..+++.|+.|+.++.+. .+.+.+|..|+|.+|++..+..+ .+|+.. ++....+++.+|+|+-.-.+.+ T Consensus 133 ~d~ll~Gnay~~~~rn~-~G~~~~L~pl~~~~vr~~~d~~~--~~~~~~--------~~~~~~~~~~eViHir~~~~~~- 200 (376) T protein:vir:10 133 LDFLTFGNGYLERRRNM-VGGTLRLEPALAKYVRRKADFNG--FVYVNG--------WQERHEFEPDSVFQLVRPDINQ- 200 (376) T ss_pred HHHHhcCCeEEEEEECC-CCCEEEEEEeCCcceEEEeeCCe--EEEEEc--------CCeEEEEccccEEEecCCCCCC- Confidence 67889999999988764 46699999999999988877543 333221 2344568899999996432222 Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHH--Hhc--cccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeee Q lcl|Aclame:pro 213 FPYGRSYLESARAIWNQLRLMEDALMLYR--VVR--SVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFL 288 (533) Q Consensus 213 ~~~g~s~L~~Aik~~NqLrm~EdalVIyR--i~R--APeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~ 288 (533) +-||+|-+..|+..+.. -.+.-.|| ... |-..-|+|+.-.++ ..++.+-+++-+++++- + .+.|. T Consensus 201 ~~yGls~~~~a~~si~l----~~aa~~f~~~~f~NGa~pggIl~~~d~~l-~~e~~~~lr~~~~~~~G--~--~N~~~-- 269 (376) T protein:vir:10 201 EVYGLPEYLSSLHSAWL----NESSTLFRRKYYENGSHAGFILYMTDAAQ-KQDDVDNMRDALKNAKG--P--GNFRN-- 269 (376) T ss_pred CcccccHHHHHHHHHHH----HHHHHHHHHHHHhccCCCceEEEecCCCC-CHHHHHHHHHHHHHhcC--c--cccCc-- Confidence 34999988887776543 33333443 211 22234555532344 34444455555544321 0 00111 Q ss_pred cccccchhhhHHhhhhcccccCCCcceeeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCC-ccchhhhhHHHH Q lcl|Aclame:pro 289 GIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGD-VNAKNTLATQDI 365 (533) Q Consensus 289 d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~-~gr~~eI~rde~ 365 (533) +-+ +.--....|.++.-|.-. .+.=++=-++-.+.+.++.+||...++.-++ .+..+.+.-... T Consensus 270 --------~~v-----l~~~g~~~Gi~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~eq~~~ 336 (376) T protein:vir:10 270 --------VFM-----YAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAAR 336 (376) T ss_pred --------eeE-----ecCCCCccceEEEEccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHH Confidence 111 100011235566644211 1111111334456699999999999986432 222233444444 Q ss_pred HHHH-HHHHHHHHHHHHHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 366 KFNN-TIKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGI 422 (533) Q Consensus 366 kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~ 422 (533) -|.+ -|.-|+++|.++. ..|. +++ + ++...++++.=... T Consensus 337 ~f~~~~L~Pl~~~ieeln-~~L~-------~~~-~---------~F~~~~Llr~d~ka 376 (376) T protein:vir:10 337 VFGRNEIRPLQARFAELN-DWLG-------EEV-V---------RFDDYEIPPAPVAA 376 (376) T ss_pred HHHHHHHHHHHHHHHHHH-hhcc-------ccc-c---------ccChhHhhcccccC Confidence 5553 5677777776532 2221 111 2 22222332221111 No 173 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=97.33 E-value=9.3e-05 Score=42.69 Aligned_cols=390 Identities=16% Similarity=0.119 Sum_probs=167.9 Q ss_pred CCC-cchhhhhhhHHHHH--HhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHH--hh Q lcl|Aclame:pro 1 MPS-LEKYKKLNEAVNFT--NFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRM--DY 75 (533) Q Consensus 1 ~~~-~~~w~k~de~~~~~--~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m--~~ 75 (533) -|. ..-|.+.=-..... .-+..+.. -.+|.+.|+. -+ .+ .-..||.. .. T Consensus 2 ~~~t~~~~~~~l~~~~~~~~~r~~~l~~-----Yy~g~~~i~~---~~---------------~~---~~~~~~~~~~~~ 55 (456) T protein:vir:79 2 TASTPAEWLPVLTKRIDDGMSRVRLLAR-----YSNGDAPLPE---LT---------------RN---TSAAWRSFQREA 55 (456) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHhccCChhh---cC---------------cc---cChhhchhhhhh Confidence 222 22232211111000 00111111 1233222210 00 00 01122211 11 Q ss_pred cChhHHHHHHHhhceeeecCCCCceeeeec-ccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCe Q lcl|Aclame:pro 76 TDPLISTVLDIIADECTIPNENGNIVDVVT-KDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTI 154 (533) Q Consensus 76 ~~PEV~~AId~Ivneaiv~d~~~~~v~v~l-~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI 154 (533) .+.-+..+|+..+..+++ +++.+.. ++.+..+. ...+...-+|+....+.++..+++|+.|.+.-.+. +|- T Consensus 56 ~~n~~~~ivd~~~~~l~~-----~g~~~~~~~d~~~~~~-~~~~~~~n~~d~~~~~~~~~a~~~G~a~~~~~~~e--dg~ 127 (456) T protein:vir:79 56 RTNWGLMVRDSVADRIIP-----NGITVGGSADSDLALR-ARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD--DGT 127 (456) T ss_pred hcchHHHHHHHHHhhhcc-----CCeecCCCCCccHHHH-HHHHHHhcChhHHHHHHHHHHhhcCeeEEEEeeCC--CCc Confidence 234678888888877652 3444432 22222222 23333444788999999999999999998876653 344 Q ss_pred eeeEEcCcceeeEEeeccCcEE-----------------EEEeccccee---------cc------cCCcc--------- Q lcl|Aclame:pro 155 EKFQVVSPYIFSKRYNPETDTW-----------------YYVITDVYRN---------VV------SGYFN--------- 193 (533) Q Consensus 155 ~elr~ldP~~ik~v~d~~g~~e-----------------~y~y~~~~~~---------~~------~~~~~--------- 193 (533) ..++.++|+.+..++|...... ..+|...... .. ....+ T Consensus 128 ~~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (456) T protein:vir:79 128 ATITADSPETMVVSVDPLQPWRIRSAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAV 207 (456) T ss_pred eEEEEeccceeEEEEcCCCCCceEEEEEEEEecCCceeEEEEEcCCceEEEEEEEEeeccccceeeeccCCceeeccccc Confidence 4688999999988887544310 0111111000 00 00000 Q ss_pred cccCcccEEEEecCcccCcccccchhHHHHHHHHH--------HHHHHHHHHHHHHHhccccceeeecCC-CCCchhhHH Q lcl|Aclame:pro 194 EDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWN--------QLRLMEDALMLYRVVRSVDRRVFYVDV-GNVPPDKIN 264 (533) Q Consensus 194 ~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~N--------qLrm~EdalVIyRi~RAPeRr~fyidv-Gnlp~~kAe 264 (533) +....--++.|. .+.|+|-++..+.... .+...|.....+|+......-.+-.|- |+ + . T Consensus 208 ~~~~~~pvv~~~-------N~~~~gd~e~v~~liD~~~~~~s~~~~~~~~~a~~~~~~~G~~~~~~~~d~~g~-~----i 275 (456) T protein:vir:79 208 VTGSPPPVVVYQ-------NPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSSEHRLPKVDENGN-A----I 275 (456) T ss_pred CCCCceeEEEec-------CCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCccccccccccc-c----c Confidence 000000111121 1244555555443332 222333333334433221111111111 10 0 0 Q ss_pred HHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCCh-HHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 265 EYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDL-AEDVEYMLNRLISALKV 343 (533) Q Consensus 265 qy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~-i~Dv~Yf~~kLy~aL~V 343 (533) .+ .+.++ +..|. .|+ +..+.++..++..+++- .+-++-+-..++...++ T Consensus 276 ~~----~~~~~------~~~~~----------------~~~----~~~~~~~~q~~~~~~~~~~~~l~~~i~~i~~~t~~ 325 (456) T protein:vir:79 276 DY----ASIFE------AAPGA----------------LWE----LPPGVDIWESQTNDFTPMLSAIKEHIRQLSSATKT 325 (456) T ss_pred ch----hhhhh------hhccc----------------ccc----CCCCcceeeecccChHHHHHHHHHHHHHHHhhcCC Confidence 00 00100 00010 122 12334455555545542 34477888888899999 Q ss_pred CeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhh----hhccCCCccceeEEecCCcHHHHHHHHHHHHHH Q lcl|Aclame:pro 344 PKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMV----RMNKEFADQDFRLVMNRSNSIVEGERFAVIEQR 419 (533) Q Consensus 344 P~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qL----ilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R 419 (533) |..-|+...+-.-+..|---+..+-.-+.+.|+.|..-|++-+ -+.|......+++.|.....-+.... T Consensus 326 p~~~~~~~~~N~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~w~~~~~~s~~~~------- 398 (456) T protein:vir:79 326 PLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEK------- 398 (456) T ss_pred ChhHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEeCCCCCcCHHHH------- Confidence 9998885322112223333444455667777777776555433 34564433456788876555333333 Q ss_pred HHHHHHhh--hhhhHHHHHHHHhcCChhhhHH--HHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccc Q lcl|Aclame:pro 420 IGIAERLK--GWVREDWIYSNILQIPYDLKPQ--EEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFD 494 (533) Q Consensus 420 ~~~~~~~~--pyvgk~~i~k~il~~tde~~~q--~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (533) .+++.++. ...++. ....+|.++++++++ .+.+.+|.. +..+.|++.|.-. ... T Consensus 399 ada~~kl~~~G~~~~~-~~~~~lg~~~~~i~~~e~~r~~~e~~-------------------~~~~~~~~~~~~~-~~~ 456 (456) T protein:vir:79 399 YSAASLAKAAGESWAS-IRRNILNYNADQIKQDDLDRAREQIT-------------------LFAGNPVQRPQED-GSR 456 (456) T ss_pred HHHHHHHHhcCCChHH-HHHhcCCCCHHHHHHHHHHHHHHHHH-------------------HHhhhHhhcCCCC-CCC Confidence 34333332 344444 445689999876543 233444322 1222222222100 000 No 174 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=97.33 E-value=9.3e-05 Score=42.67 Aligned_cols=328 Identities=10% Similarity=0.037 Sum_probs=141.7 Q ss_pred eEEEeecCCC--CCeeeeEEcCcceee-EEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccch Q lcl|Aclame:pro 142 FLHILEKGSD--GTIEKFQVVSPYIFS-KRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRS 218 (533) Q Consensus 142 ~~~kiid~~k--~gI~elr~ldP~~ik-~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s 218 (533) ++.++-.... -++..|...||+++. ..++..+...... +....+.....+++...+++.|+--.++ ++|.| T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~~~~l~~~~-----~~~~~g~~~~~lp~~kfi~~~~~~~~g~-p~G~g 74 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIE-----QWGVFGKATVRIPVDRLVVFVNEREGAN-WLGQS 74 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeeccCCceeEEE-----ecCCCCCCcceeccCCEEEEEeCCCCCC-ccchh Confidence 6666665322 246678888998884 3345444332221 1122344567889999999999876665 89999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCC----chhh---HHHHHHHHHHHhhhceeeccCCCeeeccc Q lcl|Aclame:pro 219 YLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNV----PPDK---INEYLTNIAMQYKRDYWVRNNQNQFLGID 291 (533) Q Consensus 219 ~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnl----p~~k---Aeqy~~~im~~~knk~vyd~~tGei~d~~ 291 (533) .|++|.-+|-..+......+.+=---.--=++...+.|.- -+.. +.+..++.+.+.-..+.-+.+.|-|. T Consensus 75 Llr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~~g~~a~~ii--- 151 (355) T protein:vir:78 75 LLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYI--- 151 (355) T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCcceeEee--- Confidence 9999999999999888866655422111123333443321 1222 23344444444433333333333221 Q ss_pred ccchhhhHHhhhhcccccCCCcceeeecCC-CC-CChHHHHHHHHHHHHHhcCCCeeeccCCCC-ccchhhhhHHHHHHH Q lcl|Aclame:pro 292 NYFSIESILKDYFIPRRGDRRAVEIDILQG-SK-VDLAEDVEYMLNRLISALKVPKAFIGYEGD-VNAKNTLATQDIKFN 368 (533) Q Consensus 292 ~~~n~~smleDywlprR~g~~gtEi~TLpG-~n-lg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~-~gr~~eI~rde~kF~ 368 (533) -.|++|+.|.. |+ .+--.=++|+.+++-+++--..--.+.+++ .+++..-+-.++ |. T Consensus 152 -------------------p~g~~ie~~ea~g~~~~~~~~i~~~d~~Isk~iLGqtlTs~~~~~gGS~Alg~vh~~v-~~ 211 (355) T protein:vir:78 152 -------------------PHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASF-FT 211 (355) T ss_pred -------------------cCCceEEEeecCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhHHHHHHHH-HH Confidence 13578887753 22 222234999999988887655433332222 233322222222 44 Q ss_pred HHHHHHHHHHHHHHhhhhh-----hccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHH Q lcl|Aclame:pro 369 NTIKRIQGFFVEELERMVR-----MNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWV----REDWIYSNI 439 (533) Q Consensus 369 kfI~rLr~~F~~~l~~qLi-----lk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyv----gk~~i~k~i 439 (533) ..++...+.+.+.|.+||| ++.--...--+|.|..- | .+.+.+.+++..|..+--.+ .+.|+++++ T Consensus 212 ~~~~aD~~~i~~~ln~~li~~l~~lN~~~~~~~P~~~~~~~----~-~~~~~~a~~~~~l~~~G~~~~~~~~~~~~~e~~ 286 (355) T protein:vir:78 212 GSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQL----G-KEQPVTAEAIRALVECGAFTADPELEKDLRARY 286 (355) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEecCc----C-hhHHHHHHHHHHHHhCCCccccHHHHHHHHHHh Confidence 4555555555555555554 33211111113444221 1 12223455555555441112 245676655 Q ss_pred hcCCh-hhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchh Q lcl|Aclame:pro 440 LQIPY-DLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEE 518 (533) Q Consensus 440 l~~td-e~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (533) . +.. +.-++ ...+. ........+.+.++.....+..... ...+..+.+. T Consensus 287 g-ip~p~~~~~--------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~-------~~~a~~~~~~ 336 (355) T protein:vir:78 287 G-LPAPAERDD--------------------GADAA--AAKAAGRRRAKRLPGQRQGAALPSR-------SPRADPPRRR 336 (355) T ss_pred C-CCCCCCCCc--------------------ccCCc--cccccccccccccCCcccccccccc-------CCCCCChhhh Confidence 4 221 10000 00000 0000000000111000000000000 0000011111 Q ss_pred hc---CCcccCCCCCCCC Q lcl|Aclame:pro 519 ET---GGGEEELPFPEEE 533 (533) Q Consensus 519 ~~---g~~~~~~~~~~~~ 533 (533) +. ....-+-+-+--. T Consensus 337 ~~~~~~~~~~~~~~~~~~ 354 (355) T protein:vir:78 337 GPLRRRPRHPAHRRCAPD 354 (355) T ss_pred HHHHHHhhccccCCCCCC Confidence 00 0000000000000 No 175 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=97.20 E-value=0.00013 Score=41.83 Aligned_cols=416 Identities=13% Similarity=0.050 Sum_probs=176.6 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCc------ccCCCC-cccCCCCCccccchhhcccccCccccchHHHHHHHHHH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAP------HGAGGS-SMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRM 73 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p------~~~~ga-s~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m 73 (533) +++++.=...+...+. ++.......-.| +-..|. +.|-.. . ... . .+.. + .++ T Consensus 30 ~~~~~~~~~~~~~~i~-~~i~~~~~~~~~r~~~~~~yY~g~~~~i~~~---~-~~~---~---~~~~-~--------~ri 89 (501) T protein:vir:96 30 ADNLEELMVNNWELLK-NFINHHKLRQAPRIQELLDYARGENHDVLKS---G-RRK---D---NEMA-D--------KRA 89 (501) T ss_pred ccccccccCChHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcccCc---c-ccC---c---cccc-c--------cee Confidence 2222111000000000 000000000000 012221 111100 0 000 0 0000 1 123 Q ss_pred hhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHH---HHHhhhHHHHHHHHHHHhhcCceeEEEeecCC Q lcl|Aclame:pro 74 DYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYL---DYVINIEKNAYPIIRNMIKYGDMFLHILEKGS 150 (533) Q Consensus 74 ~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i---~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~ 150 (533) .++-+.-+|+..+..++ +.|+.+...+.+-.+.+.+.| .+.-+|+....+.++..++.|+.|.+...|. T Consensus 90 --~~n~~k~Ivd~~~~yl~-----g~p~~~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~de- 161 (501) T protein:vir:96 90 --VHNYGRMISKFKTGYLA-----GNPIRVEYDDNDDNSQNDDAIKRIGRINDLDSLNRTLIRDLSQTGRAYEVIYRSE- 161 (501) T ss_pred --ecchHHHHHHHHhhhhc-----ccCeeEeeCCccchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcC- Confidence 25677888888887665 567777776544444444444 4445799999999999999999999988763 Q ss_pred CCCeeeeEEcCcceeeEEeeccCc--EEEE-----------------Eeccccee--cccCCc------ccccCcccEEE Q lcl|Aclame:pro 151 DGTIEKFQVVSPYIFSKRYNPETD--TWYY-----------------VITDVYRN--VVSGYF------NEDIPEEDVIH 203 (533) Q Consensus 151 k~gI~elr~ldP~~ik~v~d~~g~--~e~y-----------------~y~~~~~~--~~~~~~------~~~~~~~dvi~ 203 (533) +|-..+..+||+.+-++++.... ..++ +|+....+ ...+.. .+.+..=.+++ T Consensus 162 -dg~~~i~~~~p~~~~~v~d~~~~~~~~~~v~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~ 240 (501) T protein:vir:96 162 -YDETRIKRLSPLETFVIYDNSLEDNSIAAVRYYNRGTLQSAKDVVEIYTDEHIYTLDASDDFNEISVTTHAFGTVPITE 240 (501) T ss_pred -CCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeecCCCcEEEEEEEcCCcEEEEeeCCCceeccccccCCCccceEE Confidence 45557999999999999987532 1111 22222211 111100 11111112344 Q ss_pred EecCcccCcccccchhHHHHHHHHHHHHHHHH-HHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeecc Q lcl|Aclame:pro 204 FSHKIDTNFFPYGRSYLESARAIWNQLRLMED-ALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRN 282 (533) Q Consensus 204 ~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed-alVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~ 282 (533) |.. .+.|.|-++.++....-+-.+-- ....-+..+.|-+-+.-....+.+. -... +.. +++ T Consensus 241 ~~n------n~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~G~~~~~~~~-----~~~~-~~~--~~~---- 302 (501) T protein:vir:96 241 YLN------NIDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGM-----QASD-MKR--TRL---- 302 (501) T ss_pred ecC------CccCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecccccCccc-----chhh-hhh--cCe---- Confidence 322 13566666665444443332222 2222233333333332222111110 0000 000 011 Q ss_pred CCCeeecccccchhhhHHhhhhccccc----CCCcceeeecCCC-CCChH-HHHHHHHHHHHHhcCCCeeeccCCCCccc Q lcl|Aclame:pro 283 NQNQFLGIDNYFSIESILKDYFIPRRG----DRRAVEIDILQGS-KVDLA-EDVEYMLNRLISALKVPKAFIGYEGDVNA 356 (533) Q Consensus 283 ~tGei~d~~~~~n~~smleDywlprR~----g~~gtEi~TLpG~-nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr 356 (533) ++++... +..+..+..|-.. +...+ .-++-+.+.+|...++|-.-++..+ |+ T Consensus 303 --------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~--~n 360 (501) T protein:vir:96 303 --------------------MQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNTPDMSDTNFS--GN 360 (501) T ss_pred --------------------eeecccccccccccCcceeeEeccCCHHHHHHHHHHHHHHHHHHhCCcccCccccc--cc Confidence 1111111 1223344444322 32222 2366678888999999964443221 33 Q ss_pred hhhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--hh-----ccCCCccc---eeEEecCCcHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 357 KNTLAT--QDIKFNNTIKRIQGFFVEELERMV--RM-----NKEFADQD---FRLVMNRSNSIVEGERFAVIEQRIGIAE 424 (533) Q Consensus 357 ~~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--il-----k~i~t~ee---w~~~f~~dn~f~E~ke~ei~~~R~~~~~ 424 (533) .+..+. -.......+.+.++.|...|++-+ ++ ++....-+ .++.|.+.-.-.+. +.++++. T Consensus 361 ~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~n~~-------e~ad~~~ 433 (501) T protein:vir:96 361 TSGEALKYKLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLVNEFKDFDESLLKITFTPNLPKSLN-------EQVSILT 433 (501) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeCCCCCcCHH-------HHHHHHH Confidence 333332 233344566666777776655442 21 22222223 35777654443333 3344556 Q ss_pred HhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCC Q lcl|Aclame:pro 425 RLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELG 504 (533) Q Consensus 425 ~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (533) .+..-+++.++.+.+-..+| -.++-+.|++|..+...+... + +..+ ..|...+- ++ ..++|-+ T Consensus 434 kl~g~iS~et~~~~l~~v~D-~~~E~~ri~~E~~~~~~~~~~-~-~~~~--~~~~~~~~-~~---e~~~d~~-------- 496 (501) T protein:vir:96 434 GLGGQVSQETALSLSGLVES-PNEELDKINKEMSEIDFKGYS-N-DFNE--HVGKYTDE-VK---ETHTDDF-------- 496 (501) T ss_pred HHhccCchHHHHHhCCCCCC-HHHHHHHHHHHHHHhhccccc-c-chhh--cccccCCc-CC---CCCCCcc-------- Confidence 66667999999987765554 334445566665432211100 0 0000 01110000 00 0000000 Q ss_pred CccCcCcccCCch Q lcl|Aclame:pro 505 GELNLGGAFEEFE 517 (533) Q Consensus 505 ~~~~~~~~~~~~~ 517 (533) | .+++ T Consensus 497 -e-------~~~~ 501 (501) T protein:vir:96 497 -E-------REYE 501 (501) T ss_pred -c-------cccC Confidence 0 0011 No 176 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=97.16 E-value=0.00015 Score=41.61 Aligned_cols=423 Identities=13% Similarity=0.052 Sum_probs=187.8 Q ss_pred CCC-cchhhhhhh----HHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhh Q lcl|Aclame:pro 1 MPS-LEKYKKLNE----AVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDY 75 (533) Q Consensus 1 ~~~-~~~w~k~de----~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~ 75 (533) ||+ +-.|=+-=. .+-++ ..+-++.-+-....++. -.|.-.+..-...-+|+. ....+-|+.|.. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~g-----ltp~~l~~il~~a~~gd~---~~~~~L~edm~e 69 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQT---SRLAGLAKEFAQHPAKG-----LTPAKLARILVEAEQGNL---QAQAELFMDMEE 69 (526) T ss_pred CCeeeCCCCCccCccccchhhh---hhhhhhhhhcccCCCCC-----cCHHHHHHHHHHhhCCCH---HHHHHHHHHHHh Confidence 333 222211000 00000 00000000000000000 011000011111111222 344667888876 Q ss_pred cChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh----hhHHHHHHHHHHHhhcCceeEEEeecCCC Q lcl|Aclame:pro 76 TDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI----NIEKNAYPIIRNMIKYGDMFLHILEKGSD 151 (533) Q Consensus 76 ~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll----~f~~~~~e~~R~wyvDGr~~~~kiid~~k 151 (533) .|++|.++++....-+...+..-.|- -.+....+.+.+.+.+.| +|+..+.+... -+-.|-.++.++.+... T Consensus 70 ~D~~i~s~l~~Rk~av~~~~w~I~p~---~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ld-A~~~G~s~~Ei~w~~~~ 145 (526) T protein:vir:79 70 RDAHLFAEMSKRKRAILGLDWAVEPP---RNASAAEKADADYLHELLLDLEGLEDLLLDALD-GIGHGYSCIELEWALQG 145 (526) T ss_pred hChHHHHHHHHHHHHHhCCCceEecC---CCCChHHHHHHHHHHHHHhcccCHHHHHHHHHh-hhhhcceeEEEEEeecC Confidence 79999999999987665433221111 111112233333444443 57777777776 45589999998876532 Q ss_pred --CCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHH Q lcl|Aclame:pro 152 --GTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQ 229 (533) Q Consensus 152 --~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~Nq 229 (533) -.+.++...||+.++ ++..++- ...+. ..+..+..+++...++++|..-.+. ++|.|.|..|.-+|-. T Consensus 146 g~~~~~~l~~r~~~~F~--~~~~~~~-~l~~~------~~~~~g~~l~~~k~iv~~~~~~~g~-p~g~gLlr~~~w~~~f 215 (526) T protein:vir:79 146 REWMPLAFHHRPQSWFQ--LNPEDQN-ELRLR------DNSPAGEALQPFGWIIHRPRARSGY-VARSGLFRVLAWPYLF 215 (526) T ss_pred CceeEEEeeeecccceE--eccCCCc-EEEec------CCCCCceeecCCceEEEeecCCcCC-ccccchHHHHHHHHHH Confidence 235567777776543 3333321 11121 2234456788999999999777775 7999999999999998 Q ss_pred HHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhccccc Q lcl|Aclame:pro 230 LRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRG 309 (533) Q Consensus 230 Lrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~ 309 (533) -+......+.+=-.-.-.=|+..++.|+-.+.| ...++.+ ....+ | .+-| + T Consensus 216 K~~~~~~w~~F~E~yG~P~~igky~~~a~~~ek-~~L~~av-~~i~~----d--a~~i-----------------i---- 266 (526) T protein:vir:79 216 RHYATSDLAEMLEIYGLPIRLGKYPPGTADEEK-ATLLRAV-TGLGH----A--AAGI-----------------I---- 266 (526) T ss_pred HHhhHHHHHHHHHHcCCceEEEecCCCCCHHHH-HHHHHHH-HHHhc----C--cEEE-----------------e---- Confidence 888777666665444555566666766433222 2222222 22211 1 1211 1 Q ss_pred CCCcceeeecCCCCCC-h--HHHHHHHHHHHHHhc-CCCeeeccCCCC-ccchhhhhHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 310 DRRAVEIDILQGSKVD-L--AEDVEYMLNRLISAL-KVPKAFIGYEGD-VNAKNTLATQDIKFNNTIKRIQGFFVEELER 384 (533) Q Consensus 310 g~~gtEi~TLpG~nlg-~--i~Dv~Yf~~kLy~aL-~VP~srl~~~~~-~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~ 384 (533) ..|++|+.+..++-+ . ..=++|..+++-+++ |=-++--..+++ .+++..-+-.++ +...++...+.+.+.|.+ T Consensus 267 -P~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~g~~gS~a~g~vh~~v-~~di~~aDa~~i~~tln~ 344 (526) T protein:vir:79 267 -PETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEV-RHDILASDARQLAATLSR 344 (526) T ss_pred -cCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhccccccCcchhhhhHHHHHHH-HHHHHHHHHHHHHHHHHH Confidence 135778777633211 1 122889999988774 322211111111 222222122233 344455555555555555 Q ss_pred hhh-----hccCCC-ccce--eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhh Q lcl|Aclame:pro 385 MVR-----MNKEFA-DQDF--RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAA 456 (533) Q Consensus 385 qLi-----lk~i~t-~eew--~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E 456 (533) ||| ++..-. +-.+ ++.|-. .|-.+...+.+++..|..+--=|+++|+++++.- .. T Consensus 345 ~Li~~l~~~N~~~~~~~~~~p~~~~~~----~e~eDl~~~a~~~~~L~~~G~~i~~~~i~e~~gi-p~------------ 407 (526) T protein:vir:79 345 DLLWPLLVLNRPGSPDVRRAPRLVFDL----REQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQ------------ 407 (526) T ss_pred HHHHHHHHhCCCCcCCccccceEEeCC----CCcccHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CC------------ Confidence 554 443221 1122 233321 1233333445555555554212778888887642 11 Q ss_pred cccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccCCCCCCCC Q lcl|Aclame:pro 457 GGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELPFPEEE 533 (533) Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 533 (533) ++.++.+ ......|...+..+ +. . .+.. ....++..|+.. T Consensus 408 --------~~~~e~~-----l~~~~~~~~~~~~~-----~~--------~----~~~~-------~~~~~~~~~~~~ 447 (526) T protein:vir:79 408 --------PAKNEPV-----LRPAAQPAILSRQH-----GQ--------R----VAAL-------ATIVGPRYGDQQ 447 (526) T ss_pred --------CCCchhh-----ccccCCcccccccc-----cc--------c----cccc-------cccccccCchhh Confidence 1111110 00011111111000 00 0 0000 000000001110 No 177 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=97.15 E-value=0.00015 Score=41.52 Aligned_cols=328 Identities=12% Similarity=0.105 Sum_probs=147.2 Q ss_pred cchhhh--------hhhHHHHHH--hhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHH Q lcl|Aclame:pro 4 LEKYKK--------LNEAVNFTN--FLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRM 73 (533) Q Consensus 4 ~~~w~k--------~de~~~~~~--~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m 73 (533) +.+=++ .+....++. -....|+|+-|..--.... ..+- ......+.+|..-+ +...|-+-+|.- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~----~~~~-~~~~~~~~~~~pp~-~~~~la~~~~~~ 74 (351) T protein:vir:78 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAE----ILDY-VECWSNGEWFEPPV-SFAGLAKSFRAS 74 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcch----hhhh-hhhhccCceecCCC-CHHHHHHHHhhh Confidence 111111 011111111 1122333322221000000 0000 11122233333222 344555666632 Q ss_pred hhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCC Q lcl|Aclame:pro 74 DYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGT 153 (533) Q Consensus 74 ~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~g 153 (533) |...+||---+|... ..+- -+..++.. .| ...+..+++.|+.|+.++.+. .+. T Consensus 75 ----~~h~~~l~~k~n~l~-~~~~--------Pn~~~t~~---------~f----~~~~~d~ll~Gnay~~~~rn~-~G~ 127 (351) T protein:vir:78 75 ----THHSSALFFKANVLA-STFR--------PHRWLSRH---------AF----ERWALDFLTFGNGYLERRRNM-VGG 127 (351) T ss_pred ----HhhhhhhhhhhhHHh-hccc--------CCCCCCHH---------HH----HHHHHHHHhcCCeEEEEEECC-CCC Confidence 333455543333211 1110 11112221 12 345668889999999998864 456 Q ss_pred eeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 IEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLM 233 (533) Q Consensus 154 I~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~ 233 (533) +.+|..|+|.+|++..+..+ .+|++. .+....+++.+|+|+..-.+.+ +-||+|-+..|++.+..- T Consensus 128 ~~~L~pl~~~~v~~~~~~~~--~~~~~~--------~~~~~~~~~~eVihir~~~~~~-~~yGl~~~~~a~~si~l~--- 193 (351) T protein:vir:78 128 TLRLEPALAKYVRRKADFSG--FVYVNG--------WQERHEFAPDSVFQLVRPDINQ-EVYGLPEYLSSLHSAWLN--- 193 (351) T ss_pred EEEEEEecCcceEEeeeCCe--EEEEec--------CCeEEEEccccEEEEcCCCCCC-CcccccHHHHHHHHHHHH--- Confidence 99999999999988776543 343332 2344668889999996432222 359999888877765432 Q ss_pred HHHHHHHH--Hh--ccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhccccc Q lcl|Aclame:pro 234 EDALMLYR--VV--RSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRG 309 (533) Q Consensus 234 EdalVIyR--i~--RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~ 309 (533) .+.-.|| .. -|--.-|+|+.-+++ ..++.+-+++-+..++ | ..|..+.+ +.--. T Consensus 194 -~~a~~~~~~~f~NGa~pggIl~~~~~~l-s~e~~~~lr~~~~~~~---------G----~~N~~~~~-------v~~~~ 251 (351) T protein:vir:78 194 -ESSTLFRRKYYENGSHAGFILYMTDAAQ-KQDDVDNMRDALKNAK---------G----PGNFRNVF-------MYAPG 251 (351) T ss_pred -HHHHHHHHHHHhccCCCceEEEecCCCC-CHHHHHHHHHHHHHhc---------C----ccccccee-------eecCC Confidence 2333333 11 122245566543344 4455555555554432 1 11110001 11111 Q ss_pred C-CCcceeeecCCCCCChHHHHH------HHHHHHHHhcCCCeeeccCCCC-ccchhhhhHHHHHHH-HHHHHHHHHHHH Q lcl|Aclame:pro 310 D-RRAVEIDILQGSKVDLAEDVE------YMLNRLISALKVPKAFIGYEGD-VNAKNTLATQDIKFN-NTIKRIQGFFVE 380 (533) Q Consensus 310 g-~~gtEi~TLpG~nlg~i~Dv~------Yf~~kLy~aL~VP~srl~~~~~-~gr~~eI~rde~kF~-kfI~rLr~~F~~ 380 (533) | ..|.++.-|.- . ..|.+ +-.+.+.++.+||...++.-++ .+..+.+.-...-|. .-|.-++++|.+ T Consensus 252 g~~~g~k~~pls~-~---~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~P~~~~iee 327 (351) T protein:vir:78 252 GKKDGIQLIPVSE-V---AAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE 327 (351) T ss_pred CCccceeEEEcCC-C---hhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH Confidence 1 23555554311 1 12333 3445599999999999986432 222233333334454 356777888876 Q ss_pred HHhhhhhhccCCCccceeEEecCCcHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 381 ELERMVRMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGI 422 (533) Q Consensus 381 ~l~~qLilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~ 422 (533) +.. .| .++ + +.| +..++++.=... T Consensus 328 ~n~-~l------~~~-~-~~F---------~~~~Llr~d~ka 351 (351) T protein:vir:78 328 LND-WL------GDE-V-VRF---------DDYEIPPAPVAA 351 (351) T ss_pred HHh-hc------Ccc-c-eec---------ChhhhccccccC Confidence 432 22 112 1 222 222222211111 No 178 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=97.14 E-value=0.00015 Score=41.49 Aligned_cols=402 Identities=9% Similarity=0.014 Sum_probs=164.9 Q ss_pred HHhhcccccccCcccCC--CCcccCCCCCccccchhhcccccCccc-----cch---HHHHHHH----------H---HH Q lcl|Aclame:pro 17 TNFLSPMYGMGAPHGAG--GSSMIPINMYHPFATAGYASRFYGGIE-----FNR---FFLYDMY----------D---RM 73 (533) Q Consensus 17 ~~~~~~~~s~~~p~~~~--gas~i~~~~~~~~~~~~~~~~~ygg~~-----~n~---~~li~~Y----------R---~m 73 (533) -+|+.-++.+..+.... =...|......- -...-...+|-+.. .++ ..+.+.| + ++ T Consensus 1 ~~~~~~~~~~~~~~~~~e~i~~~i~~~~~~~-~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 79 (474) T protein:vir:10 1 MTLYKLIDDIEAQGILPKHIEALIESHKDDR-ERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKL 79 (474) T ss_pred CchHHHHhhccccCCCHHHHHHHHHHhhhhh-HHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCccccc Confidence 22222222221111000 000111000000 00000001111100 000 0000000 0 01 Q ss_pred hhcChhHHHHHHHhhceeeecCCCCceeeeeccc-ccccHHHHHHHHHHh---hhHHHHHHHHHHHhhcCceeEEEeecC Q lcl|Aclame:pro 74 DYTDPLISTVLDIIADECTIPNENGNIVDVVTKD-IELAKAILSYLDYVI---NIEKNAYPIIRNMIKYGDMFLHILEKG 149 (533) Q Consensus 74 ~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~-~e~s~si~~~i~~ll---~f~~~~~e~~R~wyvDGr~~~~kiid~ 149 (533) .++-+...|+..+...+ +.|+.+...+ .+-.+++.+.|.+.+ +|+.+..+.++..++.|+.|.+..+| T Consensus 80 --~~n~~~~ivd~~~~yl~-----g~pv~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d- 151 (474) T protein:vir:10 80 --NNSFDSEIVDTRVGYLH-----GVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYID- 151 (474) T ss_pred --ccchHHHHHHhHhhhee-----ccceeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeC- Confidence 13444555555554443 5677777643 334555555555544 78999999999999999999987775 Q ss_pred CCCCeeeeEEcCcceeeEEeeccCcEEEE-------------------Eeccccee--cccCCc--------ccccCccc Q lcl|Aclame:pro 150 SDGTIEKFQVVSPYIFSKRYNPETDTWYY-------------------VITDVYRN--VVSGYF--------NEDIPEED 200 (533) Q Consensus 150 ~k~gI~elr~ldP~~ik~v~d~~g~~e~y-------------------~y~~~~~~--~~~~~~--------~~~~~~~d 200 (533) ++|-..++.++|+.+-++++..++..++ +|+....+ .+.+.. .+.+..=. T Consensus 152 -~~~~~~~~~i~p~~~~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vP 230 (474) T protein:vir:10 152 -TNGDIRIKNIDPYNVIFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNP 230 (474) T ss_pred -CCCeeEEEEEcccceEEEEcCCCceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccc Confidence 3555679999999999998876653221 22221111 111100 01111112 Q ss_pred EEEEecCcccCcccccchhHHHHHHHHHHHHHHHH-HHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhcee Q lcl|Aclame:pro 201 VIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMED-ALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYW 279 (533) Q Consensus 201 vi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed-alVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~v 279 (533) +++|.. .+.|.|-|+.++....-+-.+-- ....-+-...| +.++-...++. +-+..+. . T Consensus 231 vv~~~n------~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~---~l~i~g~~~~~----~~~~~~~-~------ 290 (474) T protein:vir:10 231 LFGVPN------NKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLA---YLVLRGMGMSE----EMIQETQ-K------ 290 (474) T ss_pred eEEecC------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc---hhhhccCCCCc----hhhhhhh-h------ Confidence 233321 23566767765555444433222 11111222222 22222112221 1111110 0 Q ss_pred eccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecC-CCCCC-hHHHHHHHHHHHHHhcCCCeeeccCCCCccch Q lcl|Aclame:pro 280 VRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQ-GSKVD-LAEDVEYMLNRLISALKVPKAFIGYEGDVNAK 357 (533) Q Consensus 280 yd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLp-G~nlg-~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~ 357 (533) .|.+ |++ ++ +..++.|- ..+.. ...-++-+.+.+|...++|---.+ ...|+. T Consensus 291 ----~~~i----------------~~~--~~--~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~--~~~~n~ 344 (474) T protein:vir:10 291 ----SGAF----------------ELF--DK--DMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSD--EFNGNV 344 (474) T ss_pred ----ccee----------------Eec--CC--CCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcccccc--cccccc Confidence 1111 111 11 11233332 12332 223477888999999999953222 112333 Q ss_pred hhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--hh-----cc-CCCccce---eEEecCCcHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 358 NTLAT--QDIKFNNTIKRIQGFFVEELERMV--RM-----NK-EFADQDF---RLVMNRSNSIVEGERFAVIEQRIGIAE 424 (533) Q Consensus 358 ~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--il-----k~-i~t~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~ 424 (533) |..+. -......-+.+.++.|...|++-+ |+ ++ ...+.+| ++.|.+.---.+...++ +++ T Consensus 345 Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~-------~~~ 417 (474) T protein:vir:10 345 PIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQ-------VLI 417 (474) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccceEEeCCCCCCCHHHHHH-------HHH Confidence 33333 112223344555556666554432 21 22 2233444 67887654433444443 444 Q ss_pred HhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccc Q lcl|Aclame:pro 425 RLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFD 494 (533) Q Consensus 425 ~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (533) .+.+.+|+.++.+..-..+| -.++-+.|++|..+.....++.. +.-.+. +.+.. +.+ T Consensus 418 kl~g~iS~et~~~~l~~v~d-~~~E~eri~~E~~e~~~~~~~~~---------~~~~~~-~~~~~--~s~ 474 (474) T protein:vir:10 418 NLKGQVSERTRLGQSQLVDD-VDYELDEMEKESLEFNDKLPDID---------EGDAND-KSQNN--QSE 474 (474) T ss_pred HHhccCchHHHHHhCCCCCC-HHHHHHHHHHHHHHHHhhccccc---------CCCcCC-CCccc--cCC Confidence 45577999999987665554 22233334444321111100000 000000 00000 000 No 179 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=97.14 E-value=0.00015 Score=41.49 Aligned_cols=402 Identities=9% Similarity=0.014 Sum_probs=164.9 Q ss_pred HHhhcccccccCcccCC--CCcccCCCCCccccchhhcccccCccc-----cch---HHHHHHH----------H---HH Q lcl|Aclame:pro 17 TNFLSPMYGMGAPHGAG--GSSMIPINMYHPFATAGYASRFYGGIE-----FNR---FFLYDMY----------D---RM 73 (533) Q Consensus 17 ~~~~~~~~s~~~p~~~~--gas~i~~~~~~~~~~~~~~~~~ygg~~-----~n~---~~li~~Y----------R---~m 73 (533) -+|+.-++.+..+.... =...|......- -...-...+|-+.. .++ ..+.+.| + ++ T Consensus 1 ~~~~~~~~~~~~~~~~~e~i~~~i~~~~~~~-~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 79 (474) T protein:vir:94 1 MTLYKLIDDIEAQGILPKHIEALIESHKDDR-ERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKL 79 (474) T ss_pred CchHHHHhhccccCCCHHHHHHHHHHhhhhh-HHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCccccc Confidence 22222222221111000 000111000000 00000001111100 000 0000000 0 01 Q ss_pred hhcChhHHHHHHHhhceeeecCCCCceeeeeccc-ccccHHHHHHHHHHh---hhHHHHHHHHHHHhhcCceeEEEeecC Q lcl|Aclame:pro 74 DYTDPLISTVLDIIADECTIPNENGNIVDVVTKD-IELAKAILSYLDYVI---NIEKNAYPIIRNMIKYGDMFLHILEKG 149 (533) Q Consensus 74 ~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~-~e~s~si~~~i~~ll---~f~~~~~e~~R~wyvDGr~~~~kiid~ 149 (533) .++-+...|+..+...+ +.|+.+...+ .+-.+++.+.|.+.+ +|+.+..+.++..++.|+.|.+..+| T Consensus 80 --~~n~~~~ivd~~~~yl~-----g~pv~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d- 151 (474) T protein:vir:94 80 --NNSFDSEIVDTRVGYLH-----GVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYID- 151 (474) T ss_pred --ccchHHHHHHhHhhhee-----ccceeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeC- Confidence 13444555555554443 5677777643 334555555555544 78999999999999999999987775 Q ss_pred CCCCeeeeEEcCcceeeEEeeccCcEEEE-------------------Eeccccee--cccCCc--------ccccCccc Q lcl|Aclame:pro 150 SDGTIEKFQVVSPYIFSKRYNPETDTWYY-------------------VITDVYRN--VVSGYF--------NEDIPEED 200 (533) Q Consensus 150 ~k~gI~elr~ldP~~ik~v~d~~g~~e~y-------------------~y~~~~~~--~~~~~~--------~~~~~~~d 200 (533) ++|-..++.++|+.+-++++..++..++ +|+....+ .+.+.. .+.+..=. T Consensus 152 -~~~~~~~~~i~p~~~~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vP 230 (474) T protein:vir:94 152 -TNGDIRIKNIDPYNVIFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNP 230 (474) T ss_pred -CCCeeEEEEEcccceEEEEcCCCceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccc Confidence 3555679999999999998876653221 22221111 111100 01111112 Q ss_pred EEEEecCcccCcccccchhHHHHHHHHHHHHHHHH-HHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhcee Q lcl|Aclame:pro 201 VIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMED-ALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYW 279 (533) Q Consensus 201 vi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed-alVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~v 279 (533) +++|.. .+.|.|-|+.++....-+-.+-- ....-+-...| +.++-...++. +-+..+. . T Consensus 231 vv~~~n------~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~---~l~i~g~~~~~----~~~~~~~-~------ 290 (474) T protein:vir:94 231 LFGVPN------NKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLA---YLVLRGMGMSE----EMIQETQ-K------ 290 (474) T ss_pred eEEecC------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc---hhhhccCCCCc----hhhhhhh-h------ Confidence 233321 23566767765555444433222 11111222222 22222112221 1111110 0 Q ss_pred eccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecC-CCCCC-hHHHHHHHHHHHHHhcCCCeeeccCCCCccch Q lcl|Aclame:pro 280 VRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQ-GSKVD-LAEDVEYMLNRLISALKVPKAFIGYEGDVNAK 357 (533) Q Consensus 280 yd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLp-G~nlg-~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~ 357 (533) .|.+ |++ ++ +..++.|- ..+.. ...-++-+.+.+|...++|---.+ ...|+. T Consensus 291 ----~~~i----------------~~~--~~--~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~--~~~~n~ 344 (474) T protein:vir:94 291 ----SGAF----------------ELF--DK--DMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSD--EFNGNV 344 (474) T ss_pred ----ccee----------------Eec--CC--CCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcccccc--cccccc Confidence 1111 111 11 11233332 12332 223477888999999999953222 112333 Q ss_pred hhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--hh-----cc-CCCccce---eEEecCCcHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 358 NTLAT--QDIKFNNTIKRIQGFFVEELERMV--RM-----NK-EFADQDF---RLVMNRSNSIVEGERFAVIEQRIGIAE 424 (533) Q Consensus 358 ~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--il-----k~-i~t~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~ 424 (533) |..+. -......-+.+.++.|...|++-+ |+ ++ ...+.+| ++.|.+.---.+...++ +++ T Consensus 345 Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~-------~~~ 417 (474) T protein:vir:94 345 PIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQ-------VLI 417 (474) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccceEEeCCCCCCCHHHHHH-------HHH Confidence 33333 112223344555556666554432 21 22 2233444 67887654433444443 444 Q ss_pred HhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccc Q lcl|Aclame:pro 425 RLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFD 494 (533) Q Consensus 425 ~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (533) .+.+.+|+.++.+..-..+| -.++-+.|++|..+.....++.. +.-.+. +.+.. +.+ T Consensus 418 kl~g~iS~et~~~~l~~v~d-~~~E~eri~~E~~e~~~~~~~~~---------~~~~~~-~~~~~--~s~ 474 (474) T protein:vir:94 418 NLKGQVSERTRLGQSQLVDD-VDYELDEMEKESLEFNDKLPDID---------EGDAND-KSQNN--QSE 474 (474) T ss_pred HHhccCchHHHHHhCCCCCC-HHHHHHHHHHHHHHHHhhccccc---------CCCcCC-CCccc--cCC Confidence 45577999999987665554 22233334444321111100000 000000 00000 000 No 180 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=97.11 E-value=0.00017 Score=41.31 Aligned_cols=409 Identities=11% Similarity=0.048 Sum_probs=165.9 Q ss_pred hHHHHHHhhcccccccCcccCCCC-cccCCCCCccccchhhcccccCccccchHHHHHHHHHHhh--------------- Q lcl|Aclame:pro 12 EAVNFTNFLSPMYGMGAPHGAGGS-SMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDY--------------- 75 (533) Q Consensus 12 e~~~~~~~~~~~~s~~~p~~~~ga-s~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~--------------- 75 (533) -.+|-.++.+..|.+- .++++- +..........-...+. +.....+.+|+.+.. T Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~i~--------~~~~~~~~~~~~~~~yY~g~~~~i~~~~~~ 70 (481) T protein:vir:10 1 MTVYTINNINTKFSPL--ANDDFVVSDLAELLKEENLRNFIS--------RHQTEQVPRLEMLESYYLNRNTDILAGERR 70 (481) T ss_pred CeeEeeehhchhcccc--cCceeeeecchhhcCHHHHHHHHH--------HHHHHHHHHHHHHHHHhcCCCcccccCccc Confidence 1112122222222210 111110 00000000000000000 000011111111111 Q ss_pred ------------cChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeE Q lcl|Aclame:pro 76 ------------TDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFL 143 (533) Q Consensus 76 ------------~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~ 143 (533) ..+-+..+|+..+...+ +.|+.+..++.+. +..+..|....+|+.+..+.++..++.|+.|. T Consensus 71 ~~~~~~~~~~ki~~n~~~~ivd~~~~~l~-----g~~~~~~~~d~~~-~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~ 144 (481) T protein:vir:10 71 LQKYGDKADHRAVHNYAKYVSRFIVGYLT-----GNPITITHQDNQT-NDKIIELNDLNDADEVNSDLALNLSIYGRAYE 144 (481) T ss_pred cccccccccceeecchHHHHHHHHHhhhc-----cCCceEecCChhH-HHHHHHHHHhcChhHHHHHHHHHHHhcCeEEE Confidence 12333444444443322 4556666655333 33344555556899999999999999999999 Q ss_pred EEeecCCCCCeeeeEEcCcceeeEEeeccCcE--E----EE--------------Eeccccee----cccCCc-----cc Q lcl|Aclame:pro 144 HILEKGSDGTIEKFQVVSPYIFSKRYNPETDT--W----YY--------------VITDVYRN----VVSGYF-----NE 194 (533) Q Consensus 144 ~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~--e----~y--------------~y~~~~~~----~~~~~~-----~~ 194 (533) +...| ++|...++.+||+.+-++++..+.. . +| +|+....+ .+++.. .+ T Consensus 145 ~~~~d--~dg~~~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~ 222 (481) T protein:vir:10 145 IVYRD--FEDRDTFKVLDPKSTFVVYDQTLDKKVVAGVRYFEKQDKDKVPVQHVEVYTTDKIYYIEIKGGTYHRVEEVEH 222 (481) T ss_pred EEEeC--CCCeEEEEEEcccceEEEEcCCCCCceEEEEEEEEEeeCCCceEEEEEEEecCeEEEEEecCCceeecccccc Confidence 98876 3566689999999999998865431 1 11 12221111 010000 01 Q ss_pred ccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHH-HHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHH Q lcl|Aclame:pro 195 DIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLM-EDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQ 273 (533) Q Consensus 195 ~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~-EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~ 273 (533) .+..=.+++|.- ...|.|-++..+....-+-.+ -+....-+-.+. +++++........+- ... T Consensus 223 ~~g~vPvv~~~n------~~~g~~~~~~v~~lida~~~~~s~~~~~~~~~~~---~~~~~~g~~~~~~~~-------~~~ 286 (481) T protein:vir:10 223 YYNDVPIIEYLN------DQFKQGDFENVIALIDLYDSAQSDTANYMTDLND---AMLAIIGNVDLDSED-------AKA 286 (481) T ss_pred cCCceeEEEeec------CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcC---ceeEeecCcCCCccc-------hhh Confidence 111112333321 135566555544333322221 111111222222 222332111110000 001 Q ss_pred hhh-ceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC-CCCChH-HHHHHHHHHHHHhcCCCeeeccC Q lcl|Aclame:pro 274 YKR-DYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG-SKVDLA-EDVEYMLNRLISALKVPKAFIGY 350 (533) Q Consensus 274 ~kn-k~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG-~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~ 350 (533) ++. +..+- ....+. ...+.+.++..|-. .+...+ .-++-+++.+|...++|-.-++. T Consensus 287 ~~~~~~~~~------------------~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~ 346 (481) T protein:vir:10 287 FRDANMIHL------------------EPGTNA--NGSEGKAEVKYVYKQYDVAGVEAYKKRLQNDIHKYTNTPDLNDEQ 346 (481) T ss_pred hhhccceec------------------cccccc--cCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccc Confidence 100 00000 000000 01111224444422 233333 33677888899999999544432 Q ss_pred CCCccchh--hhhHHHHHHHHHHHHHHHHHHHHHhh--hhhhcc--C--CCc---cceeEEecCCcHHHHHHHHHHHHHH Q lcl|Aclame:pro 351 EGDVNAKN--TLATQDIKFNNTIKRIQGFFVEELER--MVRMNK--E--FAD---QDFRLVMNRSNSIVEGERFAVIEQR 419 (533) Q Consensus 351 ~~~~gr~~--eI~rde~kF~kfI~rLr~~F~~~l~~--qLilk~--i--~t~---eew~~~f~~dn~f~E~ke~ei~~~R 419 (533) .+ |..+ .|.........-+.+.|+.|...|++ +|+++- + ..+ .+..+.|.....-.+...++ T Consensus 347 ~~--~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~~~~~~~~~~~a~----- 419 (481) T protein:vir:10 347 FS--GVQSGESMKYKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNLTGLKQHNYAELTITFTPNLPKSMMESIN----- 419 (481) T ss_pred cc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccceeeEEeCCCCCcCHHHHHH----- Confidence 11 2222 23223334555677777778776665 233321 1 112 23478887665544444444 Q ss_pred HHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCC Q lcl|Aclame:pro 420 IGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEG 499 (533) Q Consensus 420 ~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (533) ++.++..-++++++.+.+-..+| ..++-+.|++|..+.... ......+++ .+.+.++ T Consensus 420 --~~~kl~g~is~et~~~~l~~i~d-~~~E~~ri~~E~~~~~~~-----------~~~~~~~~~---------~~~~~~~ 476 (481) T protein:vir:10 420 --AFNALSGGVSESTRLSLLDFIDN-PKEELEKMQEEEAQREKQ-----------ADKRGYGEA---------FENHLNV 476 (481) T ss_pred --HHHHHhccCChHHHHHhCCCCCC-HHHHHHHHHHHHHHHHhh-----------hhhccCCcc---------CCCCCCC Confidence 44445566889998877655554 233334455553211110 001111111 1111112 Q ss_pred CccCC Q lcl|Aclame:pro 500 GEELG 504 (533) Q Consensus 500 ~~~~~ 504 (533) +...| T Consensus 477 dd~~g 481 (481) T protein:vir:10 477 DDSNG 481 (481) T ss_pred CCCCC Confidence 22222 No 181 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=97.11 E-value=0.00017 Score=41.31 Aligned_cols=407 Identities=14% Similarity=0.104 Sum_probs=179.2 Q ss_pred hhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHH--------HHHHHHHhhcChhHHHHHHHhhce Q lcl|Aclame:pro 19 FLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFL--------YDMYDRMDYTDPLISTVLDIIADE 90 (533) Q Consensus 19 ~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~l--------i~~YR~m~~~~PEV~~AId~Ivne 90 (533) +..+..+- +|-+. . ........|.++....+..+ ++.|++|. .|++|.++++.+..- T Consensus 1 v~~~~l~~----------e~at~--~--~~~d~~~~~~~~l~~~~~~il~~a~~g~~~~y~~l~-~D~~i~s~l~~rk~a 65 (488) T protein:vir:99 1 MEKPALGR----------EIATS--G--DGRDITRPFISGLQVPNDSILQRRGGNDLRVYEEIL-SDAQVKTVWGQRQLA 65 (488) T ss_pred CCccchhH----------HHHHH--H--hhhhhhccccCCCCCCChHHHHhhccCCHHHHHHHh-hChHHHHHHHHHHHH Confidence 11111110 00000 0 00000011111111111122 68899987 599999999999876 Q ss_pred eeecCCCCceeeeecccccccHHHHHHHH---HHhhhHHHHHHHHHHHhhcCceeEEEeecCCC--CCeeeeEEcCccee Q lcl|Aclame:pro 91 CTIPNENGNIVDVVTKDIELAKAILSYLD---YVINIEKNAYPIIRNMIKYGDMFLHILEKGSD--GTIEKFQVVSPYIF 165 (533) Q Consensus 91 aiv~d~~~~~v~v~l~~~e~s~si~~~i~---~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k--~gI~elr~ldP~~i 165 (533) +...+-.-.|- .+....+.+.+.+. +.++|+..+.+++.. +.+|-.+++++..... -.+.++...||+.+ T Consensus 66 v~~~~w~i~p~----~~~~~~~~~ae~v~~~l~~~~~~~~l~~~lda-~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f 140 (488) T protein:vir:99 66 VVSREWKVEAG----GDRPIDQAAAEHLEQQLQRVGWDRVTSKMLFG-VFYGYAVSELIYGRDDRYITLEAIKVRNRRRF 140 (488) T ss_pred HhcCCceEEcC----CCChHHHHHHHHHHHHHhCCCHHHHHHHHHhh-hhhcceeEEEEEeecCCeeeEeeeeeecccce Confidence 55433322211 11112223333333 335788888888764 5599999999875422 23557777888755 Q ss_pred eEEeeccCcEEEEEecccceecccCCcccccC-cccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 166 SKRYNPETDTWYYVITDVYRNVVSGYFNEDIP-EEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVR 244 (533) Q Consensus 166 k~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~-~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~R 244 (533) .++..+... +.. .+.+..+..++ |...++..|.--.+. ++|.|.|.+|..+|-..+......+.+--.- T Consensus 141 --~~d~~~~l~-~~~------~~~~~~g~~lp~~~~~i~~~~~~~~g~-p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~y 210 (488) T protein:vir:99 141 --RYDQDGGLR-LLT------PNNMFEGEPCPAPYFWHFSTGADNDDE-PYGLGLAHWLYWPVFFKRNGIKFWLIFLDKF 210 (488) T ss_pred --eecCCCceE-Eec------cCCCCCccccccCceEEEEeecCCCCC-cccchHHHHHHHHHHHHHhhHHHHHHHHHHc Confidence 344444322 211 11223345554 445555556555554 7999999999999999999998888875433 Q ss_pred cccceeeecC-CCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCC Q lcl|Aclame:pro 245 SVDRRVFYVD-VGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSK 323 (533) Q Consensus 245 APeRr~fyid-vGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~n 323 (533) .-.=|+..++ .|.-+..| ...++.+ ....+ | .+-| +| .|++|+.+..++ T Consensus 211 G~P~~igky~~~~a~~~ek-~~l~~av-~~~~~----~--~~~v-----------------iP-----~~~~ie~~ea~~ 260 (488) T protein:vir:99 211 GMPTAVGRYDDKTATPEDK-AKLLAAL-HAIQT----D--SAII-----------------MP-----AGMQAELLEAGR 260 (488) T ss_pred CCceeeeecCCCCCCHHHH-HHHHHHH-HHHhc----C--cEEE-----------------ec-----CCceeEEeecCC Confidence 3333344443 34222221 1222222 22111 1 1221 11 357788775332 Q ss_pred CC-h--HHHHHHHHHHHHHhcCCCeeeccCCCCc-cchhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh-----hccC-CC Q lcl|Aclame:pro 324 VD-L--AEDVEYMLNRLISALKVPKAFIGYEGDV-NAKNTLATQDIKFNNTIKRIQGFFVEELERMVR-----MNKE-FA 393 (533) Q Consensus 324 lg-~--i~Dv~Yf~~kLy~aL~VP~srl~~~~~~-gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qLi-----lk~i-~t 393 (533) .+ . ..=++|..+++-+++-= .-|..+++. +++..-+-+++ |...++.-.+.+.+.|.+||| ++.- .. T Consensus 261 ~~~~~~~~li~~~d~~Isk~iLG--qtlts~~~~Gs~a~~~vh~~v-~~d~~~aDa~~i~~tln~~li~~l~~~N~~~~~ 337 (488) T protein:vir:99 261 SGTADYKTLHDTMDATIAKVGLG--QVASTQGTPGRLGNDDLQADV-RLDLVKADADLICESFNLGPARWLTEWNFPGAQ 337 (488) T ss_pred CChHHHHHHHHHHHHHHHHHHhh--hhhcccccccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcC Confidence 11 1 22389999998877522 223334333 44444444444 455666666667777766664 3321 11 Q ss_pred ccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccc Q lcl|Aclame:pro 394 DQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGW-VREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETT 472 (533) Q Consensus 394 ~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~py-vgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~ 472 (533) ..-+.|.+..+ .+..-..+++..|..+-.| +.+.|+++.+. ++... .+++.. T Consensus 338 ~p~~~~~~~e~------edl~~~a~~~~~l~~~~G~~i~~~~i~e~~G-ip~~~--------------------~~~~~~ 390 (488) T protein:vir:99 338 PPRVYRVIEEP------EDITAKAERDEKVFRMSGFRPTRGYVQETYG-VEVES--------------------TQAEAT 390 (488) T ss_pred CceeEecCCCc------ccHHHHHHHHHHHHhhcCCCCCHHHHHHHcC-CCCcc--------------------cccccc Confidence 11123333222 2333345555555544333 66777775543 22210 010000 Q ss_pred hhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCC-c---------ccCCCCCCCC Q lcl|Aclame:pro 473 PADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGG-G---------EEELPFPEEE 533 (533) Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~---------~~~~~~~~~~ 533 (533) ...|...+. + +.......-.+..+.. ++.... . -++-.-|++- T Consensus 391 -------~~~~~~~~~---~------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~a~s~ee~ 443 (488) T protein:vir:99 391 -------APTPSTEFA---E------GDQPSDPAAAMAPQLA--EAMQPVVGNWTTQLRTLIEQASSLEDL 443 (488) T ss_pred -------cCCCcccCC---C------CCCCCCchHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCHHHH Confidence 000000000 0 0000000000000000 000000 0 0000000000 No 182 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=97.10 E-value=0.00017 Score=41.22 Aligned_cols=333 Identities=12% Similarity=0.070 Sum_probs=147.2 Q ss_pred cchhhhhhhH-HHHHHh----hcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcCh Q lcl|Aclame:pro 4 LEKYKKLNEA-VNFTNF----LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDP 78 (533) Q Consensus 4 ~~~w~k~de~-~~~~~~----~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~P 78 (533) |.+=++.-.+ ..++.. ....|+|+-|.-.-..+.+ .+.. ....++.+|..-+ +...|.+-+|.- | T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~----~~~~-~~~~~~~~~~pp~-~~~~la~~~~a~----~ 70 (344) T protein:vir:56 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDI----LDYV-ECISNGRWYEPPV-SFTGLAKSLRAA----V 70 (344) T ss_pred CCCCCCCCCchhhHHhhcCCCceEEEEcCCceeecCcchh----hhHH-HhhhcCccccCCC-CHHHHHHHHhhh----h Confidence 2222221111 111111 1133444322211000000 0111 1122333333333 444566666643 2 Q ss_pred hHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeE Q lcl|Aclame:pro 79 LISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQ 158 (533) Q Consensus 79 EV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr 158 (533) ...+||--.+|... +.+- -+.-++.. .| ...+..+++.|+.|+.++.+. .+.+.+|. T Consensus 71 ~h~s~i~~k~n~l~-~~~~--------Pnp~~t~~---------~f----~~~~~d~ll~Gnay~~~~rn~-~G~~~~L~ 127 (344) T protein:vir:56 71 HHSSPIYVKRNILA-STFI--------PHPWLSQQ---------DF----SRFVLDFLVFGNAFLEKRYST-TGKVIRLE 127 (344) T ss_pred hhCccceehhhhHH-hhcC--------CCCCCCHH---------HH----HHHHHHHHhcCCeEEEEEECC-CCcEEEEE Confidence 23344443333211 1110 11112222 13 235567888999999998764 45688999 Q ss_pred EcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 VVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALM 238 (533) Q Consensus 159 ~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalV 238 (533) .|+|.+|++..+.. . ||.++. ++....+++.+|+|+..-.+.+ +-||+|-+..|+..+..=...+... T Consensus 128 pl~~~~v~~~~~~~--~-~~~~~~-------~g~~~~~~~~dIiHir~~~~~~-~~~Gls~~~~a~~si~l~~~a~~~~- 195 (344) T protein:vir:56 128 TSPAKYTRRGVEED--V-YWWVPS-------FNEPTAFAPGSVFHLLEPDINQ-ELYGLPEYLSALNSAWLNESATLFR- 195 (344) T ss_pred EeCCceeEEeecCC--E-EEEEec-------CCeEEEEcCccEEEECCCCCCC-CcccccHHHHHHHHHHHHHHHHHHH- Confidence 99999998765543 3 333322 2445668899999997432222 3489998888777665433332211 Q ss_pred HHHHhc--cccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCccee Q lcl|Aclame:pro 239 LYRVVR--SVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEI 316 (533) Q Consensus 239 IyRi~R--APeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi 316 (533) .|... |-..-|+|+.-+++-+. +. ..+..+++.. +-...|. .|+ .-.|- +...|.++ T Consensus 196 -~~~f~NGa~pg~Il~~~d~~ls~e-~~---~~lk~~~~~~--~g~~~~r-----------~l~--l~~p~-g~~~G~~~ 254 (344) T protein:vir:56 196 -RKYYENGAHAGYIMYVTDAVQDRN-DI---EMLRENMVKS--KGRNNFK-----------NLF--LYAPQ-GKADGIKI 254 (344) T ss_pred -HHHHhccCCCceEEEecCCCCCHH-HH---HHHHHHHHHh--cCCCCcc-----------ceE--EecCC-CCccceeE Confidence 12222 32344555543344333 33 3333333321 1011111 110 00111 11235566 Q ss_pred eecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCC-ccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCC Q lcl|Aclame:pro 317 DILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGD-VNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEF 392 (533) Q Consensus 317 ~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~-~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~ 392 (533) .-|.-. ...-++=-++-.+.+.++.+||...|+.-++ .+-.+.+.-...-|.+ -|.-|+.+|.++.. -|. ..++ T Consensus 255 ~pis~~~~d~qf~e~k~~s~~eIa~afrVPp~llGi~~~~t~~~~n~eq~~~~f~~~tL~Pl~~~ie~~n~-~l~-~~~~ 332 (344) T protein:vir:56 255 IPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIREING-WIG-QEVI 332 (344) T ss_pred EEcCCChHHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHh-hhc-cccc Confidence 644211 1111122345566799999999999985432 2222334443444544 46667777765432 222 1112 Q ss_pred CccceeEEecCCcH Q lcl|Aclame:pro 393 ADQDFRLVMNRSNS 406 (533) Q Consensus 393 t~eew~~~f~~dn~ 406 (533) .-. .|....|+- T Consensus 333 ~F~--~y~l~~~~~ 344 (344) T protein:vir:56 333 RFK--NYSLDTDNG 344 (344) T ss_pred cCC--CccccccCC Confidence 111 122222332 No 183 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=97.08 E-value=0.00018 Score=41.11 Aligned_cols=355 Identities=15% Similarity=0.087 Sum_probs=148.0 Q ss_pred HHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceee---- Q lcl|Aclame:pro 17 TNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECT---- 92 (533) Q Consensus 17 ~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneai---- 92 (533) =.|-+++.||+.... +.+ -...++.. ++. ...+.+-|.+||+.|++.+= T Consensus 1 Mg~f~~~~~~~~~~~-------~~~--~~~~~~~~----------~~~--------~~~~~~~v~~~v~~IA~~iA~lp~ 53 (378) T protein:vir:94 1 MNLFGKVVSFSRGKL-------NND--TQRVTAWQ----------NEA--------VEYTSAFVTNIHNKIANEITKVEF 53 (378) T ss_pred CCccccchhcccccc-------cCC--cceeeeec----------cch--------hHHHHHHHHHHHHHHHhhhhhCce Confidence 112222233322111 110 00011110 110 11123458899999997632 Q ss_pred --e-cCCCCceeeeecccccccHHHHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcC Q lcl|Aclame:pro 93 --I-PNENGNIVDVVTKDIELAKAILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVS 161 (533) Q Consensus 93 --v-~d~~~~~v~v~l~~~e~s~si~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ld 161 (533) + ...++..+. .. .+..+ ..+.+||+ -....+..+..++.+|+.|.+++.++..+.+ .++. T Consensus 54 ~~~~~~~~~~~~~-~~--~~~~~---~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~~---~~l~ 124 (378) T protein:vir:94 54 NHVKYKKSDVGSD-TL--ISMAG---SDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGEL---LDLL 124 (378) T ss_pred eeEEEcccCcccc-cc--ccccc---chHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCceE---EEEE Confidence 1 111111110 00 00111 22344443 3456788888999999999998876543333 2322 Q ss_pred cceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 162 PYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYR 241 (533) Q Consensus 162 P~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyR 241 (533) |.. ....+++++|+|+.... + +..|+|-|+.|.+.+.. ++ T Consensus 125 p~~---------------------------~~~~~~~~diiH~~~~~--~-~~~g~s~l~~~~~~i~~------~~---- 164 (378) T protein:vir:94 125 FAD---------------------------DKKEYKPEELVRLTSPF--Y-INEDTSILDNALASIQT------KL---- 164 (378) T ss_pred ecC---------------------------CeeEeeeeeeEEecCcC--C-ccchhHHHHHHHHHHHH------HH---- Confidence 211 12235678999997432 2 24678888887765432 11 Q ss_pred HhccccceeeecCC-CCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecC Q lcl|Aclame:pro 242 VVRSVDRRVFYVDV-GNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQ 320 (533) Q Consensus 242 i~RAPeRr~fyidv-Gnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLp 320 (533) ..+-.+ .++.+ |.+....+.+....+...|++..-.+.+.| + + .| ..|.+++-|. T Consensus 165 -~~~~~~--gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~-~---------~-vl----------~~g~~~~~l~ 220 (378) T protein:vir:94 165 -EQGKLR--GLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNG-L---------T-PV----------DNKTEIVELK 220 (378) T ss_pred -hccccc--ceeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccc-c---------e-ec----------CCCceEEEcc Confidence 112112 23333 345555556566666666655443333222 2 1 11 1234444442 Q ss_pred CC-CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCC---cc Q lcl|Aclame:pro 321 GS-KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFA---DQ 395 (533) Q Consensus 321 G~-nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t---~e 395 (533) =. ...++...+|..+.+.+++|||...|.. ..++ .+-.-|..+ +.-+-+++.+.|.+.|+....-. .. T Consensus 221 ~~~~~~~~~~~~~~~~~Ia~~fgVP~~~l~~-----~~se--~~~~~f~~~tL~P~~~~ie~~l~~~Ll~~~er~~g~~~ 293 (378) T protein:vir:94 221 KDYSVLNKDEIDLIKSELLTGYFMNENILLG-----TASQ--EQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGN 293 (378) T ss_pred CChhhhhHHHHHHHHHHHHHHhCCCHHHhcC-----ChHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhc Confidence 11 2234677889999999999999999952 1111 112224332 23333445566666665332100 00 Q ss_pred ce--eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccch Q lcl|Aclame:pro 396 DF--RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTP 473 (533) Q Consensus 396 ew--~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~ 473 (533) .+ ++.|..+. +.. .-++.|++.+..+ .+..-||..|.-. .++ ++|-++-|+-..+ T Consensus 294 ~~~~~~~f~~~~----l~~-~d~~~~~~~~~~~----------~~~G~~T~NE~R~-----~~g---l~p~~gGD~~~~~ 350 (378) T protein:vir:94 294 LYYERIIVDNQL----FKF-ATLKELIDLYHEN----------INGPIFTQNQLLV-----KMG---EQPIEGGDVYIAN 350 (378) T ss_pred ccccceeecchh----hhh-cCHHHHHHHHHHH----------HhCCCcCHHHHHH-----HhC---CCCCCCCCeeeec Confidence 01 13332222 111 1223455554442 2334566533211 122 2222221111111 Q ss_pred hhhcCccCCcccccCCCcccccCCCCCccCCCccCcC Q lcl|Aclame:pro 474 ADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLG 510 (533) Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (533) .-..|+..+...+... .+...++|-|=+ T Consensus 351 -----~n~~~~~~~~~~~~~~----~~~~~~~e~~n~ 378 (378) T protein:vir:94 351 -----LNAVAVKNLSDLQGSR----KDVTSTDETNNQ 378 (378) T ss_pred -----ccccccccchhhcCCc----CCCCCCCCCCCC Confidence 1111222221111110 111111110000 No 184 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=97.07 E-value=0.00018 Score=41.09 Aligned_cols=430 Identities=12% Similarity=0.044 Sum_probs=162.0 Q ss_pred hhhhhhHHHHHHhhcccc-cccCcccCCCCcccCCCCCccccc-----hhh-------------cccccCcccc----ch Q lcl|Aclame:pro 7 YKKLNEAVNFTNFLSPMY-GMGAPHGAGGSSMIPINMYHPFAT-----AGY-------------ASRFYGGIEF----NR 63 (533) Q Consensus 7 w~k~de~~~~~~~~~~~~-s~~~p~~~~gas~i~~~~~~~~~~-----~~~-------------~~~~ygg~~~----n~ 63 (533) --|++|-+-+..+.-++- .|.... .+.---+..+.+...+ .++ ...+|-|... .. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~~~~ 78 (511) T protein:vir:93 1 MLKVNEFETDTDLRGNINYLFNDEA--NVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELT 78 (511) T ss_pred Cccccchhhhhhhhhhhhhhhhhhh--CCcccccchhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccccC Confidence 223333333322221111 111111 1100000000000000 000 0011111100 00 Q ss_pred --HHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCce Q lcl|Aclame:pro 64 --FFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDM 141 (533) Q Consensus 64 --~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~ 141 (533) ......-+++ .++-+.-+++..+...+ +.|+.+...+.+ .++....|.+.-+|+.+..++.+..++.|+. T Consensus 79 ~~~~~~~~~~ki--~~n~~k~Iv~~~~~yl~-----g~p~~~~~~d~~-~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a 150 (511) T protein:vir:93 79 RRKEEYMADNRV--AHDYASYISDFINGYFL-----GNPIQYQDDDKD-VLEVIEAFNDLNDVESHNRSLGLDLSIYGKA 150 (511) T ss_pred cCcccccCccee--ecchHHHHHHHHhhhhc-----ccCeeeccCChH-HHHHHHHHHhhcCHhHHHHHHHHHHHhcCee Confidence 0000000001 12233344444443332 567777665432 2222334444457999999999999999999 Q ss_pred eEEEeecCCCCCeeeeEEcCcceeeEEeeccCc--EEE----E-----------------Eeccccee--cccCCccc-- Q lcl|Aclame:pro 142 FLHILEKGSDGTIEKFQVVSPYIFSKRYNPETD--TWY----Y-----------------VITDVYRN--VVSGYFNE-- 194 (533) Q Consensus 142 ~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~--~e~----y-----------------~y~~~~~~--~~~~~~~~-- 194 (533) |.+...|. +|-..+..+||+.+-++++..+. ..+ | +|+....+ ...++... T Consensus 151 y~~vy~de--~~~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~ 228 (511) T protein:vir:93 151 YELMIRNQ--DDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKL 228 (511) T ss_pred EEEEEeCC--CCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccc Confidence 99988763 45567999999999999986543 222 1 12222111 00000000 Q ss_pred ----------ccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHH-HHHHhccccceeeecCCCCCchhhH Q lcl|Aclame:pro 195 ----------DIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALM-LYRVVRSVDRRVFYVDVGNVPPDKI 263 (533) Q Consensus 195 ----------~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalV-IyRi~RAPeRr~fyidvGnlp~~kA 263 (533) .+..=.+++|.. ...|.|-++.++....-|-.+--.++ .-+-++.|-+ ++- |.... T Consensus 229 ~~~~~~~~~~~~g~vPvv~~~n------n~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l---v~~-G~~~~--- 295 (511) T protein:vir:93 229 TPRENGFESHSFERMPITEFSN------NERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAML---LIK-GNLNL--- 295 (511) T ss_pred ccccccccccCCCccceEEecC------CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCcce---eee-cCccc--- Confidence 000011333321 13566766665555443332221111 1122222211 111 11000 Q ss_pred HHHHHHHHHHhhhceeeccCCCeeecccccchhhhHH-hh--hhcccccCCCcceeeecCCC-CCC-hHHHHHHHHHHHH Q lcl|Aclame:pro 264 NEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESIL-KD--YFIPRRGDRRAVEIDILQGS-KVD-LAEDVEYMLNRLI 338 (533) Q Consensus 264 eqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~sml-eD--ywlprR~g~~gtEi~TLpG~-nlg-~i~Dv~Yf~~kLy 338 (533) .++++..+++. .+..+ .. ..........+..+..|... +.. .-.-+.-+.+.++ T Consensus 296 -------------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~ 354 (511) T protein:vir:93 296 -------------------DPVEVRKQKEA--NVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIH 354 (511) T ss_pred -------------------Cchhhcccccc--cceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHH Confidence 00011111110 00000 00 00111112223344444321 332 2233666788889 Q ss_pred HhcCCCeeeccCCCCccchhhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--hh-----ccCC-Cccce---eEEecCCc Q lcl|Aclame:pro 339 SALKVPKAFIGYEGDVNAKNTLAT--QDIKFNNTIKRIQGFFVEELERMV--RM-----NKEF-ADQDF---RLVMNRSN 405 (533) Q Consensus 339 ~aL~VP~srl~~~~~~gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--il-----k~i~-t~eew---~~~f~~dn 405 (533) +-.++|---.+.- .|..|.++. -......-+.+.++.|...|++.+ |+ ++.. ...+| ++.|.+.- T Consensus 355 ~~s~~P~~~~~~~--~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~~~~~~d~~~i~~~f~~~~ 432 (511) T protein:vir:93 355 MFTNTPNMKDDNF--SGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNRNL 432 (511) T ss_pred HHhCCcccccccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccccceEEeCCCC Confidence 9999996433221 133333333 222223345555556766655432 21 2322 23455 57776432 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCccc Q lcl|Aclame:pro 406 SIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIE 485 (533) Q Consensus 406 ~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (533) --.+. +.++++..+..-++++++.+.+-..+| -.++-+.|++|..+.... .......++ T Consensus 433 p~n~~-------e~~~~~~kl~g~iS~et~~~~l~~v~d-~~~E~~ri~~E~~~~~~~-----------~~~~~~~~~-- 491 (511) T protein:vir:93 433 PKSLI-------EELKAYIDSGGKISQTTLMSLFSFFQD-PELEVKKIEEDEKESIKK-----------AQKGIYKDP-- 491 (511) T ss_pred CCCHH-------HHHHHHHHHhccCchHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHH-----------HhhhcccCC-- Confidence 22222 233445555567899998876544443 333345555554311100 000001111 Q ss_pred ccCCCcccccCCCCCccCCCccCcCcccCCc Q lcl|Aclame:pro 486 SPRGRTEFDFGTEGGEELGGELNLGGAFEEF 516 (533) Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (533) -+....+.+ .+++ ..+.+++ T Consensus 492 ~~~~~~~~~--------~~~~---~~~~~~~ 511 (511) T protein:vir:93 492 RDINDDEQD--------DDTK---DTVDKKE 511 (511) T ss_pred CCCCCCCCC--------Cccc---ccccccC Confidence 000000000 0000 0011111 No 185 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=97.04 E-value=0.0002 Score=40.89 Aligned_cols=403 Identities=12% Similarity=0.051 Sum_probs=161.0 Q ss_pred HHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCcc-ccchHHH-----------HHHHHHHhhc---- Q lcl|Aclame:pro 13 AVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGI-EFNRFFL-----------YDMYDRMDYT---- 76 (533) Q Consensus 13 ~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~-~~n~~~l-----------i~~YR~m~~~---- 76 (533) +. +.+|.++.-.--+ .+| ..+.+ ..+.+|-.....|.... ..+..++ +.+|+.+... T Consensus 1 ~~-~~~~~~~~~~~~~---~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~ 73 (492) T protein:vir:94 1 MQ-FIQLISQVAQALI---KGG-NILYP--SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQR 73 (492) T ss_pred Ch-HHHHHHHHHHHHh---cCC-ceeec--CccchhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc Confidence 11 2223332221111 122 11111 11222222222222211 1111111 2223222111 Q ss_pred --------------------------ChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh--hhHHHH Q lcl|Aclame:pro 77 --------------------------DPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI--NIEKNA 128 (533) Q Consensus 77 --------------------------~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll--~f~~~~ 128 (533) ++-+.-+|+..+... =+.|+.+..++.+..+ .+..++ +|+.+. T Consensus 74 ~~I~~~~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl-----~G~p~~~~~~d~~~~~----~l~~~~~n~~~~~~ 144 (492) T protein:vir:94 74 PDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYI-----VGKPIAFKHTDDEVVK----RIDEVLGNRFDDKL 144 (492) T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHhhh-----cccCceeccCchHHHH----HHHHHHhccHHHHH Confidence 122222233333221 1456666655533333 333333 688999 Q ss_pred HHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeecc--CcEEEEE-------------ecccc--eecccCC Q lcl|Aclame:pro 129 YPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPE--TDTWYYV-------------ITDVY--RNVVSGY 191 (533) Q Consensus 129 ~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~--g~~e~y~-------------y~~~~--~~~~~~~ 191 (533) .+.++..++.|+.|++...|. +|-..++.++|+.+-++++.. ++..+++ |+... .+...++ T Consensus 145 ~~~~~~a~~~G~a~~~v~~d~--dg~~~~~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~~~y~~~~v~~~~~~~~ 222 (492) T protein:vir:94 145 HSVLTGASNKGIEWLHPYLDE--EGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENG 222 (492) T ss_pred HHHHHHHhhCCeEEEEEEecC--CCceEEEEEcccceEEEEcCCCCCceEEEEEEEeeccceeEEEEecCeEEEEEEecC Confidence 999999999999999987763 455679999999999998743 2222211 11100 0000000 Q ss_pred c---------c--------cccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHH-HHHHHHHHHhccccceeeec Q lcl|Aclame:pro 192 F---------N--------EDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLM-EDALMLYRVVRSVDRRVFYV 253 (533) Q Consensus 192 ~---------~--------~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~-EdalVIyRi~RAPeRr~fyi 253 (533) . . +.+..=.++.|.- ...|.|-++..+....-+-++ =+....-+-...|-+-+.-. T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n------n~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~ 296 (492) T protein:vir:94 223 SLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN------NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY 296 (492) T ss_pred eeeeccccccccccccccccCCCccceEEecC------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecC Confidence 0 0 0000001222211 135666666544444333321 11112223333332222111 Q ss_pred CCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC-CCCCh-HHHHH Q lcl|Aclame:pro 254 DVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG-SKVDL-AEDVE 331 (533) Q Consensus 254 dvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG-~nlg~-i~Dv~ 331 (533) +..+. .+..+ .+..++...-+++. .++.|-. .+.+. -.-+. T Consensus 297 ~~~~~-----~~~~~------------------------------~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~ 339 (492) T protein:vir:94 297 DDQEL-----PEFKR------------------------------LLRYYGAIKVSDNG--GVDTIQVEVPVENSKKYLD 339 (492) T ss_pred Ccccc-----hhhHH------------------------------HHhhccceecCCCC--cceeEeccCCHHHHHHHHH Confidence 11111 11111 11111111112222 2333322 13322 23367 Q ss_pred HHHHHHHHhcCCCeeeccCCCCc-cchhhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--hhccCCCc---cceeEEecC Q lcl|Aclame:pro 332 YMLNRLISALKVPKAFIGYEGDV-NAKNTLAT--QDIKFNNTIKRIQGFFVEELERMV--RMNKEFAD---QDFRLVMNR 403 (533) Q Consensus 332 Yf~~kLy~aL~VP~srl~~~~~~-gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--ilk~i~t~---eew~~~f~~ 403 (533) -+.+.+|+-.++|---.+ .| |..|..+. -+.....-+.+.++.|...|++-+ |++-.-.. .+.++.|.+ T Consensus 340 ~l~~~I~~~s~~p~~~~~---~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~i~v~f~~ 416 (492) T protein:vir:94 340 ELYQKIMLFGQAVDFSSD---KFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNY 416 (492) T ss_pred HHHHHHHHHhCCcCCCcc---ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeEEecC Confidence 888899999999953222 22 33333332 233344456666777877665543 33221112 234566654 Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCc Q lcl|Aclame:pro 404 SNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSP 483 (533) Q Consensus 404 dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (533) ..--. +.+.++++..+.+.+++.++.+.+-..+| -.++-++|++|..+.....+..+ ..+. + T Consensus 417 ~~p~~-------~~e~~~~~~kl~giiS~et~~~~l~~v~d-~~~E~eri~~E~~~~~~~~~~~~-------~~~~--~- 478 (492) T protein:vir:94 417 NKVAN-------TELQVQTAQQSMGIVSHETVLENHPFVED-LQAELERIEQEQMEYNKQLPNLD-------DGGA--D- 478 (492) T ss_pred CCCCC-------HHHHHHHHHHHhccCchHHHHHhCCCCCC-HHHHHHHHHHHHHHHHhhccccc-------cccC--C- Confidence 33322 22234566666788999999987655554 22333445544321111110000 0000 0 Q ss_pred ccccCCCcccccCCCCCccCCCc Q lcl|Aclame:pro 484 IESPRGRTEFDFGTEGGEELGGE 506 (533) Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~ 506 (533) ..+. .+..+...+| T Consensus 479 -~~~~--------~~~~~~~e~e 492 (492) T protein:vir:94 479 -SAQQ--------QERSNNKESE 492 (492) T ss_pred -CCcc--------ccCCccccCC Confidence 0000 0000100111 No 186 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=97.04 E-value=0.0002 Score=40.89 Aligned_cols=399 Identities=11% Similarity=0.023 Sum_probs=152.8 Q ss_pred hcccccccCcccCCCCcccCCCCCccccc-hhhcccccCccccchHHHHHHHHHHhh----------------------- Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMIPINMYHPFAT-AGYASRFYGGIEFNRFFLYDMYDRMDY----------------------- 75 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i~~~~~~~~~~-~~~~~~~ygg~~~n~~~li~~YR~m~~----------------------- 75 (533) |-...++ |-...-+.++--.......+ .-.-..+ ...-...+.+|..+.. T Consensus 1 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~----i~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ 74 (474) T protein:vir:95 1 MINIIRM--PWDKPYGEEVVEQMKPKVETQEEMIIRL----INNHKQKLKDINVGQKYYDKDNDINYQAYKQDLHGNIDY 74 (474) T ss_pred CcccccC--CCCCCCCcchhhhccccccchHHHHHHH----HHHHHHHHHHHHHHHHHhcccCccccccchhhhcccccc Confidence 2222222 11111111110000000000 0000000 0000011112222111 Q ss_pred -------cChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeec Q lcl|Aclame:pro 76 -------TDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEK 148 (533) Q Consensus 76 -------~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid 148 (533) .++-..-.|+..+...+ +.|+.+...+.+..+. .+.+.. -+|+....++++.+++.|+.|.+...| T Consensus 75 ~~~~~ki~~n~~k~Iv~~~~~yl~-----g~p~~~~~~~~~~~~~-l~~~~~-n~~~~~~~~l~~~~~~~G~~~~~~~~d 147 (474) T protein:vir:95 75 TKPDWRITTNFHQNLVDQKVSYVA-----GKPVTYAHDDDKVLDV-IHQVLD-TRWDNKLIDILTAASNKGIDWLQVYIN 147 (474) T ss_pred cccccccccchHHHHHHhhhhhhc-----ccCceeccCChHHHHH-HHHHHh-ccHHHHHHHHHHHHhhCCeEEEEeeeC Confidence 12233333333333322 4566666655322222 222222 268999999999999999999998876 Q ss_pred CCCCCeeeeEEcCcceeeEEeeccC--cEE-------------EEEecccce--ecccCCc-----------------cc Q lcl|Aclame:pro 149 GSDGTIEKFQVVSPYIFSKRYNPET--DTW-------------YYVITDVYR--NVVSGYF-----------------NE 194 (533) Q Consensus 149 ~~k~gI~elr~ldP~~ik~v~d~~g--~~e-------------~y~y~~~~~--~~~~~~~-----------------~~ 194 (533) . +|-..++.++|+.+-++++... +.. +-+|+.... +...++. .+ T Consensus 148 ~--~~~~~i~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (474) T protein:vir:95 148 E--DGELKLFRVPAEQAIPIWTDKEREQLNAFIRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTG 225 (474) T ss_pred C--CCceEEEEEcccceEEEEcCCCCCceEEEEEEEeecCeeEEEEEeCCeEEEEEEcCCceeeccccccccccCccccc Confidence 3 4666899999999999986432 211 111222111 0000000 00 Q ss_pred ccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHH-HHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHH Q lcl|Aclame:pro 195 DIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMED-ALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQ 273 (533) Q Consensus 195 ~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed-alVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~ 273 (533) .+..=.+++|. + ...|.|-|+..+.....+-.+=- ....-+-.+.|-.-+.-.+.-++ .+.... T Consensus 226 ~~~~vPvv~~~-----n-n~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~-----~~~~~~---- 290 (474) T protein:vir:95 226 SWERVPFIAFK-----N-NPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYILRGYEGEDL-----SEFMEG---- 290 (474) T ss_pred CCCccceEEec-----C-CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcCCCcccc-----cchhhh---- Confidence 01111122222 1 13566666654444443332111 11111223333221111110010 011111 Q ss_pred hhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCCh-HHHHHHHHHHHHHhcCCCeeeccCCC Q lcl|Aclame:pro 274 YKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDL-AEDVEYMLNRLISALKVPKAFIGYEG 352 (533) Q Consensus 274 ~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~-i~Dv~Yf~~kLy~aL~VP~srl~~~~ 352 (533) +..+++-.-+++.+.+.-|-+. +.+. -.-+.-+.+.+|...++|---. . T Consensus 291 --------------------------~~~~~~i~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~I~~~s~~p~~~~---~ 340 (474) T protein:vir:95 291 --------------------------LKYYKAINVSSDGGVETIQVEV-PVASTKEYLDMMRAYIVEFGQGVDFQT---D 340 (474) T ss_pred --------------------------hhccceeeccCCCceeEEeccC-CHHHHHHHHHHHHHHHHHHhCCcCccc---c Confidence 1111111111121222222121 2222 2337778889999999995322 2 Q ss_pred Cc-cchhhhhHH--HHHHHHHHHHHHHHHHHHHhhh--hhhc--c-CCCccceeEEecCCcHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 353 DV-NAKNTLATQ--DIKFNNTIKRIQGFFVEELERM--VRMN--K-EFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAE 424 (533) Q Consensus 353 ~~-gr~~eI~rd--e~kF~kfI~rLr~~F~~~l~~q--Lilk--~-i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~ 424 (533) +| |..+..+.. ......-+.+.++.|...|++- ||++ | .....+.+++|.+.---.+...+. ++. T Consensus 341 ~~~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~~~d~~~i~i~f~~~~p~~~~e~a~-------~~~ 413 (474) T protein:vir:95 341 KFGSATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNKIKLDAKEIEITFNFNVMVNDLEQSQ-------IGA 413 (474) T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecCCCccCHHHHHH-------HHH Confidence 22 333333321 1112234455555666655543 2332 2 222334567786544433333332 333 Q ss_pred HhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCC Q lcl|Aclame:pro 425 RLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELG 504 (533) Q Consensus 425 ~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (533) + -+.+|++++...+-..+| -.++-+.|++|..+.... ... ..+.++++..+.+ T Consensus 414 ~-~giiS~et~~~~lp~v~D-~~~E~eri~~E~~~~~~~-------~~~------------------~~~~~~~~~~~~~ 466 (474) T protein:vir:95 414 Q-SQYLSKETLVRHHPWVDD-PKAELERLDEEQLELNKQ-------LPN------------------LDDGGADGAQQQQ 466 (474) T ss_pred H-cCCCChHHHHHhCCCCCC-HHHHHHHHHHHHHHHHhh-------ccc------------------cccccCCCCCCcC Confidence 3 378999998877655544 233334555554311100 000 0000111111000 Q ss_pred CccCcCcccCCch Q lcl|Aclame:pro 505 GELNLGGAFEEFE 517 (533) Q Consensus 505 ~~~~~~~~~~~~~ 517 (533) .+.+.+.+ T Consensus 467 -----~~~~~e~~ 474 (474) T protein:vir:95 467 -----QSENNQSK 474 (474) T ss_pred -----CCCccccC Confidence 01111111 No 187 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=97.04 E-value=0.0002 Score=40.89 Aligned_cols=399 Identities=11% Similarity=0.023 Sum_probs=152.8 Q ss_pred hcccccccCcccCCCCcccCCCCCccccc-hhhcccccCccccchHHHHHHHHHHhh----------------------- Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMIPINMYHPFAT-AGYASRFYGGIEFNRFFLYDMYDRMDY----------------------- 75 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i~~~~~~~~~~-~~~~~~~ygg~~~n~~~li~~YR~m~~----------------------- 75 (533) |-...++ |-...-+.++--.......+ .-.-..+ ...-...+.+|..+.. T Consensus 1 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~----i~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ 74 (474) T protein:vir:96 1 MINIIRM--PWDKPYGEEVVEQMKPKVETQEEMIIRL----INNHKQKLKDINVGQKYYDKDNDINYQAYKQDLHGNIDY 74 (474) T ss_pred CcccccC--CCCCCCCcchhhhccccccchHHHHHHH----HHHHHHHHHHHHHHHHHhcccCccccccchhhhcccccc Confidence 2222222 11111111110000000000 0000000 0000011112222111 Q ss_pred -------cChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeec Q lcl|Aclame:pro 76 -------TDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEK 148 (533) Q Consensus 76 -------~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid 148 (533) .++-..-.|+..+...+ +.|+.+...+.+..+. .+.+.. -+|+....++++.+++.|+.|.+...| T Consensus 75 ~~~~~ki~~n~~k~Iv~~~~~yl~-----g~p~~~~~~~~~~~~~-l~~~~~-n~~~~~~~~l~~~~~~~G~~~~~~~~d 147 (474) T protein:vir:96 75 TKPDWRITTNFHQNLVDQKVSYVA-----GKPVTYAHDDDKVLDV-IHQVLD-TRWDNKLIDILTAASNKGIDWLQVYIN 147 (474) T ss_pred cccccccccchHHHHHHhhhhhhc-----ccCceeccCChHHHHH-HHHHHh-ccHHHHHHHHHHHHhhCCeEEEEeeeC Confidence 12233333333333322 4566666655322222 222222 268999999999999999999998876 Q ss_pred CCCCCeeeeEEcCcceeeEEeeccC--cEE-------------EEEecccce--ecccCCc-----------------cc Q lcl|Aclame:pro 149 GSDGTIEKFQVVSPYIFSKRYNPET--DTW-------------YYVITDVYR--NVVSGYF-----------------NE 194 (533) Q Consensus 149 ~~k~gI~elr~ldP~~ik~v~d~~g--~~e-------------~y~y~~~~~--~~~~~~~-----------------~~ 194 (533) . +|-..++.++|+.+-++++... +.. +-+|+.... +...++. .+ T Consensus 148 ~--~~~~~i~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (474) T protein:vir:96 148 E--DGELKLFRVPAEQAIPIWTDKEREQLNAFIRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTG 225 (474) T ss_pred C--CCceEEEEEcccceEEEEcCCCCCceEEEEEEEeecCeeEEEEEeCCeEEEEEEcCCceeeccccccccccCccccc Confidence 3 4666899999999999986432 211 111222111 0000000 00 Q ss_pred ccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHH-HHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHH Q lcl|Aclame:pro 195 DIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMED-ALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQ 273 (533) Q Consensus 195 ~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed-alVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~ 273 (533) .+..=.+++|. + ...|.|-|+..+.....+-.+=- ....-+-.+.|-.-+.-.+.-++ .+.... T Consensus 226 ~~~~vPvv~~~-----n-n~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~-----~~~~~~---- 290 (474) T protein:vir:96 226 SWERVPFIAFK-----N-NPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYILRGYEGEDL-----SEFMEG---- 290 (474) T ss_pred CCCccceEEec-----C-CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcCCCcccc-----cchhhh---- Confidence 01111122222 1 13566666654444443332111 11111223333221111110010 011111 Q ss_pred hhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCCh-HHHHHHHHHHHHHhcCCCeeeccCCC Q lcl|Aclame:pro 274 YKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDL-AEDVEYMLNRLISALKVPKAFIGYEG 352 (533) Q Consensus 274 ~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~-i~Dv~Yf~~kLy~aL~VP~srl~~~~ 352 (533) +..+++-.-+++.+.+.-|-+. +.+. -.-+.-+.+.+|...++|---. . T Consensus 291 --------------------------~~~~~~i~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~I~~~s~~p~~~~---~ 340 (474) T protein:vir:96 291 --------------------------LKYYKAINVSSDGGVETIQVEV-PVASTKEYLDMMRAYIVEFGQGVDFQT---D 340 (474) T ss_pred --------------------------hhccceeeccCCCceeEEeccC-CHHHHHHHHHHHHHHHHHHhCCcCccc---c Confidence 1111111111121222222121 2222 2337778889999999995322 2 Q ss_pred Cc-cchhhhhHH--HHHHHHHHHHHHHHHHHHHhhh--hhhc--c-CCCccceeEEecCCcHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 353 DV-NAKNTLATQ--DIKFNNTIKRIQGFFVEELERM--VRMN--K-EFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAE 424 (533) Q Consensus 353 ~~-gr~~eI~rd--e~kF~kfI~rLr~~F~~~l~~q--Lilk--~-i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~ 424 (533) +| |..+..+.. ......-+.+.++.|...|++- ||++ | .....+.+++|.+.---.+...+. ++. T Consensus 341 ~~~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~~~d~~~i~i~f~~~~p~~~~e~a~-------~~~ 413 (474) T protein:vir:96 341 KFGSATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNKIKLDAKEIEITFNFNVMVNDLEQSQ-------IGA 413 (474) T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecCCCccCHHHHHH-------HHH Confidence 22 333333321 1112234455555666655543 2332 2 222334567786544433333332 333 Q ss_pred HhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCC Q lcl|Aclame:pro 425 RLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELG 504 (533) Q Consensus 425 ~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (533) + -+.+|++++...+-..+| -.++-+.|++|..+.... ... ..+.++++..+.+ T Consensus 414 ~-~giiS~et~~~~lp~v~D-~~~E~eri~~E~~~~~~~-------~~~------------------~~~~~~~~~~~~~ 466 (474) T protein:vir:96 414 Q-SQYLSKETLVRHHPWVDD-PKAELERLDEEQLELNKQ-------LPN------------------LDDGGADGAQQQQ 466 (474) T ss_pred H-cCCCChHHHHHhCCCCCC-HHHHHHHHHHHHHHHHhh-------ccc------------------cccccCCCCCCcC Confidence 3 378999998877655544 233334555554311100 000 0000111111000 Q ss_pred CccCcCcccCCch Q lcl|Aclame:pro 505 GELNLGGAFEEFE 517 (533) Q Consensus 505 ~~~~~~~~~~~~~ 517 (533) .+.+.+.+ T Consensus 467 -----~~~~~e~~ 474 (474) T protein:vir:96 467 -----QSENNQSK 474 (474) T ss_pred -----CCCccccC Confidence 01111111 No 188 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=96.99 E-value=0.00022 Score=40.60 Aligned_cols=444 Identities=12% Similarity=0.060 Sum_probs=189.4 Q ss_pred CCC-cchhhhhhhHHHHHHhhcccccccCcccCCCCccc---CCCCCccccchhhcccccCccccchHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MPS-LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMI---PINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYT 76 (533) Q Consensus 1 ~~~-~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i---~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~ 76 (533) ||+ |-.|-+--... .++.+ .++.-....... +.+.-.|.-.+..-....+|+. ....+-|+.|... T Consensus 1 ~~~~~d~~g~p~~~~---~~~~~----~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~---~~~~~L~~~m~e~ 70 (528) T protein:vir:10 1 MAAIVDIYGNPLRTQ---QLRKQ----QTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQGHL---QAQAELFMDMEER 70 (528) T ss_pred CCeeECCCCCccccc---cccch----hhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhCCCH---HHHHHHHHHHHhh Confidence 555 33333322111 00000 001000000000 0000111111111122222333 3445667777667 Q ss_pred ChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh----hhHHHHHHHHHHHhhcCceeEEEeecCCC- Q lcl|Aclame:pro 77 DPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI----NIEKNAYPIIRNMIKYGDMFLHILEKGSD- 151 (533) Q Consensus 77 ~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll----~f~~~~~e~~R~wyvDGr~~~~kiid~~k- 151 (533) |++|.++++.+..-+...+..-.|- -.+....+.+.+.+.+.| +|+..+.++.. -+.+|-.++.++..... T Consensus 71 D~~i~s~l~~Rk~av~~~~w~I~p~---~~~~~~~~~~a~~v~~~l~~~~~f~~~i~~~ld-a~~~G~s~~Ei~w~~~~g 146 (528) T protein:vir:10 71 DAHLFAEMSKRKRAVLGLDWTIEPP---RNASAAEKADAEYLHELLLDLEGIEDLMLDCMD-GVGHGYSAIELDWSLQGR 146 (528) T ss_pred ChHHHHHHHHHHHHHhcCCceEecC---CCCCHHHHHHHHHHHHHHhCCccHHHHHHHHHh-hhhhcceeEEEEEeecCC Confidence 9999999999987655433221111 111122233444444444 36665555544 55689999998865422 Q ss_pred -CCeeeeEEcCcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHH Q lcl|Aclame:pro 152 -GTIEKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQL 230 (533) Q Consensus 152 -~gI~elr~ldP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqL 230 (533) -.+.++...||+.++ .+..++- .+... ..+..+..+++...++++|..-.+. ++|.|.|..|..+|-.- T Consensus 147 ~~~~~~~~~r~~~~f~--~~~~~~~-~l~~~------~~~~~g~~l~~~k~iv~~~~~~~g~-p~g~gLlr~~~w~~~fK 216 (528) T protein:vir:10 147 EWLPQAFDHRPQSWFQ--LNPDDQD-ELRLR------DNSIAGEVLQPFGWIMHKPRSRSGY-VARSGLFRVLAWPYLFK 216 (528) T ss_pred ceeEEEeeeeccccee--eccCCCc-EEecc------CCCCCceeecCCCeEEEeecCCCCC-ccccchHHHHHHHHHHH Confidence 235567777777543 3333321 12111 1234467788999999999777776 79999999999999998 Q ss_pred HHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccC Q lcl|Aclame:pro 231 RLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGD 310 (533) Q Consensus 231 rm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g 310 (533) +......+.+=-.-.-.=|+..++.|+-.+.| ...++.+. ...+ | .|-| +| T Consensus 217 ~~~~~~w~~f~E~yG~P~~igky~~~a~~~ek-~~L~~al~-~i~~----~--~~~i-----------------iP---- 267 (528) T protein:vir:10 217 HYSTADLAEMLEIYGLPIRLGKYPPGTPDEEK-VTLLRAVT-GLGH----A--AAGI-----------------IP---- 267 (528) T ss_pred HhhHHHHHHHHHHcCCCeEEEecCCCCCHHHH-HHHHHHHH-HHhh----C--cEEE-----------------ec---- Confidence 88888777665444444556666666422222 22222222 2111 1 1111 11 Q ss_pred CCcceeeecCCCC-CCh--HHHHHHHHHHHHHhcCCCeeeccCCC----Cccch-hhhhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 311 RRAVEIDILQGSK-VDL--AEDVEYMLNRLISALKVPKAFIGYEG----DVNAK-NTLATQDIKFNNTIKRIQGFFVEEL 382 (533) Q Consensus 311 ~~gtEi~TLpG~n-lg~--i~Dv~Yf~~kLy~aL~VP~srl~~~~----~~gr~-~eI~rde~kF~kfI~rLr~~F~~~l 382 (533) .|++|+.+..++ -+. ..=++|..+++-+++-= .-|..+. +.+++ +++- .++ +...++...+.+.+.| T Consensus 268 -~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLG--qtlTs~~~~g~~gS~Alg~vh-~~v-~~di~~aDa~~i~~tl 342 (528) T protein:vir:10 268 -ESMSIDFQEASKGSAEPFMAMMRWCDDSMSKAILG--GTLTSQTSESGGGAYALGQVH-NEV-RHDLLAADARQLAATL 342 (528) T ss_pred -CCceeEEeecCCCChhHHHHHHHHHHHHHHHHHhh--hhhhccccccccchhhhHHHH-HHH-HHHHHHHHHHHHHHHH Confidence 356777776321 111 22388999998777621 1222221 12222 2222 232 3444555555555555 Q ss_pred hhhhh-----hccCCC--ccce-eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHhcCChhhhHHHHHH Q lcl|Aclame:pro 383 ERMVR-----MNKEFA--DQDF-RLVMNRSNSIVEGERFAVIEQRIGIAERLKGW-VREDWIYSNILQIPYDLKPQEEVA 453 (533) Q Consensus 383 ~~qLi-----lk~i~t--~eew-~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~py-vgk~~i~k~il~~tde~~~q~~~i 453 (533) .+||| ++..-. +... ++.|... |-.+.....+++..|..+ .| |+++|+++++.- +. T Consensus 343 n~~li~~l~~~N~~~~~~~~~~p~~~~~~~----e~eDl~~~a~~~~~L~~~-G~~i~~~~i~e~~gi-p~--------- 407 (528) T protein:vir:10 343 SRDLLWPLLVLNRSGNLDARRAPRLVFDLK----DRADLAAMATSLPPLVKL-GVQVPVNWVQEQLGI-PL--------- 407 (528) T ss_pred HHHHHHHHHHhCCCCCCCccccceEEecCC----CcccHHHHHHHHHHHHhC-CCCCCHHHHHHHhCC-CC--------- Confidence 55553 343221 1111 3444332 233444456666666654 34 788888887752 11 Q ss_pred hhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccCC------ Q lcl|Aclame:pro 454 EAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEEL------ 527 (533) Q Consensus 454 ~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------ 527 (533) ++.+++.-.. ..+....+ .++..+.......+.......+.+ +-...-.......-++ T Consensus 408 -----------p~~~e~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~l 471 (528) T protein:vir:10 408 -----------PANGEAVLGD-QAGAGIAQ-LSRRPGPRIAALAQVIGPRYRDQE---ALDQVLASLPAQDMQNQADSLV 471 (528) T ss_pred -----------CCCCcccccC-CCcccccc-cCcccccccccccccccccccccc---hHHHHHHHHHHHHHHHHHHHHH Confidence 1111111000 00000000 000000000000000000000000 0000000000000000 Q ss_pred ----------CCCCCC Q lcl|Aclame:pro 528 ----------PFPEEE 533 (533) Q Consensus 528 ----------~~~~~~ 533 (533) .-++|- T Consensus 472 ~~i~~~l~~~~s~ee~ 487 (528) T protein:vir:10 472 APLLDVISRGGSEAEL 487 (528) T ss_pred HHHHHHHHhcCCHHHH Confidence 000000 No 189 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=96.97 E-value=0.00023 Score=40.50 Aligned_cols=370 Identities=11% Similarity=0.053 Sum_probs=142.5 Q ss_pred hcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCc Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGN 99 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~ 99 (533) |.=+.-|..++. ..+.. ..++... + ..+..++..++.|.+||+.|++.+=.. T Consensus 1 Mgl~d~~~~~~~----~~~~~-------------~~~~~~~-~-----~~~~~~~l~~~~v~~~i~~Ia~~ia~l----- 52 (395) T protein:vir:96 1 MGILDFFSFKKS----GTLSD-------------DDSGSTT-S-----EKLTNVVLKEDALYKCVNYLARIISKS----- 52 (395) T ss_pred CcchhhhcCCCC----ccccc-------------cccccch-h-----hhcchhhhhhHHHHHHHHHHHHhhccc----- Confidence 221111111111 11111 0001111 0 012233446789999999999874322 Q ss_pred eeeeecccccccHHHHHHHHHHhh--------hHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeec Q lcl|Aclame:pro 100 IVDVVTKDIELAKAILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNP 171 (533) Q Consensus 100 ~v~v~l~~~e~s~si~~~i~~ll~--------f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~ 171 (533) |+.|.-++.+ ......+..+|+ -....+.++..++.+|+.|..++.+. ++ ++.+... ..... T Consensus 53 p~~v~~~~~~--~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~~~---~~----~~~~~~~-~~~~~ 122 (395) T protein:vir:96 53 TFRIKAPEKL--TENQKDWLYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIPGK---GI----YVADAFT-QDKKL 122 (395) T ss_pred eeEEEeCCcc--ccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEcCC---ce----ecCCccc-ccccc Confidence 2222222111 111122344443 34456778888999999988766542 11 1121111 11111 Q ss_pred cCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHH-HHHHHHHhcc----c Q lcl|Aclame:pro 172 ETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMED-ALMLYRVVRS----V 246 (533) Q Consensus 172 ~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed-alVIyRi~RA----P 246 (533) .+.+.+.+.... ......+++.+|+|+........ .++.+.+..+.+.+.....+.. +-.+ |.... . T Consensus 123 ~~~~~~~v~~~~------~~~~~~~~~~dvih~k~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~ 194 (395) T protein:vir:96 123 SGNKFKVSRVQG------QTYEKIFTFDQVIYLKNDNSDLM-LKVESLWEEYGELLGHVINNQKIANQI-RFTMTPPKDK 194 (395) T ss_pred ccceeeeeeecc------ceeeeEeccCceEEecccCCccc-cccccccchHHHHHHHHHHHHHHHHHH-HHHhhhcccc Confidence 111111111011 11134577899999976554332 3343333333322221111110 1010 11111 1 Q ss_pred cceeeecCC-CCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC-CCC Q lcl|Aclame:pro 247 DRRVFYVDV-GNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG-SKV 324 (533) Q Consensus 247 eRr~fyidv-Gnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG-~nl 324 (533) -+...-+.+ +......+++.++......++ ..+.+ ++--+|.+-++++.=+- .++ T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v-----------------~~l~~g~~~~~l~~~~~d~q~ 251 (395) T protein:vir:96 195 VRERAQENSDGGRQPKSDKDFFKRTIEKIRT------ESVVG-----------------IPVTANTNYEEYGSKNTGSVK 251 (395) T ss_pred cccceeeccCchhhHHHHHHHHHHHHHHhhc------CCcce-----------------EEccCCceeEecccChhhhhh Confidence 111111221 122233344444444333221 11111 01112222233332111 122 Q ss_pred ChHHHH----HHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCccceeE Q lcl|Aclame:pro 325 DLAEDV----EYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFRL 399 (533) Q Consensus 325 g~i~Dv----~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~eew~~ 399 (533) -+..++ .+..+.+.+++|||...|+. + .+.+.-..+.|.++ |.-+-.++++.|.+.|+....... .+.| T Consensus 252 ~e~~~~~~~~~~~~~eIa~~fgVPp~~l~~--~---~sn~e~~~~~f~~~~L~P~~~~ie~~l~~~Ll~~~e~~~-~~~f 325 (395) T protein:vir:96 252 SYVDDIKKLKDQYMAEFAEMLGIPISLLHG--D---IADNQKNYELLLEGPIESLITNIVDGLEYAIFDKSETLE-GSFI 325 (395) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHhcC--C---CccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhcC-ceeE Confidence 122221 23346699999999999962 2 23344444556663 666667788888888765433222 2345 Q ss_pred EecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCccccc-----ccchh Q lcl|Aclame:pro 400 VMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGE-----ETTPA 474 (533) Q Consensus 400 ~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~-----~~~~~ 474 (533) +|. ++.... +.+|.+++..+- +..-||..|.- +.++..++.. +.-|+ .+.|. T Consensus 326 ~~~------~l~~~d-~~~~~~~~~~~~----------~~G~~T~NE~R-----~~~gl~pi~~-~~gD~~~~~~N~~~~ 382 (395) T protein:vir:96 326 KVT------GLKNYD-LFSISSQADKLI----------SSGFVFIDEVR-----EEIGLPELPD-GLGKVLYMTKNYESV 382 (395) T ss_pred eec------chhccC-HHHHHHHHHHHH----------hCCCcCHHHHH-----HHhCCCCCCC-CCCceeeecccceec Confidence 542 333333 345666655421 22335542221 1112212111 11222 12232 Q ss_pred hhcCccCCcccccCCCcccccCC Q lcl|Aclame:pro 475 DFLGERGSPIESPRGRTEFDFGT 497 (533) Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~ 497 (533) ...|.-. ....++ T Consensus 383 ~~~gge~----------~~~~~~ 395 (395) T protein:vir:96 383 LERGGEV----------DEEVET 395 (395) T ss_pred hhccCCC----------CCCCCC Confidence 2221111 111111 No 190 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=96.95 E-value=0.00024 Score=40.39 Aligned_cols=328 Identities=14% Similarity=0.119 Sum_probs=145.9 Q ss_pred cchhhhhhhH--HHHHHhhcccccccCcccC-CCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhH Q lcl|Aclame:pro 4 LEKYKKLNEA--VNFTNFLSPMYGMGAPHGA-GGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) Q Consensus 4 ~~~w~k~de~--~~~~~~~~~~~s~~~p~~~-~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV 80 (533) |++=+|.--+ .-++.=....|+|+.|.-. +++ .+ .+... ...++.+|..-+ +...|-+-+|.. |.. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~----~~~~~-~~~~~~~~~pp~-~~~~la~l~~a~----~~h 69 (340) T protein:vir:98 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKR-DI----LDYVE-CISNGKWYEPPV-SFSGLAKSLRSA----VHH 69 (340) T ss_pred CCCCCCCccccccccCccceeEEEcCCceeecCcc-hh----hhhhh-hhhcCceecCCC-CHHHHHHHHHhc----ccc Confidence 2211111000 0001111223444333221 111 00 01111 112233333222 344455555532 334 Q ss_pred HHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEc Q lcl|Aclame:pro 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVV 160 (533) Q Consensus 81 ~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~l 160 (533) .+||.--+|... +.+- -+..++... | ...+..+++.|+.|+.++.+. .+.+.+|..+ T Consensus 70 ~s~i~~k~n~l~-~~~~--------Pn~~lt~~~---------f----~~~~~d~ll~Gnay~~~~rn~-~G~~~~L~pl 126 (340) T protein:vir:98 70 SSPIYVKRNVLA-STYI--------PHPLLSRQD---------F----SRFALDYLVFGNAFLEQRHSV-TGQLIKLLTS 126 (340) T ss_pred chhhhhhhhHHh-hccC--------CCCCCCHHH---------H----HHHHHHHHhcCCeEEEEEECC-CCcEEEEEEe Confidence 555554444321 1111 111122221 2 345567888999999988763 4668999999 Q ss_pred CcceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEec-CcccCcccccchhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 SPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSH-KIDTNFFPYGRSYLESARAIWNQLRLMEDALML 239 (533) Q Consensus 161 dP~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~-~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVI 239 (533) +|.+|++..+ ++. ||.+.. ++....+++.+|+|+.. +..+ +-||+|-+..|++.+.. ..+.-. T Consensus 127 ~~~~vr~~~~--~~~-~~~~~~-------~~~~~~~~~~eViHir~~~~~~--~~~Gls~~~~a~~si~l----~~aa~~ 190 (340) T protein:vir:98 127 PAKYTRRGVD--DSV-FWFVEN-------FTQPHEFAPDTVFHLLEPDINQ--EIYGLPEYLSALNSAWL----NESATL 190 (340) T ss_pred CCceEEEccc--CcE-EEEEec-------CCeEEEEccccEEEEcCCCCCC--CcccccHHHHHHHHHHH----HHHHHH Confidence 9998876543 333 443432 23445688999999974 3233 34999888777766543 223333 Q ss_pred HH--Hhc--cccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcce Q lcl|Aclame:pro 240 YR--VVR--SVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVE 315 (533) Q Consensus 240 yR--i~R--APeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtE 315 (533) || ..+ |-..-|+|+.-.++ ..++.+-++.-+...+ |. .|..+ +-++. | -....|++ T Consensus 191 ~~~~~f~NGa~pg~il~~~~~~l-s~e~~~~lk~~~~~~~---------G~----~n~~~-~~vl~----~-~g~~~g~~ 250 (340) T protein:vir:98 191 FRRKYYQNGAHAGYIMYVTDPAQ-SATDVESLRDAMRNSK---------GL----GNFKN-LFFYS----P-NGKPDGIK 250 (340) T ss_pred HHHHHHhccCCCceEEEecCCCC-CHHHHHHHHHHHHHhc---------Cc----cccCc-eeEec----C-CCCccceE Confidence 33 222 22344555543344 3444444444443321 10 11100 11110 1 00112556 Q ss_pred eeecCCC--CCChHHHHHHHHHHHHHhcCCCeeeccCCCC-ccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccC Q lcl|Aclame:pro 316 IDILQGS--KVDLAEDVEYMLNRLISALKVPKAFIGYEGD-VNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKE 391 (533) Q Consensus 316 i~TLpG~--nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~-~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i 391 (533) +.-|.-. .+.=++=-++-++.+.++.+||...++.-++ .+..+.+.-...-|.+ -|.-|+.+|.++ -..|.. .+ T Consensus 251 ~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~iee~-n~~L~~-e~ 328 (340) T protein:vir:98 251 IVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFREV-NDWLGM-EV 328 (340) T ss_pred EEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc-cc Confidence 6544211 1111122345567799999999999986332 2222333333444544 456677777653 333321 12 Q ss_pred CCccceeEEecCCcHHHHHHHHH Q lcl|Aclame:pro 392 FADQDFRLVMNRSNSIVEGERFA 414 (533) Q Consensus 392 ~t~eew~~~f~~dn~f~E~ke~e 414 (533) +. |. -| +|.+.+ T Consensus 329 ~r-------F~--~~--~l~~~d 340 (340) T protein:vir:98 329 IR-------FK--EY--TLDNPE 340 (340) T ss_pred cc-------cC--cc--ccccCC Confidence 21 11 11 111111 No 191 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=96.91 E-value=0.00026 Score=40.22 Aligned_cols=402 Identities=10% Similarity=0.009 Sum_probs=168.2 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccC------cccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGA------PHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMD 74 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~------p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~ 74 (533) ||.=+.|...+ ... +.+.+...-. .+-..|-+.|...... . +.. | +| + T Consensus 19 ~~~~~~~~~~~---i~~-~i~~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~-------~-----~~~-~-------~k-i- 72 (470) T protein:vir:99 19 FPKGEKLTSNE---LLG-FIAYNETVLKPRYRENMKLYLGKHKILTAPEK-------E-----TGA-D-------NR-I- 72 (470) T ss_pred eCCCCCcCHHH---HHH-HHHHHHHhhHHHHHHHHHHhccccccccCccc-------c-----cCC-c-------ce-e- Confidence 33222221111 000 0000000000 1112222222110000 0 000 0 01 1 Q ss_pred hcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCe Q lcl|Aclame:pro 75 YTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTI 154 (533) Q Consensus 75 ~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI 154 (533) .++-+..+|+..++..+ +.|+.+...+-+-...-+..+...-+|+....+.++..++.|+.|.+...|. +|- T Consensus 73 -~~n~~~~Ivd~~~~~l~-----g~p~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~--dg~ 144 (470) T protein:vir:99 73 -VVNSAKYVVDVYNGYFC-----GIEPKLALLNDSSKIDEIARWNRQENFFDTINEISKQCDIFGRSIASIYQGE--DAR 144 (470) T ss_pred -ecchHHHHHHHHhhhhc-----cCCeeEeeCCchhHHHHHHHHHHhcCHhHHHHHHHHHHHhcCeeEEEEEeCC--CCe Confidence 12445555555555443 4456665543222222233344445799999999999999999999887753 566 Q ss_pred eeeEEcCcceeeEEeeccCcE--E-----------------EEEecccceec--ccC-Cc--------ccccCcccEEEE Q lcl|Aclame:pro 155 EKFQVVSPYIFSKRYNPETDT--W-----------------YYVITDVYRNV--VSG-YF--------NEDIPEEDVIHF 204 (533) Q Consensus 155 ~elr~ldP~~ik~v~d~~g~~--e-----------------~y~y~~~~~~~--~~~-~~--------~~~~~~~dvi~~ 204 (533) ..++.+||+.+-++++..+.+ . +.+|+....+. ... .. .+.+..=.++.| T Consensus 145 ~~i~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~ 224 (470) T protein:vir:99 145 PHLMYSSPNHAFIIYDDTVQRQPLAFVHYQIDNSNNWTDAYGVIQYADKFYKFKGYDIEEDTNAAGYAINPYGLVPAVEF 224 (470) T ss_pred EEEEEEccceeEEEEcCCCCcceEEEEEEEEEecCCeeEEEEEEEecCeEEEEEecccccccccccccccCCCccceEee Confidence 679999999999999876542 1 11222221111 000 00 011111122333 Q ss_pred ecCcccCcccccchhHHHHHHHHHHHHH-HHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccC Q lcl|Aclame:pro 205 SHKIDTNFFPYGRSYLESARAIWNQLRL-MEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNN 283 (533) Q Consensus 205 ~~~~~~d~~~~g~s~L~~Aik~~NqLrm-~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~ 283 (533) .. .+.|+|-++.++....-+-. +=+....-+..+.|.+ ++-...++....-+-+..+. .+++++ T Consensus 225 ~n------~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~~~~---~i~g~~~~~~~~g~~~~~~~---~~~~~~--- 289 (470) T protein:vir:99 225 FE------NEERQGIFDSIKTLINALDKVISQKANQVEYFDNAYM---YMIGFKLPEDDEGNPKFDFK---NNRVLY--- 289 (470) T ss_pred cC------CCCCCcchHhHHHHHHHHHHHHHHHHHHHHHhcCcee---eeecCCcccccccchhhhhh---hcceee--- Confidence 22 23566666554443333321 1222222333333332 33333333211111111110 011111 Q ss_pred CCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC-CCChHH-HHHHHHHHHHHhcCCCeeeccCCCCccchhhhh Q lcl|Aclame:pro 284 QNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDLAE-DVEYMLNRLISALKVPKAFIGYEGDVNAKNTLA 361 (533) Q Consensus 284 tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~i~-Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~ 361 (533) +|-.+++.+-.+.+|... +..... -++-+.+.+|...++|-.-.+. ..|+.|..+ T Consensus 290 ---------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~--~~~n~Sg~A 346 (470) T protein:vir:99 290 ---------------------VSQLDPDTNPQIGFIAKPDADQMQENLIQHLTDFIFMMAMVPNIQDKN--FAGNSSGVA 346 (470) T ss_pred ---------------------ecCCCCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCCccccccc--cccCchHHH Confidence 222223334456666432 544443 3788999999999999533221 113333333 Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhhh--hhhc----cCCCcc---ceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 362 --TQDIKFNNTIKRIQGFFVEELERM--VRMN----KEFADQ---DFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWV 430 (533) Q Consensus 362 --rde~kF~kfI~rLr~~F~~~l~~q--Lilk----~i~t~e---ew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyv 430 (533) ..+.....-+.+.++.|...|++- |+++ +..... +.++.|...-.-.+...+ +++..+..-+ T Consensus 347 i~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~~~~p~~~~e~a-------~~~~kl~gii 419 (470) T protein:vir:99 347 LQYKLFAMKNKADSKERKFDKSLMQLYRIVLATLFNNKQDQELWSELDFKFTRNLPEDMASAI-------DNAKNAEGIV 419 (470) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccceEEeCCCCCcCHHHHH-------HHHHHHhccC Confidence 233334445666667777766653 2321 112222 336888654443333333 3444445678 Q ss_pred hHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccC Q lcl|Aclame:pro 431 REDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELN 508 (533) Q Consensus 431 gk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (533) +++++...+-....+ ++-+.|++|........ .....+. +....+ |. + +-+ T Consensus 420 s~et~l~~l~~vd~~--~E~eri~~E~~~~~~~~---~~~~~~~--d~~~~d----~~-~---------------ee~ 470 (470) T protein:vir:99 420 SKKTQLGMIPDIEPD--AEMKQIAKEKADAIKQT---QQLSMPI--DILKRD----NN-A---------------EEE 470 (470) T ss_pred CHHHHHHhCCCCCHH--HHHHHHHHHHHHHHHHH---HhhcCCC--CcCCCC----CC-c---------------cCC Confidence 889888876554322 22233444432111000 0000000 000000 00 0 000 No 192 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=96.88 E-value=0.00028 Score=40.08 Aligned_cols=375 Identities=13% Similarity=0.071 Sum_probs=188.3 Q ss_pred cccccCcccCCCCcccCCCCCccccchhhcccccCccc------cchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCC Q lcl|Aclame:pro 23 MYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIE------FNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNE 96 (533) Q Consensus 23 ~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~------~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~ 96 (533) |...+.-.-- ..+. ..- ...-.-..||-|.. .+..+-++...++. -+-+.-+|+.+++-+.+-++ T Consensus 1 m~~~~i~~L~---~~~~---~~~-~r~~~~~~yy~g~~~~~~~~~~~p~~~~~~~~~v--~nw~~~~Vd~~a~rl~~~Gf 71 (422) T protein:vir:97 1 MNYMGMGYLR---RKLA---LFK-TGVDKRYRYYAMDDRDDTRSIVMPNNVREMYRSV--LEWTAKGVDSLADRIIFREF 71 (422) T ss_pred CChHHHHHHH---HHHH---HHH-HHHHHHHHHHhcCCChhhcCccccHHHHHHHHhh--cchhHHHHHHHHhcccccee Confidence 1110000000 0000 000 00000122333321 01111122222222 13556677777654443332 Q ss_pred CCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCcEE Q lcl|Aclame:pro 97 NGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDTW 176 (533) Q Consensus 97 ~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~e 176 (533) ...+- -...+...=+|+.+..+.++.-|++|+.|.-..-+.. +|...++.++|+++..++|..+++. T Consensus 72 -------~~~d~-----~l~~~w~~N~ld~~~~~~~~~al~~G~sf~~v~~~~~-~~~p~i~~~sp~~~~~i~D~~~~~~ 138 (422) T protein:vir:97 72 -------TNDDF-----NAWEIFKANNPDIFFDTAIQSALIASCCFVYIMPGAE-DGLPKMQVIEASKATGILDPTTFLL 138 (422) T ss_pred -------eCCch-----hHHHHHHhcChHHHHHHHHHHHHHhcceeEEEeeCCC-CCeeEEEEechhhEEEEEeCCCCcc Confidence 12221 1233444457888999999999999999988765543 4656789999999999998876642 Q ss_pred EEEe-----------------ccccee-cccCCc----ccccCcccEEEEecCcccCcccccchhH-HHHHHHHHHH-HH Q lcl|Aclame:pro 177 YYVI-----------------TDVYRN-VVSGYF----NEDIPEEDVIHFSHKIDTNFFPYGRSYL-ESARAIWNQL-RL 232 (533) Q Consensus 177 ~y~y-----------------~~~~~~-~~~~~~----~~~~~~~dvi~~~~~~~~d~~~~g~s~L-~~Aik~~NqL-rm 232 (533) ...+ +..... -...+. .+....=-+++|.+.- +-..++|.|-+ +..+...+-+ |. T Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~-~~~~~~G~s~I~e~v~~l~da~~r~ 217 (422) T protein:vir:97 139 TEGYAILESDSNGNPTLEAYFTDKDIWYYPKKGKPYNIKNPTGHPLLVPIIHRP-DAVRPFGRSRITKAGMYHQKAAKRT 217 (422) T ss_pred eeeEEEEEecCCCcEEEEEEEcCceEEEEcCCCccccccCCCCCcceEEecccC-CCccccCccccchhHHHHHHHHHHH Confidence 2111 111110 000111 1111112456666432 11235777755 3333333332 45 Q ss_pred HHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCC Q lcl|Aclame:pro 233 MEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRR 312 (533) Q Consensus 233 ~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~ 312 (533) +-+.++.-...=.|.|-++=+|--..|..+-. ..|-.=..+|.-+.+- T Consensus 218 ~~~~~~~~e~~a~pqr~i~G~d~d~~~~~~~~--------------------------------~~~~~i~~~~~de~~~ 265 (422) T protein:vir:97 218 LERAEVTAEFYSFPQKYVLGMDPDAKPMEKWR--------------------------------ATVSTLLEISKDEDGD 265 (422) T ss_pred HHHHHHHHHHhcchhhhhcccCcccccCchhh--------------------------------hhhhhhhccCCCCCCC Confidence 66677777776666665554432111111100 1111224467667777 Q ss_pred cceeeecCCCCCChH-HHHHHHHHHHHHhcCCCeeeccCCCCc-cchhhhhHHHHHHHHHHHHHHHHHHHHHhhh----h Q lcl|Aclame:pro 313 AVEIDILQGSKVDLA-EDVEYMLNRLISALKVPKAFIGYEGDV-NAKNTLATQDIKFNNTIKRIQGFFVEELERM----V 386 (533) Q Consensus 313 gtEi~TLpG~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~~-gr~~eI~rde~kF~kfI~rLr~~F~~~l~~q----L 386 (533) +.+|..+++++|+-. +-++-.-..+...-++|..-|+....- .-+..|.-.+....+-+.+-|+.|..-|+.- + T Consensus 266 ~~~v~q~~~~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~ 345 (422) T protein:vir:97 266 KPTVGQFTTASMAPFMEHLKMYASLFAGGSGLTLDDLGFPSDNPSSVESIKAAHENLRAAGRKAQRSFSSGFLNVAYIAV 345 (422) T ss_pred cceeeecCCCChhHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 788999998877633 446666677777789999999865541 1234566677788889999999998765543 3 Q ss_pred hhccCCC--ccce---eEEecCCcHHHHHHHHHHHHHHHH----HHHHhhhhhhHHHHHHHHhcCCh--hhhHHHHHHhh Q lcl|Aclame:pro 387 RMNKEFA--DQDF---RLVMNRSNSIVEGERFAVIEQRIG----IAERLKGWVREDWIYSNILQIPY--DLKPQEEVAEA 455 (533) Q Consensus 387 ilk~i~t--~eew---~~~f~~dn~f~E~ke~ei~~~R~~----~~~~~~pyvgk~~i~k~il~~td--e~~~q~~~i~~ 455 (533) -+.+... +++| .+.|. +++-. +.-.+.+..+ +++....+.++..+++.. .+++ +++..-++.+. T Consensus 346 ~~~~~~~~~~~~~~~~~~~w~-p~~~~---~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~l-g~~~~~~~~~~~~~~~~ 420 (422) T protein:vir:97 346 CLRDEFPYLRNQFMDTVIKWE-PLFEA---DANMLTLVGDGAIKLNQAIPGFMDADVIRDLT-GVKGADKPIPAITEVTT 420 (422) T ss_pred HHhcCCcccchhhccceEEEc-cCCCC---ChHHHHHHHHHHHHHHhhccccccHHHHHHHc-CCCchhHHHHHHHhhhc Confidence 2333222 3455 35554 22211 1223334444 444445688888777664 5564 23333333333 Q ss_pred hc Q lcl|Aclame:pro 456 AG 457 (533) Q Consensus 456 E~ 457 (533) ++ T Consensus 421 d~ 422 (422) T protein:vir:97 421 DG 422 (422) T ss_pred cC Confidence 33 No 193 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=96.86 E-value=0.00029 Score=39.94 Aligned_cols=414 Identities=11% Similarity=0.041 Sum_probs=159.5 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCcccc--chH-HH---HHHH-H-- Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEF--NRF-FL---YDMY-D-- 71 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~--n~~-~l---i~~Y-R-- 71 (533) ||+=|+...+ +-+.+-... ......-. ..|...... ....-....+|-|... ++. .. .... + T Consensus 7 ~~~~~~~~~~----~~~~~~~~~-~~~~~~i~---~~i~~~~~~-~~~~~~~~~Yy~g~~~i~~r~~~~~~~~~~~~~~~ 77 (474) T protein:vir:95 7 MPWDKPYGEE----VVEQLKPQF-ETQEEMII---RLIDDHRKQ-LDKITVGQRYYDKDNDIVKQMKKVDVYGNIDYDKP 77 (474) T ss_pred cCCCCchhhH----HHHhhhhcc-CChHHHHH---HHHHHHHHH-HHHHHHHHHHhcccCchhccccccccccccccccc Confidence 4443333211 111110000 00000000 000000000 0000001112222100 000 00 0000 0 Q ss_pred --HHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecC Q lcl|Aclame:pro 72 --RMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKG 149 (533) Q Consensus 72 --~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~ 149 (533) ++ .++-..-+++..+...+ +.|+.+..++-+..+.+ ..+.. -+|+.++.+.++.+++.|+.|.+..+|. T Consensus 78 ~~ki--~~n~~~~Ivd~~~~~l~-----g~p~~~~~~d~~~~~~l-~~~~~-n~~~~~~~e~~~~~~~~G~~~~~v~~d~ 148 (474) T protein:vir:95 78 DWRI--TTNFHQNLVDQKVSYVA-----SKPVTYSCEDESVLKII-HDVLD-TRWDNKLIDILTATSNKGIDWLQVYINE 148 (474) T ss_pred ccee--ccchHHHHHHHHHhhhc-----cCCceeccCchHHHHHH-HHHHh-ccHHHHHHHHHHHHhhcCcEEEEEEecC Confidence 01 13344445555554433 46667766653332222 22222 3689999999999999999999877753 Q ss_pred CCCCeeeeEEcCcceeeEEeecc--CcEEEEE-------------eccc--ceecccCCc-----------------ccc Q lcl|Aclame:pro 150 SDGTIEKFQVVSPYIFSKRYNPE--TDTWYYV-------------ITDV--YRNVVSGYF-----------------NED 195 (533) Q Consensus 150 ~k~gI~elr~ldP~~ik~v~d~~--g~~e~y~-------------y~~~--~~~~~~~~~-----------------~~~ 195 (533) +|-..+..++|+++-++++.. ++..+++ |+.. +.+....+. .+. T Consensus 149 --~~~~~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (474) T protein:vir:95 149 --NGEMKLFRVPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHIQSHFSNGN 226 (474) T ss_pred --CCceEEEEEcccceEEEEcCCCCCceEEEEEEEEEcCeeEEEEEeCCeEEEEEEcCCccccccccCcccccccccccC Confidence 455579999999999998754 2211111 1111 011100000 000 Q ss_pred cCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHh Q lcl|Aclame:pro 196 IPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLME-DALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQY 274 (533) Q Consensus 196 ~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~E-dalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~ 274 (533) +..=.+++|.. .+.|.|-|+.++.....|-.+= +....-+-.+.|-+-+.-.+..+.. .. ..-+.. T Consensus 227 ~g~iPvv~~~n------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~-----~~-~~~~~~- 293 (474) T protein:vir:95 227 WGRVPFIAFKN------NPEEVSDIWMYKSLIDAIDKRLSDAQNMFDESVELIYILKGYEGQDLE-----EF-MRGLKY- 293 (474) T ss_pred CCccceEeecC------CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccch-----hh-hhhhhc- Confidence 11111233221 2467777777665555544322 2222334444443322212111100 00 000000 Q ss_pred hhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChH-HHHHHHHHHHHHhcCCCeeeccCCCC Q lcl|Aclame:pro 275 KRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLA-EDVEYMLNRLISALKVPKAFIGYEGD 353 (533) Q Consensus 275 knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~ 353 (533) +. + +++ +++.+.+.-|.+ .+++.. .-++-+.+.+|...++|- +..+.. T Consensus 294 ----------~~------------~---i~~---~~~~~~~~l~~~-~~~~~~~~~~~~l~~~i~~~s~~p~--~~~~~~ 342 (474) T protein:vir:95 294 ----------YK------------A---INV---DGDGGVETIQVE-VPVSSTKEYIDLMRAYIMEFGQGVD--FQTDKF 342 (474) T ss_pred ----------cc------------e---eec---cCCCceeEEeec-CCHHHHHHHHHHHHHHHHHHhCCcc--cccccc Confidence 00 0 111 122222332322 244333 337788899999999994 222221 Q ss_pred ccchhhhhH--HHHHHHHHHHHHHHHHHHHHhhh--hhhc--c-CCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 354 VNAKNTLAT--QDIKFNNTIKRIQGFFVEELERM--VRMN--K-EFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERL 426 (533) Q Consensus 354 ~gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~q--Lilk--~-i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~ 426 (533) .|..+..+. .......-+.+.++.|...|+.- ||++ | .....+..++|....--.+...+ +++.++ T Consensus 343 ~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~~d~~~i~v~f~~~~p~d~~e~a-------~~~~~~ 415 (474) T protein:vir:95 343 GSAPSGIALKFLYGNLDLKANKLKNKATVAIQELIGFIIDFNNLKMDVKDIEISFNFNRMMNDAEQS-------QIIAQS 415 (474) T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCCCcCHHHHH-------HHHHhc Confidence 233233222 22222334555555666555443 2332 2 22223445677544333233222 334443 Q ss_pred hhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCc Q lcl|Aclame:pro 427 KGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGE 506 (533) Q Consensus 427 ~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (533) +.+++.++.+.+-..+| -.++-+.|++|..+.....+.. .+...++ ..... + T Consensus 416 -g~iS~et~i~~l~~v~d-~~~E~~ri~~E~~~~~~~~~~~---------~~~~~d~--~~~~~---~------------ 467 (474) T protein:vir:95 416 -QYLSRETLVKSSPLVDD-YKAELERIEQEQMEYNKQLPNL---------DDGGADG--AQQQE---R------------ 467 (474) T ss_pred -CCCchHHHHHhCCCCCC-HHHHHHHHHHHHHHHHhccccc---------ccccCCC--CcCCC---C------------ Confidence 67899888876544444 2234445555543221111000 0000111 00000 0 Q ss_pred cCcCcccCCch Q lcl|Aclame:pro 507 LNLGGAFEEFE 517 (533) Q Consensus 507 ~~~~~~~~~~~ 517 (533) ...++++ T Consensus 468 ----~~~~~~~ 474 (474) T protein:vir:95 468 ----SNDKESE 474 (474) T ss_pred ----CccCCCC Confidence 0000100 No 194 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=96.83 E-value=0.00031 Score=39.83 Aligned_cols=416 Identities=11% Similarity=0.055 Sum_probs=180.3 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCC----CCccc---cchhhcccccCccccchHHHHHHHHHHhhc Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPIN----MYHPF---ATAGYASRFYGGIEFNRFFLYDMYDRMDYT 76 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~----~~~~~---~~~~~~~~~ygg~~~n~~~li~~YR~m~~~ 76 (533) |--|....+.. ++=+.|= |...++ .-++.. .++.. ...++ +.+.+ ....... .=|.+ . T Consensus 1 ~~~~~~~~~~i-----~~w~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~w~-~~~~~~~---~~~~~--~ 65 (518) T protein:vir:78 1 MGVWSVMTRFI-----KGWLNGK--PNGSEP-ELIPKYLPLVPDNQKEWSKDSYL-TSLWA-QGYVPTV---HDKLM--N 65 (518) T ss_pred CcchhhHHHHH-----HHhhcCC--CCccch-hccHHHhhhcccchhhhhhhhhh-hhhcc-cCCCCcc---ccccc--c Confidence 33333222221 1111111 111111 011100 00000 00000 00000 0000000 00112 1 Q ss_pred ChhHHHHHHHhhceeeecCCCCceeeeecc-----cccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCC Q lcl|Aclame:pro 77 DPLISTVLDIIADECTIPNENGNIVDVVTK-----DIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSD 151 (533) Q Consensus 77 ~PEV~~AId~Ivneaiv~d~~~~~v~v~l~-----~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k 151 (533) .|--..+++++++-++ +. +++|..+ +.+..++..+.+++-.+|...+.+.+..+..-|.++|+..+++. T Consensus 66 ~~l~~~i~~~~A~ll~----~e-~~~i~v~~~~~~d~e~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~- 139 (518) T protein:vir:78 66 SGTGNEIVVVAAEYIS----GK-PLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNG- 139 (518) T ss_pred CChHHHHHHHHHHhhc----CC-CceEEecCccccCcHHHHHHHHHHHHhccHHHHHHHHHHHhhccCceEEEEEEECC- Confidence 2344556667776543 22 2233332 22333334444444457999999999999999999999988742 Q ss_pred CCeeeeEEcCcceeeEEeeccCc---------------EEEEE----------------ecccce------eccc---CC Q lcl|Aclame:pro 152 GTIEKFQVVSPYIFSKRYNPETD---------------TWYYV----------------ITDVYR------NVVS---GY 191 (533) Q Consensus 152 ~gI~elr~ldP~~ik~v~d~~g~---------------~e~y~----------------y~~~~~------~~~~---~~ 191 (533) .| .+.+++|.++-+.+. .|+ ..+|. |+.+.. ...+ +. T Consensus 140 -~~-~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~ 216 (518) T protein:vir:78 140 -RP-SISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPI 216 (518) T ss_pred -ee-EEEEEcCCeeEEEee-cCcEEEEEEEEEeecCCcceeEEEEEeeccccccceeecccceeEEEEEeeecCcccccc Confidence 24 688899988876542 121 11221 011110 0000 00 Q ss_pred c----ccc---------cC---------cccEEEEec----CcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 192 F----NED---------IP---------EEDVIHFSH----KIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRS 245 (533) Q Consensus 192 ~----~~~---------~~---------~~dvi~~~~----~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RA 245 (533) + ... .. +.-.+.|-. +..+...|+|+|-|++|......|-..-+ -+.|..|. T Consensus 217 ~~~~~~~~l~~~~~~~~~~e~~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s--~~~~e~~~ 294 (518) T protein:vir:78 217 SAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFT--VYMREGEK 294 (518) T ss_pred cccccccccccccccccCccceeeccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHH--HHHHHHHh Confidence 0 000 00 011222222 22222247899999998887777766655 34566666 Q ss_pred ccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccc----cCCCc-ceeeecC Q lcl|Aclame:pro 246 VDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRR----GDRRA-VEIDILQ 320 (533) Q Consensus 246 PeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR----~g~~g-tEi~TLp 320 (533) =.+|+|..+. ++.+ ..+..++.- .. ..---.++|.+.. +|+.+ ..|+++. T Consensus 295 g~~~i~v~~~--------------~l~~-----~~~~~~~~~---~~---~fd~~~~~y~~i~~~~~~~~~~~~~i~~~~ 349 (518) T protein:vir:78 295 TKTKIAASER--------------MFRK-----KVNKSTDKE---EW---SMNVDEDYFMQFKGTLDAGAKLNDMIQFMQ 349 (518) T ss_pred CCceeeechh--------------Hhcc-----CCCCCCCcc---cc---ccCCCCceEEEecCcCCCCCccccceeeee Confidence 5666665321 0000 000000000 00 0000011222111 12222 2355553 Q ss_pred CC-CCCh-HHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhh--h---hcc--- Q lcl|Aclame:pro 321 GS-KVDL-AEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMV--R---MNK--- 390 (533) Q Consensus 321 G~-nlg~-i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qL--i---lk~--- 390 (533) -. .-.+ ..-+..+.+.+..+.|++.+-|+.+++.--+++|....-+-...+.+.|+.+...|+.-+ + ++. T Consensus 350 ~~Ir~e~~~~~~~~~l~~~~~~~G~s~~tfg~~~~~~TATei~s~~~~~~~t~~~~~~~~e~al~~l~~~i~~l~~~~~~ 429 (518) T protein:vir:78 350 GDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTN 429 (518) T ss_pred cccChHHHHHHHHHHHHHHHHhhCCChhhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC Confidence 22 1122 233788899999999999998876433223567766665666677777777665554321 1 111 Q ss_pred ----CCCcc--ceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHhcCChhhhHH-HHHHhhhcccCCC Q lcl|Aclame:pro 391 ----EFADQ--DFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDW-IYSNILQIPYDLKPQ-EEVAEAAGGGGLF 462 (533) Q Consensus 391 ----i~t~e--ew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~-i~k~il~~tde~~~q-~~~i~~E~~~~~~ 462 (533) ....+ +..++|...-.-.+..+++++. ++.+ -..+|++. |++.....+||+.++ -+.|++|...... T Consensus 430 ~~~~~~~~~~~~v~i~f~D~i~~D~~~~~~~~~---~~v~--aGimS~e~~i~~~~~~~~deea~~e~~ri~~E~~~~~~ 504 (518) T protein:vir:78 430 NKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLN---NMNS--ALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEV 504 (518) T ss_pred ccccccCCCceeEEEEeCCCCCCCHHHHHHHHH---HHHh--cCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCC Confidence 11223 3445555322222223333222 1221 24677765 443334678877654 4678888665444 Q ss_pred CCcc-cccccchhhhcCccCCcccccCCCcccccCCCCCccCCC Q lcl|Aclame:pro 463 DTGG-FGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGG 505 (533) Q Consensus 463 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (533) ++++ .++. ++.+ | T Consensus 505 ~~p~~~~g~--------------~~~~----------------g 518 (518) T protein:vir:78 505 PDPEAIGGM--------------ETKG----------------G 518 (518) T ss_pred CCCccccCC--------------CCCC----------------C Confidence 3332 1111 1111 1 No 195 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=96.82 E-value=0.00032 Score=39.78 Aligned_cols=434 Identities=11% Similarity=0.067 Sum_probs=170.5 Q ss_pred hcccccccCcccCCCCcccCCCCCccccchhhcccccCcc-ccc-h-----HHHHHHHHHHhhcChhHHHHHHHhhceee Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGI-EFN-R-----FFLYDMYDRMDYTDPLISTVLDIIADECT 92 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~-~~n-~-----~~li~~YR~m~~~~PEV~~AId~Ivneai 92 (533) |+.... ...|-.+.- +-.- ...+...|+|. ..+ . .+.++-|+.|. .|++|.++++.+..-+. T Consensus 1 ~~~~~~-----~~~gl~p~r--l~~i---~~~~~~~~~~~~~~~~~~~Lr~~~~~~ly~~m~-~D~hi~s~l~~Rk~av~ 69 (488) T protein:vir:95 1 MADITE-----TQESLPPFR--MGEV---GSLGLKVKNGRIYEEPRQALRFPESIKTFQLMM-RDPAVAASVNIIKMFVR 69 (488) T ss_pred CCCccc-----cCCCCCHHH--HHHH---HHHhhccccchhhccchhhhcccchHHHHHHHh-hChHHHHHHHHHHHHHh Confidence 211111 111211110 0000 00111112222 222 1 23578999997 49999999999987765 Q ss_pred ecCCCCceeeeeccc---ccccHHHHHHHHHHh--hhHHHHHHHHHHHhhcCceeEEEeecCC-----------CCC--- Q lcl|Aclame:pro 93 IPNENGNIVDVVTKD---IELAKAILSYLDYVI--NIEKNAYPIIRNMIKYGDMFLHILEKGS-----------DGT--- 153 (533) Q Consensus 93 v~d~~~~~v~v~l~~---~e~s~si~~~i~~ll--~f~~~~~e~~R~wyvDGr~~~~kiid~~-----------k~g--- 153 (533) ..+-.-.|-.-.-++ .+..+. ++..++-+ .|...+.+.. ..+-.|-.++.++.+.. .+| T Consensus 70 ~~~w~v~p~~~~~~d~~~~~~a~~-v~~~l~~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~~~~~~~~~~~~dg~~~ 147 (488) T protein:vir:95 70 KVNWRFVPPKGKEQDPKMLERADF-FNSLMDDMEHDWADFINSVM-SFCTYGFCVNEKVYKKRQGKKGKYQSKFDDGLIG 147 (488) T ss_pred cCCceEecCCCCchhHHHHHHHHH-HHHHHhccCccHHHHHHHHH-HhhcccceeeeeeeeccccccccccccccCCeee Confidence 443322111000000 011111 11222222 2445555554 35677888888877532 123 Q ss_pred eeeeEEcCccee-eEEeeccCcEEEEE--------ecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHH Q lcl|Aclame:pro 154 IEKFQVVSPYIF-SKRYNPETDTWYYV--------ITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESAR 224 (533) Q Consensus 154 I~elr~ldP~~i-k~v~d~~g~~e~y~--------y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Ai 224 (533) +.++..-+|.++ ++.++..+...... +.......+.......+++...+++.|+--.+. ++|.|.|.+|. T Consensus 148 ~~~i~~Rpq~~~~~f~~d~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~kfi~~~~~~~~g~-p~g~gLlr~~~ 226 (488) T protein:vir:95 148 WAKLPIRNQSTLDKWYFDEDFRRVTGVRQNLRNVSHIAGAINLGERPLTRKLPRAKFMLFKYDDEYGN-PEGRSPLLNAY 226 (488) T ss_pred eeeeeecCcccccceeeccCCCceeecccccccccccccccccccccccccccccceEEEeecCCCCc-cchhhHHHHHH Confidence 223333333333 22334333211110 000001112223456788999999999877665 79999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhc-cccceeeecCCCCC------chhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhh Q lcl|Aclame:pro 225 AIWNQLRLMEDALMLYRVVR-SVDRRVFYVDVGNV------PPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIE 297 (533) Q Consensus 225 k~~NqLrm~EdalVIyRi~R-APeRr~fyidvGnl------p~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~ 297 (533) -+|-.-+......+.+=--- .|-.-.. ...+.. -+.+..+.++.+...+ .-+...|-|. .. T Consensus 227 w~~~fK~~~~~~w~~f~Er~g~g~p~~~-~p~~~~~~~~~~e~~~l~~a~~~i~~~~----~~~~~ag~ii--P~----- 294 (488) T protein:vir:95 227 VPWKYKVQIEEYEAVGVSRDLVGMPKIG-LPPDYLDENAEPEKKAFVQYCKTVVNDM----IANDRAGLIW--PR----- 294 (488) T ss_pred HHHHHHHHHHHHHHHHHHHhcccceeEe-eccCCCCCcccHHHHHHHHHHHHHHHHh----hccchhheee--cc----- Confidence 99987777766555542100 1222222 221211 1112223333333322 2222233221 00 Q ss_pred hHHhhhhcccccCCCcceeeecCC--CCC-ChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 298 SILKDYFIPRRGDRRAVEIDILQG--SKV-DLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRI 374 (533) Q Consensus 298 smleDywlprR~g~~gtEi~TLpG--~nl-g~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kfI~rL 374 (533) .|--|+ ..-..|+..+.. +.. .-..-++|..+++-+++--..--++.+.+.+++..-+-.+ -|...++.. T Consensus 295 g~~~~~------k~~~~e~~l~~~~~~~~~~~~~li~~~d~~Isk~iLGqtLT~~~~~~Gs~Al~~vh~e-v~~~i~~aD 367 (488) T protein:vir:95 295 YIDPDT------KEDIFEFSLVSRQGAKAYDTGSIIDRYSKQIMMAFMSDVLAMGQSKYGSFSLADSKTS-LLAMSVDIL 367 (488) T ss_pred cccccc------chhhhhhhccccccCCchhHHHHHHHHHHHHHHHHhccccccccCcchhhhHHHHHHH-HHHHHHHHH Confidence 010000 000123333432 222 2223489999999888754432222222233332222223 245556666 Q ss_pred HHHHHHHHhhhhh-----hccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhh----HHHHHHHHhcCChh Q lcl|Aclame:pro 375 QGFFVEELERMVR-----MNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVR----EDWIYSNILQIPYD 445 (533) Q Consensus 375 r~~F~~~l~~qLi-----lk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvg----k~~i~k~il~~tde 445 (533) .+.+.+.|.+||| ++..-...-=+|.|-. .|-.+...+.+++..|..+--.+. ++||++.+. +. T Consensus 368 a~~i~~tln~~li~~l~~~Nfg~~~~~P~~~~~~----~e~~Dl~~~ae~~~~L~~~G~~i~~~~~~~~i~e~~g-ip-- 440 (488) T protein:vir:95 368 LKQIKNVINRDLVAQTYALNMWDDEEHVQITYDD----IETPDLEAIGSYIQKTVAVGALEVDKELSNKLREHIG-LP-- 440 (488) T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEecC----cChhhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhC-CC-- Confidence 6666666666655 3321111111233321 122344455566666655422222 455554332 11 Q ss_pred hhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCccc Q lcl|Aclame:pro 446 LKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEE 525 (533) Q Consensus 446 ~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 525 (533) .++.+++... . ..|........+. ...|.. .-...+ + +.+.-+++ T Consensus 441 ------------------~~~~~e~~~~-----~-----~~~~~~~~~~~~~---~~~~~~-~~~~~~-~--~~~~~a~~ 485 (488) T protein:vir:95 441 ------------------PADESQPVSE-----K-----LSPNSQSRSGDGY---KTAGEG-TAKTPS-A--KDPSTANK 485 (488) T ss_pred ------------------CCCCCccccc-----c-----CCCCCCCCCCccc---CCCccc-CCcccc-c--ccchhhhh Confidence 1111111100 0 0010000000011 001110 000000 0 00111111 Q ss_pred CCC Q lcl|Aclame:pro 526 ELP 528 (533) Q Consensus 526 ~~~ 528 (533) +-. T Consensus 486 ~~~ 488 (488) T protein:vir:95 486 ANK 488 (488) T ss_pred ccC Confidence 111 No 196 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=96.80 E-value=0.00033 Score=39.65 Aligned_cols=385 Identities=13% Similarity=0.104 Sum_probs=167.0 Q ss_pred ccCcccCCCCcccCCCCCcc-ccchhhcccccCccc--cchHHHHHHH---HHHhhcChhHHHHHHHhhceeeecCCCCc Q lcl|Aclame:pro 26 MGAPHGAGGSSMIPINMYHP-FATAGYASRFYGGIE--FNRFFLYDMY---DRMDYTDPLISTVLDIIADECTIPNENGN 99 (533) Q Consensus 26 ~~~p~~~~gas~i~~~~~~~-~~~~~~~~~~ygg~~--~n~~~li~~Y---R~m~~~~PEV~~AId~Ivneaiv~d~~~~ 99 (533) ++...-.+ .|.. ... .....-...||-|.. -++.. ...+ .++ .++-+.-+|+..+...+ +. T Consensus 1 l~~~~l~~---~i~~--~~~~~~r~~~l~~yy~g~~~il~~~~-~~~~~~~~ki--~~n~~~~ivd~~~~~l~-----g~ 67 (429) T protein:vir:98 1 MTKDLLSE---LIQK--HRSFNLSYSAYKQLYEGDHAILQQKQ-KEQYKPDNRL--VVNFAKYIVDTFNGYFI-----GV 67 (429) T ss_pred CCHHHHHH---HHHH--HHHHHHHHHHHHHHhccccccccccc-cccCCCccee--ecchHHHHHHHHhhhhc-----cc Confidence 10000000 0000 000 000000011111110 00000 0000 011 12344444554444333 35 Q ss_pred eeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCcE--EE Q lcl|Aclame:pro 100 IVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDT--WY 177 (533) Q Consensus 100 ~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~~--e~ 177 (533) |+.+..++ +-.++.++.+.+-.+|+.+..+.++.+++.|+.|.....| ++|...++.++|+.+.++++..++. .+ T Consensus 68 ~~~~~~~~-~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d--~~g~~~~~~~~p~~~~~v~dd~~~~~~~~ 144 (429) T protein:vir:98 68 PVQTSHEN-KQVSNYLELLDGYNDQDDNNAELSKICSIYGHGYELVFND--ENAEAGITYLTPLEAFIVYDDSIRQKPLF 144 (429) T ss_pred CceeecCC-hHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEec--CCCcEEEEEEcccceEEEEeCCCCCceEE Confidence 56666554 3334445555556689999999999999999999987775 3577789999999999998765541 11 Q ss_pred EE--------------ecc--cceecccCCc-------ccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 178 YV--------------ITD--VYRNVVSGYF-------NEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLME 234 (533) Q Consensus 178 y~--------------y~~--~~~~~~~~~~-------~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~E 234 (533) ++ |+. ...+...... .+.+..=.+++|.- ...|.|-++.++.....|-.+= T Consensus 145 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n------~~~g~sd~e~v~~liD~~d~~~ 218 (429) T protein:vir:98 145 AVRYFYNKGGVLEGSYSDASNITYFKDGEKGIEIGESEPHPFDGVPMIEYVE------NEERQSLLASVVTLINAFNKAI 218 (429) T ss_pred EEEEEEecCceEEEEEEeCceEEEEEecCCceEecccccccCCccceEEecC------CCCCCCcHHHHHHHHHHHHHHH Confidence 11 111 1111111000 01111112333321 2367777777665555544322 Q ss_pred H-HHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCc Q lcl|Aclame:pro 235 D-ALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRA 313 (533) Q Consensus 235 d-alVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~g 313 (533) - ....-+-.+.|-+-+ -...+.. +.++.++. ++++ .+|- +||++ T Consensus 219 s~~~~~~~~~~~p~~~i---~g~~~~~----~~~~~~~~---~~~~------------------------~~~~-~~~~~ 263 (429) T protein:vir:98 219 SEKANDVEYFADAYLKI---LGAELDD----ETLKSLRD---TRII------------------------NLKD-TDAQQ 263 (429) T ss_pred HHHHHHHHHhcCceeee---ecCCCCc----chhhhHhh---Ccee------------------------eccC-CCCCC Confidence 2 222234444444333 2222221 11111110 0111 1111 22333 Q ss_pred ceeeecC-CCCCChHH-HHHHHHHHHHHhcCCCeeeccCCCCccchhhhhH--HHHHHHHHHHHHHHHHHHHHhhh--hh Q lcl|Aclame:pro 314 VEIDILQ-GSKVDLAE-DVEYMLNRLISALKVPKAFIGYEGDVNAKNTLAT--QDIKFNNTIKRIQGFFVEELERM--VR 387 (533) Q Consensus 314 tEi~TLp-G~nlg~i~-Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~q--Li 387 (533) ..++.|- ..+.+... -++-+.+.+++...+|- +. ..++|..|..+. .+.....-+.+.|+.|...|+.- |+ T Consensus 264 ~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~--~~-~~~~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li 340 (429) T protein:vir:98 264 LTVEFLQKPDADATQEHLLDRLENLIFRTAMVAN--IS-DESFGTASGIALRYRLQAMDNLAKTKERKFMSGMNRRYKLI 340 (429) T ss_pred cceeEEeecCCHHHHHHHHHHHHHHHHHHhCccc--cC-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3444442 12443333 37888999999999994 33 234555444444 22333445666666677655533 22 Q ss_pred h---ccCCCccc---eeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCC Q lcl|Aclame:pro 388 M---NKEFADQD---FRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGL 461 (533) Q Consensus 388 l---k~i~t~ee---w~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~ 461 (533) + +......+ ..+.|.....-.+.. .+++++++.+.++++++++.+-..+|. .++-+.|++|..+.. T Consensus 341 ~~~~~~~~~~~d~~~i~v~f~~~~p~~~~~-------~a~~~~kl~g~is~et~~~~l~~v~d~-~~E~~ri~~E~~~~~ 412 (429) T protein:vir:98 341 ASYPTSKIGPKDWIGIKYKFTRNLPANLLE-------ESQIAGNLAGIVSEETQVGVLSIVENP-QKEIERKNSDKSTLI 412 (429) T ss_pred HHHhccCCCccccccceEEeCCCCCcCHHH-------HHHHHHHHhccCchHHHHHhCCCCCCH-HHHHHHHHHHHHHHH Confidence 2 22222223 357776444422222 234555566789999999877666652 223334444432110 Q ss_pred CCCcccccccchhhhcCccCCcccccCCCcccccC Q lcl|Aclame:pro 462 FDTGGFGEETTPADFLGERGSPIESPRGRTEFDFG 496 (533) Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (533) .+ .+++ ++.. .++++.- T Consensus 413 ~~---------------~~~~-~~~~--~~~~~~~ 429 (429) T protein:vir:98 413 SR---------------QAGG-LNGQ--NTTTILE 429 (429) T ss_pred HH---------------HHhh-hcCC--CCCCCCC Confidence 00 0000 0000 0000000 No 197 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=96.74 E-value=0.00037 Score=39.39 Aligned_cols=370 Identities=10% Similarity=-0.009 Sum_probs=155.4 Q ss_pred CCccccchhhcccccCccccchHHHHHHHHHHhhc-----------------------------------ChhHHHHHHH Q lcl|Aclame:pro 42 MYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYT-----------------------------------DPLISTVLDI 86 (533) Q Consensus 42 ~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~-----------------------------------~PEV~~AId~ 86 (533) +.-....-... .+.. ....+...+.+.++-+.- ++-+...|+. T Consensus 1 ~~~e~~~~~i~-~~~~-~~~~~~~~~~~~~~Yy~g~hdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~ 78 (471) T protein:vir:10 1 MEIEVIKKIIS-SQMV-KHGKFVSQAAEAEKYYRNENDIKRKRKPADKKGAENEAKAEDNAFRNADNRISHNWHQLLLDQ 78 (471) T ss_pred CCHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHhccccccccccchhhhhcccccccccccccccccceeccchhHHHHHh Confidence 11110000000 0000 000011111111111100 1122222332 Q ss_pred hhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceee Q lcl|Aclame:pro 87 IADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFS 166 (533) Q Consensus 87 Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik 166 (533) .|...+ +.|+.+..++.+..+.+. .+.+ -+|+....+..+.+++.|+.|.+...|.. +|-..++.+||+.+- T Consensus 79 ~~~yl~-----G~p~~~~~~~~~~~~~l~-~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~-~g~~~~~~~~p~~~~ 150 (471) T protein:vir:10 79 KKAYAL-----TYPPTFDVDDKKVNDMIV-DVLG-DDYERISKQLCVNAGNAGIAWLHVWKDAS-DNSFRYACVDSKEVI 150 (471) T ss_pred hhhhhc-----ccCceeccCChHHHHHHH-HHHh-cCHHHHHHHHHHHHhhCCeEEEEEEeeCC-CCeeEEEEEcccceE Confidence 232222 467777766644333332 2222 37899999999999999999999988754 455679999999999 Q ss_pred EEeeccCcE------EEEE---------------eccc--ceecccCCc-cc--------------------------cc Q lcl|Aclame:pro 167 KRYNPETDT------WYYV---------------ITDV--YRNVVSGYF-NE--------------------------DI 196 (533) Q Consensus 167 ~v~d~~g~~------e~y~---------------y~~~--~~~~~~~~~-~~--------------------------~~ 196 (533) ++++..+.. .+|. |+.. +.+...++. .. .+ T Consensus 151 ~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~~~vy~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (471) T protein:vir:10 151 PIYSKSLDKKSIGVLRVYSSIDETDGKNYTVYEYWNDKECSFYRHEKEKPLEELETFQAISLIDTMNGDRSSDNSFKHDF 230 (471) T ss_pred EEEcCCCCCceEEEEEEEEeeccCCCceeEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCC Confidence 998765431 1221 1111 001100000 00 00 Q ss_pred CcccEEEEecCcccCcccccchhHHHHHHHHHHHHHH--HHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHh Q lcl|Aclame:pro 197 PEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLM--EDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQY 274 (533) Q Consensus 197 ~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~--EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~ 274 (533) ..=.+++|.- ...|+|-|+..+.....|-++ .-+-.+ +-+..| +..+...+. ....+.+.. +.++ T Consensus 231 g~iPvv~~~n------~~~~~sd~e~v~~liDa~d~~~S~~~~~~-~~~~~~---~lv~~g~~~--~~~~~~~~~-~~~~ 297 (471) T protein:vir:10 231 GLVPFIPFKN------NEIETNDLKPIKDLVDVYDKVFSGFVNDT-DDVQEV---IFVLTNYGG--QDKQEFLED-LKRY 297 (471) T ss_pred CceeEEEecc------CCCCCCchHHHHHHHHHHHHHHHHHHHHH-HHhhCc---eeeeecCCc--cccchhHHH-hhcC Confidence 0001122211 124556565543333333221 112112 222222 222222111 011111111 1111 Q ss_pred hhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC-CCCC-hHHHHHHHHHHHHHhcCCCeeeccCCC Q lcl|Aclame:pro 275 KRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG-SKVD-LAEDVEYMLNRLISALKVPKAFIGYEG 352 (533) Q Consensus 275 knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG-~nlg-~i~Dv~Yf~~kLy~aL~VP~srl~~~~ 352 (533) +.+.-..+| .+.+..++.|-- .+.. .-.-++-+.+.+|+..++|-. . .. T Consensus 298 --~~i~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~tp~~--~-~~ 348 (471) T protein:vir:10 298 --KMIKMDNDG------------------------MGDQSGVTTIAIDIPTEARNLILERTKKQIFISGQGVNP--E-TD 348 (471) T ss_pred --CeEEecCCC------------------------CccCccceEEeecCChHHHHHHHHHHHHHHHHHhCCcCC--C-cc Confidence 111111111 122223343321 2332 223477888999999999953 2 23 Q ss_pred CccchhhhhHHHHHHH---HHHHHHHHHHHHHHhhhh--hhc--cCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 353 DVNAKNTLATQDIKFN---NTIKRIQGFFVEELERMV--RMN--KEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAER 425 (533) Q Consensus 353 ~~gr~~eI~rde~kF~---kfI~rLr~~F~~~l~~qL--ilk--~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~ 425 (533) ++|..|..+.. .++. .-+.+.|+.|...|++.+ |++ |.....+.++.|.+.---.+...+++ ++. T Consensus 349 ~~gn~Sg~Alk-~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~d~~~i~i~f~~~~p~n~~e~~~~-------~~k 420 (471) T protein:vir:10 349 KLGNSSGVALK-FLYSLLELKAGNMETQFRSGYATLVKMILKHLGLSDKLKIKQTWTRNSINNDTEMAQV-------VST 420 (471) T ss_pred cccCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeEEEeCCCCCCCHHHHHHH-------HHH Confidence 45655555542 2222 246666667776665543 222 33333345677775544444433333 344 Q ss_pred hhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcc-----cCCCCCcccccccc Q lcl|Aclame:pro 426 LKGWVREDWIYSNILQIPYDLKPQEEVAEAAGG-----GGLFDTGGFGEETT 472 (533) Q Consensus 426 ~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~-----~~~~~~~~~~~~~~ 472 (533) +...+|+.++.+.+-..+|-. ++-+.|++|.. ...+.+.+.+.|+- T Consensus 421 l~g~iS~et~~~~~p~v~D~~-~E~eri~~E~~~~~~~~~~~~~~~~~~e~~ 471 (471) T protein:vir:10 421 LATITSRENVAKSNPIVEDWQ-DELRLQKAEQEGRSEKLYDMEEVEHESEVE 471 (471) T ss_pred HhccCchHHHHHhCCCCCCHH-HHHHHHHHHHHHHHhcccccCCCCCccccC Confidence 456799999998887777611 11233333321 11122222221111 No 198 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=96.70 E-value=0.0004 Score=39.19 Aligned_cols=404 Identities=13% Similarity=0.101 Sum_probs=179.8 Q ss_pred CCCcchhhhhhhHHHHHHhhccccccc-CcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMG-APHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPL 79 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~-~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PE 79 (533) ||.=....+..=..+-+....++.-+. ..+-..|-+.|... +.-. . +.. | .| +. .+- T Consensus 11 ~p~d~~~~~~~l~~~i~~~~~~~~r~~~~~~yy~g~~~i~~~---~~~~---~-----~~~-~-------~k-i~--~n~ 68 (453) T protein:vir:39 11 FPKDEPITNEVVTKFMEKHRLEVARYEYLKNMYRGIMAIDAE---PTKD---L-----WKP-D-------NR-LT--VNF 68 (453) T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhcC---CCcc---c-----cCc-c-------ce-ee--cch Confidence 665444333332222222111111111 01112333333211 1000 0 000 1 11 32 356 Q ss_pred HHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEE Q lcl|Aclame:pro 80 ISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQV 159 (533) Q Consensus 80 V~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ 159 (533) +.-+|+..+...+ +.|+.+..++.+ .++.+..+..--+|+....+.++..++.|+.|++...|. +|-..++. T Consensus 69 ~~~ivd~~~~~l~-----g~~~~~~~~d~~-~~~~l~~i~~~N~~~~~~~~~~~~~~~~G~~~~~v~~d~--~g~~~i~~ 140 (453) T protein:vir:39 69 TKYIVDTFTGYFN-----GIPVKKSHSDKE-TLSKLQEFDNLNDMEDEESELAKMACIYGRAFELLYQNE--ETQTNVIY 140 (453) T ss_pred HHHHHHHHhhhhc-----ccCceeccCChH-HHHHHHHHHHhcChhHHHHHHHHHHhhcCeEEEEEEecC--CCceEEEE Confidence 6677777776543 455666555422 233344444445799999999999999999999887763 45567999 Q ss_pred cCcceeeEEeeccCcE--EEE--------------Eeccccee--cccC-C------cccccCcccEEEEecCcccCccc Q lcl|Aclame:pro 160 VSPYIFSKRYNPETDT--WYY--------------VITDVYRN--VVSG-Y------FNEDIPEEDVIHFSHKIDTNFFP 214 (533) Q Consensus 160 ldP~~ik~v~d~~g~~--e~y--------------~y~~~~~~--~~~~-~------~~~~~~~~dvi~~~~~~~~d~~~ 214 (533) ++|+.+-++++..... .++ +|++...+ ...+ . ..+.+..=.+++|.. .+ T Consensus 141 ~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~~yt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n------~~ 214 (453) T protein:vir:39 141 NTPENMFMVYDDTIKQEPLFAVRYGYDDDYKLYGEVYTKETTYALNGTMGFYNMTEQAPNPFDDLPVVEFYF------NE 214 (453) T ss_pred EcccceEEEecCCCCCeEEEEEEEEEeCCeEEEEEEEeCCeEEEEEecCCceeeecccccCCCceeEEEecC------CC Confidence 9999999999765532 111 12222111 1100 0 001111112333321 13 Q ss_pred ccchhHHHHHHHHHHHHH-HHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeeccccc Q lcl|Aclame:pro 215 YGRSYLESARAIWNQLRL-MEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNY 293 (533) Q Consensus 215 ~g~s~L~~Aik~~NqLrm-~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~ 293 (533) .|.|-|+..+....-+-. +-+....-+-.+.|-+-+. ..+++... +. .++...+.....+ T Consensus 215 ~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~p~~~~~---g~~~~~~~----~~----~~~~~~~~~~~~~-------- 275 (453) T protein:vir:39 215 ERMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTFL---GAAVEEED----LK----NIRSNRVINYYGE-------- 275 (453) T ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeee---cCCCCchh----hh----hhhhcceeeecCC-------- Confidence 566655554443332222 2222223344444433322 22333211 11 1111111110000 Q ss_pred chhhhHHhhhhcccccCCCcceeeecCC-CCCChHH-HHHHHHHHHHHhcCCCeeeccCCCCccchhhhhH--HHHHHHH Q lcl|Aclame:pro 294 FSIESILKDYFIPRRGDRRAVEIDILQG-SKVDLAE-DVEYMLNRLISALKVPKAFIGYEGDVNAKNTLAT--QDIKFNN 369 (533) Q Consensus 294 ~n~~smleDywlprR~g~~gtEi~TLpG-~nlg~i~-Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~r--de~kF~k 369 (533) -..+.+-.+.+|-- .+...+. -++-+.+.+|...++|- +. ...+|..+..+. -+..... T Consensus 276 --------------~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~I~~~s~~p~--~~-~~~~gn~Sg~Al~~~~~~l~~ 338 (453) T protein:vir:39 276 --------------SSEAKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVAN--IS-DESFGSSSGVSLAYKLQAMSN 338 (453) T ss_pred --------------CCCCCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcc--cc-cccccCChHHHHHHHHHHHHH Confidence 00122334555532 3544443 47788888999999995 22 344555444443 2222344 Q ss_pred HHHHHHHHHHHHHhhhh--hh---ccCCCccc---eeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhc Q lcl|Aclame:pro 370 TIKRIQGFFVEELERMV--RM---NKEFADQD---FRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQ 441 (533) Q Consensus 370 fI~rLr~~F~~~l~~qL--il---k~i~t~ee---w~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~ 441 (533) -+.+.|+.|...|++-+ ++ ...-...+ ..+.|...-.-.+ .+.+++++.+...++++++.+.+-. T Consensus 339 ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~v~f~~~~p~~~-------~~~a~~~~kl~g~is~et~l~~l~~ 411 (453) T protein:vir:39 339 LALSFQRKFQSSLNSRYKLYCELSTNVSNKEAWKDIEYTFTRNEPKDI-------KEQAETANILMGITSQETALSVISV 411 (453) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCcCH-------HHHHHHHHHHhccCChHHHHHhCCC Confidence 56666677776655432 21 11112233 3677764333222 3334556666678999999976655 Q ss_pred CChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcc Q lcl|Aclame:pro 442 IPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTE 492 (533) Q Consensus 442 ~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (533) .+| -.++-+.|++|........ +....+..++..++|...+| T Consensus 412 v~D-~~~E~~ri~~E~~~~~~~~--------~~~~~~~~~~~~~~~~~~~e 453 (453) T protein:vir:39 412 IPD-VQAEMEKIKKEEASTAIFD--------KDKQPSEKGTDTVVPETNEE 453 (453) T ss_pred CCC-HHHHHHHHHHHHHHHHHHH--------HhccCCCCCCCCCCCCcCCC Confidence 544 3333455665544222110 00011111111112221111 No 199 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=96.60 E-value=0.00048 Score=38.80 Aligned_cols=411 Identities=13% Similarity=0.076 Sum_probs=181.4 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCC-CCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcC----- Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAG-GSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTD----- 77 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~-gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~----- 77 (533) |.-|++.- .+...+...++.-+.....+ ....++.+ ...-|++|++++.-+ T Consensus 1 m~~~~~ik--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------------------~~~~I~~w~~~Y~g~~~~~~ 57 (517) T protein:vir:98 1 MKVIQRIK--NFFKRGGYALSGQTLKSINDHEKINIDPN---------------------ELARIERNLRQYEGDYPQVE 57 (517) T ss_pred CchHHHHH--HHHHHHHHHhcccchhHhhcCCceecCHH---------------------HHHHHHHHHHHhcCCCcccc Confidence 33333331 22334444444322222111 11112211 111233333322111 Q ss_pred ----------------hhHHHHHHHhhceeeecCCCCceeeeeccccc----------ccHHHHHHHHHHhhhHHHHHHH Q lcl|Aclame:pro 78 ----------------PLISTVLDIIADECTIPNENGNIVDVVTKDIE----------LAKAILSYLDYVINIEKNAYPI 131 (533) Q Consensus 78 ----------------PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e----------~s~si~~~i~~ll~f~~~~~e~ 131 (533) +-...+..++++-++ +. +.+|.+.+.+ -.++-.+.+++--+|...+.+. T Consensus 58 ~~~~~~~~~~~~~~sl~~~~~i~~~~A~Ll~----~e-~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~n~f~~~~~~~ 132 (517) T protein:vir:98 58 YINSQGKIQERDYMTLNLRKLSADVLSGLVF----NE-QCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDY 132 (517) T ss_pred cccccccccccceeecCcHHHHHHHhhhhhc----CC-cceEEecccccccccccchhHHHHHHHHHHHhccHHHHHHHH Confidence 112234444443221 11 1222222211 1122233444444699999999 Q ss_pred HHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEe-eccCcE----------------EEEE------e-------- Q lcl|Aclame:pro 132 IRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRY-NPETDT----------------WYYV------I-------- 180 (533) Q Consensus 132 ~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~-d~~g~~----------------e~y~------y-------- 180 (533) +-..+.-|..+|-..+|+ ++| .+.+++|.++-+.. +-.+.. .||. + T Consensus 133 ~e~a~a~G~~a~k~~~d~--~~~-~I~~v~ad~~~Pl~~~~~~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~~ 209 (517) T protein:vir:98 133 LEPTFALGGLTVRPYVDN--GEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGES 209 (517) T ss_pred HHHHhhhCCEEEEEEEeC--Cee-EEEEEcCCeeEEEEecCCCeEEEEEEEEEEEeecCCceEEEEEEEEecCceeccCC Confidence 999999999999888874 334 58888998886532 222211 1221 0 Q ss_pred -----cccceecccC--Cccc-------ccCc---------ccEEEEec---CcccCcccccchhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 181 -----TDVYRNVVSG--YFNE-------DIPE---------EDVIHFSH---KIDTNFFPYGRSYLESARAIWNQLRLME 234 (533) Q Consensus 181 -----~~~~~~~~~~--~~~~-------~~~~---------~dvi~~~~---~~~~d~~~~g~s~L~~Aik~~NqLrm~E 234 (533) |..+...... +... .+++ --++||.. +..+...|+|+|-+++|+..+.-|-..- T Consensus 210 ~y~I~n~ly~s~~~~~lG~~v~L~~~~e~l~~~~~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~ 289 (517) T protein:vir:98 210 LYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTY 289 (517) T ss_pred cEEEEEEEEecCCCccccccccccccccCCCcceeECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHH Confidence 0000000000 0000 0111 12333432 3333345799999999887776666444 Q ss_pred HHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcc Q lcl|Aclame:pro 235 DALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAV 314 (533) Q Consensus 235 dalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gt 314 (533) +. +.|..|.=.+|+|..+. =+++.... +......++|... +. +..+.. + .+.. T Consensus 290 s~--~~~e~~~g~~~i~vp~~-~l~~~~~~-------~g~~~~~~~d~~~------~~---y~~~~~----~--~~~~-- 342 (517) T protein:vir:98 290 DQ--FWWEIKMGQRTVFVSDV-MLRTVPDE-------SGMPPPQVFDPDV------NV---YKSIRM----G--TDEE-- 342 (517) T ss_pred HH--HHHHHHhCCcceecChh-hhccccCC-------CCcccCCCCCccc------ce---eeeccC----C--CCCC-- Confidence 44 34677776666665221 11000000 0000011122111 11 111100 0 1122 Q ss_pred eeeecCCCC-C-ChHHHHHHHHHHHHHhcCCCeeeccCCCCc-cchhhhhHHHHHHHHHHHHHHHHHHHHHhh----hh- Q lcl|Aclame:pro 315 EIDILQGSK-V-DLAEDVEYMLNRLISALKVPKAFIGYEGDV-NAKNTLATQDIKFNNTIKRIQGFFVEELER----MV- 386 (533) Q Consensus 315 Ei~TLpG~n-l-g~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~-gr~~eI~rde~kF~kfI~rLr~~F~~~l~~----qL- 386 (533) .|+++...= . .-..-+.++.+.+-...|+|.+.|+.++.. .-++||...+..-..-+.+.|+.+.+.|+. .| T Consensus 343 ~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls~~t~~~~~~~~kTATEi~s~~~~~~~t~~~~~~~~~~aL~~lv~~i~~ 422 (517) T protein:vir:98 343 FVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLE 422 (517) T ss_pred ceeeeccccchHHHHHHHHHHHHHHHHHhCCCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 244333221 1 123458888999999999999999976653 346788776666666777777776654433 22 Q ss_pred ------hhccCC-CccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHhcCChhhhHH-HHHHhhhc Q lcl|Aclame:pro 387 ------RMNKEF-ADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRED-WIYSNILQIPYDLKPQ-EEVAEAAG 457 (533) Q Consensus 387 ------ilk~i~-t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~-~i~k~il~~tde~~~q-~~~i~~E~ 457 (533) ++.+.+ ...+..++|. ....+=+++++-. .+++.+. .-+++. |||+ ...+|+|+.++ -..|+.|. T Consensus 423 l~~~~~~~~~~~~~~~~v~v~f~--D~i~~D~~~~~~~-~~~~v~a--G~ms~~~~i~~-~~g~~eeeA~~e~~~i~~E~ 496 (517) T protein:vir:98 423 LAKTYKLFGGEIPSAEHIGVDFD--DGVFQDRSALLRF-YGQAKTF--GFIPTVEAIQR-IFKVPKKTAEQWLEEIRKDQ 496 (517) T ss_pred HHHHHhhcCCCCCCCcceEEEcC--CCCCCCHHHHHHH-HHHHHhc--CCCCHHHHHHH-hCCCChHHHHHHHHHHHHhc Confidence 122222 2223344443 3322222222222 2222222 446664 5666 55789877644 35577765 Q ss_pred ccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCcc Q lcl|Aclame:pro 458 GGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEE 502 (533) Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (533) ....+ .+ ... +.+.+..|+++ T Consensus 497 ~~~~~-~~------------------~~~-----~~~~~~~gd~e 517 (517) T protein:vir:98 497 IELDP-VT------------------ISQ-----RAQKRMFGDEE 517 (517) T ss_pred cccCC-CC------------------ccc-----cccCCCCCCCC Confidence 42211 00 000 12222323332 No 200 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=96.60 E-value=0.00048 Score=38.79 Aligned_cols=406 Identities=12% Similarity=0.038 Sum_probs=161.1 Q ss_pred hcccccccCccc--CCCC--cccCCCCCccccchhhcccccCccccchHHHHHHHHHHhh-------------------- Q lcl|Aclame:pro 20 LSPMYGMGAPHG--AGGS--SMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDY-------------------- 75 (533) Q Consensus 20 ~~~~~s~~~p~~--~~ga--s~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~-------------------- 75 (533) |+.+|---.+.- ..+. ..+... ....-..+. -+.. + ..+.+|+.+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~--~~i~---~---~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~ 71 (503) T protein:vir:59 1 MADIYPLGKTHTEELNEIIVESAKEI-AEPDTTMIQ--KLID---E---HNPEPLLKGVRYYMCENDIEKKRRTYYDAAG 71 (503) T ss_pred CcccccCChhhHHhHHHhhhhhhhhc-cchhHHHHH--HHHH---h---hcHHHHHHHHHHhccccchhhccchhccccc Confidence 544443211110 0000 000000 000000000 0000 0 00111222111 Q ss_pred -------------cChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCcee Q lcl|Aclame:pro 76 -------------TDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMF 142 (533) Q Consensus 76 -------------~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~ 142 (533) .++-...+|+..+...+ +.|+.+..++.+..+.+.. +.. -+|+.+..+.++..++.|+.| T Consensus 72 ~~~~~~~~~~~ri~~n~~~~ivd~~~~yl~-----g~~~~~~~~d~~~~~~l~~-~~~-n~~~~~~~~~~~~~~~~G~~~ 144 (503) T protein:vir:59 72 QQLVDDTKTNNRTSHAWHKLFVDQKTQYLV-----GEPVTFTSDNKTLLEYVNE-LAD-DDFDDILNETVKNMSNKGIEY 144 (503) T ss_pred ccccccccccceeecchHHHHHHHHHhhhh-----cCCeeeccCcHHHHHHHHH-HHh-cCHHHHHHHHHHHHhhCCeEE Confidence 02233444444443332 4455565554332222221 111 279999999999999999999 Q ss_pred EEEeecCCCCCeeeeEEcCcceeeEEeeccCc--EE----EE--------------Eeccccee--ccc---CCcccc-- Q lcl|Aclame:pro 143 LHILEKGSDGTIEKFQVVSPYIFSKRYNPETD--TW----YY--------------VITDVYRN--VVS---GYFNED-- 195 (533) Q Consensus 143 ~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~--~e----~y--------------~y~~~~~~--~~~---~~~~~~-- 195 (533) ++.-+|. +|-..++.++|+.+-++++.... .. +| +|+....+ ... ...... T Consensus 145 ~~v~~d~--dg~~~i~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~ 222 (503) T protein:vir:59 145 WHPFVDE--EGEFDYVIFPAEEMIVVYKDNTRRDILFALRYYSYKGIMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYG 222 (503) T ss_pred EEEeecC--CCceEEEEEccceeEEEEeCCCCCceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEEcCCccccccccc Confidence 9988764 46667999999999999876542 11 11 12221110 000 000000 Q ss_pred ----------------cCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeecCCCCC Q lcl|Aclame:pro 196 ----------------IPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLME-DALMLYRVVRSVDRRVFYVDVGNV 258 (533) Q Consensus 196 ----------------~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~E-dalVIyRi~RAPeRr~fyidvGnl 258 (533) +..=.++.|. . .+.|.|-|+.++....-+-.+- +.+..-+..+.|-. ++...+. T Consensus 223 ~~~~~~~~~~~~~~~~~~~vPiv~~~-----n-n~~~~sd~~~~~~liDa~d~~~s~~~~~~~~~~~~~~---v~~g~~~ 293 (503) T protein:vir:59 223 ENNPRPHMTKGGQAIGWGRVPIIPFK-----N-NEEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVY---VLKNYDG 293 (503) T ss_pred ccccccceeecceeccCCccceEEec-----C-CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCee---EeecCCc Confidence 0000111111 1 2357776776555555444332 22233344444432 2221111 Q ss_pred chhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC-CCCChH-HHHHHHHHH Q lcl|Aclame:pro 259 PPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG-SKVDLA-EDVEYMLNR 336 (533) Q Consensus 259 p~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG-~nlg~i-~Dv~Yf~~k 336 (533) . ...+....+ ..+ +++ .+| ++-+ ++.|-. .+.+.. .-++-+++. T Consensus 294 ~--~~~~~~~~~-~~~--~~~------------------------~~~---~~~~--~~~l~~~~~~~~~~~~~~~l~~~ 339 (503) T protein:vir:59 294 E--NPKEFTANL-RYH--SVI------------------------KVS---GDGG--VDTLRAEIPVDSAAKELERIQDE 339 (503) T ss_pred c--ccchhhhhh-hcc--cce------------------------ecc---CCCc--ceeEeccCCHHHHHHHHHHHHHH Confidence 1 011111110 000 000 011 1111 233322 133322 336788888 Q ss_pred HHHhcCCCeeeccCCCCccchhhhhH--HHHHHHHHHHHHHHHHHHHHhhh--hhh-----ccCCCc---cceeEEecCC Q lcl|Aclame:pro 337 LISALKVPKAFIGYEGDVNAKNTLAT--QDIKFNNTIKRIQGFFVEELERM--VRM-----NKEFAD---QDFRLVMNRS 404 (533) Q Consensus 337 Ly~aL~VP~srl~~~~~~gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~q--Lil-----k~i~t~---eew~~~f~~d 404 (533) +|....+|---.+ ...|..|..+. .......-+.+.++.|...|+.- ||+ .+.... .+..+.|... T Consensus 340 i~~~s~~p~~~~~--~~~~~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~i~i~f~~~ 417 (503) T protein:vir:59 340 LYKSAQAVDNSPE--TIGGGATGPALENLYALLDLKANMAERKIRAGLRLFFWFFAEYLRNTGKGDFNPDKELTMTFTRT 417 (503) T ss_pred HHHHhcccCCCcc--cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEeCCC Confidence 9999999853222 11233333332 22223345666666677666543 222 222221 2357777654 Q ss_pred cHHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCC Q lcl|Aclame:pro 405 NSIVEGERFAVIEQRIGIAERL--KGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGS 482 (533) Q Consensus 405 n~f~E~ke~ei~~~R~~~~~~~--~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (533) -.-.+.. .++++..+ .+.+++.++.+.+-..+| -.++-+.|++|....... .....+ T Consensus 418 ~p~d~~~-------~~~~~~kl~~~GiiS~et~l~~l~~v~d-~~~E~~ri~~E~~~~~~~-------------~~~~~~ 476 (503) T protein:vir:59 418 RIQNDSE-------IVQSLVQGVTGGIMSKETAVARNPFVQD-PEEELARIEEEMNQYAEM-------------QGNLLD 476 (503) T ss_pred CCCCHHH-------HHHHHHHHHhCCCCchHHHHHhCCCCCC-HHHHHHHHHHHHHHHHhh-------------hccccC Confidence 4433332 33444444 357899999887655544 222233444443211110 000011 Q ss_pred cccccCCCcccccCCCCCccCCCccCcCcccC Q lcl|Aclame:pro 483 PIESPRGRTEFDFGTEGGEELGGELNLGGAFE 514 (533) Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (533) +...+.. ++.+.++.++.+.+|. |++. T Consensus 477 ~~~~~~~-~~~~~~~~~~~~~~~~----g~~~ 503 (503) T protein:vir:59 477 DEGGDDD-LEEDDPNAGAAESGGA----GQVS 503 (503) T ss_pred ccCCCCC-CCcCCCCCCcccCCCC----CCcC Confidence 1011111 1112222223333332 2222 No 201 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=96.51 E-value=0.00056 Score=38.42 Aligned_cols=356 Identities=14% Similarity=0.096 Sum_probs=146.8 Q ss_pred cccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCce Q lcl|Aclame:pro 21 SPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNI 100 (533) Q Consensus 21 ~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~ 100 (533) =.+|+- .-..... ... ++. ++ +....|.. ...+.+-|.+||+.|++.+-... T Consensus 1 M~if~~-~~~~~~~----~~~--~~~-~~--~~~~~~~~-------------~~~~~~~v~~~v~~Ia~~iA~lp----- 52 (378) T protein:vir:94 1 MNLFGK-VVSFSRG----KLN--NDT-QR--VTAWQNEA-------------VEYTSAFVTNIHNKIANEITKVE----- 52 (378) T ss_pred CchhHH-hHhhhhc----ccc--cCc-ce--eeeeecch-------------hhhhhHHHHHHHHHHHHhHhhCc----- Confidence 111111 1111111 000 000 00 00011111 11123568999999997743221 Q ss_pred eeeecccc-c-----ccHHHHHHHHHHhhh--------HHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceee Q lcl|Aclame:pro 101 VDVVTKDI-E-----LAKAILSYLDYVINI--------EKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFS 166 (533) Q Consensus 101 v~v~l~~~-e-----~s~si~~~i~~ll~f--------~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik 166 (533) +.+-.... . ........+..+|+. ....+..++.++..|+.|..++.++..+.+. T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~----------- 121 (378) T protein:vir:94 53 FNHVKYKKSDVGSDTLISMAGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSETGELL----------- 121 (378) T ss_pred eeeeeecccccccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCCcEE----------- Confidence 11110000 0 001111334555543 4567788999999999998876654333232 Q ss_pred EEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 167 KRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSV 246 (533) Q Consensus 167 ~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAP 246 (533) ++.|.. .+..+++++|+|+.+-... .-+.|.++.+...+ ..++-- +- T Consensus 122 ----------~~~~~~---------~~~~~~~~dvih~~~~~~~---~~~~~~~~~~~~~~------~~~~~~-----~~ 168 (378) T protein:vir:94 122 ----------DLLFAN---------DKKEYKPEELVRLTSPFYI---NEDTSILDNALASI------QTKLEQ-----GK 168 (378) T ss_pred ----------EEEEec---------CcEEechhceeeecCcCCc---ccchhHHHHHHHHH------HHHHhh-----CC Confidence 222211 1123567899999742222 13456777765432 222211 11 Q ss_pred cceeeecCCC-CCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC-CC Q lcl|Aclame:pro 247 DRRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KV 324 (533) Q Consensus 247 eRr~fyidvG-nlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nl 324 (533) -| +++.+. .+...++++....+...+++..--..+ |.+ + .| ..|.+++.|.-. .- T Consensus 169 ~~--g~l~~~~~l~~~~~~~~~e~~~~~~~~~~~~~n~-~~~---------~-vl----------~~g~~~~~l~~~~~~ 225 (378) T protein:vir:94 169 LR--GLLKINAFLDIDNTQEYREKALATIKNMQEGSSY-NGL---------T-PV----------DNKTEIVELKKDYSV 225 (378) T ss_pred cc--cceeeCCcCCHHHHHHHHHHHHHHHHHhhccccc-ccc---------e-ec----------cCCceEEEccCChHH Confidence 12 233333 465555555555555555433211111 211 1 11 134566666432 21 Q ss_pred ChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhcc-----CCCcccee Q lcl|Aclame:pro 325 DLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNK-----EFADQDFR 398 (533) Q Consensus 325 g~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~-----i~t~eew~ 398 (533) -+++.++|..+.+.+++|||...|.. ..++ .+-+-|.++ |.-+-.++.+.|.+.|+... ......-+ T Consensus 226 ~~~~~~~~~~~~Ia~~fgvPp~~l~g-----~~~e--~~~~~f~~~tl~P~~~~ie~~l~~~Ll~~~e~~~g~~~~~~~~ 298 (378) T protein:vir:94 226 LNKDEIDLIKSELLTGYFMNENILLG-----TATQ--EQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYER 298 (378) T ss_pred hhHHHHHHHHHHHHHHhCCCHHHhcC-----CchH--HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhhcccce Confidence 24778899999999999999999852 1111 112235443 45555667777777776431 11111112 Q ss_pred EEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcC Q lcl|Aclame:pro 399 LVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLG 478 (533) Q Consensus 399 ~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~ 478 (533) +.|..+. +.... ++.|.+.+..+ -+..-||..|.-. .++..++ ++-++=..+. T Consensus 299 ~~f~~~~----l~~~d-~~~~~e~~~~~----------~~~G~~t~NE~R~-----~~g~~p~---~ggd~~~~~~---- 351 (378) T protein:vir:94 299 IIVDNQL----FKFAT-LKELIDLYHEN----------INGPIFTQNQLLV-----KMGEQPI---EGGDVYIANL---- 351 (378) T ss_pred eEeecch----hhhcC-HHHHHHHHHHH----------HhCCCcCHHHHHH-----HhCCCCC---CCCCeeeecc---- Confidence 3333222 22111 12444444332 1223466533321 1222222 1111111111 Q ss_pred ccCCcccccCCCcccccCCCCCccCCCccCcC Q lcl|Aclame:pro 479 ERGSPIESPRGRTEFDFGTEGGEELGGELNLG 510 (533) Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (533) -..|+..+...+. ...++..|+|.|=+ T Consensus 352 -n~~~~~~~~~~~~----~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 352 -NAVAVKNLSDLQG----NRKDVTSTDETNNQ 378 (378) T ss_pred -cccchhcchhccc----ccCCCCCCCCCCCC Confidence 1112221111101 11111122221111 No 202 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=96.47 E-value=0.00059 Score=38.29 Aligned_cols=422 Identities=9% Similarity=-0.011 Sum_probs=152.4 Q ss_pred ccCCCCCccccchhhcccccCccccc--hHHHHHHHHHHhhcChhHHH------------------------------HH Q lcl|Aclame:pro 37 MIPINMYHPFATAGYASRFYGGIEFN--RFFLYDMYDRMDYTDPLIST------------------------------VL 84 (533) Q Consensus 37 ~i~~~~~~~~~~~~~~~~~ygg~~~n--~~~li~~YR~m~~~~PEV~~------------------------------AI 84 (533) ++++=.+-+.-. ..+ +.--.+.+ ....+.+|+.+...+ +=.. =. T Consensus 1 ~~~~~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~~~~~~~YY-~g~h~Il~r~~~~~~~~~~~~~d~~~~nnki~~nf~ 76 (537) T protein:vir:78 1 MTSPLLNKPIDQ--LGG-LLNTEITTYMASNHIKWAHIGENYY-NQENDIEKSRIFYMNDKGQLREDNYASNVKISHGFF 76 (537) T ss_pred CCcccccccHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHh-cccchhhhcccccccccccccccccccccccccchH Confidence 111111111000 000 00000000 001122332221100 1010 01 Q ss_pred HHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh--hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCc Q lcl|Aclame:pro 85 DIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI--NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSP 162 (533) Q Consensus 85 d~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll--~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP 162 (533) ..||+..+.+= =+.||.+..++ +-++++.+.+...+ +|++..+++++.+.+.|+.|.+.-+|. +|-..+..+|| T Consensus 77 k~Ivd~~~~yl-~G~Pv~~~~~d-~~~~e~~~~l~~~~~~~~~~~~~el~~~~s~~G~ay~~~y~de--~~~~~~~~i~p 152 (537) T protein:vir:78 77 TELVDQLAQYL-LSNGVEVKVKD-EDNTQLDEILQEYFDEDFQATIDTLVTNASKKGFEGIFARTTS--EGKLKFQTVDG 152 (537) T ss_pred HHHHHHHhhhh-cccCceeecCc-chhHHHHHHHHHHhhccHHHHHHHHHHHHhhcCeeEEEeeecC--CCceEEEEEcc Confidence 11222222221 15677777654 33444555454444 588899999999999999999988863 46667999999 Q ss_pred ceeeEEeeccCcEEE----E-------------------Eecccc--eecccCCc-------ccccCcccEEEEe----- Q lcl|Aclame:pro 163 YIFSKRYNPETDTWY----Y-------------------VITDVY--RNVVSGYF-------NEDIPEEDVIHFS----- 205 (533) Q Consensus 163 ~~ik~v~d~~g~~e~----y-------------------~y~~~~--~~~~~~~~-------~~~~~~~dvi~~~----- 205 (533) +.+-++++..++... | +|+... .+....++ .....+..+.|+. T Consensus 153 ~~~~pv~d~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evyt~~~i~~y~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 232 (537) T protein:vir:78 153 LTLIPVFDDYGVLKMIIRWYSEIRYSTKQQSTETIWHADVWNEEAVCYYIQDDEGVSTTYKLDEAYNPNPAPHVLAIEES 232 (537) T ss_pred ceeEEEEcCCCCceeEEEEEeeeeccccccCcceEEEEEEEcCCcEEEEEecCCcccccccccccccccccceeeecccc Confidence 999999987765321 1 111110 00000000 0000000000000 Q ss_pred -------------cCcccCc--------ccccchhHHHHHHHHHHHHHHHH--HHHHHHHhccccceeeecCCCCCchhh Q lcl|Aclame:pro 206 -------------HKIDTNF--------FPYGRSYLESARAIWNQLRLMED--ALMLYRVVRSVDRRVFYVDVGNVPPDK 262 (533) Q Consensus 206 -------------~~~~~d~--------~~~g~s~L~~Aik~~NqLrm~Ed--alVIyRi~RAPeRr~fyidvGnlp~~k 262 (533) ..+..+. ...|.|-|+..+.....|-++-= |=.+.-.. - .+..+....+ .. T Consensus 233 ~~~~~~~~~~~~~~~~~~g~iPvv~f~nn~~~~sd~e~v~~LiDayd~~~S~~an~~~~~~-~---~ilvi~g~~~--~~ 306 (537) T protein:vir:78 233 TDADFEDTDGYQVLGRSYSKFPFQLLYNNKDGMSDVKRVKSIIDDYDVMNCFLSNNLQDFS-E---AIYVVKGFSG--DS 306 (537) T ss_pred ccccccccccccccccCCcceeEEEeccCccCCCchhhhHHHHHHHHHHHHhhhhHHHHhc-C---ceeeeecCCC--cc Confidence 0000110 12455656654443333322111 11111111 1 1112111110 00 Q ss_pred HHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccC-CCcceeeecCCCCCC-hHHHHHHHHHHHHHh Q lcl|Aclame:pro 263 INEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGD-RRAVEIDILQGSKVD-LAEDVEYMLNRLISA 340 (533) Q Consensus 263 Aeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g-~~gtEi~TLpG~nlg-~i~Dv~Yf~~kLy~a 340 (533) ..+.++ .+.+|.+..-.| +.+.+.-|-+. +.. .-.-++-+.+.+|+- T Consensus 307 ~~~~~~------------------------------~l~~~~~i~v~~d~~~v~~l~~~~-~~~~~e~~ld~L~~~I~~~ 355 (537) T protein:vir:78 307 TDKLRQ------------------------------NIKAKKMIGVNGDNAGMEIQTVSI-PYEARKAKMDIDVENIYRS 355 (537) T ss_pred chhHHH------------------------------HHhhcCceeecCCCCceeEEEecC-CHHHHHHHHHHHHHHHHHh Confidence 011111 111121111111 12223333222 111 112266677777877 Q ss_pred cCCCeeeccCCCCccchhhhhHHHHHHHH---HHHHHHHHHHHHHhhhh--h-----hccC--CCccceeEEecCCcHHH Q lcl|Aclame:pro 341 LKVPKAFIGYEGDVNAKNTLATQDIKFNN---TIKRIQGFFVEELERMV--R-----MNKE--FADQDFRLVMNRSNSIV 408 (533) Q Consensus 341 L~VP~srl~~~~~~gr~~eI~rde~kF~k---fI~rLr~~F~~~l~~qL--i-----lk~i--~t~eew~~~f~~dn~f~ 408 (533) ..+|-. . +..+|+.|.++..- +|.- -+.+.++.|...|++.+ | +++. +...+.++.|.+.---. T Consensus 356 s~~~~~--~-~~~~gn~SGvAlk~-~~~~l~~ka~~ke~~f~~~l~~~~~~i~~~~~~~~~~~~d~~~i~i~f~~~~P~n 431 (537) T protein:vir:78 356 GMGFNS--T-AVGDGNVTNVVIKS-RYTLLAMKARKMETSLRKVLRWCADMVVSDIALRGLGEYDSNDICFEIEPHVLAN 431 (537) T ss_pred cCCCCC--c-cccccCCcHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccceeeEEeccCCCCC Confidence 777753 2 34456655555422 2221 23344444554444332 2 2332 22233467777554433 Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhccc-------CCCCCcccccccchhhhcCccC Q lcl|Aclame:pro 409 EGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGG-------GLFDTGGFGEETTPADFLGERG 481 (533) Q Consensus 409 E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~-------~~~~~~~~~~~~~~~~~~~~~~ 481 (533) +...++++.. +. -.+.+|+.++++..-..+|.+. ++.+++|... .........+.++|-.. ++ . T Consensus 432 ~~e~a~~~~~----l~-~~giiS~eT~l~~~p~vdd~e~--ek~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 502 (537) T protein:vir:78 432 ELDIATTRKT----EA-ETEALKIGNIMTVAPRIGDDET--LKLIAEELDLDYNELKDALAEQDAQSLDVSPDVQ-AM-L 502 (537) T ss_pred HHHHHHHHHH----HH-hcCcchHHHHHHhCCCCCCHHH--HHHHHHHHHhhhhhhhhhhhhhcccccCcCcchh-hh-c Confidence 4333333221 11 1478888888877545555321 1112222111 01000000111111111 10 1 Q ss_pred CcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCcccCCCC Q lcl|Aclame:pro 482 SPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELPF 529 (533) Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 529 (533) ++..+...+++ .++.++.|++|..-.-.| +.+ |+- T Consensus 503 ~~~~~~~~~~~-----~d~~~~~~~~~~~~~~~~----~~~----~~~ 537 (537) T protein:vir:78 503 DGLPVNANQPP-----VDPNQPVADPNVVPPTDP----NAV----PQT 537 (537) T ss_pred CCCCCCCCCCC-----CCccCCCCCCCCCCCCCC----ccC----CCC Confidence 11111111111 122333333333211111 111 111 No 203 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=96.47 E-value=0.00059 Score=38.29 Aligned_cols=379 Identities=11% Similarity=0.028 Sum_probs=148.0 Q ss_pred hcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCc Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGN 99 (533) Q Consensus 20 ~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~ 99 (533) |.=+..|..+++ ..+... .. + ...+. .+.+.+...|-|.+||+.|++.+=... T Consensus 1 MGlf~~~~~~~~----~~~~~~-~~--~-----------~~~~~-----~~~~~~~~~~~v~~~I~~ia~~iA~lp---- 53 (395) T protein:vir:98 1 MGILDFFSFKKS----GTLSDD-DS--G-----------STTSE-----KLTNVVLKEDALYKCVNYLARIISKST---- 53 (395) T ss_pred CcchhhhcCCCc----cccccc-cc--c-----------hhhhh-----hcchhhhhhHHHHHHHHHHHHHHhhCc---- Confidence 443333322221 111100 00 0 00000 111223346899999999998744322 Q ss_pred eeeeecccccccHHHHHHHHHHh--------hhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeec Q lcl|Aclame:pro 100 IVDVVTKDIELAKAILSYLDYVI--------NIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNP 171 (533) Q Consensus 100 ~v~v~l~~~e~s~si~~~i~~ll--------~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~ 171 (533) +.+--.+- .......+..+| .-....+..+..+++.|+.|..++.+. + .++++..+. .... T Consensus 54 -~~~~~~~~--~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~---~----~~~~~~~~~-~~~~ 122 (395) T protein:vir:98 54 -FRLKTPEK--LTENQKDWLYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPGK---G----IYVADSFTQ-DKKI 122 (395) T ss_pred -eeEEecCC--cccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCC---c----eecCCcccc-cccc Confidence 11111110 011112233343 234567788899999999998776542 1 112222111 1111 Q ss_pred cCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHH-HHHHHHHHHHHHhcccccee Q lcl|Aclame:pro 172 ETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQL-RLMEDALMLYRVVRSVDRRV 250 (533) Q Consensus 172 ~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqL-rm~EdalVIyRi~RAPeRr~ 250 (533) .....+.+.-. .......+++++|+|+.+...... .++.|.++.+.+.+... .....+-.+.-....+ +.. T Consensus 123 ~~~~~~~~~~~------~~~~~~~~~~~evih~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 194 (395) T protein:vir:98 123 SGSQFKVSRVQ------GQTYEKTFTFDQVIYLKNDNSDLM-SKVESLWEEYGELLGHVINNQKIANQIRFTMIPP-KDK 194 (395) T ss_pred cCcccceeeec------CceeeeEecCccEEEecCCCCCcc-ccccchhhhHHHHHHHHHHHHHHHHHHHHhhccc-ccc Confidence 11111111100 011124567889999986554332 34545444433333221 1111222221111111 222 Q ss_pred eecC-CCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC--CCC--C Q lcl|Aclame:pro 251 FYVD-VGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG--SKV--D 325 (533) Q Consensus 251 fyid-vGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG--~nl--g 325 (533) +.+. ..+.+.....+-.++..++++...- +..+.|. +--+|.+-+++++-+- ..+ - T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~-----------------~l~~g~~~~~l~~~~~~~~~~~~~ 255 (395) T protein:vir:98 195 VRERAQENSDGGRQSKSDKDFFKRTVEKIR--TESVVGI-----------------PVTANTNYEEYGSKNTGAVKSYVD 255 (395) T ss_pred ccccccccCCcHHHHHHHHHHHHHHHhhhh--cCCccee-----------------ecCCCceeEecccccccccChhHH Confidence 2221 1234444444444554444433221 1111110 0112222233322110 011 1 Q ss_pred hHHHH-HHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhccCCCccceeEEecC Q lcl|Aclame:pro 326 LAEDV-EYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFRLVMNR 403 (533) Q Consensus 326 ~i~Dv-~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~i~t~eew~~~f~~ 403 (533) ++-.. ++....+.+++|||...|+. ++ +.+.-..+.|.+. |.-+-.++++.|.+.|+...... ..+.|+|. T Consensus 256 q~~e~~~~~~~~Ia~~fgVP~~~l~~--~~---sn~e~~~~~f~~~tl~P~~~~ie~~l~~kll~~~~~~-~g~~f~~~- 328 (395) T protein:vir:98 256 DIKKLKDQYMAEFAEMLGIPISLLHG--DI---ADNQKNYELLLEGPIESLITNIVDGLEYAIFDKSETL-QGSFIKVT- 328 (395) T ss_pred HHHHHHHHHHHHHHHHhCCCHHHhcC--Cc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhc-Ccceeeeh- Confidence 23222 33456699999999999962 22 2333334456553 66667778888888876433221 11234442 Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCc Q lcl|Aclame:pro 404 SNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSP 483 (533) Q Consensus 404 dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (533) .+.... +.+|.+++..+- +..-||..++- +.++..++..+ ..|+=.. .+-..| T Consensus 329 -----~l~~~d-~~~~~~~~~~~~----------~~G~~T~NE~R-----~~~g~~Pi~~~-~gD~~~~-----~~n~~~ 381 (395) T protein:vir:98 329 -----GLKNYD-LFSISNQADKLI----------SSGFVFIDEVR-----EEIGLPELPDG-LGKVLYM-----TKNYES 381 (395) T ss_pred -----hhhccC-HHHHHHHHHHHH----------hCCCcCHHHHH-----HHhCCCCCCCC-CCceeee-----ccccee Confidence 233333 345666665431 22235643321 11222111111 1111101 111111 Q ss_pred ccccCCCcccccCCCCCccCCCccCcCcccCCchhhc Q lcl|Aclame:pro 484 IESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEET 520 (533) Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (533) ++ +-|||-|- +.+| T Consensus 382 ~~----------------~~gge~~~-------~~~~ 395 (395) T protein:vir:98 382 VL----------------ERGGEVDE-------EVET 395 (395) T ss_pred cc----------------cccCCCCC-------CCCC Confidence 11 12332110 0011 No 204 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=96.42 E-value=0.00064 Score=38.08 Aligned_cols=420 Identities=14% Similarity=0.042 Sum_probs=171.4 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCc------ccCCCC-cccCCCCCccccchhhcccccCccccchHHHHHHHHHH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAP------HGAGGS-SMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRM 73 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p------~~~~ga-s~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m 73 (533) +.+++.+...+-..+..-+. +....-.| +-..|. +.|-. ..... . .+.. + +++ T Consensus 31 ~~~~~~~~~~~~~~i~~~i~-~h~~~~~~rl~~l~~yY~g~~~~i~~---~~~~~----~---~~~~-~--------~ki 90 (502) T protein:vir:48 31 ADNLEELMVNNWELLKNFIN-HHKLRQAPRIQELLDYARGENHDVLK---SGRRK----D---NEMA-D--------KRA 90 (502) T ss_pred ccchhhhccccHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccccc---ccccc----c---cccc-c--------cee Confidence 33333332222111111100 00000000 012221 11100 00000 0 0000 0 122 Q ss_pred hhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHH---HHHHhhhHHHHHHHHHHHhhcCceeEEEeecCC Q lcl|Aclame:pro 74 DYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSY---LDYVINIEKNAYPIIRNMIKYGDMFLHILEKGS 150 (533) Q Consensus 74 ~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~---i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~ 150 (533) .++-+.-+++..+...+ +.|+.+...+.+-.+.+.+. |.+.-+|+....+.++.+++.|+.|++...|. T Consensus 91 --~~n~~k~Ivd~~~~yl~-----g~p~~~~~~d~~~~~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~de- 162 (502) T protein:vir:48 91 --VHNYGRMISKFKTGYLA-----GNPIRVEYDDNEDNSQNDDAIKRIGRINDIDTHNRNLIRDLSQTGRAYEVIYRSE- 162 (502) T ss_pred --ecchHHHHHHHHhhhhc-----ccCeeEecCCccchhHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCC- Confidence 25677888888886655 66677766554444444443 44445799999999999999999999887763 Q ss_pred CCCeeeeEEcCcceeeEEeeccCc--EEEE-----------------EecccceecccCCcc--------cccCcccEEE Q lcl|Aclame:pro 151 DGTIEKFQVVSPYIFSKRYNPETD--TWYY-----------------VITDVYRNVVSGYFN--------EDIPEEDVIH 203 (533) Q Consensus 151 k~gI~elr~ldP~~ik~v~d~~g~--~e~y-----------------~y~~~~~~~~~~~~~--------~~~~~~dvi~ 203 (533) +|-..++.+||+.+-++++.... ..++ +|+....+......+ +.+..=.++. T Consensus 163 -dg~~~i~~~~p~~~~~vydd~~~~~~~~~ir~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~ 241 (502) T protein:vir:48 163 -YDETRIKRLSPLETFVIYDNSLEDNSIAAVRYYNRGTLQNAKDVVEIYTNQHIYTLDASDSFNEISVTPHAFGTVPITE 241 (502) T ss_pred -CCceEEEEEcccceEEEEcCCCCCceEEEEEEEEEeecCCcEEEEEEEeCCeEEEEEeCCceeeccceecCCCccceEE Confidence 45557999999999999876432 1111 122221111100000 1111112333 Q ss_pred EecCcccCcccccchhHHHHHHHHHHHHHHHH-HHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeecc Q lcl|Aclame:pro 204 FSHKIDTNFFPYGRSYLESARAIWNQLRLMED-ALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRN 282 (533) Q Consensus 204 ~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed-alVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~ 282 (533) |.. .+.|+|-++.++....-+-.+-- ....-+-.+.|-+-+.-.. ..+...-. ..+.+. ++++= T Consensus 242 ~~n------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~--~~~~~~~~----~~~~~~--~~~~~- 306 (502) T protein:vir:48 242 FLN------NADGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDL--ALPQGMQA----SDMKRT--RLMQL- 306 (502) T ss_pred ecC------CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCc--ccccccch----hhhhhc--ceeec- Confidence 321 13566666654444332222211 1111222222222111110 11100000 000000 00000 Q ss_pred CCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC-CCCChHH-HHHHHHHHHHHhcCCCeeeccCCCCccchhhh Q lcl|Aclame:pro 283 NQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG-SKVDLAE-DVEYMLNRLISALKVPKAFIGYEGDVNAKNTL 360 (533) Q Consensus 283 ~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG-~nlg~i~-Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI 360 (533) .+ +...-..+.+..+.+|-. .+...+. -++-+.+.+|+.-++|-.-++.. .|+.|.. T Consensus 307 ------------------~~-~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~--~~n~Sg~ 365 (502) T protein:vir:48 307 ------------------KP-PKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNKDIHVFTNTPDMSDNHF--SGNASGE 365 (502) T ss_pred ------------------cc-cccccccccCcceeEeeecCCHHHHHHHHHHHHHHHHHHhCCCCcCcccc--ccCchHH Confidence 00 000001122334444432 1333332 26778888999999995433221 1333333 Q ss_pred hH--HHHHHHHHHHHHHHHHHHHHhhhh--h-----hccCCCccce---eEEecCCcHHHHHHHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 361 AT--QDIKFNNTIKRIQGFFVEELERMV--R-----MNKEFADQDF---RLVMNRSNSIVEGERFAVIEQRIGIAERLKG 428 (533) Q Consensus 361 ~r--de~kF~kfI~rLr~~F~~~l~~qL--i-----lk~i~t~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~p 428 (533) +. .......-+.+.++.|...|++-+ | .++.....+| ++.|.+...-.+.. .++++.++.. T Consensus 366 Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~e-------~a~~~~kl~g 438 (502) T protein:vir:48 366 ALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESRLKITFTPNLPKSLYE-------QVSILNDLGG 438 (502) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCCCCCcCHHH-------HHHHHHHHhc Confidence 32 222233445556666776665543 2 1233333344 57786443322333 3345555566 Q ss_pred hhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCccC Q lcl|Aclame:pro 429 WVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELN 508 (533) Q Consensus 429 yvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (533) .+++.++++.+-..+| -.++-+.|++|..+... +..+.......++ |+++.+ T Consensus 439 ~iS~et~l~~l~~v~D-~~~E~~ri~~E~~~~~~-------~~~~~~~~~~~~~-------------~~d~~~------- 490 (502) T protein:vir:48 439 QVSQETALSLSGLVEN-PTEELDKINEESSKIDF-------KGYPSYFYDNVGK-------------YTDEVK------- 490 (502) T ss_pred cCcHHHHHHhCCCCCC-HHHHHHHHHHHHHhhhh-------hcccccccccccc-------------cCCCcc------- Confidence 7999999988655554 33444556555332111 0001000001111 000000 Q ss_pred cCcccCCchhhcCCcccCCCCCC Q lcl|Aclame:pro 509 LGGAFEEFEEETGGGEEELPFPE 531 (533) Q Consensus 509 ~~~~~~~~~~~~g~~~~~~~~~~ 531 (533) + +...+.-+.|| T Consensus 491 -----e------~~~~~~~~~~~ 502 (502) T protein:vir:48 491 -----E------THTDDFERVYE 502 (502) T ss_pred -----C------CCCcCcCCCCC Confidence 0 00000011122 No 205 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=96.34 E-value=0.00072 Score=37.81 Aligned_cols=403 Identities=10% Similarity=0.040 Sum_probs=157.8 Q ss_pred HHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCc-cccchHHHH-----------HHHHHHhhc---- Q lcl|Aclame:pro 13 AVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGG-IEFNRFFLY-----------DMYDRMDYT---- 76 (533) Q Consensus 13 ~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg-~~~n~~~li-----------~~YR~m~~~---- 76 (533) +. +.+|.++.-.--+ .+| ..+.+ ..+.++-.....|+.. ......++| .+|..+... T Consensus 1 ~~-~~~~~~~~~~~~~---~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~ 73 (492) T protein:vir:97 1 MQ-FIQLISQVAQALI---KGG-NILYP--SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQR 73 (492) T ss_pred Ch-HHHHHHHHHHHHh---cCC-ceeec--cchhhhhHhhhcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc Confidence 11 2223332221111 122 22221 1122222222222221 111122221 222222111 Q ss_pred --------------------------ChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh--hhHHHH Q lcl|Aclame:pro 77 --------------------------DPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI--NIEKNA 128 (533) Q Consensus 77 --------------------------~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll--~f~~~~ 128 (533) ++-+.-+|+..+...+ +.|+.+..++.+.. +.+...+ +|+.+. T Consensus 74 ~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~-----g~p~~~~~~d~~~~----~~l~~~~~n~~~~~~ 144 (492) T protein:vir:97 74 PDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIV-----GKPIAFKHTDDEVV----KRIDEVLGNRFDDKL 144 (492) T ss_pred CccccccccccccccccccccccccccchHHHHHHHHhhhhc-----ccCceeccCchHHH----HHHHHHHhccHHHHH Confidence 1122222222222111 45566665553322 2233333 688999 Q ss_pred HHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcceeeEEeecc--CcEEEEE-------------ecccc--eecccCC Q lcl|Aclame:pro 129 YPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPE--TDTWYYV-------------ITDVY--RNVVSGY 191 (533) Q Consensus 129 ~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~--g~~e~y~-------------y~~~~--~~~~~~~ 191 (533) .+.++.+++.|+.|.+...| ++|-..++.++|+.+-++++.. ++..+++ |+... .+...++ T Consensus 145 ~~~~~~~~~~G~a~~~v~~d--~dg~~~~~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~~~~~y~~~~v~~~~~~~~ 222 (492) T protein:vir:97 145 HSVLTGASNKGIEWLHPYLD--EEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENG 222 (492) T ss_pred HHHHHHHhhcCeEEEEEEec--CCCceEEEEEcccceEEEEcCCCCCceEEEEEEEeeccceeEEEEecCeEEEEEEecC Confidence 99999999999999988775 3455679999999999998743 2221211 11110 0100000 Q ss_pred c-----------------ccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHH-HHHHHHHHHhccccceeeec Q lcl|Aclame:pro 192 F-----------------NEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLM-EDALMLYRVVRSVDRRVFYV 253 (533) Q Consensus 192 ~-----------------~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~-EdalVIyRi~RAPeRr~fyi 253 (533) . .+.+..=.++.|.- ...|.|-++..+....-+-.+ =+....-+-..-| +..+ T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~---~l~~ 293 (492) T protein:vir:97 223 SLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN------NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNEL---TYVL 293 (492) T ss_pred eeeecccccccccccccccCCCCCcceEEecC------CCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhccc---eeee Confidence 0 00000001222221 134666666544433333221 1111111222222 2222 Q ss_pred CCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC-CCCCh-HHHHH Q lcl|Aclame:pro 254 DVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG-SKVDL-AEDVE 331 (533) Q Consensus 254 dvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG-~nlg~-i~Dv~ 331 (533) .... .....+.... + ..++...-+++ ..+++|-. .+... ..-+. T Consensus 294 ~g~~--~~~~~~~~~~-~-----------------------------~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~ 339 (492) T protein:vir:97 294 KNYD--DQELPEFKRL-L-----------------------------RYYGAIKVSDN--GGVDTIQVEVPVENSKKYLD 339 (492) T ss_pred ecCC--cccchhHHHH-H-----------------------------hhccceecCCC--CcceeEeccCCHHHHHHHHH Confidence 1111 1111111111 1 11111111111 12334422 13322 23367 Q ss_pred HHHHHHHHhcCCCeeeccCCCCc-cchhhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--hhccCCCccce---eEEecC Q lcl|Aclame:pro 332 YMLNRLISALKVPKAFIGYEGDV-NAKNTLAT--QDIKFNNTIKRIQGFFVEELERMV--RMNKEFADQDF---RLVMNR 403 (533) Q Consensus 332 Yf~~kLy~aL~VP~srl~~~~~~-gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--ilk~i~t~eew---~~~f~~ 403 (533) -+++.+++-.++|---. +.| |..|..+. -+.....-+.+.++.|...|++-+ |++-.--..+| ++.|.+ T Consensus 340 ~L~~~I~~~s~~p~~~~---~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~i~v~f~~ 416 (492) T protein:vir:97 340 ELYQKIMLFGQAVDFSS---DKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNY 416 (492) T ss_pred HHHHHHHHHhCCCCCCc---cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeEEecC Confidence 77888999999985322 222 33333332 222334455666666776655543 32221112233 566653 Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCc Q lcl|Aclame:pro 404 SNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSP 483 (533) Q Consensus 404 dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (533) ..--.+. +.++++.++.+.++++++.+.+-..+| -.++-++|++|..+.....+. .. . T Consensus 417 ~~p~~~~-------e~a~~~~kl~G~iS~et~l~~l~~v~d-~~~Eleri~~E~~~~~~~~~~----------~~---~- 474 (492) T protein:vir:97 417 NKVANTE-------LQVQTAQQSMGIVSHETVLENHPFVED-LQAELERIEQEQTEYNKQLPN----------LD---D- 474 (492) T ss_pred CCCCCHH-------HHHHHHHHHhccCchHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHhhhc----------cc---c- Confidence 3332222 234556666678999999987766665 222334455543311000000 00 0 Q ss_pred ccccCCCcccccCCCCCc Q lcl|Aclame:pro 484 IESPRGRTEFDFGTEGGE 501 (533) Q Consensus 484 ~~~~~~~~~~~~~~~~~~ 501 (533) .....+++..+.+..-.+ T Consensus 475 ~~~~~~~~~~~~~~~~~e 492 (492) T protein:vir:97 475 GGADSAQQQERSNNKESE 492 (492) T ss_pred CCCCCCcccccccccccC Confidence 001111111111110000 No 206 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=96.34 E-value=0.00072 Score=37.80 Aligned_cols=413 Identities=13% Similarity=0.099 Sum_probs=170.9 Q ss_pred ccCccc---CCCCcccCCCCCc--cccchhhcccccCccc--cchHHHHHHH------------------HHHh--hcCh Q lcl|Aclame:pro 26 MGAPHG---AGGSSMIPINMYH--PFATAGYASRFYGGIE--FNRFFLYDMY------------------DRMD--YTDP 78 (533) Q Consensus 26 ~~~p~~---~~gas~i~~~~~~--~~~~~~~~~~~ygg~~--~n~~~li~~Y------------------R~m~--~~~P 78 (533) ++.|-+ ...|-.|+.-... +-.........+.... ..+-+.+.+| +... ..+. T Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~~~~~~~~~rl~~l~~YY~G~~~~~~~~~~~~~~~~~~~~~~v~n 80 (501) T protein:vir:25 1 MTVPVDVIADAPAADVEFPEDSMSREQLGALVADMWRLHISERQWLDRIYEYTKGLRGRPEVPEGASDEVKELAKLSVKN 80 (501) T ss_pred CcccchhhhccCcccccCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhccccCChhhhhhHhhhhcC Confidence 443332 2222233221111 1000000000000000 0011111111 1110 0112 Q ss_pred hHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeE Q lcl|Aclame:pro 79 LISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQ 158 (533) Q Consensus 79 EV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr 158 (533) -+.-+|+..++-+. . ..+...+.+- .+....+...-+|+...++.++..+++|+.|.....+.. | ..++ T Consensus 81 ~~~~ivd~~a~~l~---~----~gf~~~d~~~-~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~de~--~-~~i~ 149 (501) T protein:vir:25 81 VLSLVRDSFAQNLS---V----VGYRNALAKE-NDPAWEMWQRNRMDARQAEVHRPALTYGASYVTVTPTDE--G-PVFR 149 (501) T ss_pred hHHHHHHHHHhhhc---c----cceecCCccc-hHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCC--C-CeEE Confidence 33334444333222 1 1222323222 222344555557899999999999999999988766532 3 2477 Q ss_pred EcCcceeeEEe-eccCcE------EEE-------------Eecccceec-----------ccCCc--------------- Q lcl|Aclame:pro 159 VVSPYIFSKRY-NPETDT------WYY-------------VITDVYRNV-----------VSGYF--------------- 192 (533) Q Consensus 159 ~ldP~~ik~v~-d~~g~~------e~y-------------~y~~~~~~~-----------~~~~~--------------- 192 (533) .++|+.+..++ |..++. .+| +|++...+. ..+.. T Consensus 150 ~~sp~~~~~iy~D~~~~~~~~~ai~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (501) T protein:vir:25 150 TRSPRQILAVYADPSVDAWPQYALETWVAQKDAKPHRRGVLYDDTYMYELDLGEVVLGDAGGGQATQQPVNVREVTDVIE 229 (501) T ss_pred EeccccEEEEEecCCCCcceeEEEEEEeeccccCcceeEEEecCeeEEEEecCceeeeeccccccccccccccccccccc Confidence 78999887665 434331 111 111111100 00000 Q ss_pred ----ccccCcccEEEEecCcccCcccccchhHHHHHHHHHHH-HHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHH Q lcl|Aclame:pro 193 ----NEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQL-RLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYL 267 (533) Q Consensus 193 ----~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqL-rm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~ 267 (533) .+.+..=-+++|...-.. .++|.|-++..+...+-+ +++-+.+++-...-.|.|-+.=.+..+.+.. T Consensus 230 ~~~~~~~~~~vPiv~f~N~~~~--~~~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i~G~~~~~~~~~------ 301 (501) T protein:vir:25 230 HGATFEGKPVCPVVRFVNGRDA--DDMIVGEVAPLILLQQAINSVNFDRLIVSRFGANPQRVISGWTGSKAEVL------ 301 (501) T ss_pred cccccCCccceeeEeccCcccc--CccccchhhhhHHHHHHHHHHHHHHHHHHHhhccHHHHHhCCCCCccchh------ Confidence 000111124444332211 135666555443222222 2333444554544445444432221111100 Q ss_pred HHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCC-hHHHHHHHHHHHHHhcCCCee Q lcl|Aclame:pro 268 TNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVD-LAEDVEYMLNRLISALKVPKA 346 (533) Q Consensus 268 ~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg-~i~Dv~Yf~~kLy~aL~VP~s 346 (533) ....| ..|+. +| .++.|-+++++++. -++-++-+-..+...-++|.. T Consensus 302 -------------~~~~~----------------~i~~~--~~-~~~~~~q~~~~~~~~~~~~l~~~i~~i~~~s~~P~~ 349 (501) T protein:vir:25 302 -------------KASAL----------------RVWTF--ED-PEVKAQAFPPASVEPYNLILEEMLQHVAMVAQISPA 349 (501) T ss_pred -------------hhccc----------------ceecc--CC-CCceEEEecccChHHHHHHHHHHHHHHHhhcCCChh Confidence 00011 12332 12 23567778877664 334466666677777889988 Q ss_pred eccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh----hhhccCCCccce---eEEecCCcHHHHHHHHHHHHHH Q lcl|Aclame:pro 347 FIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERM----VRMNKEFADQDF---RLVMNRSNSIVEGERFAVIEQR 419 (533) Q Consensus 347 rl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~q----Lilk~i~t~eew---~~~f~~dn~f~E~ke~ei~~~R 419 (533) -++...+=.-+..|.-.+....+-+.+.|+.|..-|++- +-++|.....+| .+.|.....= -+.+. T Consensus 350 ~~~~~~~N~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~rl~~~~~~~~~~~~~~~i~v~w~~~~~~-------s~~~~ 422 (501) T protein:vir:25 350 QVTGKMINVSAEALAAAEANQQRKLAAKRESFGESWEQLLRLAAEMDDDPDTAADSGAEVLWRDTEAR-------SFGAV 422 (501) T ss_pred hhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccceeeeEEecCCCCC-------CHHHH Confidence 777322111122333344446667777777787655543 334554333233 4666443321 22445 Q ss_pred HHHHHHhhhh-hhHHHHHHHHhcCChhhhHHHHH-HhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCC Q lcl|Aclame:pro 420 IGIAERLKGW-VREDWIYSNILQIPYDLKPQEEV-AEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGT 497 (533) Q Consensus 420 ~~~~~~~~py-vgk~~i~k~il~~tde~~~q~~~-i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (533) .+++.++..- |+..++...++.+|+++++..+. .+++...+.. ..-.+...+|...+.+.++.+..+ T Consensus 423 ada~~kl~~~gis~et~~~~~~g~~~~~ie~~~~~~~e~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 491 (501) T protein:vir:25 423 VDGITKLASAGIPIEHLLSMVPGMTQQTIQAIKDSLRGGEVKSLV-----------DKLLSNEPAPVPPPPPQAAAQALN 491 (501) T ss_pred HHHHHHHHhcCCCHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHH-----------HHhhccCcCCCCCCCCCCCccccc Confidence 5555555443 78899999999999866543222 2222211111 001112222222222222211111 Q ss_pred CCCccCCCccCcCcccCCchhhcCCc Q lcl|Aclame:pro 498 EGGEELGGELNLGGAFEEFEEETGGG 523 (533) Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~g~~ 523 (533) ++ |. .-+||+ T Consensus 492 ~~-----~~-----------~~~~g~ 501 (501) T protein:vir:25 492 EG-----GV-----------NGNGGA 501 (501) T ss_pred cc-----cC-----------CCCCCC Confidence 11 10 011222 No 207 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=96.23 E-value=0.00085 Score=37.42 Aligned_cols=387 Identities=10% Similarity=0.013 Sum_probs=159.2 Q ss_pred ccCcccCCCCcccCCCCCccccchhhcccccCccc--cchHH------HHHHHH---HHhhcChhHHHHHHHhhceeeec Q lcl|Aclame:pro 26 MGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIE--FNRFF------LYDMYD---RMDYTDPLISTVLDIIADECTIP 94 (533) Q Consensus 26 ~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~--~n~~~------li~~YR---~m~~~~PEV~~AId~Ivneaiv~ 94 (533) ..+..-. ..|..... -.....-...+|-|.. .+++. -...++ ++ .++-+.-.|+..+...+ T Consensus 1 l~~~~i~---~~i~~~~~-~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki--~~n~~~~Ivd~~~~yl~-- 72 (451) T protein:vir:10 1 MELEKIR---AIISADAA-RRQEILQAKSYYYNKNDILKKGVVVQNRDENPLRNADNRI--SHNFHEILVDEKASYMF-- 72 (451) T ss_pred CCHHHHH---HHHHHHHH-HHHHHHHHHHHhcccCcccccccccccccccccccccccc--ccchHHHHHHhhhhhee-- Confidence 0000000 00000000 0000000111222210 00000 000000 01 02333333343333222 Q ss_pred CCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCC------CCCeeeeEEcCcceeeEE Q lcl|Aclame:pro 95 NENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGS------DGTIEKFQVVSPYIFSKR 168 (533) Q Consensus 95 d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~------k~gI~elr~ldP~~ik~v 168 (533) +.|+.+..++.+-..+..+.+.. =+|+.+..++.+.+++.|+.|.+..+|.. ..|-..+..++|+.+-++ T Consensus 73 ---G~p~~~~~~~~~~~~~~~~~~~~-n~~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~~~~~~~i~p~~~~~v 148 (451) T protein:vir:10 73 ---TYPVLFDIDNNKELNEKVTDVLG-NEFTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQTFKYGVVNTEEIIPI 148 (451) T ss_pred ---cccceeecCCcHHHHHHHHHHhc-cCHHHHHHHHHHHHhhcCeEEEEEeecCCcccccccccceeEEEEcccceEEE Confidence 55666665553333333333332 37899999999999999999999887632 135567899999999888 Q ss_pred eeccC--cEEEEE-----------------------ecccce--ec--ccCCcc---------cccCcccEEEEecCccc Q lcl|Aclame:pro 169 YNPET--DTWYYV-----------------------ITDVYR--NV--VSGYFN---------EDIPEEDVIHFSHKIDT 210 (533) Q Consensus 169 ~d~~g--~~e~y~-----------------------y~~~~~--~~--~~~~~~---------~~~~~~dvi~~~~~~~~ 210 (533) ++... +..+++ |+.... +. +.+... +.+..=.++.|.- T Consensus 149 ydd~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n---- 224 (451) T protein:vir:10 149 YRNGIERELEAVIRYYIQLEDVKGQIQKQAYTYVEFWTDKILDKYKFFGVSCCGSQIEHITVQHRFNSVPFVEFSN---- 224 (451) T ss_pred EcCCCCCceEEEEEEEEeeecccccccceEEEEEEEEeCCeEEEEEecccCccccccccccccCCCCeeeEEEecc---- Confidence 86543 222221 221111 00 000000 0011011222221 Q ss_pred CcccccchhHHHHHHHHHHHHHHHH-HHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeec Q lcl|Aclame:pro 211 NFFPYGRSYLESARAIWNQLRLMED-ALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLG 289 (533) Q Consensus 211 d~~~~g~s~L~~Aik~~NqLrm~Ed-alVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d 289 (533) ...|.|-++..+.....+-++-- ..-.-+-+.-|-. ++.... .....+.+.. +.+++--.+... T Consensus 225 --n~~~~~d~e~v~~liDa~~~~~S~~~~~~~~~~~~~l---~~~g~~--~~~~~~~~~~-~~~~~~i~~~~~------- 289 (451) T protein:vir:10 225 --NIKKQSDLSKYKKILDLYDRVMSGFANDLEDIQQIIY---ILENFG--GEDTSEFLKE-LKRYKTIKTETD------- 289 (451) T ss_pred --CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccee---eeecCC--cccchhhHHH-HhhCCeEEecCc------- Confidence 13456666665554444432221 1112232322322 222111 1111122221 111111111111 Q ss_pred ccccchhhhHHhhhhcccccCCCcceeeecCC-CCCChHH-HHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHH--H Q lcl|Aclame:pro 290 IDNYFSIESILKDYFIPRRGDRRAVEIDILQG-SKVDLAE-DVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQD--I 365 (533) Q Consensus 290 ~~~~~n~~smleDywlprR~g~~gtEi~TLpG-~nlg~i~-Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde--~ 365 (533) +.+.|-.++.|-- .+..... -++-+.+.+|+..++|- +. +.+||+.|.++..- . T Consensus 290 -------------------~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~--~~-~~~~gn~Sg~Alk~~~~ 347 (451) T protein:vir:10 290 -------------------SEGDSGGLKTMQIEIPTEARKIILEILKKQIYESGQGLQ--QD-TENFGNASGVALKFFYR 347 (451) T ss_pred -------------------CCccCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCccc--cc-ccccccccHHHHHHHHH Confidence 1111223344422 2444343 38889999999999995 22 33466655555422 2 Q ss_pred HHHHHHHHHHHHHHHHHhhhh--hh--ccCCCccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhc Q lcl|Aclame:pro 366 KFNNTIKRIQGFFVEELERMV--RM--NKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQ 441 (533) Q Consensus 366 kF~kfI~rLr~~F~~~l~~qL--il--k~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~ 441 (533) ....-+.+.++.|...|++-+ |+ -|+....+.++.|.+.---.+.. .++++..+...+|++++.+.+-. T Consensus 348 ~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~d~~~i~i~f~~~~p~n~~e-------~~~~~~kl~g~iS~et~~~~~p~ 420 (451) T protein:vir:10 348 KLELKSGLLETEFRTSFDKLIKAILYFLGVTDYKKIQQTYTRNMMSNDLE-------DADIATKSVGIIPTKIILRHHPW 420 (451) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeEEecCCCCCCHHH-------HHHHHHHHhccCchHHHHHhCCC Confidence 233345666666777665543 22 23333445567776443322222 34455555678999999988776 Q ss_pred CChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCC Q lcl|Aclame:pro 442 IPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGS 482 (533) Q Consensus 442 ~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (533) .+|-+ +..+.+++|...... ...+..+...+ T Consensus 421 v~d~~-~e~~~~~ee~~~~~~---------~~~~~~~~~~~ 451 (451) T protein:vir:10 421 VDDVE-EAEKLYLEEKKIQAS---------KVSDDYNNFTE 451 (451) T ss_pred CCCHH-HHHHHHHHHHHHHHH---------HHHhhcCCCCC Confidence 66511 111222222110000 00001111111 No 208 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=96.17 E-value=0.00092 Score=37.23 Aligned_cols=416 Identities=12% Similarity=0.109 Sum_probs=181.6 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccc-hhhcccccCccccch-------HHHHHHHHHHhh Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFAT-AGYASRFYGGIEFNR-------FFLYDMYDRMDY 75 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~-~~~~~~~ygg~~~n~-------~~li~~YR~m~~ 75 (533) |..|++.-.- .......+++.+..+.-+.. .|.++ ..... .-....+|.|..... ....+.+..+ T Consensus 1 m~~~~~~k~~--~~~~~~~~~~~~~~~~~~~~-~i~~~--~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~sl-- 73 (500) T protein:vir:30 1 MGVIQKIKNL--VTRSKYVMTTQSLTNITDHP-KIAIS--KLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHL-- 73 (500) T ss_pred CchHHHHHHH--HHHHHHHhhcchhhhhhccc-cccCC--HHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeec-- Confidence 3333333221 11222334444433322221 11111 10000 111122333321100 0001111111 Q ss_pred cChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCee Q lcl|Aclame:pro 76 TDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIE 155 (533) Q Consensus 76 ~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~ 155 (533) +-...++++.++-+. + .+.++..++ +..++..+.+++--+|...+.+.+...+.-|..+|+..+|. +.| T Consensus 74 --nl~~~i~~~~A~lv~----~-e~~~i~~~d-~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~--~~~- 142 (500) T protein:vir:30 74 --PIARTAAKKIASLVF----N-EQAEIKVDD-DAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDG--DKV- 142 (500) T ss_pred --chHHHHHHHHhhhhc----C-CcceEecCC-hHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeC--Cce- Confidence 233455555555433 2 233444443 22222333444444799999999999999999999998874 334 Q ss_pred eeEEcCcceeeEEeec-cCcE----------------------EEEEecccc---e----ecc--cC--Cccc------- Q lcl|Aclame:pro 156 KFQVVSPYIFSKRYNP-ETDT----------------------WYYVITDVY---R----NVV--SG--YFNE------- 194 (533) Q Consensus 156 elr~ldP~~ik~v~d~-~g~~----------------------e~y~y~~~~---~----~~~--~~--~~~~------- 194 (533) .+.+++|.++-+++.. .+.. |++.++.+. + +-+ +. +... T Consensus 143 ~I~~v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~ 222 (500) T protein:vir:30 143 RVAFVQAPVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYK 222 (500) T ss_pred EEEEEcCCeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccC Confidence 4888999988775332 2211 122111110 0 100 00 1110 Q ss_pred ccCcc---------cEEEEec---CcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhh Q lcl|Aclame:pro 195 DIPEE---------DVIHFSH---KIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDK 262 (533) Q Consensus 195 ~~~~~---------dvi~~~~---~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~k 262 (533) .+.++ -+++|.. +..+...|+|+|-+++|+.....|-..-+.++ |..|.=.+|+|..+ . T Consensus 223 ~l~~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~--~e~~~g~~~i~v~~-~------ 293 (500) T protein:vir:30 223 DLKDEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFM--WEVKMGQRRVAVPE-S------ 293 (500) T ss_pred CcCcceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHH--HHHHhCcceeeech-H------ Confidence 01111 2333322 22232347899999998887777776666554 67777666666521 0 Q ss_pred HHHHHHHHHHHhhhceeeccCCCeeec------ccccchhhhHHhhhhcccccCCCcceeeecCCC-CCCh-HHHHHHHH Q lcl|Aclame:pro 263 INEYLTNIAMQYKRDYWVRNNQNQFLG------IDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDL-AEDVEYML 334 (533) Q Consensus 263 Aeqy~~~im~~~knk~vyd~~tGei~d------~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~-i~Dv~Yf~ 334 (533) +++. ..+..+|+... +++. +..| +--+++ +..|+.+... --++ ..-+.++. T Consensus 294 ---~l~~---------~~~~~~g~~~~~~~~d~~~~~--~~~~------~~~~~~-~~~i~~~~~~ir~e~~~~~l~~~l 352 (500) T protein:vir:30 294 ---LTAL---------TVRTTDGDVVPRPRFESDQNV--YIRM------GGRDLD-SSAIQDLTTPIRADDYIKAINEGL 352 (500) T ss_pred ---Hhcc---------cCCCCCccccCCcccCCCcce--EEEc------CCCCCc-CcceeEeccccChHHHHHHHHHHH Confidence 0000 01111111100 0010 0000 000011 1234444322 1122 23377888 Q ss_pred HHHHHhcCCCeeeccCCCCc-cchhhhhHHHHHHHHHHHHHHHHHHHHHh----hhhh------hccCCCcc--ceeEEe Q lcl|Aclame:pro 335 NRLISALKVPKAFIGYEGDV-NAKNTLATQDIKFNNTIKRIQGFFVEELE----RMVR------MNKEFADQ--DFRLVM 401 (533) Q Consensus 335 ~kLy~aL~VP~srl~~~~~~-gr~~eI~rde~kF~kfI~rLr~~F~~~l~----~qLi------lk~i~t~e--ew~~~f 401 (533) +.+=.+.|++.+.|+.+++. .-+++|.-.+..-..-+.+.|+.|...|+ .-|- +.+...+. +..++| T Consensus 353 ~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f 432 (500) T protein:vir:30 353 SLFEMQIGVSAGLFSFDGKSMKTATEIVSENSDTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISL 432 (500) T ss_pred HHHHHHhCCCccccccCcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEe Confidence 88888999999999976553 23566654444444455555555544333 2221 11222223 334555 Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHhcCChhhhHH-HHHHhhhcccCCCCCcccccccchhhhcCc Q lcl|Aclame:pro 402 NRSNSIVEGERFAVIEQRIGIAERLKGWVRED-WIYSNILQIPYDLKPQ-EEVAEAAGGGGLFDTGGFGEETTPADFLGE 479 (533) Q Consensus 402 ~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~-~i~k~il~~tde~~~q-~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~ 479 (533) . ....+-+++++ +..+++.+. ..+++. |||+. ..+++|+.++ -+.|++|..... +.++.+..+ .|+ T Consensus 433 ~--d~i~~d~~~~~-~~~~~~v~a--Gi~s~~~~i~~~-~g~~eeea~~~l~~i~~E~~~~~---~~~~~~~~~---~g~ 500 (500) T protein:vir:30 433 D--DGVFTDRDAEL-DYWIKVVNA--GFGTREMAIQKV-LNVTEEKAQEIAAEINTGIVDEI---NQQRTDTHL---YGE 500 (500) T ss_pred C--CCCCCCHHHHH-HHHHHHHHc--CCCCHHHHHHhc-CCCCHHHHHHHHHHHHHhccccC---CCCCccccc---cCC Confidence 3 33222233222 222233332 456764 56654 5789876544 466766642111 111111111 222 No 209 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=96.17 E-value=0.00092 Score=37.23 Aligned_cols=416 Identities=12% Similarity=0.109 Sum_probs=181.6 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccc-hhhcccccCccccch-------HHHHHHHHHHhh Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFAT-AGYASRFYGGIEFNR-------FFLYDMYDRMDY 75 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~-~~~~~~~ygg~~~n~-------~~li~~YR~m~~ 75 (533) |..|++.-.- .......+++.+..+.-+.. .|.++ ..... .-....+|.|..... ....+.+..+ T Consensus 1 m~~~~~~k~~--~~~~~~~~~~~~~~~~~~~~-~i~~~--~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~sl-- 73 (500) T protein:vir:98 1 MGVIQKIKNL--VTRSKYVMTTQSLTNITDHP-KIAIS--KLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHL-- 73 (500) T ss_pred CchHHHHHHH--HHHHHHHhhcchhhhhhccc-cccCC--HHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeec-- Confidence 3333333221 11222334444433322221 11111 10000 111122333321100 0001111111 Q ss_pred cChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCee Q lcl|Aclame:pro 76 TDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIE 155 (533) Q Consensus 76 ~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~ 155 (533) +-...++++.++-+. + .+.++..++ +..++..+.+++--+|...+.+.+...+.-|..+|+..+|. +.| T Consensus 74 --nl~~~i~~~~A~lv~----~-e~~~i~~~d-~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~--~~~- 142 (500) T protein:vir:98 74 --PIARTAAKKIASLVF----N-EQAEIKVDD-DAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDG--DKV- 142 (500) T ss_pred --chHHHHHHHHhhhhc----C-CcceEecCC-hHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeC--Cce- Confidence 233455555555433 2 233444443 22222333444444799999999999999999999998874 334 Q ss_pred eeEEcCcceeeEEeec-cCcE----------------------EEEEecccc---e----ecc--cC--Cccc------- Q lcl|Aclame:pro 156 KFQVVSPYIFSKRYNP-ETDT----------------------WYYVITDVY---R----NVV--SG--YFNE------- 194 (533) Q Consensus 156 elr~ldP~~ik~v~d~-~g~~----------------------e~y~y~~~~---~----~~~--~~--~~~~------- 194 (533) .+.+++|.++-+++.. .+.. |++.++.+. + +-+ +. +... T Consensus 143 ~I~~v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~ 222 (500) T protein:vir:98 143 RVAFVQAPVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYK 222 (500) T ss_pred EEEEEcCCeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccC Confidence 4888999988775332 2211 122111110 0 100 00 1110 Q ss_pred ccCcc---------cEEEEec---CcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCCCCchhh Q lcl|Aclame:pro 195 DIPEE---------DVIHFSH---KIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDK 262 (533) Q Consensus 195 ~~~~~---------dvi~~~~---~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvGnlp~~k 262 (533) .+.++ -+++|.. +..+...|+|+|-+++|+.....|-..-+.++ |..|.=.+|+|..+ . T Consensus 223 ~l~~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~--~e~~~g~~~i~v~~-~------ 293 (500) T protein:vir:98 223 DLKDEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFM--WEVKMGQRRVAVPE-S------ 293 (500) T ss_pred CcCcceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHH--HHHHhCcceeeech-H------ Confidence 01111 2333322 22232347899999998887777776666554 67777666666521 0 Q ss_pred HHHHHHHHHHHhhhceeeccCCCeeec------ccccchhhhHHhhhhcccccCCCcceeeecCCC-CCCh-HHHHHHHH Q lcl|Aclame:pro 263 INEYLTNIAMQYKRDYWVRNNQNQFLG------IDNYFSIESILKDYFIPRRGDRRAVEIDILQGS-KVDL-AEDVEYML 334 (533) Q Consensus 263 Aeqy~~~im~~~knk~vyd~~tGei~d------~~~~~n~~smleDywlprR~g~~gtEi~TLpG~-nlg~-i~Dv~Yf~ 334 (533) +++. ..+..+|+... +++. +..| +--+++ +..|+.+... --++ ..-+.++. T Consensus 294 ---~l~~---------~~~~~~g~~~~~~~~d~~~~~--~~~~------~~~~~~-~~~i~~~~~~ir~e~~~~~l~~~l 352 (500) T protein:vir:98 294 ---LTAL---------TVRTTDGDVVPRPRFESDQNV--YIRM------GGRDLD-SSAIQDLTTPIRADDYIKAINEGL 352 (500) T ss_pred ---Hhcc---------cCCCCCccccCCcccCCCcce--EEEc------CCCCCc-CcceeEeccccChHHHHHHHHHHH Confidence 0000 01111111100 0010 0000 000011 1234444322 1122 23377888 Q ss_pred HHHHHhcCCCeeeccCCCCc-cchhhhhHHHHHHHHHHHHHHHHHHHHHh----hhhh------hccCCCcc--ceeEEe Q lcl|Aclame:pro 335 NRLISALKVPKAFIGYEGDV-NAKNTLATQDIKFNNTIKRIQGFFVEELE----RMVR------MNKEFADQ--DFRLVM 401 (533) Q Consensus 335 ~kLy~aL~VP~srl~~~~~~-gr~~eI~rde~kF~kfI~rLr~~F~~~l~----~qLi------lk~i~t~e--ew~~~f 401 (533) +.+=.+.|++.+.|+.+++. .-+++|.-.+..-..-+.+.|+.|...|+ .-|- +.+...+. +..++| T Consensus 353 ~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f 432 (500) T protein:vir:98 353 SLFEMQIGVSAGLFSFDGKSMKTATEIVSENSDTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISL 432 (500) T ss_pred HHHHHHhCCCccccccCcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEe Confidence 88888999999999976553 23566654444444455555555544333 2221 11222223 334555 Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHhcCChhhhHH-HHHHhhhcccCCCCCcccccccchhhhcCc Q lcl|Aclame:pro 402 NRSNSIVEGERFAVIEQRIGIAERLKGWVRED-WIYSNILQIPYDLKPQ-EEVAEAAGGGGLFDTGGFGEETTPADFLGE 479 (533) Q Consensus 402 ~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~-~i~k~il~~tde~~~q-~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~ 479 (533) . ....+-+++++ +..+++.+. ..+++. |||+. ..+++|+.++ -+.|++|..... +.++.+..+ .|+ T Consensus 433 ~--d~i~~d~~~~~-~~~~~~v~a--Gi~s~~~~i~~~-~g~~eeea~~~l~~i~~E~~~~~---~~~~~~~~~---~g~ 500 (500) T protein:vir:98 433 D--DGVFTDRDAEL-DYWIKVVNA--GFGTREMAIQKV-LNVTEEKAQEIAAEINTGIVDEI---NQQRTDTHL---YGE 500 (500) T ss_pred C--CCCCCCHHHHH-HHHHHHHHc--CCCCHHHHHHhc-CCCCHHHHHHHHHHHHHhccccC---CCCCccccc---cCC Confidence 3 33222233222 222233332 456764 56654 5789876544 466766642111 111111111 222 No 210 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=96.14 E-value=0.00095 Score=37.15 Aligned_cols=392 Identities=15% Similarity=0.093 Sum_probs=173.2 Q ss_pred CCCcchhhhhhhHHHHHHhhccccccc-----CcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMG-----APHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDY 75 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~-----~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~ 75 (533) |-.+.+ .+.-+.|..++.... ..+-.+|-+.|+- -+. ....++-...++. T Consensus 1 ~~~~t~------~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~---~~~--------------~~~~~~~~~~~k~-- 55 (456) T protein:vir:10 1 MTASTP------AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPE---LTR--------------NTSAAWRSFQREA-- 55 (456) T ss_pred CCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh---cCc--------------ccChhhhhhhhhh-- Confidence 322222 111111111111100 0111233222210 000 0011111112222 Q ss_pred cChhHHHHHHHhhceeeecCCCCceeeeecc-cccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCe Q lcl|Aclame:pro 76 TDPLISTVLDIIADECTIPNENGNIVDVVTK-DIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTI 154 (533) Q Consensus 76 ~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~-~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI 154 (533) .+.-+.-+|+..+..++ ++++.+... +.+... ....|.+.-+|+....++++..+++|+.|.+...+ ++|- T Consensus 56 ~~n~~~~ivd~~~~~l~-----~~~~~~~~~~d~~~~~-~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d--~~g~ 127 (456) T protein:vir:10 56 RTNWGLMVRDSVADRII-----PNGITVGGSADSDLAL-RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR--DDGT 127 (456) T ss_pred hcchHHHHHHHHHhhhc-----cCCeecCCCCCcchHH-HHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeC--CCCc Confidence 24577888888876655 335544332 222222 23334445578899999999999999999876654 3566 Q ss_pred eeeEEcCcceeeEEeeccCcEE------EEEe-cccc-------------------eecc--------cCCc-------c Q lcl|Aclame:pro 155 EKFQVVSPYIFSKRYNPETDTW------YYVI-TDVY-------------------RNVV--------SGYF-------N 193 (533) Q Consensus 155 ~elr~ldP~~ik~v~d~~g~~e------~y~y-~~~~-------------------~~~~--------~~~~-------~ 193 (533) ..++.++|+.+-+++|..+++. +|.. +... .+.. .++. . T Consensus 128 ~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (456) T protein:vir:10 128 ATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAV 207 (456) T ss_pred eEEEEEccceeEEEEcCCCCcceEEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccC Confidence 6788999999988888665421 1100 0000 0000 0000 0 Q ss_pred cccCcccEEEEecCcccCcccccchhHHHHHHHHHHH--------HHHHHHHHHHHHhccccceeeecCCCCCchhhHHH Q lcl|Aclame:pro 194 EDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQL--------RLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINE 265 (533) Q Consensus 194 ~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqL--------rm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeq 265 (533) +....--++.|. .+.|+|=++..+.....+ ..++.....+|+.-....-.+-.|....+- T Consensus 208 ~~~~~~pvv~~~-------N~~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~----- 275 (456) T protein:vir:10 208 VTGSPPPVVVYQ-------NPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAI----- 275 (456) T ss_pred CCCCceeEEEec-------CCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCccccccccccccc----- Confidence 000000111111 124555555544333322 222333233333322111111111100000 Q ss_pred HHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChH-HHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 266 YLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLA-EDVEYMLNRLISALKVP 344 (533) Q Consensus 266 y~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i-~Dv~Yf~~kLy~aL~VP 344 (533) ..++.+ ....|. .|. ...+..|..++..+++.. +-++-+-..+...-++| T Consensus 276 ---~~~~~~------~~~~~~----------------~~~----~~~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~s~~p 326 (456) T protein:vir:10 276 ---DYASIF------EAAPGA----------------LWE----LPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTP 326 (456) T ss_pred ---chhhhh------hhhccc----------------ccc----CCCCcceEEecccChhHHHHHHHHHHHHHHhccCCC Confidence 000000 000111 121 123456767776666543 44777888888889999 Q ss_pred eeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhh----hhccCCCccceeEEecCCcHHHHHHHHHHHHHHH Q lcl|Aclame:pro 345 KAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMV----RMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRI 420 (533) Q Consensus 345 ~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qL----ilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~ 420 (533) ..-|+...+-.-+..|.--+..+..-+.+.|+.|..-|++-+ -+.|......+++.|.....-.... .. T Consensus 327 ~~~~~~~~~N~Sg~Ai~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~~v~w~~~~~~~~~~-------~a 399 (456) T protein:vir:10 327 LPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGE-------KY 399 (456) T ss_pred hHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeEEecCCCCcCHHH-------HH Confidence 998875332112233444455566667777777876554433 3456544456678886554332222 34 Q ss_pred HHHHHhh--hhhhHHHHHHHHhcCChhhhHH--HHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccc Q lcl|Aclame:pro 421 GIAERLK--GWVREDWIYSNILQIPYDLKPQ--EEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFD 494 (533) Q Consensus 421 ~~~~~~~--pyvgk~~i~k~il~~tde~~~q--~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (533) +++.++. ..+++. ....+|.++++++++ .+.+++|.. +..+.|++.|. +.... T Consensus 400 da~~kl~~~gi~~~~-~~~~~lg~~~~~i~~~e~er~~~e~~-------------------~~~~~~~~~~~-~~~~~ 456 (456) T protein:vir:10 400 SAASLAKAAGESWAS-IRRNILNYNADQIKQDDLDRAREQIT-------------------LFAGNPVQRPQ-EDGSR 456 (456) T ss_pred HHHHHHHHcCCChHH-HHHhhCCCCHHHHHHHHHHHHHHHHH-------------------HHhhhhhhcCC-CCCCC Confidence 4444443 345544 445688999865542 334444432 12223333331 10000 No 211 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=96.14 E-value=0.00095 Score=37.15 Aligned_cols=392 Identities=15% Similarity=0.093 Sum_probs=173.2 Q ss_pred CCCcchhhhhhhHHHHHHhhccccccc-----CcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMG-----APHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDY 75 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~-----~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~ 75 (533) |-.+.+ .+.-+.|..++.... ..+-.+|-+.|+- -+. ....++-...++. T Consensus 1 ~~~~t~------~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~---~~~--------------~~~~~~~~~~~k~-- 55 (456) T protein:vir:10 1 MTASTP------AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPE---LTR--------------NTSAAWRSFQREA-- 55 (456) T ss_pred CCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh---cCc--------------ccChhhhhhhhhh-- Confidence 322222 111111111111100 0111233222210 000 0011111112222 Q ss_pred cChhHHHHHHHhhceeeecCCCCceeeeecc-cccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCe Q lcl|Aclame:pro 76 TDPLISTVLDIIADECTIPNENGNIVDVVTK-DIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTI 154 (533) Q Consensus 76 ~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~-~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI 154 (533) .+.-+.-+|+..+..++ ++++.+... +.+... ....|.+.-+|+....++++..+++|+.|.+...+ ++|- T Consensus 56 ~~n~~~~ivd~~~~~l~-----~~~~~~~~~~d~~~~~-~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d--~~g~ 127 (456) T protein:vir:10 56 RTNWGLMVRDSVADRII-----PNGITVGGSADSDLAL-RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR--DDGT 127 (456) T ss_pred hcchHHHHHHHHHhhhc-----cCCeecCCCCCcchHH-HHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeC--CCCc Confidence 24577888888876655 335544332 222222 23334445578899999999999999999876654 3566 Q ss_pred eeeEEcCcceeeEEeeccCcEE------EEEe-cccc-------------------eecc--------cCCc-------c Q lcl|Aclame:pro 155 EKFQVVSPYIFSKRYNPETDTW------YYVI-TDVY-------------------RNVV--------SGYF-------N 193 (533) Q Consensus 155 ~elr~ldP~~ik~v~d~~g~~e------~y~y-~~~~-------------------~~~~--------~~~~-------~ 193 (533) ..++.++|+.+-+++|..+++. +|.. +... .+.. .++. . T Consensus 128 ~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (456) T protein:vir:10 128 ATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAV 207 (456) T ss_pred eEEEEEccceeEEEEcCCCCcceEEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccC Confidence 6788999999988888665421 1100 0000 0000 0000 0 Q ss_pred cccCcccEEEEecCcccCcccccchhHHHHHHHHHHH--------HHHHHHHHHHHHhccccceeeecCCCCCchhhHHH Q lcl|Aclame:pro 194 EDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQL--------RLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINE 265 (533) Q Consensus 194 ~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqL--------rm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeq 265 (533) +....--++.|. .+.|+|=++..+.....+ ..++.....+|+.-....-.+-.|....+- T Consensus 208 ~~~~~~pvv~~~-------N~~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~----- 275 (456) T protein:vir:10 208 VTGSPPPVVVYQ-------NPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAI----- 275 (456) T ss_pred CCCCceeEEEec-------CCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCccccccccccccc----- Confidence 000000111111 124555555544333322 222333233333322111111111100000 Q ss_pred HHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChH-HHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 266 YLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLA-EDVEYMLNRLISALKVP 344 (533) Q Consensus 266 y~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i-~Dv~Yf~~kLy~aL~VP 344 (533) ..++.+ ....|. .|. ...+..|..++..+++.. +-++-+-..+...-++| T Consensus 276 ---~~~~~~------~~~~~~----------------~~~----~~~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~s~~p 326 (456) T protein:vir:10 276 ---DYASIF------EAAPGA----------------LWE----LPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTP 326 (456) T ss_pred ---chhhhh------hhhccc----------------ccc----CCCCcceEEecccChhHHHHHHHHHHHHHHhccCCC Confidence 000000 000111 121 123456767776666543 44777888888889999 Q ss_pred eeeccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhh----hhccCCCccceeEEecCCcHHHHHHHHHHHHHHH Q lcl|Aclame:pro 345 KAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMV----RMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRI 420 (533) Q Consensus 345 ~srl~~~~~~gr~~eI~rde~kF~kfI~rLr~~F~~~l~~qL----ilk~i~t~eew~~~f~~dn~f~E~ke~ei~~~R~ 420 (533) ..-|+...+-.-+..|.--+..+..-+.+.|+.|..-|++-+ -+.|......+++.|.....-.... .. T Consensus 327 ~~~~~~~~~N~Sg~Ai~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~~v~w~~~~~~~~~~-------~a 399 (456) T protein:vir:10 327 LPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGE-------KY 399 (456) T ss_pred hHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeEEecCCCCcCHHH-------HH Confidence 998875332112233444455566667777777876554433 3456544456678886554332222 34 Q ss_pred HHHHHhh--hhhhHHHHHHHHhcCChhhhHH--HHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccc Q lcl|Aclame:pro 421 GIAERLK--GWVREDWIYSNILQIPYDLKPQ--EEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFD 494 (533) Q Consensus 421 ~~~~~~~--pyvgk~~i~k~il~~tde~~~q--~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (533) +++.++. ..+++. ....+|.++++++++ .+.+++|.. +..+.|++.|. +.... T Consensus 400 da~~kl~~~gi~~~~-~~~~~lg~~~~~i~~~e~er~~~e~~-------------------~~~~~~~~~~~-~~~~~ 456 (456) T protein:vir:10 400 SAASLAKAAGESWAS-IRRNILNYNADQIKQDDLDRAREQIT-------------------LFAGNPVQRPQ-EDGSR 456 (456) T ss_pred HHHHHHHHcCCChHH-HHHhhCCCCHHHHHHHHHHHHHHHHH-------------------HHhhhhhhcCC-CCCCC Confidence 4444443 345544 445688999865542 334444432 12223333331 10000 No 212 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=95.87 E-value=0.0013 Score=36.35 Aligned_cols=360 Identities=11% Similarity=0.032 Sum_probs=189.7 Q ss_pred HHHHhhcccccc---cCccc------CCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHH Q lcl|Aclame:pro 15 NFTNFLSPMYGM---GAPHG------AGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLD 85 (533) Q Consensus 15 ~~~~~~~~~~s~---~~p~~------~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId 85 (533) ..+.+...|..- -.|+. .+|.+.++- . +.. -..++-..||.. -+=+.-+|+ T Consensus 1 ~~~~~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~~---------------~-~~~-~p~~~~~~~~~v---~nw~~~iVd 60 (409) T protein:vir:94 1 MTEKGIGYLRFKLSVHKRRAEMRYDQYAMKYVDRF---------------K-GIT-IPQALSQQYRSI---LGWCAKGVD 60 (409) T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHhcccCchhh---------------c-Chh-hhHHHHHHHhhh---cchhHHHHH Confidence 222222222211 01111 222221110 0 000 012333455522 146777888 Q ss_pred HhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCccee Q lcl|Aclame:pro 86 IIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIF 165 (533) Q Consensus 86 ~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~i 165 (533) .+++-+.+-++. ..+ +-...+...=+|+.+..+.++.-+++|+.|.-..-+ .+|-..++.++|+.+ T Consensus 61 s~a~rl~~~Gf~-------~~d-----~~l~~i~~~N~ld~~~~~~~~~aliyG~sf~~v~~~--~dg~~~i~~~sp~~~ 126 (409) T protein:vir:94 61 SLADRLVFREFE-------NDD-----FTVNEIFEENNPDIFFDSAVLSSLIASCSFTYISKG--ENDAVRLQVIEAVNA 126 (409) T ss_pred HhHhhcccCccc-------CCc-----hHHHHHHHhcChhHHHHHHHHHHHHhcceeEEEecC--CCCceEEEEeccceE Confidence 887755544432 111 112344455578899999999999999988765543 245456889999999 Q ss_pred eEEeeccCcEE--EEE---------------ecccceec--ccCC----cccccCcccEEEEecCcccCcccccchhHH- Q lcl|Aclame:pro 166 SKRYNPETDTW--YYV---------------ITDVYRNV--VSGY----FNEDIPEEDVIHFSHKIDTNFFPYGRSYLE- 221 (533) Q Consensus 166 k~v~d~~g~~e--~y~---------------y~~~~~~~--~~~~----~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~- 221 (533) ..++|..+++- +|. |.+..++. ...+ ..+.+..=-+++|.++.-.+ .++|.|-|. T Consensus 127 ~~i~D~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vPvV~f~n~~~~~-~~~G~s~I~e 205 (409) T protein:vir:94 127 TGIIDPITGLLTEGYAVLERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGHPLLVPIIHRPDAV-RPFGRSRITR 205 (409) T ss_pred EEEEecCCCceeeeEEEEEecCCCceEEEEEEecCcEEEEEecCceeEeeeCCCCCcceEEeccccccc-cccCccccch Confidence 88888866531 111 21111110 0000 01122222467776543222 367877663 Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHH Q lcl|Aclame:pro 222 SARAIWNQ-LRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESIL 300 (533) Q Consensus 222 ~Aik~~Nq-Lrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~sml 300 (533) ..+...+- -|.+-+.++.-...=.|.|-++=+|-...|..+ .+..+++ + T Consensus 206 ~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~d~~~~~~----~~~~~~~-------------------------i- 255 (409) T protein:vir:94 206 SGMYWQSNAKRTLERADVTAEFYSFPQKYVTGLSDDAEPMET----WKATVSS-------------------------M- 255 (409) T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcChhheeEecCCCCcccch----hhhhHHH-------------------------h- Confidence 33333332 355667777777777777777655432112111 1111111 1 Q ss_pred hhhhcccccCCCcceeeecCCCCCChH-HHHHHHHHHHHHhcCCCeeeccCCCCc-cchhhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 301 KDYFIPRRGDRRAVEIDILQGSKVDLA-EDVEYMLNRLISALKVPKAFIGYEGDV-NAKNTLATQDIKFNNTIKRIQGFF 378 (533) Q Consensus 301 eDywlprR~g~~gtEi~TLpG~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~~-gr~~eI~rde~kF~kfI~rLr~~F 378 (533) ..+|.-+.+-+.+|..+++++|+.. +-++-+-..+...-++|..-|+....- .-+..|.-.+....+-+.+.|+.| T Consensus 256 --~~~~~d~dg~~~~v~q~~~~~l~~~~~~l~~~~~~~a~~t~lP~~~lg~~~~NpsSa~Al~a~~~~L~~~a~~k~~~f 333 (409) T protein:vir:94 256 --LQFTKDEDGDKPTLGQFTQPSMSPFTEQLRTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSL 333 (409) T ss_pred --hcCCCCCCCCCceEEecCCCChhHHHHHHHHHHHHHhhhcCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHH Confidence 3356656666788989998877643 557777788888899999999864431 123345556777888888889989 Q ss_pred HHHHhh----hhhhccCCC--ccce---eEEecCCcHHHHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHhcCChh Q lcl|Aclame:pro 379 VEELER----MVRMNKEFA--DQDF---RLVMNRSNSIVEGERFAVIEQRIGIAERL----KGWVREDWIYSNILQIPYD 445 (533) Q Consensus 379 ~~~l~~----qLilk~i~t--~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~~~----~pyvgk~~i~k~il~~tde 445 (533) .+-|+. -+-+.+... +++| ++.|. +++-.+ .-.+.+..+.+..| -++.+++.++.. |.+|+. T Consensus 334 g~~~~~~~rla~~i~~~~~~~~~~~~~~~v~W~-p~~~~~---~~~~a~~aDa~~Kl~~ag~~~~~~~~~~~~-lG~~~~ 408 (409) T protein:vir:94 334 GAGLLNVAYLAACLRDDAPYLREQFRKTKPKWE-PLFEAD---ASMLSLIGDGAIKLNQAIPEFINKDTIRDL-TGIEGG 408 (409) T ss_pred HHHHHHHHHHHHHHhCCCCccccccccceEEec-cCCCcc---hHHHHHHHHHHHHHHHhcccccchhHHHHH-cCCCCC Confidence 855443 232333322 4566 46675 333222 22234444444443 346666766654 455542 Q ss_pred h Q lcl|Aclame:pro 446 L 446 (533) Q Consensus 446 ~ 446 (533) . T Consensus 409 d 409 (409) T protein:vir:94 409 E 409 (409) T ss_pred C Confidence 2 No 213 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=95.78 E-value=0.0015 Score=36.11 Aligned_cols=400 Identities=12% Similarity=0.019 Sum_probs=165.3 Q ss_pred CCC--c-chhhhhhhHHHHHHhhcccccccCcc------cCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHH Q lcl|Aclame:pro 1 MPS--L-EKYKKLNEAVNFTNFLSPMYGMGAPH------GAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYD 71 (533) Q Consensus 1 ~~~--~-~~w~k~de~~~~~~~~~~~~s~~~p~------~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR 71 (533) ||- + .+....+.....+-+...+.+-..|+ -..|.+.|... +... .+... .....++ T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~i~~~---~~~~-------~~~~~----~~~~~~~ 72 (479) T protein:vir:79 7 SETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNK---RRYY-------LLDGA----KVDDFTK 72 (479) T ss_pred cccceEeeccccCChhHHHHHHHHHHhhhhHHHHHHHHHHhccCCccccc---cccc-------ccccc----ccccccc Confidence 333 1 12222333332222333222222211 12233333211 1000 00000 0000111 Q ss_pred ---HHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeec Q lcl|Aclame:pro 72 ---RMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEK 148 (533) Q Consensus 72 ---~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid 148 (533) ++ .++-....|+..+...+ +.|+.+..++.+. +...+.+.. =+|+....+.++..++.|+.|++...| T Consensus 73 ~~~ki--~~~~~~~Ivd~~~~~l~-----g~p~~~~~~~~~~-~~~~~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d 143 (479) T protein:vir:79 73 VNNKA--INNYHKLLVDQKVGYSV-----GNPIVFNADDDNL-TKLLNDLLG-EEFDDTITELYLNASNKGVEWLHPYIN 143 (479) T ss_pred Cccee--ecchHHHHHHHHHhhhh-----cCCceeccCCHHH-HHHHHHHHh-cCHHHHHHHHHHHHHhcCeEEEEEEeC Confidence 11 13445555666555443 4566666655222 222222222 279999999999999999999988775 Q ss_pred CCCCCeeeeEEcCcceeeEEeeccCc--EEEEE-----e-------------cccc--eecccCCcc-c----------- Q lcl|Aclame:pro 149 GSDGTIEKFQVVSPYIFSKRYNPETD--TWYYV-----I-------------TDVY--RNVVSGYFN-E----------- 194 (533) Q Consensus 149 ~~k~gI~elr~ldP~~ik~v~d~~g~--~e~y~-----y-------------~~~~--~~~~~~~~~-~----------- 194 (533) . +|-..++.+||+.+-++++.... ..+++ . +... .+...++.. . T Consensus 144 ~--~~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~y~~~~~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 221 (479) T protein:vir:79 144 R--KGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMT 221 (479) T ss_pred C--CCceEEEEEccceeEEEEeCCCCCceEEEEEEEEEeecCCceEEEEEEEeCCcEEEEEecCCccccccccccccccc Confidence 3 46567999999999999876543 11111 1 1100 000000000 0 Q ss_pred --------------ccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeecCCCCCc Q lcl|Aclame:pro 195 --------------DIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLME-DALMLYRVVRSVDRRVFYVDVGNVP 259 (533) Q Consensus 195 --------------~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~E-dalVIyRi~RAPeRr~fyidvGnlp 259 (533) .+..=.+++|. . .+.|.|-++.++....-|-.+- +....-+..+-|- .++...+ T Consensus 222 ~~~~~~~~~~~~~~~~~~vPvv~~~-----n-n~~g~sd~~~v~~liDa~d~~~S~~~~~~~~~~~~~---~v~~g~~-- 290 (479) T protein:vir:79 222 DIQEGHFRINNKEQGWGKVPFIPFK-----N-NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVI---YVLKEYP-- 290 (479) T ss_pred ccccccccccccccCCCcccEEEec-----C-CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCce---eeeecCC-- Confidence 00000122221 1 2356777776555544443322 2222223333322 2222211 Q ss_pred hhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCC-hHHHHHHHHHHHH Q lcl|Aclame:pro 260 PDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVD-LAEDVEYMLNRLI 338 (533) Q Consensus 260 ~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg-~i~Dv~Yf~~kLy 338 (533) .....+.... .+. -.|+ .+ +++.+.+.-|.+. +.. .-.-++-+++.+| T Consensus 291 ~~~~~~~~~~--------------------~~~----~~~i---~~---~~~~~~~~l~~~~-~~~~~~~~~~~l~~~i~ 339 (479) T protein:vir:79 291 GTSLQEFIDN--------------------IRY----YKSI---KV---DGGGGVDKLEINI-PVEAKKELLDRLEKNII 339 (479) T ss_pred ccccccchhh--------------------hhh----ccce---ec---CCCCcceEEeccC-CHHHHHHHHHHHHHHHH Confidence 0000000000 000 0011 01 1222234433332 332 2234777788899 Q ss_pred HhcCCCeeeccCCCCccchhhhhHHH--HHHHHHHHHHHHHHHHHHhhh--hhh-----ccCC--CccceeEEecCCcHH Q lcl|Aclame:pro 339 SALKVPKAFIGYEGDVNAKNTLATQD--IKFNNTIKRIQGFFVEELERM--VRM-----NKEF--ADQDFRLVMNRSNSI 407 (533) Q Consensus 339 ~aL~VP~srl~~~~~~gr~~eI~rde--~kF~kfI~rLr~~F~~~l~~q--Lil-----k~i~--t~eew~~~f~~dn~f 407 (533) ....+|-.-. .++|..|..+..- .....-+.+.+..|.+.|+.. ||+ ++.. ...+..+.|...--- T Consensus 340 ~~s~~p~~~~---~~~gn~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~ 416 (479) T protein:vir:79 340 IFGQGVNPES---QNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMII 416 (479) T ss_pred HHhCcccccc---ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccceEEeCCCCCc Confidence 9999996432 2355555544422 112224455555566555442 222 2222 223446777654443 Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCccccc Q lcl|Aclame:pro 408 VEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESP 487 (533) Q Consensus 408 ~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (533) .+...+ ++++.+...++++++.+.+-..+| ..++-+.|++|.......... .+. ... T Consensus 417 ~~~~~a-------~~~~kl~g~iS~et~l~~l~~v~d-~~~E~~ri~~E~~~~~~~~~~----------~~~-----~~~ 473 (479) T protein:vir:79 417 NEAEKI-------DMAAKSTGIVSDETIVSNHPWVED-VNDELERLKKQEDTQKEYDDL----------IPN-----NQD 473 (479) T ss_pred CHHHHH-------HHHHHHhccCcHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHHhc----------cCc-----ccC Confidence 333333 344445567899999887655544 223334444443211110000 000 011 Q ss_pred CCCccc Q lcl|Aclame:pro 488 RGRTEF 493 (533) Q Consensus 488 ~~~~~~ 493 (533) ...+|+ T Consensus 474 ~~~~e~ 479 (479) T protein:vir:79 474 GVIDET 479 (479) T ss_pred CCcCcC Confidence 111111 No 214 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=95.74 E-value=0.0015 Score=36.01 Aligned_cols=415 Identities=12% Similarity=0.050 Sum_probs=160.9 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHH-------HH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYD-------RM 73 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR-------~m 73 (533) ||.=|+....+ .+++.....=+ ++.- ...+...... ....--...+|-|.. ......+.+. .. T Consensus 7 ~~~~~~~~~~~----~~~~~~~~~~~--~~~i--~~~i~~~~~~-~~~~~~~~~YY~g~~-~i~~~~~~~~~~~~~~~~~ 76 (474) T protein:vir:94 7 MPWDKPYGEEV----VEQLKPQFETQ--EEMI--VRLIDDHRKQ-LDKITVGQRYYDKDN-DIVKQMKKVDVHGNIDYDK 76 (474) T ss_pred ccCCCchhhHH----HHhhhhcccCH--HHHH--HHHHHHHHHH-HHHHHHHHHHhcccc-chhcccchhcccccccccc Confidence 44333332211 11111111100 0000 0000000000 000000112222211 0000000000 00 Q ss_pred h---hcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCC Q lcl|Aclame:pro 74 D---YTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGS 150 (533) Q Consensus 74 ~---~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~ 150 (533) . ..++-..-.++..+...+ +.|+.+..++-+.. +..+.+.. -+|+....++++.+++.|+.|.+...| T Consensus 77 ~~~ki~~n~~k~Ivd~~~~~l~-----g~p~~~~~~d~~~~-~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~~~~d-- 147 (474) T protein:vir:94 77 PDWRITTNFHQNLVDQKVSYVA-----SKPVTYSCEDENVL-KVIHDVLD-TRWDNKLIDILTATSNKGIDWLQVYIN-- 147 (474) T ss_pred CcceeecchHHHHHHHHHhhhh-----cCCceeccCcHHHH-HHHHHHHh-ccHHHHHHHHHHHHhhcCceEEEEEec-- Confidence 0 012344445555554333 45666666552222 22222322 378999999999999999999987775 Q ss_pred CCCeeeeEEcCcceeeEEeecc--CcEEEEE-------------ecccc--eecc--cCCc---------------cccc Q lcl|Aclame:pro 151 DGTIEKFQVVSPYIFSKRYNPE--TDTWYYV-------------ITDVY--RNVV--SGYF---------------NEDI 196 (533) Q Consensus 151 k~gI~elr~ldP~~ik~v~d~~--g~~e~y~-------------y~~~~--~~~~--~~~~---------------~~~~ 196 (533) ++|-..+..++|+.+-++++.. ++..+++ |+... .+.. ++.. .+.+ T Consensus 148 ~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (474) T protein:vir:94 148 ENGEMKLFRVPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNW 227 (474) T ss_pred CCCeeEEEEEcccceEEEEcCCCCCceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCC Confidence 3566679999999999998754 2211111 22211 1111 0000 0001 Q ss_pred CcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHH-HHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhh Q lcl|Aclame:pro 197 PEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDAL-MLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYK 275 (533) Q Consensus 197 ~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Edal-VIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~k 275 (533) ..=.++.|.. .+.|.|-++.++.....|-.+=-.+ ..-+-.+.|-+- +...+.. ..++. T Consensus 228 g~vPvv~~~n------n~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv---~~g~~~~--~~~~~--------- 287 (474) T protein:vir:94 228 GRVPFIAFKN------NPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYI---LKGYEGE--DLEEF--------- 287 (474) T ss_pred CccceEEecC------CcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceee---eecCCcc--cchhh--------- Confidence 1112333322 2467777777655555544332222 122333333221 1111110 00000 Q ss_pred hceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChH-HHHHHHHHHHHHhcCCCeeeccCCCCc Q lcl|Aclame:pro 276 RDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLA-EDVEYMLNRLISALKVPKAFIGYEGDV 354 (533) Q Consensus 276 nk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~~ 354 (533) +..+..+++-.-+++.+.+.-|.+. +.+.. .-++-+.+.+|+..++|---. +... T Consensus 288 ---------------------~~~~~~~~~i~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~I~~~s~~p~~~~--~~~~ 343 (474) T protein:vir:94 288 ---------------------MRGLKYYKAINVDGDGGVETIQVEV-PVSSTKEYIDLMRVYIMEFGQGVDFQT--DKFG 343 (474) T ss_pred ---------------------hhhhhccceeeccCCCceeEEeecC-CHHHHHHHHHHHHHHHHHHhCccccCc--cccc Confidence 1111111111112333333333222 33322 336778888999999995221 1111 Q ss_pred cchhhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--hhc--cCC-CccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 355 NAKNTLAT--QDIKFNNTIKRIQGFFVEELERMV--RMN--KEF-ADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLK 427 (533) Q Consensus 355 gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--ilk--~i~-t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~ 427 (533) |+.|..+. .......-+.+.+..|...|+.-+ |++ |+- ...+.+++|.+..--.+...+ +++.++ T Consensus 344 ~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~d~~~i~v~f~~~~p~~~~e~a-------~~~~~~- 415 (474) T protein:vir:94 344 SAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNLKTDVKDIEISFNFNRMMNDAEQS-------QIIAQS- 415 (474) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCcccCHHHHH-------HHHHHc- Confidence 33333332 222233345555566766655432 332 221 112346777543332233222 233443 Q ss_pred hhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCcc Q lcl|Aclame:pro 428 GWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGEL 507 (533) Q Consensus 428 pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (533) .-+++.++.+.+-..+| ..++-++|++|..+..... ++ . .+.+.+.+.+ T Consensus 416 g~iS~et~l~~l~~v~D-~~~E~eri~~E~~~~~~~~-------~~------~------------~~~~~~~~~~----- 464 (474) T protein:vir:94 416 QYLSRETLVKSSPLVDD-YKAELERIEQEQMEYNKQL-------PN------L------------DDGGADGAQQ----- 464 (474) T ss_pred CCCCHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHhhc-------cc------c------------CCCCCCCccc----- Confidence 56899998877655554 3344455555543211100 00 0 0000000000 Q ss_pred CcCcccCCchhhcCCcc Q lcl|Aclame:pro 508 NLGGAFEEFEEETGGGE 524 (533) Q Consensus 508 ~~~~~~~~~~~~~g~~~ 524 (533) ..+..++.+| T Consensus 465 -------~~~~~~~~~e 474 (474) T protein:vir:94 465 -------QEGSNNKESE 474 (474) T ss_pred -------CCCCcccccC Confidence 0000000011 No 215 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=95.74 E-value=0.0015 Score=36.01 Aligned_cols=415 Identities=12% Similarity=0.050 Sum_probs=160.9 Q ss_pred CCCcchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHH-------HH Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYD-------RM 73 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR-------~m 73 (533) ||.=|+....+ .+++.....=+ ++.- ...+...... ....--...+|-|.. ......+.+. .. T Consensus 7 ~~~~~~~~~~~----~~~~~~~~~~~--~~~i--~~~i~~~~~~-~~~~~~~~~YY~g~~-~i~~~~~~~~~~~~~~~~~ 76 (474) T protein:vir:97 7 MPWDKPYGEEV----VEQLKPQFETQ--EEMI--VRLIDDHRKQ-LDKITVGQRYYDKDN-DIVKQMKKVDVHGNIDYDK 76 (474) T ss_pred ccCCCchhhHH----HHhhhhcccCH--HHHH--HHHHHHHHHH-HHHHHHHHHHhcccc-chhcccchhcccccccccc Confidence 44333332211 11111111100 0000 0000000000 000000112222211 0000000000 00 Q ss_pred h---hcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCC Q lcl|Aclame:pro 74 D---YTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGS 150 (533) Q Consensus 74 ~---~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~ 150 (533) . ..++-..-.++..+...+ +.|+.+..++-+.. +..+.+.. -+|+....++++.+++.|+.|.+...| T Consensus 77 ~~~ki~~n~~k~Ivd~~~~~l~-----g~p~~~~~~d~~~~-~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~~~~d-- 147 (474) T protein:vir:97 77 PDWRITTNFHQNLVDQKVSYVA-----SKPVTYSCEDENVL-KVIHDVLD-TRWDNKLIDILTATSNKGIDWLQVYIN-- 147 (474) T ss_pred CcceeecchHHHHHHHHHhhhh-----cCCceeccCcHHHH-HHHHHHHh-ccHHHHHHHHHHHHhhcCceEEEEEec-- Confidence 0 012344445555554333 45666666552222 22222322 378999999999999999999987775 Q ss_pred CCCeeeeEEcCcceeeEEeecc--CcEEEEE-------------ecccc--eecc--cCCc---------------cccc Q lcl|Aclame:pro 151 DGTIEKFQVVSPYIFSKRYNPE--TDTWYYV-------------ITDVY--RNVV--SGYF---------------NEDI 196 (533) Q Consensus 151 k~gI~elr~ldP~~ik~v~d~~--g~~e~y~-------------y~~~~--~~~~--~~~~---------------~~~~ 196 (533) ++|-..+..++|+.+-++++.. ++..+++ |+... .+.. ++.. .+.+ T Consensus 148 ~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (474) T protein:vir:97 148 ENGEMKLFRVPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNW 227 (474) T ss_pred CCCeeEEEEEcccceEEEEcCCCCCceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCC Confidence 3566679999999999998754 2211111 22211 1111 0000 0001 Q ss_pred CcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHH-HHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhh Q lcl|Aclame:pro 197 PEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDAL-MLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYK 275 (533) Q Consensus 197 ~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Edal-VIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~k 275 (533) ..=.++.|.. .+.|.|-++.++.....|-.+=-.+ ..-+-.+.|-+- +...+.. ..++. T Consensus 228 g~vPvv~~~n------n~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv---~~g~~~~--~~~~~--------- 287 (474) T protein:vir:97 228 GRVPFIAFKN------NPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYI---LKGYEGE--DLEEF--------- 287 (474) T ss_pred CccceEEecC------CcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceee---eecCCcc--cchhh--------- Confidence 1112333322 2467777777655555544332222 122333333221 1111110 00000 Q ss_pred hceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCCCCChH-HHHHHHHHHHHHhcCCCeeeccCCCCc Q lcl|Aclame:pro 276 RDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLA-EDVEYMLNRLISALKVPKAFIGYEGDV 354 (533) Q Consensus 276 nk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~~ 354 (533) +..+..+++-.-+++.+.+.-|.+. +.+.. .-++-+.+.+|+..++|---. +... T Consensus 288 ---------------------~~~~~~~~~i~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~I~~~s~~p~~~~--~~~~ 343 (474) T protein:vir:97 288 ---------------------MRGLKYYKAINVDGDGGVETIQVEV-PVSSTKEYIDLMRVYIMEFGQGVDFQT--DKFG 343 (474) T ss_pred ---------------------hhhhhccceeeccCCCceeEEeecC-CHHHHHHHHHHHHHHHHHHhCccccCc--cccc Confidence 1111111111112333333333222 33322 336778888999999995221 1111 Q ss_pred cchhhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--hhc--cCC-CccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 355 NAKNTLAT--QDIKFNNTIKRIQGFFVEELERMV--RMN--KEF-ADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLK 427 (533) Q Consensus 355 gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--ilk--~i~-t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~ 427 (533) |+.|..+. .......-+.+.+..|...|+.-+ |++ |+- ...+.+++|.+..--.+...+ +++.++ T Consensus 344 ~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~d~~~i~v~f~~~~p~~~~e~a-------~~~~~~- 415 (474) T protein:vir:97 344 SAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNLKTDVKDIEISFNFNRMMNDAEQS-------QIIAQS- 415 (474) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCcccCHHHHH-------HHHHHc- Confidence 33333332 222233345555566766655432 332 221 112346777543332233222 233443 Q ss_pred hhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccCCCcc Q lcl|Aclame:pro 428 GWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGEL 507 (533) Q Consensus 428 pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (533) .-+++.++.+.+-..+| ..++-++|++|..+..... ++ . .+.+.+.+.+ T Consensus 416 g~iS~et~l~~l~~v~D-~~~E~eri~~E~~~~~~~~-------~~------~------------~~~~~~~~~~----- 464 (474) T protein:vir:97 416 QYLSRETLVKSSPLVDD-YKAELERIEQEQMEYNKQL-------PN------L------------DDGGADGAQQ----- 464 (474) T ss_pred CCCCHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHhhc-------cc------c------------CCCCCCCccc----- Confidence 56899998877655554 3344455555543211100 00 0 0000000000 Q ss_pred CcCcccCCchhhcCCcc Q lcl|Aclame:pro 508 NLGGAFEEFEEETGGGE 524 (533) Q Consensus 508 ~~~~~~~~~~~~~g~~~ 524 (533) ..+..++.+| T Consensus 465 -------~~~~~~~~~e 474 (474) T protein:vir:97 465 -------QEGSNNKESE 474 (474) T ss_pred -------CCCCcccccC Confidence 0000000011 No 216 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=95.69 E-value=0.0016 Score=35.89 Aligned_cols=391 Identities=14% Similarity=0.097 Sum_probs=162.8 Q ss_pred ccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhh-----------------------cChhH Q lcl|Aclame:pro 24 YGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDY-----------------------TDPLI 80 (533) Q Consensus 24 ~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~-----------------------~~PEV 80 (533) .-+.+|+-=.=...-+++. +-.. ..+. +.. .-+.+|+.+.. ..+-+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~i~-~~i~--------~~~-~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~ki~~n~~ 69 (452) T protein:vir:36 1 MKYKPPKLMTFSKDEPITV-EVVT-KFME--------KHK-LEVARYEYLKNMYLGIMAIDDEPAKDSWKPDNRLAVNFT 69 (452) T ss_pred CcccCceeEEcCCccCCCH-HHHH-HHHH--------HHH-HHHHHHHHHHHHhccccccccCccccccCccceeecchH Confidence 2222333100000011110 0000 0000 000 00112221111 11233 Q ss_pred HHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEc Q lcl|Aclame:pro 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVV 160 (533) Q Consensus 81 ~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~l 160 (533) ..+|+..+...+ +.|+.+..++.+ .++....+.+--+|+.+..+.++.+++.|+.|++...|. +|-..++.+ T Consensus 70 ~~ivd~~~~~l~-----g~~~~~~~~d~~-~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~--~g~~~i~~~ 141 (452) T protein:vir:36 70 KYIVDTFTGYFN-----GIPVKKSHSDKE-ILTKLQEFDNLNDMEDEESELAKMACIYGRAFEFLYQDE--DTQTNVVYN 141 (452) T ss_pred HHHHHHHhhhhc-----ccCceeecCChh-HHHHHHHHHhhcChhHHHHHHHHHHHhcCeEEEEEEecC--CCeeEEEEE Confidence 344444443332 455555555422 233344444445789999999999999999999988764 455679999 Q ss_pred CcceeeEEeeccCcE--EEE--------------Eeccccee--cccC-Cc------ccccCcccEEEEecCcccCcccc Q lcl|Aclame:pro 161 SPYIFSKRYNPETDT--WYY--------------VITDVYRN--VVSG-YF------NEDIPEEDVIHFSHKIDTNFFPY 215 (533) Q Consensus 161 dP~~ik~v~d~~g~~--e~y--------------~y~~~~~~--~~~~-~~------~~~~~~~dvi~~~~~~~~d~~~~ 215 (533) ||+.+.++++..+.. .++ +|+....+ .... +. .+.+..=.+++|.. .+. T Consensus 142 ~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n------~~~ 215 (452) T protein:vir:36 142 SPENMFMVYDDTVKQEPLFAVRYGVDEDKKLQGEVYTLLETIKISGENDEISFGEGTYNPYPDLPVVEFYF------NEE 215 (452) T ss_pred cccceEEEEcCCCCCceEEEEEEEEecCceEEEEEEecCeEEEEEEcCCceEEecceeccCCcccEEEecC------CCC Confidence 999999999876531 111 12222111 1100 00 00111111333321 135 Q ss_pred cchhHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccc Q lcl|Aclame:pro 216 GRSYLESARAIWNQLRLME-DALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYF 294 (533) Q Consensus 216 g~s~L~~Aik~~NqLrm~E-dalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~ 294 (533) |.|-|+..+.....+-++= +....-+-.+.|-+-+ -.+.++.. -+.++. . ++++.=..+ T Consensus 216 g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~p~~~~---~g~~~~~~----~~~~~~-~--~~~~~~~~~---------- 275 (452) T protein:vir:36 216 RMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTF---LGAAVEEE----DLKNIR-S--NRVINYYAD---------- 275 (452) T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhcCceeEe---ecCCcCch----hhhhhh-h--cceEEecCC---------- Confidence 6666655444443333221 1222223334443322 22233221 111110 0 111111111 Q ss_pred hhhhHHhhhhcccccCCCcceeeecCC-CCCChH-HHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhH--HHHHHHHH Q lcl|Aclame:pro 295 SIESILKDYFIPRRGDRRAVEIDILQG-SKVDLA-EDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLAT--QDIKFNNT 370 (533) Q Consensus 295 n~~smleDywlprR~g~~gtEi~TLpG-~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~r--de~kF~kf 370 (533) +.+.+-.+.+|-. .+.+.+ .-+.-+.+.+|.-.++|- +. .+.+|+.|..+. -+.....- T Consensus 276 --------------~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~--~~-~~~~gn~Sg~Al~~~~~~l~~k 338 (452) T protein:vir:36 276 --------------GEGKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVAN--IS-DESFGSSSGVSLAYKLQAMSNL 338 (452) T ss_pred --------------CCccCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCccc--cC-cccccCCcHHHHHHHHHHHHHH Confidence 1122334444432 233322 337778899999999995 33 234454433332 22223344 Q ss_pred HHHHHHHHHHHHhhhh--h---hccCCCccce---eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC Q lcl|Aclame:pro 371 IKRIQGFFVEELERMV--R---MNKEFADQDF---RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQI 442 (533) Q Consensus 371 I~rLr~~F~~~l~~qL--i---lk~i~t~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~ 442 (533) +.+.++.|...|+.-+ | +...-...+| ++.|.+.---.+.. .+++++.+...+++.++.+.+-.. T Consensus 339 ~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~i~f~~~~p~d~~~-------~a~~~~k~~g~iS~et~~~~~~~~ 411 (452) T protein:vir:36 339 ALSFQRKFQSSLNSRYKLFCELSTNVSNKDSWKDIEYTFTRNEPKDIKE-------QAETANILMGITSQETALSVISVI 411 (452) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCcCHHH-------HHHHHHHHhccCChHHHHHhCCCC Confidence 5555566665554432 2 1222223344 57776443322322 334455556678999999876555 Q ss_pred ChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCcc Q lcl|Aclame:pro 443 PYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEE 502 (533) Q Consensus 443 tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (533) +| -.++-++|++|..+.... .. .+..+++ ..+.+.+- .+++ T Consensus 412 ~d-~~~E~~ri~~E~~~~~~~--------~~---~~~~~~~------~~~~~~~~-~~~e 452 (452) T protein:vir:36 412 PD-VQAEMEKIKKEEASTAIF--------DK---DKQPSEK------GTDTVVSE-TNEE 452 (452) T ss_pred CC-HHHHHHHHHHHHHHHHHH--------Hh---hccCCCC------cccccCcc-ccCC Confidence 44 233344555553211000 00 0000000 00111111 1111 No 217 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=95.68 E-value=0.0016 Score=35.86 Aligned_cols=417 Identities=12% Similarity=0.041 Sum_probs=170.8 Q ss_pred CCCcchhhhhhhHHHH--------------HHhhcccccccCcc------cCCCCcccCCCCCccccchhhcccccCccc Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNF--------------TNFLSPMYGMGAPH------GAGGSSMIPINMYHPFATAGYASRFYGGIE 60 (533) Q Consensus 1 ~~~~~~w~k~de~~~~--------------~~~~~~~~s~~~p~------~~~gas~i~~~~~~~~~~~~~~~~~ygg~~ 60 (533) +=+++|.++....-.. ..+.+++...-.|+ -..|.+..... .... . . T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~r~~~l~~yY~g~~~~i~~--~~~~-----~------~ 81 (501) T protein:vir:27 15 VLNLRFHRESRIRYRADNLEELMVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLQ--FGRR-----K------D 81 (501) T ss_pred hhhcccChhHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc--cCcc-----C------c Confidence 1111111111100000 00000010010010 12221111000 0000 0 0 Q ss_pred cchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHH---HHHHHHhhhHHHHHHHHHHHhh Q lcl|Aclame:pro 61 FNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAIL---SYLDYVINIEKNAYPIIRNMIK 137 (533) Q Consensus 61 ~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~---~~i~~ll~f~~~~~e~~R~wyv 137 (533) .+ ..-.++ .++-+.-+|+.++...+ +.|+.+..++.+-.+.+. ..|.+.-+|+....+.++..++ T Consensus 82 ~~-----~~~~ki--~~n~~k~Ivd~~~~yl~-----g~p~~~~~~d~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~ 149 (501) T protein:vir:27 82 RE-----MADKRA--VHNYGRMISKFKTGYLA-----GNPIRVEYDDNDNNSQNDDTIKRIGRINDIDSHNRTLIRDLSQ 149 (501) T ss_pred cc-----ccccee--ccchHHHHHHHHhhhhc-----ccCeeEecCCccchHHHHHHHHHHHHhcChhHHHHHHHHHHhh Confidence 00 000123 25778888888887665 567777776544444433 3344556899999999999999 Q ss_pred cCceeEEEeecCCCCCeeeeEEcCcceeeEEeeccCc--EEEE-----------------Eeccccee--cccCC----- Q lcl|Aclame:pro 138 YGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETD--TWYY-----------------VITDVYRN--VVSGY----- 191 (533) Q Consensus 138 DGr~~~~kiid~~k~gI~elr~ldP~~ik~v~d~~g~--~e~y-----------------~y~~~~~~--~~~~~----- 191 (533) .|+.|.+...|. +|=..+..+||+.+-++++.... ..++ +|+....+ ...+. T Consensus 150 ~G~a~~~vy~de--d~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~~~~vyt~~~v~~~~~~~~~~~~~ 227 (501) T protein:vir:27 150 TGRAYEVIYRNE--YDETRIKRLNPLETFVIYDNSLEDNSIAAVRYYNRGTLQNAKDVVEIYTNEHIYTLDASDDFNEIS 227 (501) T ss_pred CCeEEEEEEeCC--CCceEEEEEccceeEEEecCCCCCceEEEEEEEEeeecCCcEEEEEEEeCCeEEEEEeCCceeecc Confidence 999999887763 34446899999999999987543 1111 12222111 11100 Q ss_pred -cccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHH-HHHHHhccccceeeecCCCCCchhhHHHHHHH Q lcl|Aclame:pro 192 -FNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDAL-MLYRVVRSVDRRVFYVDVGNVPPDKINEYLTN 269 (533) Q Consensus 192 -~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Edal-VIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~ 269 (533) ..+.+..=.+++|.. .+.|.|-++.++....-+-.+--.+ ..-+..+.|-+-+.-....+.+.. ... T Consensus 228 ~~~~~~g~vPvv~~~n------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~~~~-----~~~ 296 (501) T protein:vir:27 228 VTTHAFGTVPITEFLN------NVDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGMQ-----ASD 296 (501) T ss_pred ccccCCCcccEEEecC------CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccCCcccc-----hhh Confidence 011111112333321 1356666665444444333322211 122233333322221111111100 000 Q ss_pred HHHHhhhceeeccCCCeeecccccchhhhHHhhhhccccc----CCCcceeeecCCC-CCChH-HHHHHHHHHHHHhcCC Q lcl|Aclame:pro 270 IAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRG----DRRAVEIDILQGS-KVDLA-EDVEYMLNRLISALKV 343 (533) Q Consensus 270 im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~----g~~gtEi~TLpG~-nlg~i-~Dv~Yf~~kLy~aL~V 343 (533) +.+. ++ +++.--+ ++.+..+..|-.. +...+ .-++-+.+.++.-.++ T Consensus 297 -~~~~--~~------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~ 349 (501) T protein:vir:27 297 -MKRT--RL------------------------MQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNI 349 (501) T ss_pred -hhhc--Cc------------------------eeecccccccCCCCCcceeeeeccCCHHHHHHHHHHHHHHHHHHhCC Confidence 0000 00 1111000 1112233333211 21111 2267778889999999 Q ss_pred CeeeccCCCCccchhhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--hh-----ccCCCccc---eeEEecCCcHHHHHH Q lcl|Aclame:pro 344 PKAFIGYEGDVNAKNTLAT--QDIKFNNTIKRIQGFFVEELERMV--RM-----NKEFADQD---FRLVMNRSNSIVEGE 411 (533) Q Consensus 344 P~srl~~~~~~gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--il-----k~i~t~ee---w~~~f~~dn~f~E~k 411 (533) |---.+.. .|+.+..+. .......-+.+.++.|...|++-+ |+ ++.....+ ..+.|.+.-.-.+.. T Consensus 350 p~~~~~~~--~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~v~f~~~~p~n~~e 427 (501) T protein:vir:27 350 PDMSDTNF--SGNTSGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESLLKITFTPNLPKSLNE 427 (501) T ss_pred cccCcccc--ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCCCCCcCHHH Confidence 95333211 133333333 222233456666666776655432 22 22222333 357786544322322 Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchh-hhcCccCCcccccCCC Q lcl|Aclame:pro 412 RFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPA-DFLGERGSPIESPRGR 490 (533) Q Consensus 412 e~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 490 (533) .++++..+.+.++++++++.+-..+| -.++-++|++|..+..+.... ... .+.|...+ T Consensus 428 -------~ad~~~kl~g~iS~et~l~~l~~v~D-~~~E~eri~~E~~e~~~~~~~-----~~~~~~~~~~~d-------- 486 (501) T protein:vir:27 428 -------QVSILTGLGGQVSQETALSLSGLVES-PNEELDKINKEVSEIDFKGYS-----NDFNEHVGKYTD-------- 486 (501) T ss_pred -------HHHHHHHHhccCcHHHHHHhCCCCCC-HHHHHHHHHHHHHhhhHhhhc-----CccccccccccC-------- Confidence 33455556677999999987655554 333445566654422211000 000 00011111 Q ss_pred cccccCCCCCccCCCccCcCcccC Q lcl|Aclame:pro 491 TEFDFGTEGGEELGGELNLGGAFE 514 (533) Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~ 514 (533) ...+.+++ +-..|.+ T Consensus 487 --------~~~~~~~d-~~e~~~~ 501 (501) T protein:vir:27 487 --------EVKETHTD-DFERAYE 501 (501) T ss_pred --------CCCCCccc-cccccCC Confidence 00000000 0001111 No 218 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=95.41 E-value=0.0021 Score=35.23 Aligned_cols=432 Identities=13% Similarity=0.061 Sum_probs=159.2 Q ss_pred hhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCcc-ccchhhcccccCccc--cchHHHHHHHHHHhhcChhHHHHH Q lcl|Aclame:pro 8 KKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHP-FATAGYASRFYGGIE--FNRFFLYDMYDRMDYTDPLISTVL 84 (533) Q Consensus 8 ~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~-~~~~~~~~~~ygg~~--~n~~~li~~YR~m~~~~PEV~~AI 84 (533) .+ -...+.+...+..+++..-. ..|.. ... ....-....+|-|.- .++...-+.+...-..++-..-+| T Consensus 1 ~~---~~~~~~~~~~~~~~~~~~i~---~~i~~--~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~ki~~n~~~~Iv 72 (499) T protein:vir:10 1 MA---VVIDKDLLDDVNEPNIEAIN---YAIRE--LQNRKKRLDKLSDYYNGKQEIEKHEFDNATVEAANVMVNHAKYIT 72 (499) T ss_pred Cc---cchhhhHHhhhhcCCHHHHH---HHHHH--HHHHHHHHHHHHHHhccccchhcCCcCcCCCCcceeecchHHHHH Confidence 00 00001111111110000000 00000 000 000000111222210 000000000000000123334444 Q ss_pred HHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCC------------- Q lcl|Aclame:pro 85 DIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSD------------- 151 (533) Q Consensus 85 d~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k------------- 151 (533) +..++..+ +.|+.+..++.+..+ .+..+..--+|+.+..+.++..++.|+.|.+..++... T Consensus 73 ~~~~~~l~-----g~p~~~~~~~~~~~~-~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~~~~~~~~ 146 (499) T protein:vir:10 73 DMNVGFMT-----GNPVKYVAEKGKNID-DILEVFNQIDIHKHDIELEKDLSVFGYGYELLYLKKTDPISVRDELGNEKL 146 (499) T ss_pred HHHhhhhc-----ccCceeecCChhHHH-HHHHHHhhcCHhHHHHHHHHHHHhcCceEEEEEeccccccccccccccccc Confidence 44443332 456666665432222 22333344479999999999999999999988775311 Q ss_pred --CCeeeeEEcCcceeeEEeeccCcE-------EEE--------------Eeccccee--cccCCc------------cc Q lcl|Aclame:pro 152 --GTIEKFQVVSPYIFSKRYNPETDT-------WYY--------------VITDVYRN--VVSGYF------------NE 194 (533) Q Consensus 152 --~gI~elr~ldP~~ik~v~d~~g~~-------e~y--------------~y~~~~~~--~~~~~~------------~~ 194 (533) ..-..+..+||+.+-++++..++. +|+ +|++...+ ...+.. .+ T Consensus 147 ~~~~~~~~~~v~p~~~~~v~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~ 226 (499) T protein:vir:10 147 TPNTELKIEVIDPRATVVVCDDTVEHDPLFAVFTQEKKDLEGNTNGYSITVYMPQRIVEYRTKTTMEVSANDPIVYDGEN 226 (499) T ss_pred ccccceEEEEEcccceEEEecCCCCcceEEEEEEEEEeecCCCceEEEEEEEeCCeEEEEEecCCccccCcceecccccC Confidence 012357889999988887655432 111 12221111 000000 00 Q ss_pred ccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHH-HHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHH Q lcl|Aclame:pro 195 DIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLM-EDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQ 273 (533) Q Consensus 195 ~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~-EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~ 273 (533) .+..=.+++|.. ...|.|-++.++.....|-.+ =+....-+-...|-+-+.-.+.+.. + +- T Consensus 227 ~~g~vPvv~~~n------~~~~~~d~e~v~~liD~~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~---~------~~--- 288 (499) T protein:vir:10 227 LFGAVPIIEFRN------NEERQGDFEQLISLIDAYNLLQTDRISDKEAFVDALLVTFGFGLGDD---K------DD--- 288 (499) T ss_pred CCCccceEEecC------CCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccccc---c------ch--- Confidence 111112333322 124556555544444433321 1222222333333333322222110 0 00 Q ss_pred hhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC-CCCCh-HHHHHHHHHHHHHhcCCCeeeccCC Q lcl|Aclame:pro 274 YKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG-SKVDL-AEDVEYMLNRLISALKVPKAFIGYE 351 (533) Q Consensus 274 ~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG-~nlg~-i~Dv~Yf~~kLy~aL~VP~srl~~~ 351 (533) ...+..+.+.--.+..|..+++|-. .+... ..-++-+.+.+|+-.++|---.+ T Consensus 289 -----------------------~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~-- 343 (499) T protein:vir:10 289 -----------------------IQRLKRGAIEAPPREEGADIEWLTKSFDETQVNLLSQSIENDIHKISYVPNMNDE-- 343 (499) T ss_pred -----------------------hhhhhhcceeccCCCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCcccCCch-- Confidence 0111111111112222334555532 24432 23477888999999999852221 Q ss_pred CCccchhhhhHHHHHHHH---HHHHHHHHHHHHHhhhh--hh---ccCCCccce---eEEecCCcHHHHHHHHHHHHHHH Q lcl|Aclame:pro 352 GDVNAKNTLATQDIKFNN---TIKRIQGFFVEELERMV--RM---NKEFADQDF---RLVMNRSNSIVEGERFAVIEQRI 420 (533) Q Consensus 352 ~~~gr~~eI~rde~kF~k---fI~rLr~~F~~~l~~qL--il---k~i~t~eew---~~~f~~dn~f~E~ke~ei~~~R~ 420 (533) ...|..|..+.. .+|.. -+.+.++.|...|++-+ |+ +..-...+| .+.|.+.---.+ .+.+ T Consensus 344 ~~~gn~Sg~Al~-~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~d~~~i~i~f~~~~p~n~-------~e~~ 415 (499) T protein:vir:10 344 KFMGNVSGEAMK-FKLFGLENLLSIKQRYFFDGLRRRLKLIQTIVNIKGANDDASGCKISLVANIPSNL-------SDVV 415 (499) T ss_pred hhcccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCCCH-------HHHH Confidence 112333444331 22333 34444455665554432 21 111123334 677765444333 3334 Q ss_pred HHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCC Q lcl|Aclame:pro 421 GIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGG 500 (533) Q Consensus 421 ~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (533) ++++.+..-++++++.+.+-..+| -.++-+.|++|..+..... .....+...++.+.+ +...+++++ T Consensus 416 ~~~~kl~g~iS~et~~~~l~~v~d-~~~E~~ri~~E~~~~~~~~--------~~~~~~~~~~~~~~~----~~~~~~~~~ 482 (499) T protein:vir:10 416 NNVKNADGIIPRKYTYSWLPDVDN-PQDVIDEMNQQDAETIKKN--------QEALRGQDPDRLELE----DKQDDSSEN 482 (499) T ss_pred HHHHHHhccCChHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHH--------HhhhccCCCCCCCCC----CCCcccCCC Confidence 444455567999999977555544 2222344444432111000 000111111111111 111111111 Q ss_pred ccCCCccCcCcccCCchhhcCCcccCC Q lcl|Aclame:pro 501 EELGGELNLGGAFEEFEEETGGGEEEL 527 (533) Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~g~~~~~~ 527 (533) ..-+|..|.++ |.+.|. T Consensus 483 ~~~~~~~~~~~----------~~~~~~ 499 (499) T protein:vir:10 483 DKEAGSNHNQS----------HRTRAV 499 (499) T ss_pred CCCCccccccC----------CCCCCC Confidence 11111111111 333333 No 219 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=95.13 E-value=0.0027 Score=34.66 Aligned_cols=418 Identities=11% Similarity=0.085 Sum_probs=171.4 Q ss_pred CCCcchhhhhhhHHHHHH-hhccccccc-CcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcCh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTN-FLSPMYGMG-APHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDP 78 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~-~~~~~~s~~-~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~P 78 (533) +-+++.+-..+=..+-+. +....-.+. ..+-..|.+.+.-. .+.. ... .+.. | . ++ .++ T Consensus 16 ~~~~~~l~~~~i~~li~~~~~~~~~r~~~l~~YY~g~~~~i~~--~~~~----~~~--~~~~-~-------~-ki--~~n 76 (506) T protein:vir:94 16 QESLENLTPNKIMKFITHHFNYQRPRLEMLDDYYQGYNLKILD--KQSR----RHE--DGKA-D-------H-RA--THS 76 (506) T ss_pred ccchhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc--cccc----ccc--ccCC-c-------c-ee--ecc Confidence 111222222111111000 000000000 01112333221110 0000 000 0001 1 1 13 256 Q ss_pred hHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeE Q lcl|Aclame:pro 79 LISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQ 158 (533) Q Consensus 79 EV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr 158 (533) -+.-+|+..+...+ +.|+.+..++ +-.++....+.+--+|+....+.++.+++.|+.|++...|. +|-..+. T Consensus 77 ~~~~Iv~~~~~~l~-----G~p~~~~~~d-~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~de--d~~~~i~ 148 (506) T protein:vir:94 77 FAKYIADFQTSYSV-----GNPINVKLPD-DGSNSGFDTFNKANDVDAENYDLFLDMSRYGRAYEYVYRGE--DNEEHLA 148 (506) T ss_pred hHHHHHHHhhhhhc-----ccCceeecCc-chHHHHHHHHHhccCHhHHHHHHHHHHHhcCeEEEEEEecC--CCeeEEE Confidence 77888888886654 4567776654 22344444555555899999999999999999999888763 5666799 Q ss_pred EcCcceeeEEeeccCc--EE----EE------------------Eeccccee--cccCCc-------ccccCcccEEEEe Q lcl|Aclame:pro 159 VVSPYIFSKRYNPETD--TW----YY------------------VITDVYRN--VVSGYF-------NEDIPEEDVIHFS 205 (533) Q Consensus 159 ~ldP~~ik~v~d~~g~--~e----~y------------------~y~~~~~~--~~~~~~-------~~~~~~~dvi~~~ 205 (533) .+||+.+-++++..+. .. +| +|+..... .+.... .+.+..=.+++|. T Consensus 149 ~~~p~~~~~v~dd~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~yt~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~ 228 (506) T protein:vir:94 149 KLDPLDTFVIYSTDVDPKPIMAVRYHQIELVDDNQVSTINYVPETWTADTYTLYNPTPIMGKMQVDTTKPITTFPVVEFK 228 (506) T ss_pred EEcccceEEEecCCCCCceEEEEEEEeeeeccCCceeEEEEEEEEEeCceEEEeccccCccceeccccccCCccceEEec Confidence 9999999999876543 11 11 12222111 111100 0111111233332 Q ss_pred cCcccCcccccchhHHHHHHHH--------HHHHHHHHHHHHHHHhcccc-ceeeecCC----------CC-CchhhHHH Q lcl|Aclame:pro 206 HKIDTNFFPYGRSYLESARAIW--------NQLRLMEDALMLYRVVRSVD-RRVFYVDV----------GN-VPPDKINE 265 (533) Q Consensus 206 ~~~~~d~~~~g~s~L~~Aik~~--------NqLrm~EdalVIyRi~RAPe-Rr~fyidv----------Gn-lp~~kAeq 265 (533) -+ ..|.|-++..+... +....+++....+++..+-. ....-.+. |+ .......+ T Consensus 229 n~------~~~~sd~e~~~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (506) T protein:vir:94 229 NS------NFRLGDFENVLPLIDLYDAAQSDTANYMTDLNEAMLIIQGDIDTLFEGSDMMNTIDPNDEDAMAKLAKDKLE 302 (506) T ss_pred CC------CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCccccccchhccccccccccccccccccchhH Confidence 11 12334344333222 22334455444444443311 11111110 00 01111111 Q ss_pred HHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCc----ceeeecCC-CCCCh-HHHHHHHHHHHHH Q lcl|Aclame:pro 266 YLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRA----VEIDILQG-SKVDL-AEDVEYMLNRLIS 339 (533) Q Consensus 266 y~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~g----tEi~TLpG-~nlg~-i~Dv~Yf~~kLy~ 339 (533) .+..+ .+ +++ ++++-..+..| ..+..|-- .++.. -.-++-+.+.+|+ T Consensus 303 ~~~~~-~~--~~~------------------------~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~ 355 (506) T protein:vir:94 303 LIKEM-KD--ANM------------------------LLLKSGMTVNGTQTSVDAKYINKTYDVVGSEAYKKRVAGDIHK 355 (506) T ss_pred HHhhh-hh--cCe------------------------eeecccccccCccccccceeeeecCCHHHHHHHHHHHHHHHHH Confidence 11111 11 111 11221111111 22222211 12221 2337778899999 Q ss_pred hcCCCeeeccCCCCccchhhhhH--HHHHHHHHHHHHHHHHHHHHhhhh--hh-----ccCCCccce---eEEecCCcHH Q lcl|Aclame:pro 340 ALKVPKAFIGYEGDVNAKNTLAT--QDIKFNNTIKRIQGFFVEELERMV--RM-----NKEFADQDF---RLVMNRSNSI 407 (533) Q Consensus 340 aL~VP~srl~~~~~~gr~~eI~r--de~kF~kfI~rLr~~F~~~l~~qL--il-----k~i~t~eew---~~~f~~dn~f 407 (533) ..++|-- ..+...|..+..+. -+..-..-+.+.++.|.+.|+.-+ |+ ++.....+| ++.|...--- T Consensus 356 ~s~~p~~--~~~~~~~n~Sg~Aik~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~ 433 (506) T protein:vir:94 356 FSHTPDL--TDENFASNSSGVAMQYKVLGTVELASTKRRMFERGLYARYQIISDIENSIHGDWTFDPQELTFTFRDNLPA 433 (506) T ss_pred HhCcccc--ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccceEEeCCCCCc Confidence 9999952 21121233333322 222223455666666776555432 21 233233334 5777655443 Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCccCCccccc Q lcl|Aclame:pro 408 VEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESP 487 (533) Q Consensus 408 ~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (533) .+...++ ++..+.+.+++.++...+ -.+++..++.+.|++|........ ......+....+ T Consensus 434 d~~e~a~-------~~~kl~g~iS~et~~~~l-p~v~d~~~E~~ri~~E~~~~~~~~-------~~~~~~~~~~~~---- 494 (506) T protein:vir:94 434 DNISQIK-------ALVQAGATLPQKYLYQQL-PGVTNPQDIVDMMKEQSANGDYSF-------DQNGVISNDGQT---- 494 (506) T ss_pred CHHHHHH-------HHHHHhccCChHHHHHhC-CCCCCHHHHHHHHHHHHHHHhhcc-------hhhcCCCcccCc---- Confidence 3443333 344455679999988865 444444455566666644221110 000001111111 Q ss_pred CCCcccccCCCCCccCCCccCcC Q lcl|Aclame:pro 488 RGRTEFDFGTEGGEELGGELNLG 510 (533) Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~ 510 (533) .+...+.+++ ++ T Consensus 495 -----~~~~~~~~~e------~~ 506 (506) T protein:vir:94 495 -----NTTATQTDEE------VR 506 (506) T ss_pred -----cccccccccC------CC Confidence 0011111111 11 No 220 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=94.89 E-value=0.0032 Score=34.23 Aligned_cols=357 Identities=13% Similarity=0.065 Sum_probs=141.4 Q ss_pred HHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeecCC Q lcl|Aclame:pro 17 TNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNE 96 (533) Q Consensus 17 ~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~d~ 96 (533) =+|..++++|+.-+...+.+ + ..+ .. ++ + .+.+.+-|.+||+.|++.+-. T Consensus 1 M~~f~k~~~~~~~~~~~~~~--------~-~~~-~~----~~---~----------~~~~~~~v~~~v~~ia~~iA~--- 50 (378) T protein:vir:85 1 MNLFGKVVSFSRGKLNNDTQ--------R-VTA-WQ----NE---A----------VEYTSAFVTNIHNKIANEITK--- 50 (378) T ss_pred CchhhhhhhhhhcccccCCc--------c-eee-ee----cc---c----------hhhhhHHHHHHHHHHHHhHhh--- Confidence 11222233443211111111 0 000 00 01 1 011235688899999876321 Q ss_pred CCceeeeeccccc-c----cHH-HHHHHHHHhhh--------HHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCc Q lcl|Aclame:pro 97 NGNIVDVVTKDIE-L----AKA-ILSYLDYVINI--------EKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSP 162 (533) Q Consensus 97 ~~~~v~v~l~~~e-~----s~s-i~~~i~~ll~f--------~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP 162 (533) .|+.+-..+.+ . ... ....+.++|+. ....+..++.++.+|+.|+.++.++. T Consensus 51 --lp~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~------------ 116 (378) T protein:vir:85 51 --VEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSE------------ 116 (378) T ss_pred --CceeEEEEeccccccccccccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCC------------ Confidence 11111110000 0 001 11234455543 34667788889999999987665432 Q ss_pred ceeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 163 YIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRV 242 (533) Q Consensus 163 ~~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi 242 (533) .|+..+..|.. .+..+.+.+++|+... +... -+++.++.|+.... .++. T Consensus 117 ---------~g~~~~~~~~~---------~~~~~~~~dvih~~~~-~~~~--~~~~~~~~a~~~~~------~~~~---- 165 (378) T protein:vir:85 117 ---------TGELLDLLFAN---------DKKEYKPEELVRLVSP-FYIN--EDTSILDNALASIQ------TKLE---- 165 (378) T ss_pred ---------CceEEEEEecC---------CCEEEcccceEEEecC-cCcc--chhhHHHHHHHHHH------HHHh---- Confidence 22222332321 1233557899988632 2222 23466776654322 2211 Q ss_pred hccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCCC Q lcl|Aclame:pro 243 VRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS 322 (533) Q Consensus 243 ~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG~ 322 (533) .+--+-++.++ +.+.+.++++....+...+++..--+. .|.+ + .| ..|.+++-|.=. T Consensus 166 -~~~~~g~l~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~-~g~~---------~-vl----------~~g~~~~~l~~~ 222 (378) T protein:vir:85 166 -QGKLRGLLKIN-AFLDIDNTQEYREKALATIKNMQEGSS-YNGL---------T-PV----------DNKTEIVELKKD 222 (378) T ss_pred -cCCcceEEEeC-CcCCHHHHHHHHHHHHHHHHHhhcccc-cccc---------e-ec----------CCCceEEeccCC Confidence 11112233332 345555555554444433433221111 1211 1 11 124455555321 Q ss_pred -CCChHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhcc-----CCCcc Q lcl|Aclame:pro 323 -KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNK-----EFADQ 395 (533) Q Consensus 323 -nlg~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rde~kF~kf-I~rLr~~F~~~l~~qLilk~-----i~t~e 395 (533) ..-++..++|.++.+.+++|||...|.. +....+.+-|.++ |.-+-.++++.|.+.|+... ....- T Consensus 223 ~~~~~~~~~~~~~~~Ia~~fgVPp~~l~~-------s~~e~~~~~f~~~tL~P~~~~ie~~l~~kLl~~~er~~~~~~~~ 295 (378) T protein:vir:85 223 YSVLNKDEIELIKSELLTGYFMNENILLG-------TATQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLY 295 (378) T ss_pred hhhhhHHHHHHHHHHHHHHhCCCHHHhcC-------CchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhccc Confidence 2224667888889999999999999852 1111122234443 33334556677777665321 11111 Q ss_pred ceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccchhh Q lcl|Aclame:pro 396 DFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPAD 475 (533) Q Consensus 396 ew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~ 475 (533) .+++.|..+. +.... +..|.+.+..+ -+..-||..|.-.. ++ ++|-++-|+=..+. T Consensus 296 ~~~~~f~~~~----l~~~d-~~~~~~~~~~~----------~~~G~~T~NE~R~~-----lg---l~p~~gGD~~~~~~- 351 (378) T protein:vir:85 296 YERIIVDNQL----FKFAT-LKELIDLYHEN----------INGPIFTQNQLLVK-----MG---EQPIEGGDIYIANL- 351 (378) T ss_pred cceeeecchh----hhhcC-HHHHHHHHHHH----------HhCCCcCHHHHHHH-----hC---CCCCCCCCeEeecc- Confidence 1223333222 22111 23455544442 23345675333111 22 22222212111111 Q ss_pred hcCccCCcccccCCCcccccCCCCCccCCCccCcCcccCCchhhcCCccc Q lcl|Aclame:pro 476 FLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEE 525 (533) Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 525 (533) -..|+..+...+..+ .+...++| +.|| T Consensus 352 ----N~~~~~~~~~~~~~~----~~~~~~~e---------------~~n~ 378 (378) T protein:vir:85 352 ----NAVAVKNLSDLQGSR----KDVASTDE---------------TNNQ 378 (378) T ss_pred ----cccccccchhhcCcc----CCCCCCCC---------------CCCC Confidence 011111111110011 01111111 0011 No 221 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=94.79 E-value=0.0035 Score=34.06 Aligned_cols=429 Identities=11% Similarity=0.054 Sum_probs=180.7 Q ss_pred cchhhhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccc-hhhcccccCccccc-------hHHHHHHHHHHhh Q lcl|Aclame:pro 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFAT-AGYASRFYGGIEFN-------RFFLYDMYDRMDY 75 (533) Q Consensus 4 ~~~w~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~-~~~~~~~ygg~~~n-------~~~li~~YR~m~~ 75 (533) |.-|.+.-... .++..++..-+..+- .....|+.+ ..... .......|.|.... .....+.+..+ T Consensus 1 m~~~~~~k~~~--~k~~~~~~~~~~~~i-~~~~~i~~~--~~~~~~i~~~~~~y~g~~~~~~~~~~~~~~~~~~~~sl-- 73 (522) T protein:vir:47 1 MSLFQKVKDFF--SRGRYYMQTSNLNSI-LEHPKIAVT--QEEYDRIKRNLVYYQSKWDDVQYKNTDGDIKSRPMNHL-- 73 (522) T ss_pred CchHHHHHHHH--HHHHHHhhcccchhc-cccCCCCCC--HHHHHHHHHHHHHhcCCcccccccccCcchhcccceec-- Confidence 44555443321 122222221111000 000111111 11000 00111122221100 00000111100 Q ss_pred cChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCee Q lcl|Aclame:pro 76 TDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIE 155 (533) Q Consensus 76 ~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~ 155 (533) +--..++++.++-++ + .++++..++ +..++..+.+++--+|...+.+.+-.+..-|.++|...+|. ++| T Consensus 74 --nl~~~i~~~~A~lv~----~-e~~~i~v~d-~~~~~~l~~~l~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~--~~~- 142 (522) T protein:vir:47 74 --PIARTASKKIASLVY----N-EQATITTKN-EILQKFLDDMLTNDRFNKNFERYLESCLALGGLAMRPYIDG--DKV- 142 (522) T ss_pred --chHHHHHHHHhhhhc----C-CcceeecCC-hHHHHHHHHHHhhcchHHHHHHHHHHhhccCCEEEEEEEcC--Cce- Confidence 223444555554443 2 233444443 22233333344444699999999999999999999998874 344 Q ss_pred eeEEcCcceeeEE-eeccCcE----------------EEEE------ec--------------ccce----ecc--cC-- Q lcl|Aclame:pro 156 KFQVVSPYIFSKR-YNPETDT----------------WYYV------IT--------------DVYR----NVV--SG-- 190 (533) Q Consensus 156 elr~ldP~~ik~v-~d~~g~~----------------e~y~------y~--------------~~~~----~~~--~~-- 190 (533) .+.+++|.++-++ ++..+.. .||. +. .+.. +.+ +. T Consensus 143 ~i~~v~ad~~~P~~~~~~~~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~l 222 (522) T protein:vir:47 143 RVAFIQAPVFFPLESNTQDVSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVL 222 (522) T ss_pred EEEEEcCCceEEEEEcCCceEEEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCccc Confidence 6888999888775 3333221 1221 00 0100 000 00 Q ss_pred Cc---------ccccCc---------ccEEEEec---CcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccce Q lcl|Aclame:pro 191 YF---------NEDIPE---------EDVIHFSH---KIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRR 249 (533) Q Consensus 191 ~~---------~~~~~~---------~dvi~~~~---~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr 249 (533) +. -..+++ --+++|.. +..+...|+|+|-+++|+..+.-|-..-+. +.|-.|.=.+| T Consensus 223 G~~v~l~~~~e~~~l~~~~~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~--~~~e~~~g~~~ 300 (522) T protein:vir:47 223 GQRVNLSELDKYKNLEPVTVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDE--FMWEVRMGQRR 300 (522) T ss_pred CccccccccccccCCCCceEeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHH--HHHHHHhccce Confidence 00 001111 12334432 233333579999999988776666544433 34555555566 Q ss_pred eeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccc---cCCCcceeeecCCC-CCC Q lcl|Aclame:pro 250 VFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRR---GDRRAVEIDILQGS-KVD 325 (533) Q Consensus 250 ~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR---~g~~gtEi~TLpG~-nlg 325 (533) +|..+. +++ ...+..+|+.. .... + ---+.+|.+-. .++.+ |+++.-. --+ T Consensus 301 i~v~~~----------~l~---------~~~~~~~g~~~-~~~~--f-d~~~~~f~~~~~~~~~~~~--i~~~~~~ir~e 355 (522) T protein:vir:47 301 VIVPEH----------LTQ---------RQYQRPDGTID-FRPR--F-DVEQNVYMQIGGSSMDAGG--ITDLTSPIRAN 355 (522) T ss_pred eecchH----------Hhc---------cCCCCCCcccc-cccc--c-CcccceEeecCCCCCCCCc--ceeeccccChH Confidence 655211 000 01111222110 0000 0 00001111111 11112 3433211 112 Q ss_pred hHH-HHHHHHHHHHHhcCCCeeeccCCCCc-cchhhhhHHHHHHHHHHHHHHHHHHHHHhh----hh-------hhccCC Q lcl|Aclame:pro 326 LAE-DVEYMLNRLISALKVPKAFIGYEGDV-NAKNTLATQDIKFNNTIKRIQGFFVEELER----MV-------RMNKEF 392 (533) Q Consensus 326 ~i~-Dv~Yf~~kLy~aL~VP~srl~~~~~~-gr~~eI~rde~kF~kfI~rLr~~F~~~l~~----qL-------ilk~i~ 392 (533) +.. =+..+.+.+=...|++.+.|+.+++. .-++||......-..-+.+.|+.+.+.|+. -| ++++ . T Consensus 356 ~~~~~~~~~l~~i~~~~gls~~tf~~~~~~~kTAtEi~s~~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~~-~ 434 (522) T protein:vir:47 356 DYILAISEGLKLFEMQIGVSSGMFTFDGQGMKTATEIVSENSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGVYSG-E 434 (522) T ss_pred HHHHHHHHHHHHHHHHhCCCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C Confidence 221 26777777888899999999876553 236677666655555677777666554432 22 1122 2 Q ss_pred CccceeEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHhcCChhhh-HHHHHHhhhcccCCCCCcccccc Q lcl|Aclame:pro 393 ADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRED-WIYSNILQIPYDLK-PQEEVAEAAGGGGLFDTGGFGEE 470 (533) Q Consensus 393 t~eew~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~-~i~k~il~~tde~~-~q~~~i~~E~~~~~~~~~~~~~~ 470 (533) ..++..+.+..+....+-+++++-. .+++.+. ..+++. |||+ ...+|||+. ++-+.|++|.....+.+.+.. T Consensus 435 ~~~~~~i~v~f~D~i~~D~~~~~~~-~~~~v~a--G~~s~e~~i~~-~~g~~eeea~~el~ri~~E~~~~~~~~~~~~-- 508 (522) T protein:vir:47 435 IPELDDISVNLDDGVFTDRHAELDY-WAKMVAA--GFSTKKRAIGK-TLNISGVEAEKELNAINSELLPMNDAELAIY-- 508 (522) T ss_pred CCCcceeEEEcCCCCCCCHHHHHHH-HHHHHhc--CCCCHHHHHHh-cCCCChHHHHHHHHHHHHhhccCCCCCCCCC-- Confidence 2344444444444333333333322 2222222 456765 5665 567898765 445667777553333222111 Q ss_pred cchhhhcCccCCcccccCCCcccccCCCCCccCCCccCcCc Q lcl|Aclame:pro 471 TTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGG 511 (533) Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (533) +.++ +.++.||| +| T Consensus 509 -------------------~~~~-----~~~~~~d~---~~ 522 (522) T protein:vir:47 509 -------------------GMHD-----QNEEKADD---KG 522 (522) T ss_pred -------------------CCCC-----cccccCCC---CC Confidence 0011 11111111 11 No 222 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=94.74 E-value=0.0036 Score=33.96 Aligned_cols=363 Identities=11% Similarity=0.024 Sum_probs=192.7 Q ss_pred hhHHHHHHhhcccccccCccc------CCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChhHHHHH Q lcl|Aclame:pro 11 NEAVNFTNFLSPMYGMGAPHG------AGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVL 84 (533) Q Consensus 11 de~~~~~~~~~~~~s~~~p~~------~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AI 84 (533) =|...=+.|..++... .|++ .+|.+.++- . +.. -..++-..||. . -+-+.-+| T Consensus 1 ~~~~~i~~L~~~~~~~-~~r~~~~~~yY~g~~~~~~---------------~-~~~-~p~~~~~~~~~-v--~nw~~~iV 59 (409) T protein:vir:16 1 MTEKGIGYLRFKLSVH-KRRAEMRYEQYAMKHVDRF---------------K-GIT-IPQALSQQYRS-I--LGWCAKGV 59 (409) T ss_pred CCHHHHHHHHHHHHHH-hHHHHHHHHHHhccCchhh---------------c-chh-hhHHHHHHHhh-h--cChhHHHH Confidence 1111112222222111 1111 222221110 0 000 01233344552 2 24677788 Q ss_pred HHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcce Q lcl|Aclame:pro 85 DIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYI 164 (533) Q Consensus 85 d~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~~ 164 (533) +.+++-+.+-++. ..+ +-...+...=+|+.+..+.++.-+++|+.|.-..-+ .+|-..++.++|+. T Consensus 60 ds~a~rl~~~Gf~-------~~d-----~~l~~i~~~N~ld~~~~~~~~~al~yG~sf~~v~~~--~dg~~~i~~~sP~~ 125 (409) T protein:vir:16 60 DSLADRLVFREFE-------NDD-----FTVNEIFEENNPDIFFDSTVLSALIASCSFTYISKG--ENDAVRLQVIEATN 125 (409) T ss_pred HHhHhhccccccc-------Ccc-----hHHHHHHHhcChhHHHHHHHHHHHHhCceeEEEecC--CCCceEEEEEcccc Confidence 8887765554442 111 113344555678999999999999999988765433 35556789999999 Q ss_pred eeEEeeccCcEE--EE---------------Eecccce--ecccCC----cccccCcccEEEEecCcccCcccccchhHH Q lcl|Aclame:pro 165 FSKRYNPETDTW--YY---------------VITDVYR--NVVSGY----FNEDIPEEDVIHFSHKIDTNFFPYGRSYLE 221 (533) Q Consensus 165 ik~v~d~~g~~e--~y---------------~y~~~~~--~~~~~~----~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~ 221 (533) +..++|..+.+. .| +|.+... ...... ..+.+..=-+++|.++--.+ .++|.|-|. T Consensus 126 ~~~i~D~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~~~-~~~G~seI~ 204 (409) T protein:vir:16 126 ATGIIDPITGLLTEGYAVLERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGNPLLVPIIHRPDAV-RPFGRSRIT 204 (409) T ss_pred eEEEeecccccceeeeEEEEecCCCceEEEEEEecCcEEEEEecCccccceecCCCCcceEEeccccccc-ccCCccccc Confidence 988887765431 11 1211110 000001 11222222477777543222 367887663 Q ss_pred H-HHHHHHH-HHHHHHHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhH Q lcl|Aclame:pro 222 S-ARAIWNQ-LRLMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESI 299 (533) Q Consensus 222 ~-Aik~~Nq-Lrm~EdalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~sm 299 (533) . .+...+- -|.+.+.++.-...=.|.|-++=+|-...|..+ .+..+. T Consensus 205 ~~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~d~~~~~~----~~~~~~--------------------------- 253 (409) T protein:vir:16 205 RSGMYWQSNAKRTLERADVTAEFYSFPQKYVTGLSDDAEPMET----WKATVS--------------------------- 253 (409) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcChhheeEecCCCCCccch----hhhhhh--------------------------- Confidence 3 3333333 356667777777777777777655432112111 111111 Q ss_pred HhhhhcccccCCCcceeeecCCCCCCh-HHHHHHHHHHHHHhcCCCeeeccCCCCc-cchhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 300 LKDYFIPRRGDRRAVEIDILQGSKVDL-AEDVEYMLNRLISALKVPKAFIGYEGDV-NAKNTLATQDIKFNNTIKRIQGF 377 (533) Q Consensus 300 leDywlprR~g~~gtEi~TLpG~nlg~-i~Dv~Yf~~kLy~aL~VP~srl~~~~~~-gr~~eI~rde~kF~kfI~rLr~~ 377 (533) .=..+|.-+.+-+.+|..+++++|+- ++-++-.-+.++..-++|...|+....- +-+..|.-.+....+-+.+-|+. T Consensus 254 -~i~~~~~d~~g~~~~v~q~~~~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~ 332 (409) T protein:vir:16 254 -SMLQFTKDEDGDKPTLGQFTQPSMSPFTEQLRTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRS 332 (409) T ss_pred -HhhccCCCCCCCCceEEecCCCChhHHHHHHHHHHHHHhhhcCCCHHHcccccCchhHHHHHHHHHHHHHHHHHHHHHH Confidence 11335666666778898999887764 4557888888999999999999864431 22345666777888899999999 Q ss_pred HHHHHhhh----hhhccCC--Cccce---eEEecCCcHHHHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHhcCCh Q lcl|Aclame:pro 378 FVEELERM----VRMNKEF--ADQDF---RLVMNRSNSIVEGERFAVIEQRIGIAERL----KGWVREDWIYSNILQIPY 444 (533) Q Consensus 378 F~~~l~~q----Lilk~i~--t~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~~~----~pyvgk~~i~k~il~~td 444 (533) |.+-|+.- +-+.+.. .+++| ++.|. |+. ....-.+.++.+.+..| .++..+..+...+ .+|+ T Consensus 333 fg~~l~~~~rla~~~~~~~~~~~~~~~~~~v~W~-~~~---~~~~~s~a~~aDa~~Kl~~a~~~~~~~~v~~~~~-g~~~ 407 (409) T protein:vir:16 333 LGAGLLNVAYLAACLRDDVPYLREQFSKTKPKWE-PLF---EADASMLSLIGDGAIKLNQAIPEFINKDTIRDLT-GIKG 407 (409) T ss_pred HHHHHHHHHHHHHHHhcCCCccchhhccceEEec-CCC---CcchhhHHHHHHHHHHHHhhcccccchhHHHHhc-cCCC Confidence 98655542 3333332 23455 46664 221 11123344555554443 4566677775544 6665 Q ss_pred hh Q lcl|Aclame:pro 445 DL 446 (533) Q Consensus 445 e~ 446 (533) .. T Consensus 408 ~d 409 (409) T protein:vir:16 408 AE 409 (409) T ss_pred CC Confidence 33 No 223 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=94.72 E-value=0.0037 Score=33.93 Aligned_cols=210 Identities=9% Similarity=0.053 Sum_probs=98.5 Q ss_pred EEeeccCcEEEEEecccceecccCCcccccCcccEEEEec-CcccCcccccchhHHHHHHHHHHHHHHHH-HHHHHHHhc Q lcl|Aclame:pro 167 KRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSH-KIDTNFFPYGRSYLESARAIWNQLRLMED-ALMLYRVVR 244 (533) Q Consensus 167 ~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~-~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed-alVIyRi~R 244 (533) +.+.+.| ..+|++.... ...++....+++++|+|+-. +..++ -+|+|-+..|+..+-.-...+. ..-.|+=- T Consensus 1 ~r~~~dg-~~~y~~~~~~--~~~~g~~~~~~~~eilH~r~~~~~~~--~~Glspi~~a~~~i~~~~aa~~~~~~~f~Ng- 74 (219) T protein:vir:98 1 MRVCKDG-NYKYLMKKSL--YDTKSEIYEYNKNDVIFIKLYDPMQQ--VYGSPDYVGGITSALLNSDATIFRRRYYSNG- 74 (219) T ss_pred CceeecC-eEEEEEecce--ecCCceeEEeccccEEEecCCCCCCC--cceecHHHHHHHHHHHHHHHHHHHHHHHhcC- Confidence 2233334 3556554321 12234456788999999864 32332 3899988887765543222222 11122211 Q ss_pred cccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccC--CCcceeeecCCC Q lcl|Aclame:pro 245 SVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGD--RRAVEIDILQGS 322 (533) Q Consensus 245 APeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g--~~gtEi~TLpG~ 322 (533) |-..-|+++.-+.|-+..+++-.+.+ +.++ |. .|. ..+-++ -.| ..|.+++.|.- T Consensus 75 ~~p~gil~~~~~~l~~e~~~~~~~~~-~~~~---------g~----~n~-~~~~l~-------~~gg~~~G~~~~~~~~- 131 (219) T protein:vir:98 75 AHMGFILYSTDPDMTEEMEDEIAERI-RDSK---------GV----GNF-RSMFVN-------IAGGHPDGLKVIPIGD- 131 (219) T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHH-HHhc---------Cc----ccc-cceeEe-------cCCCCccceeEEEccC- Confidence 11123344443456555444433333 3321 11 111 012111 111 13566665521 Q ss_pred CCChHH---HHHHHHHHHHHhcCCCeeeccCCC-CccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCccce Q lcl|Aclame:pro 323 KVDLAE---DVEYMLNRLISALKVPKAFIGYEG-DVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQDF 397 (533) Q Consensus 323 nlg~i~---Dv~Yf~~kLy~aL~VP~srl~~~~-~~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~eew 397 (533) +..++. =-++-...+-++.+||...++.-. +-+-.+.+.-..+.|.+ -+.-+..++.+.|.+.+. .+++- T Consensus 132 ~~~d~qfle~rk~~~~eIa~~fgVPp~~lG~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~~~-----~~~~~ 206 (219) T protein:vir:98 132 TGQKDEFANIKNISAQDVLTSHRFPPGLSGIIPVNTAGLGDPLKIREAYQADEVLPLQEIIAESINSDYE-----IKSAL 206 (219) T ss_pred CHHHHHHHHHHHhhHHHHHHHhCCCHHHcccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----CCCcc Confidence 222222 233446669999999999997432 22222334445555665 345566667777765533 23334 Q ss_pred eEEecCCcHHHHHHH Q lcl|Aclame:pro 398 RLVMNRSNSIVEGER 412 (533) Q Consensus 398 ~~~f~~dn~f~E~ke 412 (533) ++.|..|+. +=++ T Consensus 207 ~~~F~~~~~--~d~~ 219 (219) T protein:vir:98 207 KVNFKQPEK--RDKN 219 (219) T ss_pred EEeecCccc--ccCC Confidence 556654443 2222 No 224 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=94.58 E-value=0.004 Score=33.71 Aligned_cols=387 Identities=12% Similarity=0.026 Sum_probs=154.3 Q ss_pred hcccccccCcccCCCC-ccc---CCCCCccccchhhcccccCccccchHHHHHHHHHHhh----cC-------------- Q lcl|Aclame:pro 20 LSPMYGMGAPHGAGGS-SMI---PINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDY----TD-------------- 77 (533) Q Consensus 20 ~~~~~s~~~p~~~~ga-s~i---~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~----~~-------------- 77 (533) |..+ +-|-+.--+ ..| ..+ ......- . .. ....-...+.+|+.+.. .| T Consensus 1 ~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~-i-~~----~i~~~~~~~~~~~~~~~Yy~g~~~i~~~~~~~~~~~~ 70 (474) T protein:vir:96 1 MIVI---FWPNEKPYHERVVEQIKPK-YETQEEM-I-IR----LINDHKPKIDDITVGERYYNHDPDVLRLAPKLDNKGE 70 (474) T ss_pred Ceee---ccCCCchhhhhHHHHhhhc-cCChHHH-H-HH----HHHHHHHHHHHHHHHHHHhccCCcchhccchhccccc Confidence 2222 111111111 111 000 0000000 0 00 00000111223333221 11 Q ss_pred ------------hhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHh--hhHHHHHHHHHHHhhcCceeE Q lcl|Aclame:pro 78 ------------PLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVI--NIEKNAYPIIRNMIKYGDMFL 143 (533) Q Consensus 78 ------------PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll--~f~~~~~e~~R~wyvDGr~~~ 143 (533) |-...+++..+...+ +.|+.+..++.+.. +.+.+.+ +++....++++..++.|+.|. T Consensus 71 ~~~~~~~~ki~~n~~~~Ivd~~~~~l~-----g~p~~~~~~d~~~~----~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~ 141 (474) T protein:vir:96 71 IDPLKPDWRMFTNYHQNLVDQKVAYAV-----ANPVTFSSDDDKSL----KTIQEVLNHKWDDKLVDILTAASNKGIEWL 141 (474) T ss_pred ccccccchhcccchHHHHHHhhhhhhc-----ccCceeecCchHHH----HHHHHHHhcCHHHHHHHHHHHHHhcCeeEE Confidence 122222222222211 45677776653332 3333344 788899999999999999999 Q ss_pred EEeecCCCCCeeeeEEcCcceeeEEeecc--CcEE-------------EEEecccc--eecccCCc-------------- Q lcl|Aclame:pro 144 HILEKGSDGTIEKFQVVSPYIFSKRYNPE--TDTW-------------YYVITDVY--RNVVSGYF-------------- 192 (533) Q Consensus 144 ~kiid~~k~gI~elr~ldP~~ik~v~d~~--g~~e-------------~y~y~~~~--~~~~~~~~-------------- 192 (533) +..+|. +|-..+..+||+.+-++++.. ++.. +.+|+... .+...++. T Consensus 142 ~~y~d~--~~~~~i~~~~p~~~~~v~d~~~~~~~~~~vr~~~~~~~~~~~~yt~~~v~~~~~~~~~~~~~~~~~~~~~~~ 219 (474) T protein:vir:96 142 QPYIDE--NGEFKTFRVPAEQAIPIWTNKERDTLKAFIRYYRLDGAERVEYWTDSDVTYYEYQDGILIPDYYHGEEHIQS 219 (474) T ss_pred EEEecC--CCceEEEEEcccceEEEEcCCCCCceEEEEEEEeecCceEEEEEeCCeEEEEEecCCceeeccccccccccc Confidence 887763 455579999999999998753 2211 11122110 01000000 Q ss_pred -------ccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHH-HHHHHHHhccccceeeecCCCCCchhhHH Q lcl|Aclame:pro 193 -------NEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMED-ALMLYRVVRSVDRRVFYVDVGNVPPDKIN 264 (533) Q Consensus 193 -------~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~Ed-alVIyRi~RAPeRr~fyidvGnlp~~kAe 264 (533) .+.+..=.+++|.. .+.|+|-++..+....-|-.+-- ..-.-+..+.|-. ++...... ... T Consensus 220 ~~~~~~~~~~~g~iPvv~~~n------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l---v~~g~~~~--~~~ 288 (474) T protein:vir:96 220 HYYVGNKRVSWGRVPFIPFKN------NPQEMSDLFMYKTIIDAMDKRLSDTQNTFDESTELIY---ILKGYEGQ--DLD 288 (474) T ss_pred cccccccccCCCceeEEEecc------CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccee---eeecCCcc--ccc Confidence 00011111222221 23567767665555554443222 1122233333322 22111100 000 Q ss_pred HHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecCC-CCCChH-HHHHHHHHHHHHhcC Q lcl|Aclame:pro 265 EYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG-SKVDLA-EDVEYMLNRLISALK 342 (533) Q Consensus 265 qy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLpG-~nlg~i-~Dv~Yf~~kLy~aL~ 342 (533) +.... |..+ +++ +++ +.|..++.|-. .++... .-+.-+.+.+|+..+ T Consensus 289 ~~~~~-~~~~--~~i------------------------~~~----~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~ 337 (474) T protein:vir:96 289 EFMRN-LKYY--KAI------------------------NVD----GDGSGVDTIQIEVPVQSSKEYLDMLRDYVIEFGQ 337 (474) T ss_pred chhhh-hhcC--ceE------------------------Eec----CCCCceeEEeecCChHHHHHHHHHHHHHHHHHhC Confidence 00000 1110 000 111 11223333321 233222 336777889999999 Q ss_pred CCeeeccCCCCccchhhhhHHHHHHH---HHHHHHHHHHHHHHhhhh--hhc---cCCCccceeEEecCCcHHHHHHHHH Q lcl|Aclame:pro 343 VPKAFIGYEGDVNAKNTLATQDIKFN---NTIKRIQGFFVEELERMV--RMN---KEFADQDFRLVMNRSNSIVEGERFA 414 (533) Q Consensus 343 VP~srl~~~~~~gr~~eI~rde~kF~---kfI~rLr~~F~~~l~~qL--ilk---~i~t~eew~~~f~~dn~f~E~ke~e 414 (533) +|-.-.. ...|..|.++.. .+++ .-+.+.+..|...|+.-+ |++ ......+..+.|.+.--..+..-+ T Consensus 338 ~p~~~~~--~~~~n~Sg~Al~-~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~~~~~~~~~~~i~i~f~~~~p~~~~e~~- 413 (474) T protein:vir:96 338 GVDFQQD--KFGNSPSGIALK-FMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLNIKVQDVEITFNFNVMVNELEQS- 413 (474) T ss_pred Ccccccc--ccccccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCCCcCHHHHH- Confidence 9954322 212333344331 2222 234455555665554432 222 222334456777544433333222 Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhcCChhhhHHHHHHhhhcccCCCCCcccccccch--hhhcCccCCcccccCCCcc Q lcl|Aclame:pro 415 VIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTP--ADFLGERGSPIESPRGRTE 492 (533) Q Consensus 415 i~~~R~~~~~~~~pyvgk~~i~k~il~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 492 (533) +++.+ .+.+|+.++.+.+-..+| -.++.+.|++|..+.... ..+ +++.+...+ ..++ T Consensus 414 ------~~~~~-ag~iS~et~~~~~~~v~d-~~~E~~ri~~E~~e~~~~-------~~~~~~~~~~~~~d------~~~e 472 (474) T protein:vir:96 414 ------QIGVQ-SQYLSKETVVTNHPWVDD-PVAELERIEQDNIDFNKQ-------LPPLEGDANGRAQD------NESE 472 (474) T ss_pred ------HHHHh-cCCCchHHHHHhCCCCCC-HHHHHHHHHHHHHHHHhc-------ccccccccccccCC------Cccc Confidence 23333 368999999887555554 233445565554321111 111 001111111 1111 Q ss_pred cc Q lcl|Aclame:pro 493 FD 494 (533) Q Consensus 493 ~~ 494 (533) ++ T Consensus 473 ~~ 474 (474) T protein:vir:96 473 TN 474 (474) T ss_pred CC Confidence 11 No 225 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=94.30 E-value=0.0048 Score=33.30 Aligned_cols=425 Identities=10% Similarity=0.003 Sum_probs=158.7 Q ss_pred HhhcccccccCcccCCCC---cccCCCC--CccccchhhcccccCccc--cchHHHHHHH---HHHhhcChhHHHHHHHh Q lcl|Aclame:pro 18 NFLSPMYGMGAPHGAGGS---SMIPINM--YHPFATAGYASRFYGGIE--FNRFFLYDMY---DRMDYTDPLISTVLDII 87 (533) Q Consensus 18 ~~~~~~~s~~~p~~~~ga---s~i~~~~--~~~~~~~~~~~~~ygg~~--~n~~~li~~Y---R~m~~~~PEV~~AId~I 87 (533) -+...++.+-.++..... ..|.... ..+... ....+|-|.- .+.......+ +++. ++-+.-+|+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~--~~~~yy~g~~~i~~~~~~~~~~~~~~ki~--~n~~~~iv~~~ 76 (489) T protein:vir:99 1 MLQEDFEAIDYESKLWIDQLKNYISRFKAEQLERLK--ELKRYYLGDNNIKYRPAKTDKYAADNRIA--SDFAKYITVFE 76 (489) T ss_pred CCccceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHhcccCccccccccccccCCcceee--cchHHHHHHHH Confidence 112222222111111000 0000000 000000 0011111110 0000000000 0121 34455555555 Q ss_pred hceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecC--CCCCeeeeEEcCccee Q lcl|Aclame:pro 88 ADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKG--SDGTIEKFQVVSPYIF 165 (533) Q Consensus 88 vneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~--~k~gI~elr~ldP~~i 165 (533) +...+ +.++.+..++.+ .++....+.+.-+|+....+..+.+++.|+.|....+.+ ...|-..+..++|+++ T Consensus 77 ~~~l~-----g~~~~~~~~d~~-~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~~~~i~~~~p~~~ 150 (489) T protein:vir:99 77 QGYML-----GVPVEYKNENKD-LQAAIDLMSVRNNEDYHNVKIKTDLSIYGRAYELLTVEKIDDKKTEVKLYQLPAEQT 150 (489) T ss_pred hhhhc-----cCCceeecCChh-HHHHHHHHHhhcChhHHHHHHHHHHhhCCeEEEEEeeccCcCCCcceEEEEEcccce Confidence 54433 456666665432 233333444445899999999999999999998877643 2356667999999999 Q ss_pred eEEeeccCc--EEE----E--------------Eeccccee--cccCCc----------ccccCcccEEEEecCcccCcc Q lcl|Aclame:pro 166 SKRYNPETD--TWY----Y--------------VITDVYRN--VVSGYF----------NEDIPEEDVIHFSHKIDTNFF 213 (533) Q Consensus 166 k~v~d~~g~--~e~----y--------------~y~~~~~~--~~~~~~----------~~~~~~~dvi~~~~~~~~d~~ 213 (533) -++++..+. ..+ | +|+....+ ...... .+.+..=.+++|..+ T Consensus 151 ~~v~dd~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~------ 224 (489) T protein:vir:99 151 FVIYDDTYQRNSLMAVHFYDIDYGSGKRKQIIKAYTSDTIYTYEDYNLETKGMRLKDYEGHFFKGVPVNEYANN------ 224 (489) T ss_pred EEEEcCCCCCceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEecCCCcccceecccccccCCceeEEEeecC------ Confidence 999876542 111 1 22222111 110000 011111124444321 Q ss_pred cccchhHHHHHHHHHHHHHHHH-HHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccc Q lcl|Aclame:pro 214 PYGRSYLESARAIWNQLRLMED-ALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDN 292 (533) Q Consensus 214 ~~g~s~L~~Aik~~NqLrm~Ed-alVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~ 292 (533) ..|+|-++..+....-+-.+-- ....-+..+.|-+-+.-. .++.....+........ -+...+.....+. T Consensus 225 ~~~~s~~~~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~g~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 295 (489) T protein:vir:99 225 EERTGAYESVLDNIDAYDLSQSELANFQQDSVNALLVIAGN---AYTGADENDYLDDGRLN------PNGRLAISIGFKK 295 (489) T ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC---Ccccccchhhhhhcccc------ccccccccccccc Confidence 2455555544333332221111 111111111222111111 12221111222221110 0000000000000 Q ss_pred cchhhhHHhhhhcccccC--CCcceeeecCC-CCCC-hHHHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhHH--HHH Q lcl|Aclame:pro 293 YFSIESILKDYFIPRRGD--RRAVEIDILQG-SKVD-LAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQ--DIK 366 (533) Q Consensus 293 ~~n~~smleDywlprR~g--~~gtEi~TLpG-~nlg-~i~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~rd--e~k 366 (533) . .-+++..... +....+.-|.- .+.. ...-++.+.+.+|+-.++|-- ..+...|+.|..+.. +.. T Consensus 296 ~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~--~~~~~~~n~Sg~Al~~~~~~ 366 (489) T protein:vir:99 296 A-------QVLILDDNPNPNGVKPQAYFLKKEYDTAGSEAYKNRLVADILRFTFTPDT--QDMKFSGVQSGESMKYKLMA 366 (489) T ss_pred c-------eeeeeccccCccccccceeeeeecCChHHHHHHHHHHHHHHHHHhCCccc--ccccccccchHHHHHHHHHH Confidence 0 0011111111 11122222211 1221 122367778889999999942 212212333333321 111 Q ss_pred HHHHHHHHHHHHHHHHhhhh--hh-----ccC-C-Cccce---eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHH Q lcl|Aclame:pro 367 FNNTIKRIQGFFVEELERMV--RM-----NKE-F-ADQDF---RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDW 434 (533) Q Consensus 367 F~kfI~rLr~~F~~~l~~qL--il-----k~i-~-t~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~ 434 (533) -..-+.+-|+.|...|+..+ |+ ++. . ...+| .+.|....--.+... ++++.++..-+++.+ T Consensus 367 l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~~i~v~f~~~~p~d~~~~-------~~~~~kl~giis~et 439 (489) T protein:vir:99 367 SDNYREKQERLFKKGLMRRLRLAANIWAIKGNEATTYSLVNDTSIVFTPNLPQNDNEI-------VTAAQNLYGIVSDQT 439 (489) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccceEEeCCCCCcCHHHH-------HHHHHHHhccCCHHH Confidence 22234444455665554432 21 111 1 22334 577764433223333 334444456689999 Q ss_pred HHHHHhcCChhhh-HHHHHHhhhcccCCCCCcccccccchhhhcCccCCcccccCCCcccccCCCCCccC Q lcl|Aclame:pro 435 IYSNILQIPYDLK-PQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEEL 503 (533) Q Consensus 435 i~k~il~~tde~~-~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (533) +.+.+-..+++.. ++-++|++|..+..... .....+++ .+.-...+..| T Consensus 440 ~~~~l~~v~~~d~~~E~~ri~~E~~~~~~~~-----------~~~~~~~~---------~~~~~~~~~~p 489 (489) T protein:vir:99 440 IFEILNTVTGVDAEAELKRLKEEADKKQSLP-----------EPRLVGDA---------SGQEEPTAEKP 489 (489) T ss_pred HHHhcCCCCchhHHHHHHHHHHHHHHHhccc-----------cccccCCC---------CCCcCCCCCCC Confidence 9888777775443 33456666643221100 00000000 00000000000 No 226 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=94.27 E-value=0.0049 Score=33.26 Aligned_cols=405 Identities=10% Similarity=0.036 Sum_probs=183.3 Q ss_pred CCC-cchh--hhhhhHHHHHHhhcccccccCcccCCCCcccCCCCCccccchhhcccccCccc------cchHHHHHHHH Q lcl|Aclame:pro 1 MPS-LEKY--KKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIE------FNRFFLYDMYD 71 (533) Q Consensus 1 ~~~-~~~w--~k~de~~~~~~~~~~~~s~~~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~------~n~~~li~~YR 71 (533) +|- .-+= -..|+...-+.|...+....+ ..---..||-|.. .+...-++.+| T Consensus 2 ~~~~~~~~~gl~~~~~~~~~~L~~~~~~~~~-------------------~~~~~~~Yy~G~~~~~~~~~~~p~~~r~~~ 62 (474) T protein:vir:81 2 IQQQTVRIPSLSNDENALINGLLAQIENLRW-------------------KNLLRTSYYENKRTIQYVGTLIPPQYFNLG 62 (474) T ss_pred cCCCcCcCCCCChhHHHHHHHHHHHHHHHhh-------------------HHHHHHHHhccCCChhhccccccHHHHHHH Confidence 000 0000 000000000000000000000 0000112333221 01111223333 Q ss_pred HHhhcChhHHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCC Q lcl|Aclame:pro 72 RMDYTDPLISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSD 151 (533) Q Consensus 72 ~m~~~~PEV~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k 151 (533) . .-+-+.-+|+.+++-+.+-++- ..+.+-.+.-...+-..=+|+.+..+.++.-|++|+.|.-..-+... T Consensus 63 ~---v~nw~~~~Vd~~a~rl~~~Gf~-------~~d~~~~~~~l~~iw~~N~ld~~~~~~~~~al~~G~sf~~V~~~~d~ 132 (474) T protein:vir:81 63 L---VLGWTGKAVDALARRCNLEGFV-------WPDGDLDSLGGTEVVDDNHLLSEIDSAIVAAMQHGPAFLINTVGEDD 132 (474) T ss_pred h---hcChHHHHHHHHHhhhcccceE-------CCCCCccchHHHHHHHhcChhHHHHHHHHHHHhhCceeEEEecCCCC Confidence 2 2245666777776644433221 11111111112233445578889999999999999999766654444 Q ss_pred CCeeeeEEcCcceeeEEeeccCcE-----------------EEEEeccccee-----cccCC-----cccccCcccEEEE Q lcl|Aclame:pro 152 GTIEKFQVVSPYIFSKRYNPETDT-----------------WYYVITDVYRN-----VVSGY-----FNEDIPEEDVIHF 204 (533) Q Consensus 152 ~gI~elr~ldP~~ik~v~d~~g~~-----------------e~y~y~~~~~~-----~~~~~-----~~~~~~~~dvi~~ 204 (533) .+..-++.++|+.+..++|..+++ .+.+|.+...+ ++.+. ..+... -.+++| T Consensus 133 ~~~~~i~~~sp~~~~~~~D~~~~~~~~al~~~~~~~~g~~~~~~ly~~~~~~~~~~~~~~~~w~~~~~~~~~g-vPvV~~ 211 (474) T protein:vir:81 133 EPEALIHVKDASEATGEWNRRRRGLNNLLSIIDKDKEGKVLSLALYLDNETVTAQRDKATLKWQVDRDEHVYG-VPAQVL 211 (474) T ss_pred CceeEEEEeccceEEEEEeCCCCcceeeeEEEEEcCCCcEEEEEEEeCCcEEEEEEcCccceeeeccCCCCCC-cceEEe Confidence 455568899999998888876653 12223222111 11100 011111 237777 Q ss_pred ecCcccCcccccchhHH-HHHHHHHH-HHHHHHHHHHHHHhccccceeeecCCCC------CchhhHHHHHHHHHHHhhh Q lcl|Aclame:pro 205 SHKIDTNFFPYGRSYLE-SARAIWNQ-LRLMEDALMLYRVVRSVDRRVFYVDVGN------VPPDKINEYLTNIAMQYKR 276 (533) Q Consensus 205 ~~~~~~d~~~~g~s~L~-~Aik~~Nq-Lrm~EdalVIyRi~RAPeRr~fyidvGn------lp~~kAeqy~~~im~~~kn 276 (533) .++--.+ .++|.|=+- ..+...+- -|.+.+.++.-...=.|.|-++=.+-.. .|..+-..++-.|+ T Consensus 212 ~n~~~~~-~~~G~s~i~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~~~~~~~d~d~~~~~~~~~~~~~i~----- 285 (474) T protein:vir:81 212 PYKPAPK-RPFGQSRITKPMMGLQDAGVRELARREGHMDVFSYPEFWLLGADESALKNADGTIKSVWEARLGRIK----- 285 (474) T ss_pred ccccccc-CcCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeecCChhhcccccccccchhhhhHHHHh----- Confidence 7753332 357777542 33333232 3556667777776666666554222111 11111222222211 Q ss_pred ceeeccCCCeeecccccchhhhHHhhhhccccc-CC----CcceeeecCCCCCChH-HHHHHHHHHHHHhcCCCeeeccC Q lcl|Aclame:pro 277 DYWVRNNQNQFLGIDNYFSIESILKDYFIPRRG-DR----RAVEIDILQGSKVDLA-EDVEYMLNRLISALKVPKAFIGY 350 (533) Q Consensus 277 k~vyd~~tGei~d~~~~~n~~smleDywlprR~-g~----~gtEi~TLpG~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~ 350 (533) .+|.-+ |. .+++|..+++++|.-. +-++=.-..+...-++|...|+. T Consensus 286 ---------------------------~~~~d~d~~~~~~~~~~~~q~~~a~l~~~~~~l~~~~~~~a~~t~iP~~~lG~ 338 (474) T protein:vir:81 286 ---------------------------GLPDDADADIPQLARADVKQFPAASPDAHWSDINGLAKLFAREASLPDTAVAI 338 (474) T ss_pred ---------------------------cCCCcccccccccccccccccCCCChhHHHHHHHHHHHHHHhhhCCCHHHhcc Confidence 122211 11 2456777777766533 33555566677778999999874 Q ss_pred CCCc--cchhhhhHHHHHHHHHHHHHHHHHHHHHh----hhhhhccCCCcc----ce---eEEecCCcHHHHHHHHHHHH Q lcl|Aclame:pro 351 EGDV--NAKNTLATQDIKFNNTIKRIQGFFVEELE----RMVRMNKEFADQ----DF---RLVMNRSNSIVEGERFAVIE 417 (533) Q Consensus 351 ~~~~--gr~~eI~rde~kF~kfI~rLr~~F~~~l~----~qLilk~i~t~e----ew---~~~f~~dn~f~E~ke~ei~~ 417 (533) .+.- +-+..|.-.+..+.+-+.+.|+.|..-|+ .-+-+.|.+..+ +| ++.|....+ -.+. T Consensus 339 ~~~~np~SaeAi~a~~~~l~~kae~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~~~v~W~d~~~-------~s~a 411 (474) T protein:vir:81 339 SGLSNPTSAESYDASQYELIAEAEGAVDDFTPALRKAFIRALAMKNKVAIDEIPDEWKSIDAKWRDPRY-------LSKS 411 (474) T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccchhhccceeEecCCCc-------cCHH Confidence 3222 22345666777788889999999986544 444455654433 33 456644333 1233 Q ss_pred HHHHHHHHh----hhhhhHHHHHHHHhcCChhhhHHHH-HHhhhcccCCCCCcccccccchhhhcCccCCcccccC Q lcl|Aclame:pro 418 QRIGIAERL----KGWVREDWIYSNILQIPYDLKPQEE-VAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPR 488 (533) Q Consensus 418 ~R~~~~~~~----~pyvgk~~i~k~il~~tde~~~q~~-~i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (533) ++.+.+.++ .+++++..+. .+|.+|+++++.-+ ..+++....... ....-..+.+. .+ T Consensus 412 ~~aDa~~Kl~~a~~~~~~~~~~~-~~lg~t~~~i~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~----aq 474 (474) T protein:vir:81 412 AQADAGMKQLAAVPWLAETEVGL-ELIGLTPQQARRAMADKRRVQGRGTLQ--------ALIDRSNNGAT----AQ 474 (474) T ss_pred HHHHHHHHHHhcccCCCcHHHHH-hhcCCCHHHHHHHHHHHHHHhHHHHHH--------HHHhcCCCCCC----CC Confidence 445544444 3455555544 56889986665422 222221100000 00000000000 00 No 227 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=94.03 E-value=0.0056 Score=32.92 Aligned_cols=402 Identities=12% Similarity=0.046 Sum_probs=167.6 Q ss_pred CCCcchhhhhhhHHHHHHhhccccccc-CcccCCCCcccCCCCCccccchhhcccccCccccchHHHHHHHHHHhhcChh Q lcl|Aclame:pro 1 MPSLEKYKKLNEAVNFTNFLSPMYGMG-APHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPL 79 (533) Q Consensus 1 ~~~~~~w~k~de~~~~~~~~~~~~s~~-~p~~~~gas~i~~~~~~~~~~~~~~~~~ygg~~~n~~~li~~YR~m~~~~PE 79 (533) +|..+.=.+.+=..+-......+--+. ..+-..|.+.|... ..- .. +.. | .++. ++- T Consensus 11 ~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~yy~g~~~i~~~---~~~---~~-----~~~-~--------~ki~--~n~ 68 (453) T protein:vir:73 11 YSRDEEITDKVVNDFMKKHQEEVERYEYLGNMYKGIMEISSQ---KAK---DS-----WKP-D--------NRLT--NNF 68 (453) T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcC---CCC---Cc-----cCc-c--------ceee--cch Confidence 332111111110000000000000000 01112333333211 000 00 000 1 1122 355 Q ss_pred HHHHHHHhhceeeecCCCCceeeeecccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEE Q lcl|Aclame:pro 80 ISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQV 159 (533) Q Consensus 80 V~~AId~Ivneaiv~d~~~~~v~v~l~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ 159 (533) ..-+|+..+...+ +.|+.+..++- -.++....+..--+|+....+.++..++.|+.|.+...|. +|-..+.. T Consensus 69 ~~~ivd~~~~~l~-----g~~~~~~~~d~-~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~--~~~~~i~~ 140 (453) T protein:vir:73 69 AKYIVDTFVGYFN-----GIPIKKTHDDK-SVLEAMQLFDNLNDMEDEESELAKIACVYGRAYELMYQNE--STESEVIY 140 (453) T ss_pred HHHHHHHhhhhhc-----ccCceeecCCh-HHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCC--CCceEEEE Confidence 6666777775543 44566655542 2223334444445799999999999999999999988763 45557899 Q ss_pred cCcceeeEEeeccCcEE----------------EEEecccceec--ccC-------CcccccCcccEEEEecCcccCccc Q lcl|Aclame:pro 160 VSPYIFSKRYNPETDTW----------------YYVITDVYRNV--VSG-------YFNEDIPEEDVIHFSHKIDTNFFP 214 (533) Q Consensus 160 ldP~~ik~v~d~~g~~e----------------~y~y~~~~~~~--~~~-------~~~~~~~~~dvi~~~~~~~~d~~~ 214 (533) ++|+.+-++++..++.+ .-+|+....+. +.+ ...+.+..=.++.|.. .+ T Consensus 141 ~~p~~~~~v~dd~~~~~~~~~i~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n------~~ 214 (453) T protein:vir:73 141 CSPLNVFMVYDDSIKQKPLFAVYYGFDEEGNLSGTVYTLLETISITGKAGEVKFGESTYNVYSDLPIVEYNF------NE 214 (453) T ss_pred EcccceEEEEeCCCCceeEEEEEEEEecCceEEEEEEeCCeEEEEEecCCceEEccceeccCCceeEEEecC------CC Confidence 99999988887765421 11122211110 000 0001111112333322 13 Q ss_pred ccchhHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeeccccc Q lcl|Aclame:pro 215 YGRSYLESARAIWNQLRLME-DALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNY 293 (533) Q Consensus 215 ~g~s~L~~Aik~~NqLrm~E-dalVIyRi~RAPeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~ 293 (533) .|.|-++..+....-+-.+- +....-+..+.|-+-+. ..+++. +-+.. .+...+ T Consensus 215 ~g~s~~~~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~---g~~~~~----~~~~~----~~~~~~-------------- 269 (453) T protein:vir:73 215 ERQSIFEPVHSLINSYNKVTSEKANDVEYFSDQYLVFL---GAEVDE----EDAKN----IKDNRL-------------- 269 (453) T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhccceeeee---cCCCCc----hhhhc----cccccc-------------- Confidence 56666665444443333221 22222233444444332 112221 11111 110000 Q ss_pred chhhhHHhhhhcccccC--CCcceeeecCC-CCCChH-HHHHHHHHHHHHhcCCCeeeccCCCCccchhhhhH--HHHHH Q lcl|Aclame:pro 294 FSIESILKDYFIPRRGD--RRAVEIDILQG-SKVDLA-EDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLAT--QDIKF 367 (533) Q Consensus 294 ~n~~smleDywlprR~g--~~gtEi~TLpG-~nlg~i-~Dv~Yf~~kLy~aL~VP~srl~~~~~~gr~~eI~r--de~kF 367 (533) .-+.+.. +...+ +.+.++.+|-. .+.+.+ .-++-+++.+|...++|- +. ..++|..|..+. -+... T Consensus 270 ----~~~~~~~-~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~--~~-~~~~gn~Sg~Al~~~~~~l 341 (453) T protein:vir:73 270 ----INFFDKN-SNGQGTNAAKVDVKFLDKPDSDVQTENLLNRLERSIFQFTMAAN--IS-DENFGNSSGVALAYKLQAM 341 (453) T ss_pred ----ccccccc-cccccccccCceeEEeeecCCHHHHHHHHHHHHHHHHHHhCCcc--cC-cccccCccHHHHHHHHHHH Confidence 0000000 00111 12334555532 133322 337778899999999995 33 234555444443 22223 Q ss_pred HHHHHHHHHHHHHHHhhhh--h---hccCCCccce---eEEecCCcHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH Q lcl|Aclame:pro 368 NNTIKRIQGFFVEELERMV--R---MNKEFADQDF---RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNI 439 (533) Q Consensus 368 ~kfI~rLr~~F~~~l~~qL--i---lk~i~t~eew---~~~f~~dn~f~E~ke~ei~~~R~~~~~~~~pyvgk~~i~k~i 439 (533) ..-+.+.++.|...|++-+ + +...-...+| ++.|.+..--.+. +.+++++.+...+++.++.+.+ T Consensus 342 ~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~v~f~~~~p~~~~-------~~a~~~~k~~giis~et~~~~~ 414 (453) T protein:vir:73 342 SNLALSFQRKFQSALNRRYSLWSSLSTNASNKDAWKDIEYTFTRNEPKDIK-------EQAETANILKGITSEETALSVI 414 (453) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCCCHH-------HHHHHHHHHhccCcHHHHHHhC Confidence 4455666666766555432 1 2222222333 6777654432233 3334555566789999999877 Q ss_pred hcCChhhhHHHHHHhhhcccCCCCCcccccccchhhhcCcc Q lcl|Aclame:pro 440 LQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGER 480 (533) Q Consensus 440 l~~tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~~~~~ 480 (533) -..+| -.++-+.|++|..+.+..+... --..|.+..|.. T Consensus 415 ~~~~d-~~~E~~ri~~E~~~~~~~~~~~-~~~~~~~~~~~~ 453 (453) T protein:vir:73 415 SVIPD-VQAEMEKIKKKKLLQLSLTRTS-NLVRMKQMRGNL 453 (453) T ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHHhc-cCCcchhhhcCC Confidence 66664 1122233333332211110000 000000111111 No 228 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=93.81 E-value=0.0063 Score=32.65 Aligned_cols=337 Identities=12% Similarity=0.053 Sum_probs=145.0 Q ss_pred ccCcccCCC----CcccCCC------CCccccch-hhcccccCcc-ccchHHHHHHHHHHhhcC-----hhHHHHHHHhh Q lcl|Aclame:pro 26 MGAPHGAGG----SSMIPIN------MYHPFATA-GYASRFYGGI-EFNRFFLYDMYDRMDYTD-----PLISTVLDIIA 88 (533) Q Consensus 26 ~~~p~~~~g----as~i~~~------~~~~~~~~-~~~~~~ygg~-~~n~~~li~~YR~m~~~~-----PEV~~AId~Iv 88 (533) |+-.+.... +.....- ......++ ..+-.|++.. +-+...+. .|-+.+... |---.+|-.+. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~p~~~~~~~~~~-~~~~~~~~~~~~~~pi~~~~la~~~ 79 (368) T protein:vir:79 1 MSRNKTRRAARAASAHVRTANTDAPTEHHTDRAAQAEVFSFGDPVEVLDRRELL-DYVECMRMGQWYEPPMPWDGLARSF 79 (368) T ss_pred CCccccccchhccCcccccccccCcchhhccccCceEEEEcCCceeecchhhHH-HHHHHHhccchhccCcCHHHHHHHH Confidence 332221111 0011000 00001111 1111111111 22333332 233333222 11123344443 Q ss_pred ceeeec----CCCCceeeeec-ccccccHHHHHHHHHHhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCeeeeEEcCcc Q lcl|Aclame:pro 89 DECTIP----NENGNIVDVVT-KDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPY 163 (533) Q Consensus 89 neaiv~----d~~~~~v~v~l-~~~e~s~si~~~i~~ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~elr~ldP~ 163 (533) +-+..- -++++.+.+.. -+..++. ..| ...+..|++.|+.|+.++.+. .+.+.+|..|+|. T Consensus 80 ~~~~~h~~~~~~~~n~l~l~~~Pn~~~t~---------~~f----~~l~~d~ll~Gnay~~~~r~~-~G~~~~L~~l~~~ 145 (368) T protein:vir:79 80 RAAAHHSSAVYVKRNILVSTFIPHPLLSR---------ATF----ERLVLDWQVFGNAYLERRENV-LGGTIRLDTPLAK 145 (368) T ss_pred hhccccchhhhhhcchhhhhcCCCcCCCH---------HHH----HHHHHHHhhcCCeEEEEEEcC-CCCEEEEEEeCcc Confidence 222100 01111111111 1111111 123 346678999999999999864 4668899999999 Q ss_pred eeeEEeeccCcEEEEEecccceecccCCcccccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 164 IFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVV 243 (533) Q Consensus 164 ~ik~v~d~~g~~e~y~y~~~~~~~~~~~~~~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~ 243 (533) +|++..+ ++..+|+.. ++....+++.+|+|+..-.+.+ +-||+|-|..|+..+..-...++.. .|.. T Consensus 146 ~v~~~~~--~~~~~~~~~--------~~~~~~~~~~dIihir~~~~~~-~~yGlsp~~~a~~si~l~~aa~~~~--~~~~ 212 (368) T protein:vir:79 146 YVRRGLD--LNTYFFVQN--------WQQPYTFAAGSVFHLQEPDINQ-EVYGLPEYLSALNATWLNESATLFR--RRYY 212 (368) T ss_pred cceeecc--CCEEEEEec--------CCeEEEEccccEEEecCCCCCC-CcccccHHHHHHHHHHHHHHHHHHH--HHHH Confidence 9976554 444444332 2345668899999997433222 2399999999888877666555533 2222 Q ss_pred c--cccceeeecCCCCCchhhHHHHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccC-CCcceeeecC Q lcl|Aclame:pro 244 R--SVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGD-RRAVEIDILQ 320 (533) Q Consensus 244 R--APeRr~fyidvGnlp~~kAeqy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g-~~gtEi~TLp 320 (533) + |-..-|+|+.-+++-+ ++.+-++.-+.+++. -.+.|.+ + + |. -.| ..|.++.-|. T Consensus 213 ~NGa~~~gil~~~~~~l~~-e~~~~lk~~~~~~~G----~~N~g~~---------~-v-----l~-~~g~~~g~~~~pls 271 (368) T protein:vir:79 213 KNGSHAGFILYMTDAAQKQ-EDVDTLREAMKSAKG----PGNFRNL---------F-M-----YA-PNGKKDGIQLLPVS 271 (368) T ss_pred hccCCCceEEEeCCCCCCH-HHHHHHHHHHHHhcC----CcccCce---------e-E-----ec-CCCCccceeEEEcC Confidence 2 2223344443334543 333444444444321 1112221 1 1 11 111 1355555441 Q ss_pred CCCCChH---HHHHHHHHHHHHhcCCCeeeccCCCC-ccchhhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCcc Q lcl|Aclame:pro 321 GSKVDLA---EDVEYMLNRLISALKVPKAFIGYEGD-VNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEFADQ 395 (533) Q Consensus 321 G~nlg~i---~Dv~Yf~~kLy~aL~VP~srl~~~~~-~gr~~eI~rde~kF~k-fI~rLr~~F~~~l~~qLilk~i~t~e 395 (533) - ...++ +=-++-.+.+.++.+||...|+.-++ .+..+.+.-...-|.+ -|.-|+++|.++.. .| .++ T Consensus 272 ~-~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~ie~ln~-~l------~~e 343 (368) T protein:vir:79 272 E-VAAKDEFWNIKNVTRDDQLAAHRVPPQLMGIIPNNTGGFGDVEKAAMVFARNEVKPLQDRLLAIND-WI------GDE 343 (368) T ss_pred C-CHHHHHHHHHHHHhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHh-cc------Ccc Confidence 1 11111 11344466699999999999986432 2223345444455554 56777777765321 11 111 Q ss_pred ceeEEecCCcHHHH-HHHHHHHHHHHH Q lcl|Aclame:pro 396 DFRLVMNRSNSIVE-GERFAVIEQRIG 421 (533) Q Consensus 396 ew~~~f~~dn~f~E-~ke~ei~~~R~~ 421 (533) .+.|.....-.- .+-...-.+|=. T Consensus 344 --~~rF~~~~l~~~D~~a~a~~~~rsa 368 (368) T protein:vir:79 344 --VVRFAPYALGGHDQPAAAPGGQRSA 368 (368) T ss_pred --eeeechhHhhcccccccCCcccccC Confidence 222321111000 000000001100 No 229 >protein:vir:10447 Length: 536 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848294;genbank:gi:30387485;genbank:GeneID:1733984 Probab=27.41 E-value=1.8 Score=19.12 Aligned_cols=399 Identities=12% Similarity=0.131 Sum_probs=157.4 Q ss_pred hcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeec----CCCCc--------------------------- Q lcl|Aclame:pro 51 YASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIP----NENGN--------------------------- 99 (533) Q Consensus 51 ~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~----d~~~~--------------------------- 99 (533) |+-.-. ......+.++|.++...---..+.-+++.+.++-+ +.+.. T Consensus 1 m~~~~~---~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~l 77 (536) T protein:vir:10 1 MAEKRT---GLAEDGAKSVYERLKNDRAPYETRAQNCAQYTIPSLFPKDSDNASTDYQTPWQAVGARGLNNLASKLMLAL 77 (536) T ss_pred Ccchhh---chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHHHHHHHHHHhhh Confidence 221000 01233555556555332112233334444442221 11100 Q ss_pred -e----eeeeccccccc---------HHH---HHHHHH-------HhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCee Q lcl|Aclame:pro 100 -I----VDVVTKDIELA---------KAI---LSYLDY-------VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIE 155 (533) Q Consensus 100 -~----v~v~l~~~e~s---------~si---~~~i~~-------ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~ 155 (533) | ..+.+.+.++. .++ ++.+.+ .-+|...+|+.+..+.+.|+..+..--+ +..|+. T Consensus 78 tP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly~~e~-~~~~~~ 156 (536) T protein:vir:10 78 FPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLLYLPEP-EGSNYN 156 (536) T ss_pred cCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEEeeC-CCCcee Confidence 1 11222221211 112 222222 2378999999999999999987654332 334443 Q ss_pred eeEEcCcceeeEEeeccCcEE-----------------------------------EE--Eecc-c---cee----cc-- Q lcl|Aclame:pro 156 KFQVVSPYIFSKRYNPETDTW-----------------------------------YY--VITD-V---YRN----VV-- 188 (533) Q Consensus 156 elr~ldP~~ik~v~d~~g~~e-----------------------------------~y--~y~~-~---~~~----~~-- 188 (533) -++..+-..+-+.+|..|++. .| +|.. . +.. .+ T Consensus 157 ~~~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~V~~~~~~~~~~~~~e~~g~~ 236 (536) T protein:vir:10 157 PMKLYRLSSYVVQRDAFGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHIYLDEASGEYLRYEEVEGME 236 (536) T ss_pred eEEEEEcCeEEEeeCCCCCeeEEeeeeeccHHHHHHhhhhhhcccccccCcccceEEEEEEEEecCCCcEEEEEeecCcc Confidence 344445555556667666521 11 0100 0 000 00 Q ss_pred -cCCccc-ccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCC--CCchhhHH Q lcl|Aclame:pro 189 -SGYFNE-DIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVG--NVPPDKIN 264 (533) Q Consensus 189 -~~~~~~-~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvG--nlp~~kAe 264 (533) .+.++. .+..--.+++......+ ..||+|+.+.|+-.++.|..|..+++.+=..=+ +.++.++-+ ..| T Consensus 237 v~~~~g~~~f~~~P~i~~Rw~~~~g-e~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~--~~~~lv~p~g~~~~----- 308 (536) T protein:vir:10 237 VQGSDGTYPKEACPYIPIRMVRLDG-ESYGRSYIEEYLGDLRSLENLQEAIVKMSMISS--KVIGLVNPAGITQP----- 308 (536) T ss_pred ccccccccccccCCceeeeeeecCC-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcccCcccccch----- Confidence 000000 00001122222222222 369999999999999999999998887643322 333333222 211 Q ss_pred HHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecC---CCCCC-hHHHHHHHHHHHHHh Q lcl|Aclame:pro 265 EYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQ---GSKVD-LAEDVEYMLNRLISA 340 (533) Q Consensus 265 qy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLp---G~nlg-~i~Dv~Yf~~kLy~a 340 (533) ++ .-.+.+|.+ .| |++-.|+.+| +++++ -..++..++.+|-++ T Consensus 309 ---~~---------~~~~~~g~~-----------------v~----g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~a 355 (536) T protein:vir:10 309 ---RR---------LTKAQTGDF-----------------VT----GRPEDISFLQLEKQADFTVAKAVSDAIEARLSFA 355 (536) T ss_pred ---hh---------hccCCCcce-----------------ec----CCcccceeeeccccccchHHHHHHHHHHHHHHHH Confidence 01 112233432 22 1122344555 34665 446788888888777 Q ss_pred cCCCeeeccCCCCcc-chhhhhHH--HHH--HHHHHHHHHHHHH-HHHhhh---hhhccCCC---ccceeEEecCCcHHH Q lcl|Aclame:pro 341 LKVPKAFIGYEGDVN-AKNTLATQ--DIK--FNNTIKRIQGFFV-EELERM---VRMNKEFA---DQDFRLVMNRSNSIV 408 (533) Q Consensus 341 L~VP~srl~~~~~~g-r~~eI~rd--e~k--F~kfI~rLr~~F~-~~l~~q---Lilk~i~t---~eew~~~f~~dn~f~ 408 (533) +-+- .+...++-. -++||..- |+. +.--+.||+..|- .++.+- |--+|.+. ++..+.+|.. .-+ T Consensus 356 f~~~--~l~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs--~l~ 431 (536) T protein:vir:10 356 FMLN--SAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEAVEPTIST--GLE 431 (536) T ss_pred Hhhh--hcccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEEe--cHH Confidence 7432 111111100 13444431 111 3334444444432 233221 11244443 3344666653 344 Q ss_pred HHHHHHHHHH---HHHHHHHhhh-----hhhHHHHHHHHhc---C-ChhhhHHHHHHhhhcccCCCCCcccccccchhhh Q lcl|Aclame:pro 409 EGERFAVIEQ---RIGIAERLKG-----WVREDWIYSNILQ---I-PYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADF 476 (533) Q Consensus 409 E~ke~ei~~~---R~~~~~~~~p-----yvgk~~i~k~il~---~-tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~ 476 (533) .+....-++. -++.++++.| +|..+-+++.+.. . +.+++..+++.++...+... +...+.....- T Consensus 432 ~l~r~~~~~~l~~~~~~la~~~P~~ld~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~---~~~~~~~a~~~ 508 (536) T protein:vir:10 432 AIGRGQDLDKLERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSM---QMGMDNGAAAL 508 (536) T ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhcccCCHHHHHHHHHHHcCCCchhhcCCHHHHHHHHHHHHH---HHHHHHHHHHH Confidence 5544444444 4455555544 6666666666643 3 22333211111111100000 00000000000 Q ss_pred cCc-cCCcccccC--CCcccccCCCCCc Q lcl|Aclame:pro 477 LGE-RGSPIESPR--GRTEFDFGTEGGE 501 (533) Q Consensus 477 ~~~-~~~~~~~~~--~~~~~~~~~~~~~ 501 (533) .+. ++.+.-+|. +.-....|.+|+- T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 536 (536) T protein:vir:10 509 AQGMAAQATASPEAMAAAADSVGLQPGI 536 (536) T ss_pred HHHHHHHHhcCchhHHhhhhccccCCCC Confidence 000 111111110 0000111111111 No 230 >protein:vir:2198 Length: 536 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_041995;swissprot:sw:p03728;genbank:gi:9627467;goa:P03728;uniprot:P03728;genbank:GeneID:1261033 Probab=23.62 E-value=2.3 Score=18.62 Aligned_cols=399 Identities=12% Similarity=0.127 Sum_probs=157.6 Q ss_pred hcccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeec----CCCCc--------------------------- Q lcl|Aclame:pro 51 YASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIP----NENGN--------------------------- 99 (533) Q Consensus 51 ~~~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~----d~~~~--------------------------- 99 (533) |+-.-. ......+.++|.++...---..+.-+++.+.++-+ +.+.. T Consensus 1 m~~~~~---~~~~~~~~~r~~~lk~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~l 77 (536) T protein:vir:21 1 MAEKRT---GLAEDGAKSVYERLKNDRAPYETRAQNCAQYTIPSLFPKDSDNASTDYQTPWQAVGARGLNNLASKLMLAL 77 (536) T ss_pred Ccchhh---chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHHHHHHHHHHHhh Confidence 221000 01233555566655332112233334444442221 11100 Q ss_pred -e----eeeeccccccc---------HHH---HHHHHH-------HhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCee Q lcl|Aclame:pro 100 -I----VDVVTKDIELA---------KAI---LSYLDY-------VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIE 155 (533) Q Consensus 100 -~----v~v~l~~~e~s---------~si---~~~i~~-------ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI~ 155 (533) | ..+.+.+.++. .++ ++.+.+ .-+|...+|+.+..+.+.|+..+..--+ +..|+. T Consensus 78 tP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly~~e~-~~~~~~ 156 (536) T protein:vir:21 78 FPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLLYLPEP-EGSNYN 156 (536) T ss_pred cCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEEeeC-CCCcee Confidence 1 11222221111 112 222222 2378999999999999999987654332 334443 Q ss_pred eeEEcCcceeeEEeeccCcEE-----------------------------------EE--Eeccc----ce-ecc----- Q lcl|Aclame:pro 156 KFQVVSPYIFSKRYNPETDTW-----------------------------------YY--VITDV----YR-NVV----- 188 (533) Q Consensus 156 elr~ldP~~ik~v~d~~g~~e-----------------------------------~y--~y~~~----~~-~~~----- 188 (533) -++..+-..+-+.+|..|++. .| +|... +. +.. T Consensus 157 ~f~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~~~~~~e~~g~~ 236 (536) T protein:vir:21 157 PMKLYRLSSYVVQRDAFGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHIYLDEDSGEYLRYEEVEGME 236 (536) T ss_pred eEEEEEcCeEEEeeCCCCCeeEEeeeeeccHHHHHHhhhhhhcccccccccccceeEEEEEEEecCCCcEEEEeccCCee Confidence 344445555566677776521 11 00000 00 000 Q ss_pred -cCCcc-cccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecCCC--CCchhhHH Q lcl|Aclame:pro 189 -SGYFN-EDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVG--NVPPDKIN 264 (533) Q Consensus 189 -~~~~~-~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyidvG--nlp~~kAe 264 (533) .+.++ ..+..--.+++......+ ..||+|+.+.|+-.++.|..|..+++.+=..=+ +.++.++-+ ..| T Consensus 237 v~~~~g~~~f~~~P~i~~Rw~~~~g-e~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~--~~~~lv~p~g~~~~----- 308 (536) T protein:vir:21 237 VQGSDGTYPKEACPYIPIRMVRLDG-ESYGRSYIEEYLGDLRSLENLQEAIVKMSMISS--KVIGLVNPAGITQP----- 308 (536) T ss_pred eccccCccccccCCeeeeeeeecCC-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcccCcccccch----- Confidence 00000 000000122222222222 369999999999999999999998887643322 333333222 211 Q ss_pred HHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecC---CCCCC-hHHHHHHHHHHHHHh Q lcl|Aclame:pro 265 EYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQ---GSKVD-LAEDVEYMLNRLISA 340 (533) Q Consensus 265 qy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLp---G~nlg-~i~Dv~Yf~~kLy~a 340 (533) ++ .-.+.+|.+ .| |++-.|+.+| +++++ -..++..++.+|-++ T Consensus 309 ---~~---------~~~~~~g~~-----------------v~----g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~a 355 (536) T protein:vir:21 309 ---RR---------LTKAQTGDF-----------------VT----GRPEDISFLQLEKQADFTVAKAVSDAIEARLSFA 355 (536) T ss_pred ---hh---------hccCCCcce-----------------ec----CCcccceeeeccccccchHHHHHHHHHHHHHHHH Confidence 01 112233332 22 1122344555 34665 446788888888777 Q ss_pred cCCCeeeccCCCCcc-chhhhhHH--HHH--HHHHHHHHHHHHH-HHHhhh---hhhccCCC---ccceeEEecCCcHHH Q lcl|Aclame:pro 341 LKVPKAFIGYEGDVN-AKNTLATQ--DIK--FNNTIKRIQGFFV-EELERM---VRMNKEFA---DQDFRLVMNRSNSIV 408 (533) Q Consensus 341 L~VP~srl~~~~~~g-r~~eI~rd--e~k--F~kfI~rLr~~F~-~~l~~q---Lilk~i~t---~eew~~~f~~dn~f~ 408 (533) +-+- .+...++-. -++||..- |+. +.--+.||+..|- .++.+- |--+|.+. ++..+.+|.. .-+ T Consensus 356 f~~~--~l~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs--~l~ 431 (536) T protein:vir:21 356 FMLN--SAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEAVEPTIST--GLE 431 (536) T ss_pred Hhhh--hcccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEEe--cHH Confidence 7432 111111100 13444431 111 3334444444432 233221 11244443 3344666653 345 Q ss_pred HHHHHHHHHHH---HHHHHHhh-----hhhhHHHHHHHHhc---C-ChhhhHHHHHHhhhcccCCCCCcccccccchhhh Q lcl|Aclame:pro 409 EGERFAVIEQR---IGIAERLK-----GWVREDWIYSNILQ---I-PYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADF 476 (533) Q Consensus 409 E~ke~ei~~~R---~~~~~~~~-----pyvgk~~i~k~il~---~-tde~~~q~~~i~~E~~~~~~~~~~~~~~~~~~~~ 476 (533) .+....-++.- ++.++++. ++|..+-+++.+.. . +.+++..+++.++...+... +...+.....- T Consensus 432 ~l~r~~~~~~l~~~~~~la~~~Pe~ld~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~---~~~~~~~a~~~ 508 (536) T protein:vir:21 432 AIGRGQDLDKLERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSM---QMGMDNGAAAL 508 (536) T ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhcccCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHH---HHHHHHHHHHH Confidence 55444444444 44455554 46666666666643 3 22333211111111100000 00000000000 Q ss_pred cCc-cCCcccccC--CCcccccCCCCCc Q lcl|Aclame:pro 477 LGE-RGSPIESPR--GRTEFDFGTEGGE 501 (533) Q Consensus 477 ~~~-~~~~~~~~~--~~~~~~~~~~~~~ 501 (533) .+. ++.+.-+|. +.-....|.+|+- T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 536 (536) T protein:vir:21 509 AQGMAAQATASPEAMAAAADSVGLQPGI 536 (536) T ss_pred HHHHHHHHhcChhhHHhhhhccccCCCC Confidence 000 111111110 0000111111111 No 231 >protein:vir:94572 Length: 535 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919010;genbank:gi:119637774;genbank:GeneID:5179332 Probab=21.46 E-value=2.6 Score=18.31 Aligned_cols=394 Identities=12% Similarity=0.088 Sum_probs=156.6 Q ss_pred hc-ccccCccccchHHHHHHHHHHhhcChhHHHHHHHhhceeeec--CCCCc---------------------------- Q lcl|Aclame:pro 51 YA-SRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIP--NENGN---------------------------- 99 (533) Q Consensus 51 ~~-~~~ygg~~~n~~~li~~YR~m~~~~PEV~~AId~Ivneaiv~--d~~~~---------------------------- 99 (533) |+ +.-+.|.. ...+-.+|.++...---..+.-+++.+.++-+ .+++. T Consensus 1 ~~~~~~~~~~~--~~~~~~r~~~l~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~ 78 (535) T protein:vir:94 1 MASSQKREGFA--ENGAKAVYDALKNDRNSYETRAENCAKYTIPSLFPKDSDNASTDYTTPWQAVGARGLNNLASKLMLA 78 (535) T ss_pred CCchhhhhhHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccCCCCCCccccccCCcccccHHHHHHHHHHHHHhh Confidence 11 11111111 11234455554332112333444555443321 01100 Q ss_pred --e----eeeecccccc---------cHHHHHHHH---H-------HhhhHHHHHHHHHHHhhcCceeEEEeecCCCCCe Q lcl|Aclame:pro 100 --I----VDVVTKDIEL---------AKAILSYLD---Y-------VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTI 154 (533) Q Consensus 100 --~----v~v~l~~~e~---------s~si~~~i~---~-------ll~f~~~~~e~~R~wyvDGr~~~~kiid~~k~gI 154 (533) | ..+.+.+..+ .+++.+.+. + ..+|...+|+.+..+.+.|+..+..--+ +..++ T Consensus 79 ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~-~~~~~ 157 (535) T protein:vir:94 79 LFPMQTWMKLTISEFEAKQLVAQPAELAKVEEGLSMVERILMNYIESNSYRVTLFETLKQLVVAGNALLYIPEP-EGTYN 157 (535) T ss_pred hcCCCCccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeEeeccC-cCccc Confidence 1 1111111110 012222222 1 2478999999999999999986653222 22222 Q ss_pred eeeEEcCcceeeEEeeccCcEE----------------------------------EEE--ecccc--eec---ccCCcc Q lcl|Aclame:pro 155 EKFQVVSPYIFSKRYNPETDTW----------------------------------YYV--ITDVY--RNV---VSGYFN 193 (533) Q Consensus 155 ~elr~ldP~~ik~v~d~~g~~e----------------------------------~y~--y~~~~--~~~---~~~~~~ 193 (533) -++-.+-.++-+.+|..|++. .|. |.... .+. ...+.. T Consensus 158 -~f~~~pl~~y~v~~d~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~~~~~~e~~g~~ 236 (535) T protein:vir:94 158 -PMKLYRLSSYVVQRDAFGTVLQIVTLDKTAYAALPEDVRNSMDSSQEHKGDEMIDVYTHIYLDEESGEYLKYEEIDGVE 236 (535) T ss_pred -ceEEEEcCeEEEeeCCCCCeEEEEeeeeccHHHhhHHHHHHHHhccccCCCceeEEEEEEEeeCCCCcEEEEEEecCee Confidence 233333344455566666521 110 00000 000 000000 Q ss_pred -------cccCcccEEEEecCcccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeecC-CC-CCchhhHH Q lcl|Aclame:pro 194 -------EDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVD-VG-NVPPDKIN 264 (533) Q Consensus 194 -------~~~~~~dvi~~~~~~~~d~~~~g~s~L~~Aik~~NqLrm~EdalVIyRi~RAPeRr~fyid-vG-nlp~~kAe 264 (533) ..+..-..++.......+ +.||+|+.+.|+-.++.|..|+.+++.+-..=+ +.++.++ -| ..| T Consensus 237 ~~~~~~~~g~~~~P~~~~Rw~~~~g-e~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~--~~~~lv~p~g~~~~----- 308 (535) T protein:vir:94 237 VEGTDASYPVDACPYIPVRMVRIDG-ESYGRSYCEEYLGDLRSLENLQEAIVKMSMISA--KVIGLVNPAGITQV----- 308 (535) T ss_pred eccccccCccccCCceeeeeeecCC-CccccchHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcccccccccch----- Confidence 000001122222222222 369999999999999999999998888765422 3444432 12 111 Q ss_pred HHHHHHHHHhhhceeeccCCCeeecccccchhhhHHhhhhcccccCCCcceeeecC---CCCCC-hHHHHHHHHHHHHHh Q lcl|Aclame:pro 265 EYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQ---GSKVD-LAEDVEYMLNRLISA 340 (533) Q Consensus 265 qy~~~im~~~knk~vyd~~tGei~d~~~~~n~~smleDywlprR~g~~gtEi~TLp---G~nlg-~i~Dv~Yf~~kLy~a 340 (533) +-+.++.+|.| .| |.+-.|..++ +++++ -..+++.++.+|.++ T Consensus 309 ------------~~~~~~~~g~~-----------------v~----g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~a 355 (535) T protein:vir:94 309 ------------RRLTKAQTGDF-----------------VS----GRPEDISFLQLEKAADFSVARAVSEQIEGRLSYA 355 (535) T ss_pred ------------hhcccCCCcee-----------------ec----CCcccceeeecccccchhHHHHHHHHHHHHHHHH Confidence 11223334443 22 1112333443 23565 346788999999888 Q ss_pred cCCCeeeccCCCCccc--hhhhhH--HHHH--HHHHHHHHHHHHH-HHHhhhh---hhccCC---CccceeEEecCCcHH Q lcl|Aclame:pro 341 LKVPKAFIGYEGDVNA--KNTLAT--QDIK--FNNTIKRIQGFFV-EELERMV---RMNKEF---ADQDFRLVMNRSNSI 407 (533) Q Consensus 341 L~VP~srl~~~~~~gr--~~eI~r--de~k--F~kfI~rLr~~F~-~~l~~qL---ilk~i~---t~eew~~~f~~dn~f 407 (533) +=+- .+... +..| ++||.. .|+. |.=-+.||+..|- .++.+-+ --+|.+ .++-.+.+|.. .- T Consensus 356 f~~~--~~~~~-d~~rvTAtEV~~r~~E~~~~LGpv~~rl~~ElL~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs--~l 430 (535) T protein:vir:94 356 FMLN--SAVQR-TGERVTAEEIRYVASELEDTLGGVYSILSQELQLPMVRVLLKQLQATNQIPELPKEAVEPTIST--GM 430 (535) T ss_pred HhHh--hhccC-CCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEee--hH Confidence 8321 11111 1111 344433 1211 3334444444432 2333321 123444 33445667754 34 Q ss_pred HHHHHHHHHH---HHHHHHHHhhh-----hhhHHHHHHHHhc---C-------ChhhhHHHHHHhhhcccCCCCCccccc Q lcl|Aclame:pro 408 VEGERFAVIE---QRIGIAERLKG-----WVREDWIYSNILQ---I-------PYDLKPQEEVAEAAGGGGLFDTGGFGE 469 (533) Q Consensus 408 ~E~ke~ei~~---~R~~~~~~~~p-----yvgk~~i~k~il~---~-------tde~~~q~~~i~~E~~~~~~~~~~~~~ 469 (533) +.+....-++ +-++.++++.| +|..+-+.+.+.. . |+|++++..+-.++.. .. ...-. T Consensus 431 a~l~r~~~~~~l~~~~~~laq~~P~~ld~~id~d~~~~~~a~~~Gvp~~~i~rs~eev~~~~~q~~~~~---~~-~~~~~ 506 (535) T protein:vir:94 431 EALGRGQDLDKLERCIAAWSALAPMQGDPDINIATIKLRIANAIGIDTSGILKTPEEKQQEMAEAAQGT---AM-QNAAA 506 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHhhChHHhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHH---HH-HHHHH Confidence 5554444344 44455555555 5554444444432 2 3333332111000000 00 00000 Q ss_pred ccchhhhcCccCCcccccCCCcccccCCCCC Q lcl|Aclame:pro 470 ETTPADFLGERGSPIESPRGRTEFDFGTEGG 500 (533) Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (533) + .++-.+..+.+....+.......|+.|. T Consensus 507 ~--~g~~~~~~~~~~~~~~~~~~~~~g~~~~ 535 (535) T protein:vir:94 507 S--AGAGAGTMATASPENMKAAAAQAGMAPN 535 (535) T ss_pred H--HHHhhhcccccChHHHHHHHHHhccCCC Confidence 0 0111111111111112222344455444 Done!