Query lcl|Aclame:protein:vir:2508|NCBI_annot:hypothetical protein|genbank:acc:NP_569749;genbank:gi:18496899;genbank:GeneID:932297 Match_columns 139 No_of_seqs 5 out of 7 Neff 1.8 Searched_HMMs 1612 Date Sat Nov 30 06:07:45 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_13 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_13_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:2508 Length: 139 # 100.0 3E-94 1.9E-97 533.3 11.4 139 1-139 1-139 (139) 2 protein:vir:99925 Length: 147 100.0 1.2E-86 7.6E-90 491.6 11.5 139 1-139 1-145 (147) 3 protein:vir:98426 Length: 131 93.6 0.0018 1.1E-06 35.7 8.3 127 4-136 1-131 (131) 4 protein:vir:4348 Length: 121 # 86.7 0.0099 6.1E-06 31.6 6.0 112 3-133 1-121 (121) 5 protein:vir:9579 Length: 111 # 85.6 0.018 1.1E-05 30.1 6.9 111 6-132 1-111 (111) 6 protein:vir:94768 Length: 111 75.0 0.15 9.4E-05 25.1 8.4 111 6-132 1-111 (111) 7 protein:vir:1643 Length: 111 # 66.2 0.27 0.00017 23.7 8.6 111 6-132 1-111 (111) 8 protein:vir:97070 Length: 118 55.0 0.43 0.00026 22.6 6.5 107 1-132 1-118 (118) 9 protein:vir:81066 Length: 118 42.6 0.88 0.00055 20.9 6.7 108 1-132 1-118 (118) 10 protein:vir:9764 Length: 111 # 40.3 0.98 0.00061 20.6 8.1 110 6-133 1-111 (111) 11 protein:vir:1892 Length: 121 # 33.8 1.3 0.00083 19.9 5.9 112 3-133 1-121 (121) 12 protein:vir:1438 Length: 115 # 27.8 1 0.00063 20.5 4.0 105 1-130 1-115 (115) 13 protein:vir:100116 Length: 115 26.2 1.1 0.00068 20.4 3.8 102 1-130 1-115 (115) No 1 >protein:vir:2508 Length: 139 # NCBI annotation: hypothetical protein # Family: family:all:11707 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569749;genbank:gi:18496899;genbank:GeneID:932297 Probab=100.00 E-value=3e-94 Score=533.28 Aligned_cols=139 Identities=100% Similarity=1.566 Sum_probs=138.9 Q ss_pred CcccCcchhHHHHHHHHHHHHhhcCCccccceeCCCCCccceEEEecCCCCcceehhheeEEeeeeccceeeeccChhHH Q lcl|Aclame:pro 1 MTLVPSVGPLVAARAYLLDELAARANPLPVGANPPEGEPSSYALLSRPGSDRDVFLGHFLIRVRVFDSDVVRLERNADLL 80 (139) Q Consensus 1 ~~l~P~vgP~~A~raYL~~eLa~R~npLpVg~~pP~G~Pt~Yalls~~~t~~~~~l~~~LiR~RV~d~D~vrle~nA~LL 80 (139) |||+|+|||++|||+||||||||||||||||++|||||||||+|||||||++++||+|||||+||||+|+|||||||||| T Consensus 1 ~~lvP~v~P~~A~RaYLl~~L~~Rg~~L~Vga~pPeG~Pt~Yallsr~~s~r~~~l~~~LIRvRVyd~D~~~~~r~A~LL 80 (139) T protein:vir:25 1 MTLVPSVGPLVAARAYLLDELAARANPLPVGANPPEGEPSSYALLSRPGSDRDVFLGHFLIRVRVFDSDVVRLERNADLL 80 (139) T ss_pred CcccCccchHHHHHHHHHHHHhhcCCcccccccCCCCCcceeEEEecCCCCceeehhheeEEEEeecchhhhhccchhHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHhhhhhceeecCCCceEeeecccccCCcccCCCCCCcccceeeeeeeeeeecccCC Q lcl|Aclame:pro 81 HALLCGANHRKVHTPEGDVWITGAAHHYGPADLDDPDVPLFGMQAAVFWTIGLKPARRS 139 (139) Q Consensus 81 H~lll~A~~~kiv~peG~vwitga~H~~GPadlDD~~vplfG~~~aVFWTigLkp~~r~ 139 (139) |++||||+|||||||||+||||||+|+||||++||++|||||||+||||||||||+||| T Consensus 81 Ha~LlgA~h~kvv~PeG~vWiTGa~H~~GPa~~DD~~v~LfG~q~aVFWTi~LkP~r~~ 139 (139) T protein:vir:25 81 HALLCGANHRKVHTPEGDVWITGAAHHYGPADLDDPDVPLFGMQAAVFWTIGLKPARRS 139 (139) T ss_pred HHHHhhhhcceeeccCCceEeeccccccCCcccCCCccccccchhheeeeecccccccC Confidence 99999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:99925 Length: 147 # NCBI annotation: gp12 # Family: family:all:11707 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655529;genbank:gi:109392299;genbank:GeneID:4157094 Probab=100.00 E-value=1.2e-86 Score=491.57 Aligned_cols=139 Identities=42% Similarity=0.802 Sum_probs=135.1 Q ss_pred Cc----ccCcchhHHHHHHHHHHHHhhcCCccccceeCCCCCccceEEEecCCCCcceehhheeEEeeeeccceeeeccC Q lcl|Aclame:pro 1 MT----LVPSVGPLVAARAYLLDELAARANPLPVGANPPEGEPSSYALLSRPGSDRDVFLGHFLIRVRVFDSDVVRLERN 76 (139) Q Consensus 1 ~~----l~P~vgP~~A~raYL~~eLa~R~npLpVg~~pP~G~Pt~Yalls~~~t~~~~~l~~~LiR~RV~d~D~vrle~n 76 (139) || .-|+|||++|||+||||||||||||||||++|||||||||+|||||||++++||+|||||+||||+|+|||||| T Consensus 1 ~~~~~~~~P~v~P~~A~RaYLl~~L~~Rg~~L~VgatpPeG~Pt~Yallsr~~s~r~~~l~~~LIRvRVyd~D~~~~~r~ 80 (147) T protein:vir:99 1 MTAPEMVGPTMEPAIACRAYLMRRLDDRGIDLSVGATPPDGKPTRYVLVNQVDSRRRGPVADYLIRTRVYNADAYECGQH 80 (147) T ss_pred CCCccccCCcchhHHHHHHHHHHHHhhcCCcccccccCCCCCCcceEEEecCCCCceeehhheeEEEEeecchhhhhccc Confidence 44 56999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhHHHHHHhhhhhceeecCC-CceEeeecccccCCccc-CCCCCCcccceeeeeeeeeeecccCC Q lcl|Aclame:pro 77 ADLLHALLCGANHRKVHTPE-GDVWITGAAHHYGPADL-DDPDVPLFGMQAAVFWTIGLKPARRS 139 (139) Q Consensus 77 A~LLH~lll~A~~~kiv~pe-G~vwitga~H~~GPadl-DD~~vplfG~~~aVFWTigLkp~~r~ 139 (139) |||||++||||+|||||||| |+||||||+|+|||||| ||++|||||||+||||||||||-.-. T Consensus 81 A~LLHa~LlgA~h~kvv~Pd~G~vWiTGa~H~~GPad~~DD~~v~LfG~q~aVFWTi~LkP~~~~ 145 (147) T protein:vir:99 81 ATLLHAALLGAAQARIVFPDVGQLWVTGTEHVSGPSDITDDDTTTLFGQAISVFWTVALKPIEGN 145 (147) T ss_pred hhHHHHHHhhhhcceeeecCCCceEeecccccccccccCCCCCccccchhhheeeeeeeeeccCC Confidence 99999999999999999997 99999999999999999 99999999999999999999997655 No 3 >protein:vir:98426 Length: 131 # NCBI annotation: ORF6 # Family: family:all:12105 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958284;genbank:gi:41057258;uniprot:Q38599;genbank:GeneID:2732810 Probab=93.56 E-value=0.0018 Score=35.66 Aligned_cols=127 Identities=21% Similarity=0.223 Sum_probs=89.0 Q ss_pred cCcchhHHHH---HHHHHHHHhhcCCccccceeCCCCCccceEEEecCCCCccee-hhheeEEeeeeccceeeeccChhH Q lcl|Aclame:pro 4 VPSVGPLVAA---RAYLLDELAARANPLPVGANPPEGEPSSYALLSRPGSDRDVF-LGHFLIRVRVFDSDVVRLERNADL 79 (139) Q Consensus 4 ~P~vgP~~A~---raYL~~eLa~R~npLpVg~~pP~G~Pt~Yalls~~~t~~~~~-l~~~LiR~RV~d~D~vrle~nA~L 79 (139) .||+-+-.|. -.||.+.|.++|-+.+|+-.-|.-.|.+++.++|-|-++.-+ +.+=.+.|-+|-++.-+...=|.+ T Consensus 1 ~~~i~~pda~~v~~~~lr~~l~a~~~~V~V~t~vP~~RP~rfV~VertgG~~~~~~~Dr~~L~Vq~W~~t~~~A~~La~~ 80 (131) T protein:vir:98 1 MPPILMPDAVAVIAGYLRAVLVARGVTVPVGSRVPSPRPARFVRIERIGGPANTVVTDRPRLDVHCWGSSEEDAHDLMQL 80 (131) T ss_pred CCCccCCchhHHHHHHHHHHHHhcCCceEecccCCCCCCceEEEEEecCCCcCCccccceEEEEEecCCCHHHHHHHHHH Confidence 4444332221 258999999999999999999999999999999999977777 677888899999877776666666 Q ss_pred HHHHHhhhhhceeecCCCceEeeecccccCCcccCCCCCCcccceeeeeeeeeeecc Q lcl|Aclame:pro 80 LHALLCGANHRKVHTPEGDVWITGAAHHYGPADLDDPDVPLFGMQAAVFWTIGLKPA 136 (139) Q Consensus 80 LH~lll~A~~~kiv~peG~vwitga~H~~GPadlDD~~vplfG~~~aVFWTigLkp~ 136 (139) .-.+|+.+ . ++. ..-+-+-.-.-||-++-|++....=+|+.|-=|+--+.- T Consensus 81 vr~~ll~~-~-~~~----g~~~~~~~e~~gpy~~PD~es~~~Ryq~tv~l~~r~~~~ 131 (131) T protein:vir:98 81 CRALLGAA-R-GSH----GDTVLARPATGGPQFLPDAETGAARWAFTLDITMRGHAL 131 (131) T ss_pred HHHHHhhc-c-ccc----chheeccccCCCCCcCCCCCCCCceeEEEEEEEeeeccC Confidence 66666522 1 111 122223334458999988997788888888655422222 No 4 >protein:vir:4348 Length: 121 # NCBI annotation: Orf15 # Family: family:all:896 # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061511;genbank:gi:9635607;genbank:GeneID:1262874 Probab=86.67 E-value=0.0099 Score=31.58 Aligned_cols=112 Identities=20% Similarity=0.309 Sum_probs=69.8 Q ss_pred ccCcchhHHHHHHHHHHHHhhcCCcc---ccceeCCCCCccceEEEecCCCCcceehh------heeEEeeeeccceeee Q lcl|Aclame:pro 3 LVPSVGPLVAARAYLLDELAARANPL---PVGANPPEGEPSSYALLSRPGSDRDVFLG------HFLIRVRVFDSDVVRL 73 (139) Q Consensus 3 l~P~vgP~~A~raYL~~eLa~R~npL---pVg~~pP~G~Pt~Yalls~~~t~~~~~l~------~~LiR~RV~d~D~vrl 73 (139) +.|++=-+..+-+=|...|.. +|. |-|. +|+|.|.+|+..++++.....+|. +..+.+-||..+.-+. T Consensus 1 m~~~i~~~l~~d~~v~allg~--~~~Rvyp~~~-aP~~~~~Pyiv~q~vsg~p~~~l~g~~~~~~~~vQIDvyA~t~~~A 77 (121) T protein:vir:43 1 MYPPIFKVCSSSPAVTAILGA--SPLRMYQFGL-APQLVVKPYATWQTISGSPENYLWGRPDADGFTIQVDIFSATAAEA 77 (121) T ss_pred CChHHHHHHhhChhhhhhhcC--CCceeeccCC-CCCCCcCCeEEEEEecCcccceecCCCCcceeEEEEEeeeCCHHHH Confidence 455555555555666666643 332 3333 699999999999999988877775 4677788887664333 Q ss_pred ccChhHHHHHHhhhhhceeecCCCceEeeecccccCCcccCCCCCCcccceeeeeeeeee Q lcl|Aclame:pro 74 ERNADLLHALLCGANHRKVHTPEGDVWITGAAHHYGPADLDDPDVPLFGMQAAVFWTIGL 133 (139) Q Consensus 74 e~nA~LLH~lll~A~~~kiv~peG~vwitga~H~~GPadlDD~~vplfG~~~aVFWTigL 133 (139) .+-++-+..+|... .+.+ .++. |.-|+|+-||+...=|=|.+.- T Consensus 78 ~~l~~av~~Al~~~--------~~~~-------~~~~-~~ye~dT~lyR~s~Dv~w~~~r 121 (121) T protein:vir:43 78 RDAAKAIRDAIELS--------AYVV-------RWGG-ESVDPDTKTYRVSFDVDWIVQR 121 (121) T ss_pred HHHHHHHHHHhhhc--------CCcc-------cCCC-CCCcccccceeeeeEEEEeecC Confidence 33333333333211 1111 1222 4466889999998888899875 No 5 >protein:vir:9579 Length: 111 # NCBI annotation: gp45 # Family: family:all:1269 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862884;genbank:gi:32469476;genbank:GeneID:1461321 Probab=85.61 E-value=0.018 Score=30.10 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=73.7 Q ss_pred cchhHHHHHHHHHHHHhhcCCccccceeCCCCCccceEEEecCCCCcceehhheeEEeeeeccceeeeccChhHHHHHHh Q lcl|Aclame:pro 6 SVGPLVAARAYLLDELAARANPLPVGANPPEGEPSSYALLSRPGSDRDVFLGHFLIRVRVFDSDVVRLERNADLLHALLC 85 (139) Q Consensus 6 ~vgP~~A~raYL~~eLa~R~npLpVg~~pP~G~Pt~Yalls~~~t~~~~~l~~~LiR~RV~d~D~vrle~nA~LLH~lll 85 (139) -++=++ ..||.+.| ..||+...|++.|.+++++-|.|.+++-++.+-.+-|-+|-+--.+- -.|-..+. T Consensus 1 miE~~v--~~~L~~~l-----~vpv~~~vp~~~P~~FV~vErtGG~~~~~~~~p~laVq~wg~S~~~A----a~La~~v~ 69 (111) T protein:vir:95 1 MIEIII--NKYLDGHL-----DVPSFFEHEAEAPDSFVIIQKTGGKERNHSGSATFAFQSYAPTMQKA----AELNVKVK 69 (111) T ss_pred ChHHhH--HHHhhhhc-----CeeEEeecCCCCCCceEEEEeeCCccccccccceEEEEeccccHHHH----HHHHHHHH Confidence 112111 34554433 38999999999999999999999999999988889999997754433 33333333 Q ss_pred hhhhceeecCCCceEeeecccccCCcccCCCCCCcccceeeeeeeee Q lcl|Aclame:pro 86 GANHRKVHTPEGDVWITGAAHHYGPADLDDPDVPLFGMQAAVFWTIG 132 (139) Q Consensus 86 ~A~~~kiv~peG~vwitga~H~~GPadlDD~~vplfG~~~aVFWTig 132 (139) -|+.+- .+.--|.+.++ =|+-++-|+++.-+=+|+.+=-|+= T Consensus 70 ~a~~~l----~~~~~i~~v~~-~s~ynf~d~~tk~~RYQ~~~~i~~~ 111 (111) T protein:vir:95 70 SAVKGL----IELDSICGVHL-NSDYNFTDTETKQYRYQAVFDINYF 111 (111) T ss_pred HHHhhh----hcccccccccc-CCccccCCCCCCCceEEEEEEEEeC Confidence 333222 23333555544 4599999999999988876644333 No 6 >protein:vir:94768 Length: 111 # NCBI annotation: unknown # Family: family:all:1269 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996711;genbank:gi:45597426;genbank:GeneID:2769040 Probab=74.96 E-value=0.15 Score=25.07 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=73.0 Q ss_pred cchhHHHHHHHHHHHHhhcCCccccceeCCCCCccceEEEecCCCCcceehhheeEEeeeeccceeeeccChhHHHHHHh Q lcl|Aclame:pro 6 SVGPLVAARAYLLDELAARANPLPVGANPPEGEPSSYALLSRPGSDRDVFLGHFLIRVRVFDSDVVRLERNADLLHALLC 85 (139) Q Consensus 6 ~vgP~~A~raYL~~eLa~R~npLpVg~~pP~G~Pt~Yalls~~~t~~~~~l~~~LiR~RV~d~D~vrle~nA~LLH~lll 85 (139) -++=+ -..||...| | .||....|++.|.+++++-|.|.+++-++.+-.+-|-+|-+-.. .|-.|--.+. T Consensus 1 miE~~--v~~~L~~~l---~--vpv~~e~p~~~p~~FV~vErtGG~~~~~~~~~~lAVQ~~~~S~~----eAa~La~~v~ 69 (111) T protein:vir:94 1 MIEII--IKNFLDTHL---S--VSSFLEKKGEMPLSYVLFEKTGSSKSNHLLSSTFAFQSYAPSMY----EAAKLNEQLK 69 (111) T ss_pred ChHHh--HHHHHhhcC---C--cceEeecCCCCCCceEEEEecCCccccccccceEEEEecchhHH----HHHHHHHHHH Confidence 11211 134555555 3 78999999999999999999999999999999999999987654 4555555555 Q ss_pred hhhhceeecCCCceEeeecccccCCcccCCCCCCcccceeeeeeeee Q lcl|Aclame:pro 86 GANHRKVHTPEGDVWITGAAHHYGPADLDDPDVPLFGMQAAVFWTIG 132 (139) Q Consensus 86 ~A~~~kiv~peG~vwitga~H~~GPadlDD~~vplfG~~~aVFWTig 132 (139) .|+.+-.-.|+ |.+. |.=+.-++-|+++.=+=+|+-+=-+.= T Consensus 70 ~~~~~l~~~~~----i~~v-~~~s~Ynf~d~~tk~~RYQav~~i~~~ 111 (111) T protein:vir:94 70 EVVERLIELNE----ISNV-SLNSDYNFTDTETKEYRYQAVFDINHY 111 (111) T ss_pred HHHhhcccccc----ccee-ecCCCcccCCCcCCCceEEEEEEEeeC Confidence 55533333332 3333 444457788888877777765411111 No 7 >protein:vir:1643 Length: 111 # NCBI annotation: hypothetical protein # Family: family:all:1269 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695064;genbank:gi:23455755;genbank:GeneID:955492 Probab=66.16 E-value=0.27 Score=23.68 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=71.9 Q ss_pred cchhHHHHHHHHHHHHhhcCCccccceeCCCCCccceEEEecCCCCcceehhheeEEeeeeccceeeeccChhHHHHHHh Q lcl|Aclame:pro 6 SVGPLVAARAYLLDELAARANPLPVGANPPEGEPSSYALLSRPGSDRDVFLGHFLIRVRVFDSDVVRLERNADLLHALLC 85 (139) Q Consensus 6 ~vgP~~A~raYL~~eLa~R~npLpVg~~pP~G~Pt~Yalls~~~t~~~~~l~~~LiR~RV~d~D~vrle~nA~LLH~lll 85 (139) -++=++ ..||...| | .||....|++.|.+++++-|.|.+.+-++.+-.+-|-+|-+--. .|-.|--++. T Consensus 1 miE~~i--~~~L~~~l---~--Vpv~~e~p~~~P~~FV~vErtGG~~~~~~~~~~lAVq~w~~S~~----eAa~La~~v~ 69 (111) T protein:vir:16 1 MIEIII--KNFLDTHL---S--VSSFLEKKGEMPLSYILFEKTGSSKSNHLLSSTFAFQSYAPSMY----EAAKLNEQLK 69 (111) T ss_pred ChHHhH--HHHHhhcC---C--ceeEeecCCCCCCceEEEEecCCccccccccceEEEEecchhHH----HHHHHHHHHH Confidence 122222 35666555 3 78999999999999999999999999999999999999977544 4444544455 Q ss_pred hhhhceeecCCCceEeeecccccCCcccCCCCCCcccceeeeeeeee Q lcl|Aclame:pro 86 GANHRKVHTPEGDVWITGAAHHYGPADLDDPDVPLFGMQAAVFWTIG 132 (139) Q Consensus 86 ~A~~~kiv~peG~vwitga~H~~GPadlDD~~vplfG~~~aVFWTig 132 (139) .|+.+-.-.| -|.+..+ =+.-++-|+++.=+=+|+-+=-+.= T Consensus 70 ~~l~~l~~~~----~I~av~~-~s~ynf~d~~tk~~RYQav~~i~~~ 111 (111) T protein:vir:16 70 EVVERLIELN----EISNVSL-NSDYNFTDTETKEYRYQAVFDINHY 111 (111) T ss_pred HHHhhccccc----cceeeec-CCCCcCCCCCCCCceEEEEEEEeeC Confidence 5553333333 2444333 3346777777777777754311111 No 8 >protein:vir:97070 Length: 118 # NCBI annotation: hypothetical protein # Family: family:all:3244 # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453569;genbank:gi:84662604;genbank:GeneID:5142485 Probab=55.02 E-value=0.43 Score=22.61 Aligned_cols=107 Identities=17% Similarity=0.263 Sum_probs=62.2 Q ss_pred CcccCcchhHHHHHHHHHHHHhhc-CCccccceeCCCCCcc-ceEEEecCCCCcceehhh-------eeEEeeeecccee Q lcl|Aclame:pro 1 MTLVPSVGPLVAARAYLLDELAAR-ANPLPVGANPPEGEPS-SYALLSRPGSDRDVFLGH-------FLIRVRVFDSDVV 71 (139) Q Consensus 1 ~~l~P~vgP~~A~raYL~~eLa~R-~npLpVg~~pP~G~Pt-~Yalls~~~t~~~~~l~~-------~LiR~RV~d~D~v 71 (139) |++-. =|...|++- ++.+=- -..|+|.|. +|++.++++.....+|.. ..+.+-||....- T Consensus 1 M~~e~----------~l~a~L~~~~~~Rvyp-~~aP~~~~~~Pyiv~q~vsg~p~~~ldG~~~~~~~~rvQIdvyA~t~~ 69 (118) T protein:vir:97 1 MSYGR----------MLKDLLDPVFSGRVYA-DIPPDSPPLDAYAIYQRVGGVPVYWKEGGMPDKVNARVQVQIWSRSKQ 69 (118) T ss_pred CchHH----------HHHHHHhhhcCCcccc-ccCCCCCCcCCEEEEEecCCcccccccCCCCCccceeEEEEEeeCCHH Confidence 54422 223333332 111211 234788884 999999999987777722 4577888887765 Q ss_pred eeccChhHHHHHHhhhhhceeecCCCceEeeecccccCCcccCCCCCCcccc--eeeeeeeee Q lcl|Aclame:pro 72 RLERNADLLHALLCGANHRKVHTPEGDVWITGAAHHYGPADLDDPDVPLFGM--QAAVFWTIG 132 (139) Q Consensus 72 rle~nA~LLH~lll~A~~~kiv~peG~vwitga~H~~GPadlDD~~vplfG~--~~aVFWTig 132 (139) .-.+-++.+..+|.... ... +.| .|.|.-|+++-|+|. ..+|.|.-+ T Consensus 70 ~A~~l~~av~~al~~~~----~~~-----~~~-----~~~~~ye~dt~lyr~~~Df~iw~~~~ 118 (118) T protein:vir:97 70 EAYLATVQVLRIVSEAN----DMQ-----VLS-----QPIDDYVRELKLYGSRVDISMWYNLT 118 (118) T ss_pred HHHHHHHHHHHHhhccc----ccc-----ccc-----CCcccccccCCceEEEEEEEEEeecC Confidence 55555555555554431 110 111 344566788899985 568877766 No 9 >protein:vir:81066 Length: 118 # NCBI annotation: p13 # Family: family:all:3244 # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285683;genbank:gi:148727191;genbank:GeneID:5247111 Probab=42.56 E-value=0.88 Score=20.89 Aligned_cols=108 Identities=17% Similarity=0.272 Sum_probs=63.1 Q ss_pred CcccCcchhHHHHHHHHHHHHhhcCCccccceeCCCCCc-cceEEEecCCCCcceehh-------heeEEeeeeccceee Q lcl|Aclame:pro 1 MTLVPSVGPLVAARAYLLDELAARANPLPVGANPPEGEP-SSYALLSRPGSDRDVFLG-------HFLIRVRVFDSDVVR 72 (139) Q Consensus 1 ~~l~P~vgP~~A~raYL~~eLa~R~npLpVg~~pP~G~P-t~Yalls~~~t~~~~~l~-------~~LiR~RV~d~D~vr 72 (139) |++=+-+- +=|...+..|=.| -..|+|.| ++|++.++++.....+|. +..+.+-||....-. T Consensus 1 Ms~e~~l~------a~L~~~~~~Rvyp----~~aP~~~~~~Pyiv~q~vsg~p~~~l~G~~~~~~~~rvQIdvyA~t~~~ 70 (118) T protein:vir:81 1 MSYGRVLK------DLLDPVFSGRVYA----DIPPDSPPLDAYAIYQRVGGVPVYWQEGGMPEKVNARVQIQIWSRSKQE 70 (118) T ss_pred CchHHHHH------HHHHhhcCCcccc----ccCCCCCccCceEEEEecCCcccccccCCCCCccceeEEEEEeeCCHHH Confidence 66543321 2222222333333 23378888 499999999988776662 255778888877666 Q ss_pred eccChhHHHHHHhhhhhceeecCCCceEeeecccccCCcccCCCCCCccccee--eeeeeee Q lcl|Aclame:pro 73 LERNADLLHALLCGANHRKVHTPEGDVWITGAAHHYGPADLDDPDVPLFGMQA--AVFWTIG 132 (139) Q Consensus 73 le~nA~LLH~lll~A~~~kiv~peG~vwitga~H~~GPadlDD~~vplfG~~~--aVFWTig 132 (139) -.+-++.+..+|..... ...| | +|.|.-|+++-|++... +|.+..+ T Consensus 71 A~~l~~av~~al~~~~~-------~~~~--~-----~~~d~ye~dt~l~r~~~Df~iw~~~~ 118 (118) T protein:vir:81 71 AYLATVQVLRLVSEAPD-------MQVL--S-----QPIDDYVREIKLYGSRVDVSMWYPIT 118 (118) T ss_pred HHHHHHHHHHHhhhccc-------eeec--c-----CCccccccccCceeEEEEEEEEecCC Confidence 55555556666544321 0111 1 34566678889998754 5566666 No 10 >protein:vir:9764 Length: 111 # NCBI annotation: hypothetical protein # Family: family:all:1269 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795526;genbank:gi:28876278;genbank:GeneID:1257819 Probab=40.28 E-value=0.98 Score=20.64 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=74.8 Q ss_pred cchhHHHHHHHHHHHHhhcCCccccceeCCCCCccceEEEecCCCCcceehhheeEEeeeeccceeeeccChhHHHHHHh Q lcl|Aclame:pro 6 SVGPLVAARAYLLDELAARANPLPVGANPPEGEPSSYALLSRPGSDRDVFLGHFLIRVRVFDSDVVRLERNADLLHALLC 85 (139) Q Consensus 6 ~vgP~~A~raYL~~eLa~R~npLpVg~~pP~G~Pt~Yalls~~~t~~~~~l~~~LiR~RV~d~D~vrle~nA~LLH~lll 85 (139) -++=++ ..||++.| ..||...-|+++|.+|+++-+.|.+.+-++.+-.+-+-+|-+-.. .|-.|-..+. T Consensus 1 mIE~~i--~~yL~~~l-----~vpv~~e~p~~~P~~FV~vEkTGG~~~~~~~~a~lAvQsyg~S~~----~AA~La~~V~ 69 (111) T protein:vir:97 1 MIEVII--KKYLDEHL-----DVPSFFEHQKDEPARFIILEKTSGAKQNHLLSSTFAFQSYAESLY----EAALLNDKVK 69 (111) T ss_pred Chhhhh--hHHHhhhc-----CceEEEeecCCCCCceEEEEeeCCccccccccceEEEEecchhHH----HHHHHHHHHH Confidence 223222 35777766 458999999999999999999999999999999999999976543 4555555566 Q ss_pred hhhhceeecCC-CceEeeecccccCCcccCCCCCCcccceeeeeeeeee Q lcl|Aclame:pro 86 GANHRKVHTPE-GDVWITGAAHHYGPADLDDPDVPLFGMQAAVFWTIGL 133 (139) Q Consensus 86 ~A~~~kiv~pe-G~vwitga~H~~GPadlDD~~vplfG~~~aVFWTigL 133 (139) .|+-+-+-.|+ +.|-+++. -++-|+++-=+=+|+-+=-++ . T Consensus 70 ~a~~~l~~l~~i~~v~lns~------Ynf~d~~tk~yRYQa~~di~~-~ 111 (111) T protein:vir:97 70 QVIEQLDVLPQVSGVHLNAD------YNFTDTATKRYRYQAVFDINH-Y 111 (111) T ss_pred HHhhhhccCccceeeeeccc------ccCCCCCCCCccEEEEEEEee-C Confidence 66665555665 66666654 467777765555554321111 1 No 11 >protein:vir:1892 Length: 121 # NCBI annotation: gp11 # Family: family:all:896 # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037672;genbank:gi:9634130;genbank:GeneID:1262490 Probab=33.78 E-value=1.3 Score=19.90 Aligned_cols=112 Identities=18% Similarity=0.318 Sum_probs=69.8 Q ss_pred ccCcchhHHHHHHHHHHHHhhcCCcc---ccceeCCCCCccceEEEecCCCCcceehh------heeEEeeeeccceeee Q lcl|Aclame:pro 3 LVPSVGPLVAARAYLLDELAARANPL---PVGANPPEGEPSSYALLSRPGSDRDVFLG------HFLIRVRVFDSDVVRL 73 (139) Q Consensus 3 l~P~vgP~~A~raYL~~eLa~R~npL---pVg~~pP~G~Pt~Yalls~~~t~~~~~l~------~~LiR~RV~d~D~vrl 73 (139) +.||+=-+..+-+=+...|.. +|. |.| ..|+|.|.+|+..++++.....+|. +..+.+=||...--+ T Consensus 1 m~~~i~~~l~~d~~v~allg~--~~~Rvyp~~-~aP~~~~~Pyiv~q~vsg~p~~~l~G~~~~~~~~vQIDvyA~t~~~- 76 (121) T protein:vir:18 1 MIAPIFSVCASSPEVTDLLGS--NPVRIYPFG-IQDDNVVYPYVVWQNITGSPENYIAQRPDADFFTLQVDAYADTVDE- 76 (121) T ss_pred CchHHHHHHhcChhhhhhhcC--CCceeeecc-CCCCcCcCCeEEEEEecCcccceecCCCCcceeEEEEEeecCCHHH- Confidence 567777777777777777643 332 323 3488999999999999998877776 345566666554322 Q ss_pred ccChhHHHHHHhhhhhceeecCCCceEeeecccccCCcccCCCCCCcccceeeeeeeeee Q lcl|Aclame:pro 74 ERNADLLHALLCGANHRKVHTPEGDVWITGAAHHYGPADLDDPDVPLFGMQAAVFWTIGL 133 (139) Q Consensus 74 e~nA~LLH~lll~A~~~kiv~peG~vwitga~H~~GPadlDD~~vplfG~~~aVFWTigL 133 (139) |.-|=+++..|... .+ .+++ +++ +.-|+|+-+++...=|=|.+.- T Consensus 77 ---A~~l~~avr~Ale~-----~~--~~~~----~~~-~~ye~dT~lyR~s~Dv~~~~~r 121 (121) T protein:vir:18 77 ---VIAVATALRDAIEP-----HA--HITR----WGG-QERDPETKRYRYSFDVDWIVTR 121 (121) T ss_pred ---HHHHHHHHHHHhhh-----cC--cccC----CCC-CCCcccccceeeeeEEEEeecC Confidence 22233333333321 11 1111 232 3467889999998889999875 No 12 >protein:vir:1438 Length: 115 # NCBI annotation: hypothetical protein # Family: family:all:2712 # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536367;genbank:gi:17975172;genbank:GeneID:929144 Probab=27.84 E-value=1 Score=20.53 Aligned_cols=105 Identities=19% Similarity=0.187 Sum_probs=54.0 Q ss_pred CcccCcchhHHHHHHHHHHHHhhcCCccccceeCCCCCccceEEEecCCCCcceehh------heeEEeeeeccceeeec Q lcl|Aclame:pro 1 MTLVPSVGPLVAARAYLLDELAARANPLPVGANPPEGEPSSYALLSRPGSDRDVFLG------HFLIRVRVFDSDVVRLE 74 (139) Q Consensus 1 ~~l~P~vgP~~A~raYL~~eLa~R~npLpVg~~pP~G~Pt~Yalls~~~t~~~~~l~------~~LiR~RV~d~D~vrle 74 (139) |.++ -.|+=|.---.-|-.| | ..|+|.|.+|+..++++...+..|. ++-+.+=||-+..=+-. T Consensus 1 ~~~~-------~i~~aL~~l~~~RVyp---~-~aP~~~~~Pyiv~q~vsg~p~~~L~G~~~~~~~~vQIDvyA~t~~~A~ 69 (115) T protein:vir:14 1 MSVI-------VIRDALQGIGGAKGYL---G-VAPAKAPAPYFVVTRVHGALDMALAGLTGGRSGSYQIDCYAPTFTDAD 69 (115) T ss_pred CeeE-------eeehhhcccccccccc---c-cCCCCCCCCEEEEEeecCcccccccCCCCCcceEEEEEEeeCCHHHHH Confidence 3221 1111111111112221 2 3579999999999999988887773 56666667754332222 Q ss_pred cChhHHHHHHhhhhhceeecCCCceEeeecccccC---CcccCCCCCCcccceeeee-ee Q lcl|Aclame:pro 75 RNADLLHALLCGANHRKVHTPEGDVWITGAAHHYG---PADLDDPDVPLFGMQAAVF-WT 130 (139) Q Consensus 75 ~nA~LLH~lll~A~~~kiv~peG~vwitga~H~~G---PadlDD~~vplfG~~~aVF-WT 130 (139) +.++.....+.... . ..+.+| +.|.-|+++-|++...=+. |. T Consensus 70 ~l~~~v~~~~~~~~--------~------~~~~~~~~~~~d~ye~dt~lyR~s~D~~vWf 115 (115) T protein:vir:14 70 RLADLAVDRAMSVQ--------D------RFSVGGVDELPDDYSEDTGLFRISLELSVEF 115 (115) T ss_pred HHHHHHHHHHhcCc--------c------ceeeeeecCCCCCCcccccceeeEEEEEEeC Confidence 22333322222211 1 122222 3355568888998776666 76 No 13 >protein:vir:100116 Length: 115 # NCBI annotation: gp10 # Family: family:all:2712 # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945040;genbank:gi:38707900;genbank:GeneID:2744163 Probab=26.17 E-value=1.1 Score=20.36 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=53.6 Q ss_pred Cccc---CcchhHHHHHHHHHHHHhhcCCccccceeCCCCCccceEEEecCCCCcceehh------heeEEeeeecccee Q lcl|Aclame:pro 1 MTLV---PSVGPLVAARAYLLDELAARANPLPVGANPPEGEPSSYALLSRPGSDRDVFLG------HFLIRVRVFDSDVV 71 (139) Q Consensus 1 ~~l~---P~vgP~~A~raYL~~eLa~R~npLpVg~~pP~G~Pt~Yalls~~~t~~~~~l~------~~LiR~RV~d~D~v 71 (139) |.++ =-+.|+... |-.| | ..|+|+|.+|+..++++...+.+|. ++-+.+=||-...= T Consensus 1 ~~~~~i~~aL~~l~~~----------RVyp---~-~aP~~~~~Pyiv~q~vsg~p~~~L~G~~~~~~~~vQIDvyA~t~~ 66 (115) T protein:vir:10 1 MSVIVIRDALQGIGGA----------KGYL---G-VAPEKAPAPYFVVTRVHGALDMALAGLTGGRSGSYQIDCYAPTFT 66 (115) T ss_pred CeeEEeehhhcccCCc----------eeec---c-cCCCCCCCCEEEEEeecCccccccCCCCCCcceEEEEEEeeCCHH Confidence 3221 111111111 2221 2 3589999999999999988887773 56666666754332 Q ss_pred eeccChhHHHHHHhhhhhceeecCCCceEeeecccccC---CcccCCCCCCcccceeeee-ee Q lcl|Aclame:pro 72 RLERNADLLHALLCGANHRKVHTPEGDVWITGAAHHYG---PADLDDPDVPLFGMQAAVF-WT 130 (139) Q Consensus 72 rle~nA~LLH~lll~A~~~kiv~peG~vwitga~H~~G---PadlDD~~vplfG~~~aVF-WT 130 (139) +-...++....++.... .. .+.+| +.|.-|+++-|++...=+. |. T Consensus 67 ~A~~l~~~v~~~~~~~~--------~~------~~~~~~~~~~d~ye~dt~lyR~s~D~~vWf 115 (115) T protein:vir:10 67 DADRLADLAVDRAMSVQ--------DR------FSVGGVDELPDDYSEDTGLFRISLELSVEF 115 (115) T ss_pred HHHHHHHHHHHHHhcCc--------cc------eeEeeecCCCCCCcccccceeeEEEEEEeC Confidence 22222333222221111 11 22222 3355668888998877666 77 Done!