Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : pYD38-B | Genbank acc : NC_021561

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 57

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	49	lcl\|NC_021561.1_cdsid_YP_008130264.1	HHsearch (proba=100.00%)
Portal	42	lcl\|NC_021561.1_cdsid_YP_008130257.1	HHsearch (proba=100.00%)
TermL	37	lcl\|NC_021561.1_cdsid_YP_008130252.1	Blast (e-value=1e-34)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	51	lcl\|NC_021561.1_cdsid_YP_008130266.1	HHsearch (proba=100.00%)
Hc1	52	lcl\|NC_021561.1_cdsid_YP_008130267.1	HHsearch (proba=100.00%)
Ne1	53	lcl\|NC_021561.1_cdsid_YP_008130268.1	HHsearch (proba=100.00%)
Tc1	54	lcl\|NC_021561.1_cdsid_YP_008130269.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96792 protein:vir:95131 protein:vir:80446	phiHSIC PA73 BcepGomr	95 % 28 % 18 %
Portal	protein:vir:96783 protein:vir:78393 protein:vir:95014	phiHSIC SETP3 KS7	90 % 24 % 24 %
TermL	protein:vir:80106 protein:vir:99083 protein:vir:8649	B054 Qyrzula Rosebush	24 % 22 % 22 %
Ad1	protein:vir:95176 protein:vir:78383 protein:vir:95004	PA73 SETP3 KS7	36 % 33 % 31 %
Hc1	protein:vir:96807 protein:vir:104346 protein:vir:107669	phiHSIC RTP T1	92 % 28 % 26 %
Ne1	protein:vir:96774 protein:vir:78380 protein:vir:94994	phiHSIC SETP3 KS7	76 % 29 % 28 %
Tc1	protein:vir:96800 protein:vir:94921	phiHSIC Xp15	90 % 22 %