Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 5 lcl|NC_021539.1_cdsid_YP_008126701.1 HHsearch (proba=100.00%)
Portal 3 lcl|NC_021539.1_cdsid_YP_008126699.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_021539.1_cdsid_YP_008126698.1 Blast (e-value=0)
MTP 11 lcl|NC_021539.1_cdsid_YP_008126707.1 Blast (e-value=1e-102)
Sheath NOT FOUND
Ad1 7 lcl|NC_021539.1_cdsid_YP_008126703.1 HHsearch (proba=100.00%)
Hc1 8 lcl|NC_021539.1_cdsid_YP_008126704.1 HHsearch (proba=100.00%)
Ne1 10 lcl|NC_021539.1_cdsid_YP_008126706.1 HHsearch (proba=100.00%)
Tc1 9 lcl|NC_021539.1_cdsid_YP_008126705.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:4092
protein:vir:95963
protein:vir:78350
2389
2638A
B025
90 %
32 %
32 %
Portal protein:vir:4089
protein:vir:95965
protein:vir:101289
2389
2638A
phiNM3
90 %
26 %
25 %
TermL protein:vir:4088
protein:vir:101288
protein:vir:100634
2389
phiNM3
77
97 %
38 %
38 %
MTP protein:vir:4098
protein:vir:102112
protein:vir:102037
2389
phiSM101
Fah
90 %
11 %
11 %
Ad1 protein:vir:4093
protein:vir:78326
protein:vir:101300
2389
B025
phiNM3
84 %
36 %
25 %
Hc1 protein:vir:4094
protein:vir:4955
protein:vir:100226
2389
Sfi19
phi AT3
89 %
16 %
17 %
Ne1 protein:vir:4096
protein:vir:1386
protein:vir:102085
2389
phi3626
Fah
79 %
17 %
19 %
Tc1 protein:vir:4095238988 %