Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 2389 | Genbank acc : NC_003291 | Aclame index mge :86

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 57

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|Aclame:protein:vir:4092\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:4089\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:4088\|NCBI_annot:terminase	Blast (e-value=0)
MTP	10	lcl\|Aclame:protein:vir:4098\|NCBI_annot:major	Blast (e-value=1e-111)
Sheath	NOT FOUND
Ad1	6	lcl\|Aclame:protein:vir:4093\|NCBI_annot:Gp6	HHsearch (proba=100.00%)
Hc1	7	lcl\|Aclame:protein:vir:4094\|NCBI_annot:Gp7	HHsearch (proba=100.00%)
Ne1	9	lcl\|Aclame:protein:vir:4096\|NCBI_annot:Gp9	HHsearch (proba=100.00%)
Tc1	8	lcl\|Aclame:protein:vir:4095\|NCBI_annot:Gp8	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4092 protein:vir:95963 protein:vir:9643	2389 2638A 315.1	100 % 32 % 31 %
Portal	protein:vir:4089 protein:vir:95965 protein:vir:101289	2389 2638A phiNM3	100 % 27 % 26 %
TermL	protein:vir:4088 protein:vir:101288 protein:vir:100634	2389 phiNM3 77	100 % 37 % 37 %
MTP	protein:vir:4098 protein:vir:102037 protein:vir:102845	2389 Fah Cherry	100 % 11 % 11 %
Ad1	protein:vir:4093 protein:vir:78326 protein:vir:98637	2389 B025 phi3396	100 % 33 % 27 %
Hc1	protein:vir:4094 protein:vir:4955 protein:vir:1086	2389 Sfi19 bIL309	100 % 16 % 21 %
Ne1	protein:vir:4096 protein:vir:1386 protein:vir:102085	2389 phi3626 Fah	100 % 17 % 19 %
Tc1	protein:vir:4095	2389	100 %