Query lcl|NC_021539.1_cdsid_YP_008126703.1 [gene=M615_gp07] [protein=hypothetical protein] [protein_id=YP_008126703.1] [location=5333..5632] Match_columns 99 No_of_seqs 50 out of 53 Neff 4.6 Searched_HMMs 1612 Date Thu Nov 7 17:07:04 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_7 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_7_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:4093 Length: 97 # 100.0 1.7E-43 1E-46 255.1 10.7 97 1-97 1-97 (97) 2 protein:vir:78326 Length: 99 # 100.0 1.2E-40 7.5E-44 239.4 11.3 96 1-99 1-96 (99) 3 protein:vir:95982 Length: 96 # 100.0 2.2E-39 1.4E-42 232.5 11.2 95 1-98 2-96 (96) 4 protein:vir:98637 Length: 102 100.0 8.4E-38 5.2E-41 223.8 9.3 96 1-99 6-101 (102) 5 protein:vir:9645 Length: 102 # 100.0 1.1E-37 6.7E-41 223.2 9.2 96 1-99 6-101 (102) 6 protein:vir:9511 Length: 94 # 100.0 7.7E-37 4.8E-40 218.6 10.4 93 2-99 1-93 (94) 7 protein:vir:100669 Length: 94 100.0 7.7E-37 4.8E-40 218.6 10.4 93 2-99 1-93 (94) 8 protein:vir:101300 Length: 94 100.0 7.7E-37 4.8E-40 218.6 10.4 93 2-99 1-93 (94) 9 protein:vir:9706 Length: 100 # 97.7 5.5E-07 3.4E-10 54.9 9.2 93 1-96 1-100 (100) 10 protein:vir:79990 Length: 110 97.0 1.1E-05 7.1E-09 47.7 8.8 97 1-99 1-109 (110) 11 protein:vir:98340 Length: 110 97.0 1.1E-05 7.1E-09 47.7 8.8 97 1-99 1-109 (110) 12 protein:vir:4602 Length: 110 # 96.8 3.2E-05 2E-08 45.3 9.8 97 1-99 1-109 (110) 13 protein:vir:9412 Length: 110 # 96.7 2.2E-05 1.3E-08 46.2 8.2 97 1-99 1-109 (110) 14 protein:vir:4702 Length: 113 # 96.6 4.2E-05 2.6E-08 44.6 9.0 97 1-99 1-110 (113) 15 protein:vir:4954 Length: 104 # 96.3 0.00012 7.3E-08 42.1 9.8 93 1-98 1-104 (104) 16 protein:vir:105005 Length: 96 96.3 0.0001 6.2E-08 42.5 9.3 92 1-99 1-95 (96) 17 protein:vir:102863 Length: 96 96.3 0.0001 6.2E-08 42.5 9.3 92 1-99 1-95 (96) 18 protein:vir:102083 Length: 96 96.3 0.0001 6.2E-08 42.5 9.3 92 1-99 1-95 (96) 19 protein:vir:107614 Length: 96 96.3 0.0001 6.2E-08 42.5 9.3 92 1-99 1-95 (96) 20 protein:vir:4857 Length: 104 # 96.3 0.00012 7.5E-08 42.1 9.7 93 1-98 1-104 (104) 21 protein:vir:4998 Length: 106 # 95.9 0.0002 1.2E-07 40.9 9.0 94 1-99 1-105 (106) 22 protein:vir:4831 Length: 105 # 95.5 0.00045 2.8E-07 38.9 9.5 92 1-99 1-103 (105) 23 protein:vir:102158 Length: 99 94.8 0.00079 4.9E-07 37.6 8.9 91 1-99 1-99 (99) 24 protein:vir:81159 Length: 95 # 94.7 0.00046 2.8E-07 38.9 7.3 89 1-99 2-94 (95) 25 protein:vir:1271 Length: 115 # 94.3 0.00099 6.1E-07 37.1 8.2 90 6-99 1-96 (115) 26 protein:vir:100211 Length: 114 94.0 0.0018 1.1E-06 35.7 9.0 96 1-98 5-114 (114) 27 protein:vir:95774 Length: 115 92.2 0.0025 1.6E-06 34.8 7.2 93 1-99 1-108 (115) 28 protein:vir:1887 Length: 108 # 91.0 0.0041 2.6E-06 33.6 7.1 97 1-99 3-108 (108) 29 protein:vir:192 Length: 108 # 91.0 0.0041 2.6E-06 33.6 7.1 97 1-99 3-108 (108) 30 protein:vir:95374 Length: 93 # 90.6 0.0056 3.5E-06 32.9 7.4 91 1-95 1-93 (93) 31 protein:vir:100103 Length: 120 89.1 0.0038 2.4E-06 33.8 5.3 86 1-91 5-120 (120) 32 protein:vir:1384 Length: 92 # 88.7 0.011 6.6E-06 31.4 7.4 84 6-97 1-92 (92) 33 protein:vir:80144 Length: 91 # 88.5 0.01 6.2E-06 31.5 7.2 89 1-93 1-91 (91) 34 protein:vir:964 Length: 93 # N 88.0 0.02 1.3E-05 29.8 8.5 91 1-96 1-93 (93) 35 protein:vir:4512 Length: 107 # 87.4 0.0096 6E-06 31.6 6.3 88 1-91 1-107 (107) 36 protein:vir:4458 Length: 107 # 87.2 0.016 9.7E-06 30.5 7.4 82 1-99 1-86 (107) 37 protein:vir:7410 Length: 107 # 85.3 0.024 1.5E-05 29.5 7.4 91 1-99 1-104 (107) 38 protein:vir:486 Length: 107 # 84.7 0.022 1.4E-05 29.7 6.9 86 1-99 1-86 (107) 39 protein:vir:100245 Length: 113 84.4 0.043 2.7E-05 28.1 8.4 86 1-91 1-113 (113) 40 protein:vir:6213 Length: 86 # 82.6 0.065 4E-05 27.1 8.5 86 4-98 1-86 (86) 41 protein:vir:99517 Length: 124 80.3 0.022 1.4E-05 29.7 5.1 94 1-99 1-108 (124) 42 protein:vir:93592 Length: 108 78.1 0.044 2.7E-05 28.0 6.0 86 1-91 3-108 (108) 43 protein:vir:9877 Length: 114 # 77.4 0.076 4.7E-05 26.7 7.2 93 1-99 1-112 (114) 44 protein:vir:9311 Length: 110 # 76.1 0.087 5.4E-05 26.4 7.1 92 5-99 1-105 (110) 45 protein:vir:97145 Length: 110 76.1 0.087 5.4E-05 26.4 7.1 92 5-99 1-105 (110) 46 protein:vir:103957 Length: 110 76.1 0.087 5.4E-05 26.4 7.1 92 5-99 1-105 (110) 47 protein:vir:96221 Length: 110 76.1 0.087 5.4E-05 26.4 7.1 92 5-99 1-105 (110) 48 protein:vir:96390 Length: 110 76.1 0.087 5.4E-05 26.4 7.1 92 5-99 1-105 (110) 49 protein:vir:99796 Length: 110 76.1 0.087 5.4E-05 26.4 7.1 92 5-99 1-105 (110) 50 protein:vir:78849 Length: 110 76.1 0.087 5.4E-05 26.4 7.1 92 5-99 1-105 (110) 51 protein:vir:106596 Length: 128 76.0 0.071 4.4E-05 26.9 6.6 95 1-99 1-126 (128) 52 protein:vir:100885 Length: 110 71.9 0.093 5.7E-05 26.2 6.2 96 1-98 1-110 (110) 53 protein:vir:9928 Length: 118 # 71.0 0.19 0.00012 24.5 7.7 93 1-99 1-113 (118) 54 protein:vir:1026 Length: 107 # 70.6 0.16 9.9E-05 25.0 7.1 91 1-99 1-101 (107) 55 protein:vir:106583 Length: 105 70.5 0.14 8.6E-05 25.3 6.8 88 1-93 1-105 (105) 56 protein:vir:10365 Length: 115 70.5 0.12 7.5E-05 25.6 6.5 88 2-92 1-115 (115) 57 protein:vir:3992 Length: 107 # 66.8 0.26 0.00016 23.8 8.0 91 1-99 1-103 (107) 58 protein:vir:94507 Length: 113 62.2 0.3 0.00019 23.4 6.9 92 5-99 1-109 (113) 59 protein:vir:3970 Length: 110 # 57.2 0.13 8.4E-05 25.4 4.1 87 1-99 1-105 (110) 60 protein:vir:3846 Length: 126 # 54.9 0.49 0.00031 22.3 7.3 96 1-99 5-124 (126) 61 protein:vir:4904 Length: 113 # 54.5 0.4 0.00025 22.8 6.2 90 1-99 1-111 (113) 62 protein:vir:3615 Length: 110 # 46.4 0.27 0.00017 23.7 3.9 86 5-99 1-103 (110) 63 protein:vir:3871 Length: 99 # 42.1 0.49 0.0003 22.3 4.6 82 13-99 1-98 (99) 64 protein:vir:1435 Length: 188 # 40.5 0.04 2.5E-05 28.2 -1.5 78 1-99 6-93 (188) 65 protein:vir:2738 Length: 112 # 39.0 1 0.00065 20.5 6.3 90 1-99 1-110 (112) 66 protein:vir:80320 Length: 188 37.6 0.08 5E-05 26.6 -0.4 83 1-99 4-93 (188) 67 protein:vir:741 Length: 110 # 36.0 1.2 0.00074 20.2 7.0 89 5-99 1-103 (110) 68 protein:vir:96488 Length: 113 35.0 1.3 0.00078 20.0 5.9 90 1-99 1-111 (113) 69 protein:vir:81069 Length: 115 29.1 1.7 0.001 19.3 6.5 88 2-92 1-115 (115) No 1 >protein:vir:4093 Length: 97 # NCBI annotation: Gp6 protein # Family: family:all:786 # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510987;swissprot:trembl:q8w603;genbank:gi:17488509;uniprot:Q8W603;genbank:GeneID:1260315 Probab=100.00 E-value=1.7e-43 Score=255.10 Aligned_cols=97 Identities=84% Similarity=1.226 Sum_probs=95.8 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHHHHHHHHHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFEYFQENFIS 80 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale~F~~Nf~~ 80 (99) |+||++||++||+||||||++++||++|++||++|+++|+++||++|||++++.+|+|||+||||+||||||+|++||++ T Consensus 1 m~~~~~lL~e~K~rl~I~~~~e~eD~~L~~~l~~s~~~l~~~~G~~fd~~~~~~~keLv~er~RY~yndalE~F~~Nf~~ 80 (97) T protein:vir:40 1 MQVSDELLQEVKDYLHITWSDETEDKRIRKIIERVSARISQLTGVSFTFEKEDAAKQLLFDGVRYVNNNSYEYFQQNFIC 80 (97) T ss_pred CCCcHHHHHHHHhhccccCCCCcchhHHHHHHHHHHHHHHHhhCccccCCCcchHHHHHHHHHHHHhcccHHHHHHhHHH Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999 Q ss_pred HHHHHHHHHhhcccccC Q lcl|NC_021539. 81 EIQSLQFDVAVNVNAES 97 (99) Q Consensus 81 ei~~l~l~~~~~e~~~~ 97 (99) +|++|||++++++.+++ T Consensus 81 el~~l~l~~~~~e~~~~ 97 (97) T protein:vir:40 81 EIQSLQFDVAVNINAEG 97 (97) T ss_pred HHHHHHHHHHHhhhccC Confidence 99999999999999998 No 2 >protein:vir:78326 Length: 99 # NCBI annotation: gp7 # Family: family:all:786 # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468646;genbank:gi:157325224;genbank:GeneID:5601672 Probab=100.00 E-value=1.2e-40 Score=239.43 Aligned_cols=96 Identities=36% Similarity=0.645 Sum_probs=93.7 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHHHHHHHHHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFEYFQENFIS 80 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale~F~~Nf~~ 80 (99) |+||++||++||+||||||++ ||++|++||++|+++|+++|| +|||+.++.||+|||+||||+||+|||+|++||++ T Consensus 1 m~~~~~lLee~K~~l~I~~~~--ED~~L~~~l~~s~~~l~~~~G-~fd~~~~~~~keLl~er~RY~yndale~F~~Nf~~ 77 (99) T protein:vir:78 1 MEVSDDLLKKFKERMHISHNS--EDSNLKELLSFSIADLQEKCG-LFNVDEHVRARELVIDRTRYAYNDSIEFFNENFQS 77 (99) T ss_pred CCCcHHHHHHHHHhcCCCCCC--chHHHHHHHHHHHHHHHhhcC-CCCCCccchHHHHHHHHHHHHHcccHHHHHHHHHH Confidence 999999999999999999975 799999999999999999999 79999999999999999999999999999999999 Q ss_pred HHHHHHHHHhhcccccCCC Q lcl|NC_021539. 81 EIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 81 ei~~l~l~~~~~e~~~~~s 99 (99) +|++|||+.++++.+++++ T Consensus 78 eI~~l~l~~~~~e~~~~d~ 96 (99) T protein:vir:78 78 QITSLGFSLYVAESGESDE 96 (99) T ss_pred HHHHHHHHHhhhccccccc Confidence 9999999999999999999 No 3 >protein:vir:95982 Length: 96 # NCBI annotation: ORF036 # Family: family:all:786 # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239803;genbank:gi:66395481;genbank:GeneID:5132899 Probab=100.00 E-value=2.2e-39 Score=232.51 Aligned_cols=95 Identities=19% Similarity=0.490 Sum_probs=91.6 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHHHHHHHHHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFEYFQENFIS 80 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale~F~~Nf~~ 80 (99) -+||++||++||+||||||++ ||++|++||++|+++|+++|| +|||+.++.||||||+||||+||+|||+|++||++ T Consensus 2 ~~is~~lL~efK~rl~I~~~~--ED~nL~~~l~~s~~~l~~~~G-~fd~~~~~~~keLvfer~RY~yndalE~F~~NF~~ 78 (96) T protein:vir:95 2 ENITNDLLKQFKAFAKINHDT--EDEYLKNLLTKSYSNLISRFG-EFSITENLEGQDLVFARTRYAYEDLTEYFNDNYRD 78 (96) T ss_pred ccCcHHHHHHHHHhcCCCCCc--hhHHHHHHHHHHHHHHHHhhc-cCCCCcchhHHHHHHHHHHHHhhhhHHHHHHHHHH Confidence 479999999999999999876 799999999999999999999 79999999999999999999999999999999999 Q ss_pred HHHHHHHHHhhcccccCC Q lcl|NC_021539. 81 EIQSLQFDVAVNVNAESQ 98 (99) Q Consensus 81 ei~~l~l~~~~~e~~~~~ 98 (99) +|++|+|+++++++..++ T Consensus 79 eI~~l~l~~~~~e~~~~e 96 (96) T protein:vir:95 79 DLINFGLNNVLGSGISEK 96 (96) T ss_pred HHHHHHHHHhhhcccCCC Confidence 999999999999988888 No 4 >protein:vir:98637 Length: 102 # NCBI annotation: hypothetical protein # Family: family:all:786 # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039925;genbank:gi:126011100;genbank:GeneID:4818473 Probab=100.00 E-value=8.4e-38 Score=223.84 Aligned_cols=96 Identities=23% Similarity=0.396 Sum_probs=88.0 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHHHHHHHHHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFEYFQENFIS 80 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale~F~~Nf~~ 80 (99) -+||++||++||+||||||++++||++|++||++|+++|+++|| +|+++ +.+|+|||+||||+||+|||+|++||++ T Consensus 6 ~~i~e~lL~efK~rl~I~~~~d~ED~~L~~~l~~s~~~l~~~~G-~fd~~--~~~keLvfer~RY~yndalE~F~~NF~~ 82 (102) T protein:vir:98 6 QEVTEKYLAAFKTRMRIFDSDEEEDKNVSSMLSASIKAVANLTG-ATEAS--EELLELAFERARYVYYDALDEFQKNYAD 82 (102) T ss_pred HHHhHHHHHHHHHhhcccCCCccchHHHHHHHHHHHHHHHhhhc-ccCCc--hhHHHHHHHHHHHHHhhhHHHHHHHHHH Confidence 57899999999999999999888999999999999999999999 67664 5699999999999999999999999999 Q ss_pred HHHHHHHHHhhcccccCCC Q lcl|NC_021539. 81 EIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 81 ei~~l~l~~~~~e~~~~~s 99 (99) +|++|||++++++..+-.- T Consensus 83 ei~~l~l~~~~~~~ee~~~ 101 (102) T protein:vir:98 83 EIETLYLTNKYKDIEELSH 101 (102) T ss_pred HHHHHHHHHHHHHHHhhcc Confidence 9999999999976655444 No 5 >protein:vir:9645 Length: 102 # NCBI annotation: hypothetical protein # Family: family:all:786 # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795407;genbank:gi:28876180;genbank:GeneID:1257718 Probab=100.00 E-value=1.1e-37 Score=223.24 Aligned_cols=96 Identities=23% Similarity=0.393 Sum_probs=87.4 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHHHHHHHHHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFEYFQENFIS 80 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale~F~~Nf~~ 80 (99) -+||++||++||+||||||++++||++|++||++|+++|+++|| +|+++ +.+|+|||+||||+||+|||+|++||++ T Consensus 6 ~~i~~~lL~efK~rl~I~~~~d~ED~~L~~~l~~s~~~l~~~~G-~fd~~--~~~keLvfer~RY~yndalE~F~~NF~~ 82 (102) T protein:vir:96 6 QEVTNKYLAAFKTRMRIFDSDEEEDKNVSSMLSASIKAVANLTG-ATEAS--EELLELAFERARYVYCDALDEFQKNYAD 82 (102) T ss_pred HHHhHHHHHHHHHhhcccCCCccchHHHHHHHHHHHHHHhhhhc-ccCCc--hhHHHHHHHHHHHHhhhhHHHHHHHHHH Confidence 45699999999999999999888999999999999999999999 67664 5799999999999999999999999999 Q ss_pred HHHHHHHHHhhcccccCCC Q lcl|NC_021539. 81 EIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 81 ei~~l~l~~~~~e~~~~~s 99 (99) +|++|+|++++++..+-.- T Consensus 83 ei~~l~l~~~~~e~e~~~~ 101 (102) T protein:vir:96 83 EIETLYLTNKYKDIEELSH 101 (102) T ss_pred HHHHHHHHHHHHHHHhhcc Confidence 9999999999976655444 No 6 >protein:vir:9511 Length: 94 # NCBI annotation: hypothetical protein # Family: family:all:786 # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835558;genbank:gi:30043949;genbank:GeneID:1260539 Probab=100.00 E-value=7.7e-37 Score=218.57 Aligned_cols=93 Identities=25% Similarity=0.457 Sum_probs=84.5 Q ss_pred CCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHHHHHHHHHHH Q lcl|NC_021539. 2 QVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFEYFQENFISE 81 (99) Q Consensus 2 ~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale~F~~Nf~~e 81 (99) =||++||++||+||||||++ ||++|++||++|+++|+++|| +|+|+ +.++|||||+||||+||+|||+|++||+++ T Consensus 1 m~~~~lL~efK~rl~I~~~~--ED~nL~~~l~~s~~~l~~~~G-~f~~~-~~~~keLvfer~RY~yndalE~F~~NF~~e 76 (94) T protein:vir:95 1 MTIDDLLVKFKSLEKIDHNS--EDEYLKQLLKMSYERIKNQCG-VFELE-NLIGQELILIRARYAYQDLLEHFNDNYRPE 76 (94) T ss_pred CccHHHHHHHHHhcCCCCCc--chHHHHHHHHHHHHHHhhhhc-ccCCC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHH Confidence 68999999999999999876 799999999999999999999 79996 568999999999999999999999999999 Q ss_pred HHHHHHHHhhcccccCCC Q lcl|NC_021539. 82 IQSLQFDVAVNVNAESQS 99 (99) Q Consensus 82 i~~l~l~~~~~e~~~~~s 99 (99) |++|||++++. ...+++ T Consensus 77 i~~l~l~~~e~-~~d~~~ 93 (94) T protein:vir:95 77 IIDFSLSLMEV-SEDEES 93 (94) T ss_pred HHHhhhhhccc-CCCcCC Confidence 99999999853 333344 No 7 >protein:vir:100669 Length: 94 # NCBI annotation: 77ORF042 # Family: family:all:786 # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958608;genbank:gi:41189553;genbank:GeneID:2743815 Probab=100.00 E-value=7.7e-37 Score=218.57 Aligned_cols=93 Identities=25% Similarity=0.457 Sum_probs=84.5 Q ss_pred CCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHHHHHHHHHHH Q lcl|NC_021539. 2 QVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFEYFQENFISE 81 (99) Q Consensus 2 ~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale~F~~Nf~~e 81 (99) =||++||++||+||||||++ ||++|++||++|+++|+++|| +|+|+ +.++|||||+||||+||+|||+|++||+++ T Consensus 1 m~~~~lL~efK~rl~I~~~~--ED~nL~~~l~~s~~~l~~~~G-~f~~~-~~~~keLvfer~RY~yndalE~F~~NF~~e 76 (94) T protein:vir:10 1 MTIDDLLVKFKSLEKIDHNS--EDEYLKQLLKMSYERIKNQCG-VFELE-NLIGQELILIRARYAYQDLLEHFNDNYRPE 76 (94) T ss_pred CccHHHHHHHHHhcCCCCCc--chHHHHHHHHHHHHHHhhhhc-ccCCC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHH Confidence 68999999999999999876 799999999999999999999 79996 568999999999999999999999999999 Q ss_pred HHHHHHHHhhcccccCCC Q lcl|NC_021539. 82 IQSLQFDVAVNVNAESQS 99 (99) Q Consensus 82 i~~l~l~~~~~e~~~~~s 99 (99) |++|||++++. ...+++ T Consensus 77 i~~l~l~~~e~-~~d~~~ 93 (94) T protein:vir:10 77 IIDFSLSLMEV-SEDEES 93 (94) T ss_pred HHHhhhhhccc-CCCcCC Confidence 99999999853 333344 No 8 >protein:vir:101300 Length: 94 # NCBI annotation: hypothetical protein # Family: family:all:786 # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908833;genbank:gi:118725097;genbank:GeneID:4555871 Probab=100.00 E-value=7.7e-37 Score=218.57 Aligned_cols=93 Identities=25% Similarity=0.457 Sum_probs=84.5 Q ss_pred CCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHHHHHHHHHHH Q lcl|NC_021539. 2 QVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFEYFQENFISE 81 (99) Q Consensus 2 ~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale~F~~Nf~~e 81 (99) =||++||++||+||||||++ ||++|++||++|+++|+++|| +|+|+ +.++|||||+||||+||+|||+|++||+++ T Consensus 1 m~~~~lL~efK~rl~I~~~~--ED~nL~~~l~~s~~~l~~~~G-~f~~~-~~~~keLvfer~RY~yndalE~F~~NF~~e 76 (94) T protein:vir:10 1 MTIDDLLVKFKSLEKIDHNS--EDEYLKQLLKMSYERIKNQCG-VFELE-NLIGQELILIRARYAYQDLLEHFNDNYRPE 76 (94) T ss_pred CccHHHHHHHHHhcCCCCCc--chHHHHHHHHHHHHHHhhhhc-ccCCC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHH Confidence 68999999999999999876 799999999999999999999 79996 568999999999999999999999999999 Q ss_pred HHHHHHHHhhcccccCCC Q lcl|NC_021539. 82 IQSLQFDVAVNVNAESQS 99 (99) Q Consensus 82 i~~l~l~~~~~e~~~~~s 99 (99) |++|||++++. ...+++ T Consensus 77 i~~l~l~~~e~-~~d~~~ 93 (94) T protein:vir:10 77 IIDFSLSLMEV-SEDEES 93 (94) T ss_pred HHHhhhhhccc-CCCcCC Confidence 99999999853 333344 No 9 >protein:vir:9706 Length: 100 # NCBI annotation: hypothetical protein # Family: family:all:316 # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795468;genbank:gi:28876223;genbank:GeneID:1257767 Probab=97.74 E-value=5.5e-07 Score=54.89 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=65.2 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhc--CCc-cCCCCcchHHHHHHHHHHHHHhhhHHHHHHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLA--GVP-FTFEKEDAAKQLLFDGVRYAYNNSFEYFQEN 77 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~--G~~-~d~~~~~~~keLv~er~RY~yndale~F~~N 77 (99) |.+|.++|+++|.+|||. |+.+|.=|+.++..+..+|++-+ |.. -+|+.+..++--|+--+-+-|.+=. -.-+. T Consensus 1 m~~t~e~L~~lK~~lRID--~d~DD~li~~~i~~Ae~~I~~AV~~~~t~~~~~~~~rF~~Av~~Lv~~~Y~nR~-~t~d~ 77 (100) T protein:vir:97 1 MAVSKELLNSVKLYCKID--FDFENDIIKEMIESAQEQICFAIDDGSTPEMFEGHAKFALAVKKQVKEEYDHRG-LSADS 77 (100) T ss_pred CcccHHHHHHHHHHcCCC--CCcchHHHHHHHHHHHHHHhhhccCCCCcchhhccchHHHHHHHHHHHHHHhcc-ccchh Confidence 999999999999999997 77789999999999999999988 432 3356677777777776665555432 12334 Q ss_pred HHHHH----HHHHHHHhhccccc Q lcl|NC_021539. 78 FISEI----QSLQFDVAVNVNAE 96 (99) Q Consensus 78 f~~ei----~~l~l~~~~~e~~~ 96 (99) ++.+| +++..+...++++. T Consensus 78 ~~~~ip~gv~~lI~QLR~~~~~~ 100 (100) T protein:vir:97 78 FRYPLANGVLNIIHQLRLRGDDS 100 (100) T ss_pred hcchhhhhHHHHHHHHHHhhcCC Confidence 44333 33554444443333 No 10 >protein:vir:79990 Length: 110 # NCBI annotation: hypothetical protein # Family: family:all:734 # ACLAME annotation(s): phi:0000018 - phage genome packaging # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430004;genbank:gi:156604059;genbank:GeneID:5525450 Probab=97.03 E-value=1.1e-05 Score=47.67 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=57.9 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccC-----CCCcchHHHHHHHHH--HHHHhhhHH- Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFT-----FEKEDAAKQLLFDGV--RYAYNNSFE- 72 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d-----~~~~~~~keLv~er~--RY~yndale- 72 (99) |.||.+-|+++|.++||. ++.+|.-|+..|.++..+|++.+|.... +..+..++--|+--+ .|..-.|.- T Consensus 1 m~vt~~dL~~iK~~lRID--~d~DD~lI~~~i~aA~~yI~~aig~~~~~~~~~~~~~~~~~~Avl~Lv~~~YeNR~a~~~ 78 (110) T protein:vir:79 1 MQLTAEELKLLKKHCKID--HNSEDDLLEIYYSWAFHEIASAVTDEPSKYIDWFKSHPLFARAIYPLASYYFENRIAYLD 78 (110) T ss_pred CeecHHHHHHHHHHhCCC--CCchhHHHHHHHHHHHHHHhhhccCcccccccCCCCchHHHHHHHHHHHHHHHhhhhccc Confidence 999999999999999996 7778999999999999999999985321 223434444444333 333333321 Q ss_pred --HHHHHH--HHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 73 --YFQENF--ISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 73 --~F~~Nf--~~ei~~l~l~~~~~e~~~~~s 99 (99) ..+-.| .+-|+.+.-........+.+. T Consensus 79 ~~~~~vp~~v~slI~qlR~~y~~~~~~e~~~ 109 (110) T protein:vir:79 79 RDLSLAPHMVLSTVHKLRGSFERFLESENDE 109 (110) T ss_pred cccccccHHHHHHHHHHHhhhhhhccccccc Confidence 122222 333333333333322222222 No 11 >protein:vir:98340 Length: 110 # NCBI annotation: DNA packaging protein # Family: family:all:734 # ACLAME annotation(s): phi:0000018 - phage genome packaging # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918932;genbank:gi:119443694;genbank:GeneID:4594502 Probab=97.03 E-value=1.1e-05 Score=47.67 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=57.9 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccC-----CCCcchHHHHHHHHH--HHHHhhhHH- Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFT-----FEKEDAAKQLLFDGV--RYAYNNSFE- 72 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d-----~~~~~~~keLv~er~--RY~yndale- 72 (99) |.||.+-|+++|.++||. ++.+|.-|+..|.++..+|++.+|.... +..+..++--|+--+ .|..-.|.- T Consensus 1 m~vt~~dL~~iK~~lRID--~d~DD~lI~~~i~aA~~yI~~aig~~~~~~~~~~~~~~~~~~Avl~Lv~~~YeNR~a~~~ 78 (110) T protein:vir:98 1 MQLTAEELKLLKKHCKID--HNSEDDLLEIYYSWAFHEIASAVTDEPSKYIDWFKSHPLFARAIYPLASYYFENRIAYLD 78 (110) T ss_pred CeecHHHHHHHHHHhCCC--CCchhHHHHHHHHHHHHHHhhhccCcccccccCCCCchHHHHHHHHHHHHHHHhhhhccc Confidence 999999999999999996 7778999999999999999999985321 223434444444333 333333321 Q ss_pred --HHHHHH--HHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 73 --YFQENF--ISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 73 --~F~~Nf--~~ei~~l~l~~~~~e~~~~~s 99 (99) ..+-.| .+-|+.+.-........+.+. T Consensus 79 ~~~~~vp~~v~slI~qlR~~y~~~~~~e~~~ 109 (110) T protein:vir:98 79 RDLSLAPHMVLSTVHKLRGSFERFLESENDE 109 (110) T ss_pred cccccccHHHHHHHHHHHhhhhhhccccccc Confidence 122222 333333333333322222222 No 12 >protein:vir:4602 Length: 110 # NCBI annotation: hypothetical protein # Family: family:all:734 # ACLAME annotation(s): phi:0000018 - phage genome packaging # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058447;genbank:gi:9635173;genbank:GeneID:1262723 Probab=96.84 E-value=3.2e-05 Score=45.26 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=62.5 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccC-----CCCcchHHHHHHHHHHHHHh--hh--- Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFT-----FEKEDAAKQLLFDGVRYAYN--NS--- 70 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d-----~~~~~~~keLv~er~RY~yn--da--- 70 (99) |.+|.+-|+++|.++||. ++.+|.-|+..|.++..+|++-+|.... +..+..++--|+--+-+-|. .+ T Consensus 1 M~~t~~dL~~iK~~lRID--~d~DD~li~~yi~AA~~yI~~aig~~~~~~~~~~~~~~~~~~Avl~Lv~~~YeNR~a~~~ 78 (110) T protein:vir:46 1 MQLTAEELKLLKKHCKID--HNSEDDLLEIYYSWAFHEIASAVTDEPSKYIDWFKSHPLFARATYPLASYYFENRIAYLD 78 (110) T ss_pred CcccHHHHHHHHHHhCCC--CCchHHHHHHHHHHHHHHHHhhccCCcccccCccCcchHHHHHHHHHHHHHHHhcccccc Confidence 999999999999999996 6778889999999999999999984221 22344445544444433332 22 Q ss_pred --HHHHHHHHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 71 --FEYFQENFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 71 --le~F~~Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) +..-.--..+-|..|.-..+...+++++- T Consensus 79 ~~~~~vp~~v~slI~qLRg~y~~~~e~e~~~ 109 (110) T protein:vir:46 79 RDLSLAPHMVLSTVHKLRGSFEQFLESENDE 109 (110) T ss_pred cccccccHHHHHHHHHHHHhHhHhhcccccC Confidence 11222224556666665555544444444 No 13 >protein:vir:9412 Length: 110 # NCBI annotation: DNA packaging protein # Family: family:all:734 # ACLAME annotation(s): phi:0000018 - phage genome packaging # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803390;genbank:gi:29028702;genbank:GeneID:1258139 Probab=96.74 E-value=2.2e-05 Score=46.16 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=58.9 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCcc----C-CCCcchHHHHHHH--HHHHHHhhhHHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPF----T-FEKEDAAKQLLFD--GVRYAYNNSFEY 73 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~----d-~~~~~~~keLv~e--r~RY~yndale~ 73 (99) |.||.+-|+++|.+|||. ++.+|.-|+..|.++..+|++.+|... + +..+...+--|+- --.|..-.+.-. T Consensus 1 m~vt~~dLeeiK~~LRID--~d~DD~lI~~~i~AA~~~I~~ai~~~~~~~~~~~~~~~~~~~Avl~Lv~~~YeNR~a~~~ 78 (110) T protein:vir:94 1 MQLTAEELKLLKKHCKID--HNSEDDLLEIYYSWAFREIASAVTDKPSKYIDWFKSHPLFARAIYPLASYYFENRIAYLD 78 (110) T ss_pred CeecHHHHHHHHHHhCCC--CCchhHHHHHHHHHHHHHHhhhhcccccccccCCCCchHHHHHHHHHHHHHHHhhhhccc Confidence 999999999999999996 777899999999999999999998422 1 2223344443333 334444433221 Q ss_pred ---HHHH--HHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 74 ---FQEN--FISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 74 ---F~~N--f~~ei~~l~l~~~~~e~~~~~s 99 (99) .+-. +.+-|..+.-..+.....+.+. T Consensus 79 ~~~~~vp~~v~sli~qlR~~y~~~~~~e~~~ 109 (110) T protein:vir:94 79 RDLSLAPHMVLSTVHKLRGSFEQFLESENDE 109 (110) T ss_pred cccccccHHHHHHHHHHHhhhhhhccccccc Confidence 1222 3334444433333332333333 No 14 >protein:vir:4702 Length: 113 # NCBI annotation: hypothetical protein # Family: family:all:734 # ACLAME annotation(s): phi:0000018 - phage genome packaging # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061634;genbank:gi:9635721;genbank:GeneID:1263015 Probab=96.62 E-value=4.2e-05 Score=44.57 Aligned_cols=97 Identities=13% Similarity=0.143 Sum_probs=60.3 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCcc-C----CCCcchHHHHHHH--HHHHHHhhhHHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPF-T----FEKEDAAKQLLFD--GVRYAYNNSFEY 73 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~-d----~~~~~~~keLv~e--r~RY~yndale~ 73 (99) |.+|.+.|+++|.++||. ++.+|.-|...|.++..+|++.+|... + +..+...+--|+- --.|..-.|.-. T Consensus 1 M~vt~~dLeeiK~~LRID--~d~DD~li~~~i~AA~~~I~~ai~~~~~~~~~~~~~~~~~~~AvllLv~~~YeNR~a~~~ 78 (113) T protein:vir:47 1 MQLTAEELKLLKKHCKID--HNSEDDLLEIYYSWAFHEIASAVTDEPSKYIDWFKSHPLFARAIYPLASYYFENRIAYLD 78 (113) T ss_pred CcccHHHHHHHHHHhCCC--CCcchHHHHHHHHHHHHHHHhhccccccccccccCCchHHHHHHHHHHHHHHhhhhhccc Confidence 999999999999999996 777899999999999999999998321 1 2223334444444 334444444322 Q ss_pred H---HHH--HHHHHHHHHHHHh-hcccccCCC Q lcl|NC_021539. 74 F---QEN--FISEIQSLQFDVA-VNVNAESQS 99 (99) Q Consensus 74 F---~~N--f~~ei~~l~l~~~-~~e~~~~~s 99 (99) . +-. +.+-|..+.-... ..+...+++ T Consensus 79 ~~~~~vp~~v~sli~qlR~~y~~~~~~~~~~~ 110 (113) T protein:vir:47 79 RDLSLAPHMVLSTVHKLRGSFEQFLESENDEE 110 (113) T ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCC Confidence 2 122 4455555544332 223333333 No 15 >protein:vir:4954 Length: 104 # NCBI annotation: putative DNA packaging protein # Family: family:all:734 # ACLAME annotation(s): phi:0000018 - phage genome packaging # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049930;genbank:gi:9632901;genbank:GeneID:1262077 Probab=96.33 E-value=0.00012 Score=42.14 Aligned_cols=93 Identities=17% Similarity=0.119 Sum_probs=56.5 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCC----cchHHHHHHHHH--HHHHhh----- Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEK----EDAAKQLLFDGV--RYAYNN----- 69 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~----~~~~keLv~er~--RY~ynd----- 69 (99) |.++ |+++|.+|||. ++.+|.-|..+|.++..+|++.+|....|.. +...+-.++--+ .|..-. T Consensus 1 M~vt---LeeiK~~LRID--~dddD~li~~~i~aA~~yi~~aig~~~~~~~~~~~~~~~~~Avl~Lv~~~YeNR~~~~~~ 75 (104) T protein:vir:49 1 MSVS---KTSIMQTLNLD--ETDDTALIPAYIESAKQYIINAVGSDSKFYDLDSVRALFDTAVIALTSSYFTYRVALTDT 75 (104) T ss_pred Cccc---HHHHHHHcCCC--CccchHHHHHHHHHHHHHHHHhhCCCCccccccCCChHHHHHHHHHHHHHHhhchhcccc Confidence 9887 99999999996 6678999999999999999999995322211 123344444333 343322 Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccCC Q lcl|NC_021539. 70 SFEYFQENFISEIQSLQFDVAVNVNAESQ 98 (99) Q Consensus 70 ale~F~~Nf~~ei~~l~l~~~~~e~~~~~ 98 (99) +...-.--..+-|..|.-.........++ T Consensus 76 ~~~~vp~~v~sli~qLr~~y~~~~e~~~~ 104 (104) T protein:vir:49 76 ATYPVNLTLNSIIGQLRGLYATYSEERGD 104 (104) T ss_pred ccchhhHHHHHHHHHHHHhhhhhhhccCC Confidence 22222222445555554444444444444 No 16 >protein:vir:105005 Length: 96 # NCBI annotation: putative DNA packaging protein phage # Family: family:all:316 # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459970;genbank:gi:85701385;genbank:GeneID:3882146 Probab=96.30 E-value=0.0001 Score=42.51 Aligned_cols=92 Identities=22% Similarity=0.292 Sum_probs=56.6 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhh--hHHHHHH-H Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNN--SFEYFQE-N 77 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~ynd--ale~F~~-N 77 (99) |-+| |+++|.++||. ++ +|.-|..+|.++..+|.+.+|.+++- .+..+|-.++--+=+-|.+ +...-.. - T Consensus 1 M~vt---Lee~K~~LRID--~D-dD~lI~~~i~aA~~~i~~~~g~~~~e-~~~~~k~Avl~lv~~~YenR~~~~~~~~~~ 73 (96) T protein:vir:10 1 MLVT---LEEAKEWIRVD--GD-DDPTITMLIKAAELYIYKATGKTFTQ-TNEDAKLLCLFLVADWYGNRLLVGEKASEK 73 (96) T ss_pred CcCC---HHHHHHHcCCC--Cc-hhHHHHHHHHHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHHHHhhhhhccccccch Confidence 8887 99999999996 43 78899999999999999999977763 3445666555555444433 2211110 1 Q ss_pred HHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 78 FISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 78 f~~ei~~l~l~~~~~e~~~~~s 99 (99) ..--+.++-.+.....+...|+ T Consensus 74 ip~~v~sli~qLr~~~~~~~e~ 95 (96) T protein:vir:10 74 IRTIVQSMILQLQYASEPQEER 95 (96) T ss_pred hhHHHHHHHHHHhhcCCccccc Confidence 1222333333333333444444 No 17 >protein:vir:102863 Length: 96 # NCBI annotation: conserved phage protein # Family: family:all:316 # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338138;genbank:gi:77020236;genbank:GeneID:3703772 Probab=96.30 E-value=0.0001 Score=42.51 Aligned_cols=92 Identities=22% Similarity=0.292 Sum_probs=56.6 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhh--hHHHHHH-H Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNN--SFEYFQE-N 77 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~ynd--ale~F~~-N 77 (99) |-+| |+++|.++||. ++ +|.-|..+|.++..+|.+.+|.+++- .+..+|-.++--+=+-|.+ +...-.. - T Consensus 1 M~vt---Lee~K~~LRID--~D-dD~lI~~~i~aA~~~i~~~~g~~~~e-~~~~~k~Avl~lv~~~YenR~~~~~~~~~~ 73 (96) T protein:vir:10 1 MLVT---LEEAKEWIRVD--GD-DDPTITMLIKAAELYIYKATGKTFTQ-TNEDAKLLCLFLVADWYGNRLLVGEKASEK 73 (96) T ss_pred CcCC---HHHHHHHcCCC--Cc-hhHHHHHHHHHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHHHHhhhhhccccccch Confidence 8887 99999999996 43 78899999999999999999977763 3445666555555444433 2211110 1 Q ss_pred HHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 78 FISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 78 f~~ei~~l~l~~~~~e~~~~~s 99 (99) ..--+.++-.+.....+...|+ T Consensus 74 ip~~v~sli~qLr~~~~~~~e~ 95 (96) T protein:vir:10 74 IRTIVQSMILQLQYASEPQEER 95 (96) T ss_pred hhHHHHHHHHHHhhcCCccccc Confidence 1222333333333333444444 No 18 >protein:vir:102083 Length: 96 # NCBI annotation: DNA packaging protein # Family: family:all:316 # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512316;genbank:gi:89152485;genbank:GeneID:3953076 Probab=96.30 E-value=0.0001 Score=42.51 Aligned_cols=92 Identities=22% Similarity=0.292 Sum_probs=56.6 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhh--hHHHHHH-H Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNN--SFEYFQE-N 77 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~ynd--ale~F~~-N 77 (99) |-+| |+++|.++||. ++ +|.-|..+|.++..+|.+.+|.+++- .+..+|-.++--+=+-|.+ +...-.. - T Consensus 1 M~vt---Lee~K~~LRID--~D-dD~lI~~~i~aA~~~i~~~~g~~~~e-~~~~~k~Avl~lv~~~YenR~~~~~~~~~~ 73 (96) T protein:vir:10 1 MLVT---LEEAKEWIRVD--GD-DDPTITMLIKAAELYIYKATGKTFTQ-TNEDAKLLCLFLVADWYGNRLLVGEKASEK 73 (96) T ss_pred CcCC---HHHHHHHcCCC--Cc-hhHHHHHHHHHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHHHHhhhhhccccccch Confidence 8887 99999999996 43 78899999999999999999977763 3445666555555444433 2211110 1 Q ss_pred HHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 78 FISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 78 f~~ei~~l~l~~~~~e~~~~~s 99 (99) ..--+.++-.+.....+...|+ T Consensus 74 ip~~v~sli~qLr~~~~~~~e~ 95 (96) T protein:vir:10 74 IRTIVQSMILQLQYASEPQEER 95 (96) T ss_pred hhHHHHHHHHHHhhcCCccccc Confidence 1222333333333333444444 No 19 >protein:vir:107614 Length: 96 # NCBI annotation: conserved phage protein # Family: family:all:316 # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338189;genbank:gi:77020184;genbank:GeneID:3703745 Probab=96.30 E-value=0.0001 Score=42.51 Aligned_cols=92 Identities=22% Similarity=0.292 Sum_probs=56.6 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhh--hHHHHHH-H Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNN--SFEYFQE-N 77 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~ynd--ale~F~~-N 77 (99) |-+| |+++|.++||. ++ +|.-|..+|.++..+|.+.+|.+++- .+..+|-.++--+=+-|.+ +...-.. - T Consensus 1 M~vt---Lee~K~~LRID--~D-dD~lI~~~i~aA~~~i~~~~g~~~~e-~~~~~k~Avl~lv~~~YenR~~~~~~~~~~ 73 (96) T protein:vir:10 1 MLVT---LEEAKEWIRVD--GD-DDPTITMLIKAAELYIYKATGKTFTQ-TNEDAKLLCLFLVADWYGNRLLVGEKASEK 73 (96) T ss_pred CcCC---HHHHHHHcCCC--Cc-hhHHHHHHHHHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHHHHhhhhhccccccch Confidence 8887 99999999996 43 78899999999999999999977763 3445666555555444433 2211110 1 Q ss_pred HHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 78 FISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 78 f~~ei~~l~l~~~~~e~~~~~s 99 (99) ..--+.++-.+.....+...|+ T Consensus 74 ip~~v~sli~qLr~~~~~~~e~ 95 (96) T protein:vir:10 74 IRTIVQSMILQLQYASEPQEER 95 (96) T ss_pred hhHHHHHHHHHHhhcCCccccc Confidence 1222333333333333444444 No 20 >protein:vir:4857 Length: 104 # NCBI annotation: putative DNA packaging protein # Family: family:all:734 # ACLAME annotation(s): phi:0000018 - phage genome packaging # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049397;genbank:gi:9632425;genbank:GeneID:1258493 Probab=96.30 E-value=0.00012 Score=42.06 Aligned_cols=93 Identities=15% Similarity=0.075 Sum_probs=57.1 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCC----cchHHHHHHHHHHHHHhh--h---- Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEK----EDAAKQLLFDGVRYAYNN--S---- 70 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~----~~~~keLv~er~RY~ynd--a---- 70 (99) |-|+ |+++|.++||. |+.+|.-|...|.++..+|++-+|..-.|.. ....+-.++--+=+-|.+ + T Consensus 1 M~vt---LeevK~~LRID--~d~dD~li~~~i~aA~~~i~~~ig~~~~~~~~~~~~~~~~~Avl~lv~~~Y~NR~~~~~~ 75 (104) T protein:vir:48 1 MSVS---KETIMQTLNLD--ETDDTALIPAYIESARQYVVNSVGDDPKFYNLDSVRALFDTAVIALTSSYFTYRVALTDT 75 (104) T ss_pred Cccc---HHHHHHHcCCC--CccchHHHHHHHHHHHHHHHHhhCCCCCcccccCCChhHHHHHHHHHHHHHhhhhhhccc Confidence 8887 99999999996 7778999999999999999999984322211 123444455444444432 1 Q ss_pred -HHHHHHHHHHHHHHHHHHHhhcccccCC Q lcl|NC_021539. 71 -FEYFQENFISEIQSLQFDVAVNVNAESQ 98 (99) Q Consensus 71 -le~F~~Nf~~ei~~l~l~~~~~e~~~~~ 98 (99) ...-.--..+-|..|.-........+++ T Consensus 76 ~~~~ip~~v~sli~~lR~~y~~~~~~~~~ 104 (104) T protein:vir:48 76 ATYPVNLTLNSIIGQLRGLYATYSEERGD 104 (104) T ss_pred ccchhhHHHHHHHHHHHHhhhhhcccCCC Confidence 1122222344454444444444444444 No 21 >protein:vir:4998 Length: 106 # NCBI annotation: putative DNA packaging protein # Family: family:all:734 # ACLAME annotation(s): phi:0000018 - phage genome packaging # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049972;genbank:gi:9632944;genbank:GeneID:1262107 Probab=95.88 E-value=0.0002 Score=40.86 Aligned_cols=94 Identities=17% Similarity=0.113 Sum_probs=56.6 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcc----hHHHHHHHHH--HHHHh-----h Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKED----AAKQLLFDGV--RYAYN-----N 69 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~----~~keLv~er~--RY~yn-----d 69 (99) |.|+ |+++|.++||. ++.+|.-|+..|.++..+|++-+|..-.|.... ..+-.|+--+ .|..- . T Consensus 1 M~v~---Le~iK~~LRID--~ddDD~li~~~i~AA~~yi~~aig~~~~~~~~~~~~~~~~~Avl~Lv~~~YeNR~~~~~~ 75 (106) T protein:vir:49 1 MSVS---KEIIMQTLNLD--ETDDTALIPAYIESAQQYIINAVGSDPKFYELENVKYLFDTAVIALTSTYFTYRVALNET 75 (106) T ss_pred Cccc---HHHHHHHcCCC--CccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCCCchHHHHHHHHHHHHHHhhcccccCc Confidence 8886 99999999996 667899999999999999999999543343222 1233344333 34332 2 Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 70 SFEYFQENFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 70 ale~F~~Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) +...-.-=..+-|..|.-..+...+..++- T Consensus 76 ~~~~vp~~v~slI~qLR~~y~~~~e~~~~~ 105 (106) T protein:vir:49 76 LTYPINLTLNSIIGQLRGLYATYSDGGVNN 105 (106) T ss_pred ccccccHHHHHHHHHHHhhhhhhhhccccC Confidence 232222334555555554444432222222 No 22 >protein:vir:4831 Length: 105 # NCBI annotation: ORF27 # Family: family:all:734 # ACLAME annotation(s): phi:0000018 - phage genome packaging # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038328;genbank:gi:9634654;genbank:GeneID:1262588 Probab=95.46 E-value=0.00045 Score=38.91 Aligned_cols=92 Identities=16% Similarity=0.090 Sum_probs=52.3 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCC-CC---cchHHHHHHHHHHHHHhh------- Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTF-EK---EDAAKQLLFDGVRYAYNN------- 69 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~-~~---~~~~keLv~er~RY~ynd------- 69 (99) |.|+ |+++|.+|||. |+.+|.-|..+|.++..+|++.+|....| +. +...+-.++--+=+-|.+ T Consensus 1 M~vt---Lee~K~~LRID--~dddD~lI~~~i~aA~~yi~~~ig~~~~~~~~~~~~~~~~~Avl~lv~~~YeNR~~~~~~ 75 (105) T protein:vir:48 1 MSVS---KTSIMQTLNLD--ETDDTALIPAYIESAKQYIINAVGSDSKFYDLENVQPLFDTAVIALTSSYFTYRVALTDT 75 (105) T ss_pred Cccc---HHHHHHHcCCC--CccchHHHHHHHHHHHHHHHHhhCCCCccccccCCchHHHHHHHHHHHHHHhhhhhccCc Confidence 8887 99999999996 77789999999999999999999943222 11 223444444444333322 Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 70 SFEYFQENFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 70 ale~F~~Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) +...-.--..+-|..+.-.. ...++.+. T Consensus 76 ~~~~ip~~v~sli~~lR~~y--~~~~e~~~ 103 (105) T protein:vir:48 76 VTYPINLTLNSIIGQLRGLY--ATYSEVVA 103 (105) T ss_pred ccchhhHHHHHHHHHHhhhh--hhhhhccc Confidence 21122222333333333222 21222222 No 23 >protein:vir:102158 Length: 99 # NCBI annotation: uncharacterized phage protein (possible DNA packaging) # Family: family:all:316 # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699940;genbank:gi:110804046;genbank:GeneID:4206702 Probab=94.80 E-value=0.00079 Score=37.59 Aligned_cols=91 Identities=22% Similarity=0.287 Sum_probs=52.3 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhh--hHHH--HHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNN--SFEY--FQE 76 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~ynd--ale~--F~~ 76 (99) |-+| |+++|.+|||. ++.+|.-|...|.++..+|.+-+|.+++-. +...|--++--+=+-|.+ +... +.. T Consensus 1 M~vt---Lee~K~~LRID--~d~dD~lI~~~i~aA~~~i~~~~~~~~~~~-~~~~k~Avl~lv~~~YenR~~~~~~~~~~ 74 (99) T protein:vir:10 1 MILS---VDEVKNYLRVD--YDEDDILIQDLIESAEDYLYNATGKKFTEK-NKLAKRYCLALVYDWYKDKGMNIRATKNT 74 (99) T ss_pred CcCC---HHHHHHHcCCC--CCcchHHHHHHHHHHHHHHHHhhCCCCCCC-ChHHHHHHHHHHHHhHhcchhhhhhhhcc Confidence 7776 89999999997 777999999999999999999999766532 334454444443333322 1110 000 Q ss_pred H----HHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 77 N----FISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 77 N----f~~ei~~l~l~~~~~e~~~~~s 99 (99) . ----+.++..+. ......+| T Consensus 75 ~~~~~lp~~v~sli~ql--r~~~~~~~ 99 (99) T protein:vir:10 75 TVSEKVKYTLQSILLQL--KFCKEEDT 99 (99) T ss_pred chhhhhhHHHHHHHHHH--hhccCCCC Confidence 0 011122222222 22223333 No 24 >protein:vir:81159 Length: 95 # NCBI annotation: putative DNA packaging protein # Family: family:all:316 # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285813;genbank:gi:148747734;genbank:GeneID:5247202 Probab=94.70 E-value=0.00046 Score=38.89 Aligned_cols=89 Identities=20% Similarity=0.276 Sum_probs=50.3 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHH--hhhHHH--HHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAY--NNSFEY--FQE 76 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~y--ndale~--F~~ 76 (99) |-+| |+++|.++||. ++.+|.-|..+|+++..+|++-+|.+++-. +...|--++--+=+-| -++... -.- T Consensus 2 m~vt---Lee~K~~LRID--~d~dD~lI~~li~aA~~~i~~~~g~~~~~~-~~~~~~Avl~lv~~~YeNRe~~~~~~~~~ 75 (95) T protein:vir:81 2 MIVT---LEEVKNWLRVD--FSDDDALITTLINAAEEYLKNATGTTFDAT-NHLAKIFCMTLIADWYENRELVGRASDQV 75 (95) T ss_pred CcCC---HHHHHHHcCCC--CCcchHHHHHHHHHHHHHHHHhhccccccC-chHHHHHHHHHHHHHHhhccccccccccc Confidence 5554 89999999996 677899999999999999999999766533 3344444444443333 222110 011 Q ss_pred HHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 77 NFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 77 Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) +|. +.++-.+. ...-..|| T Consensus 76 p~~--v~sll~~l--r~~~~~~~ 94 (95) T protein:vir:81 76 RPI--LQSILAQL--TYAYGGET 94 (95) T ss_pred cHH--HHHHHHHh--hhcccccc Confidence 111 11111111 11222233 No 25 >protein:vir:1271 Length: 115 # NCBI annotation: hypothetical protein # Family: family:all:316 # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690763;genbank:gi:22855003;genbank:GeneID:955211 Probab=94.26 E-value=0.00099 Score=37.06 Aligned_cols=90 Identities=20% Similarity=0.193 Sum_probs=54.3 Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHh--hhHH----HHHHHHH Q lcl|NC_021539. 6 EILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYN--NSFE----YFQENFI 79 (99) Q Consensus 6 ~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yn--dale----~F~~Nf~ 79 (99) ==|+++|.+|||. ++.+|.-|..+|.++..+|.+.+|.. +..+...+-.++--+=|-|. ++.. ...-.|. T Consensus 1 ltLeevK~~LRID--~ddDD~lI~~li~AA~~yi~~~~g~~--~e~~~~~~~Avl~Lv~~~YeNRe~~~~~~~~~~lp~~ 76 (115) T protein:vir:12 1 MDLEAIKNYLKVE--HEEDDRQLLNQMAAAKSYIINGIGRY--IEGHPQFELVLQMLVQHWYENKGIYETGGTGLSIPFT 76 (115) T ss_pred CCHHHHHHHcCCC--CccchHHHHHHHHHHHHHHHHHhCCC--CCCchhHHHHHHHHHHHHHhcccccccccchhhhhHH Confidence 1289999999996 67789999999999999999999953 45566677766666655554 3321 1222332 Q ss_pred HHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 80 SEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 80 ~ei~~l~l~~~~~e~~~~~s 99 (99) -.-+=.+++....+..+++- T Consensus 77 v~sll~~lR~~~~~~~e~~~ 96 (115) T protein:vir:12 77 AENILTQLRYVSVEEQENEK 96 (115) T ss_pred HHHHHHHhhcccCCcccccc Confidence 22222233322222211111 No 26 >protein:vir:100211 Length: 114 # NCBI annotation: Hypothetical protein # Family: family:all:6491 # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025032;genbank:gi:48697265;genbank:GeneID:2948309 Probab=93.96 E-value=0.0018 Score=35.67 Aligned_cols=96 Identities=10% Similarity=0.195 Sum_probs=51.7 Q ss_pred CCCCHH-HHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccC---CCCcchHHHHHHHHH--HHHHhhhH--- Q lcl|NC_021539. 1 MQVSDE-ILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFT---FEKEDAAKQLLFDGV--RYAYNNSF--- 71 (99) Q Consensus 1 m~i~~~-lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d---~~~~~~~keLv~er~--RY~yndal--- 71 (99) --.|.+ -|+++|.+|||. ++.+|.-|...|.++..+|++.+|..++ +..+..++--|+--+ .|..-.+. T Consensus 5 ~~~~~~vtLeevK~~LRID--~ddDD~lI~~lI~aA~~yI~~aig~~~~~~~~~~~~~~~~Avl~Lv~~~YeNR~~~~~~ 82 (114) T protein:vir:10 5 TADTVGVTADDMQSYLNLD--SDGDASILEGLISTAESAVMNAIDDTIAVEVYRTYPLFNQAVRVLVDFMYYSRGTLSDQ 82 (114) T ss_pred ccccccccHHHHHHHhCCC--CccchHHHHHHHHHHHHHHHHhhCCCCCcccccCchhHHHHHHHHHHHHHhhhhhhccc Confidence 112222 399999999996 6778999999999999999999995443 233444444333333 33332222 Q ss_pred -HHHHHHHHHHHHHHHHHH----hhcccccCC Q lcl|NC_021539. 72 -EYFQENFISEIQSLQFDV----AVNVNAESQ 98 (99) Q Consensus 72 -e~F~~Nf~~ei~~l~l~~----~~~e~~~~~ 98 (99) ....--+.+-|+.|.-.. +-+.++-+- T Consensus 83 ~~~vp~~v~slI~qLR~~~~~d~~~~~~~~d~ 114 (114) T protein:vir:10 83 SKAYPPSYAYMINSIRWKIQRDQAAKAGGNDG 114 (114) T ss_pred cccccHHHHHHHHHHHHHhhhhhhhhccCCCC Confidence 122222344444333221 111111111 No 27 >protein:vir:95774 Length: 115 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950592;genbank:gi:119953787;genbank:GeneID:5076844 Probab=92.21 E-value=0.0025 Score=34.81 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=48.5 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHH--HHHHhhh---H---- Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGV--RYAYNNS---F---- 71 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~--RY~ynda---l---- 71 (99) |..+ +|+.+|-++-|.|++...|+-|..+|+.+..+|+..+|.+ .+ +....-.|.+=| ||-+-++ - T Consensus 1 md~~--~L~~vK~~LgI~~~D~~~D~lL~~ii~~a~~~i~~~l~~~-~i--P~~L~~Iv~ev~vkryNR~g~EG~~S~S~ 75 (115) T protein:vir:95 1 MDTT--QLEKIKRRLGIPADDDKEDKLLEDLVEDAETYFKLLTSSA-VV--DSKYHFMIEAVVYKLYGRKGSEGVTSETV 75 (115) T ss_pred Cchh--HHHHHHHHhCCCCCCchhhHHHHHHHHHHHHHHHHhcCch-hc--chhHHHHHHHHHHHHhcCCCccccceeec Confidence 6555 8999999999999998899999999999999999999953 22 222222222222 3322111 0 Q ss_pred ----HHHHHH--HHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 72 ----EYFQEN--FISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 72 ----e~F~~N--f~~ei~~l~l~~~~~e~~~~~s 99 (99) =-|+.| ...+- .-.|+...+.+...-+ T Consensus 76 eG~S~tf~~nD~~f~eY-~~~l~~~~~~~~~~~~ 108 (115) T protein:vir:95 76 DGYSVTYQEWDNLFKPY-MAILNKDFGLDGSVRE 108 (115) T ss_pred Cceeeeccccccccchh-HHHHHHHHhccCCccC Confidence 001111 01110 0111111111111111 No 28 >protein:vir:1887 Length: 108 # NCBI annotation: gp6 # Family: family:all:6764 # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037667;genbank:gi:9634125;genbank:GeneID:1262472 Probab=91.02 E-value=0.0041 Score=33.65 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=52.5 Q ss_pred CCCCHHH-HHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccC---CCCcchHHH--HHHHHHHHHHhhhHHH- Q lcl|NC_021539. 1 MQVSDEI-LQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFT---FEKEDAAKQ--LLFDGVRYAYNNSFEY- 73 (99) Q Consensus 1 m~i~~~l-L~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d---~~~~~~~ke--Lv~er~RY~yndale~- 73 (99) |-+|+=+ |+++|.+|||. |+.+|.-|...|.++..++.+.+|.++. ...+...|. |++---.|+.-.+.-. T Consensus 3 ~~~M~~vtLee~K~hLRid--~dddD~lI~~~i~AA~~~v~~~~~~~~~~~~~~~p~~ik~AiLllv~~~YenRE~~~~~ 80 (108) T protein:vir:18 3 IDVLDVISLSLFKQQIEFE--EDDRDELITLYAQAAFDYCMRWCDEPAWKVAADIPAAVKGAVLLVFADMFEHRTAQSEV 80 (108) T ss_pred CCcccccCHHHHHHHcCCC--CCcchHHHHHHHHHHHHHHHHHhCCcccccccccchHHHHHHHHHHHHHHhcccccccc Confidence 4444444 99999999997 7789999999999999999999995541 111223343 3344445554443321 Q ss_pred -HHHH-HHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 74 -FQEN-FISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 74 -F~~N-f~~ei~~l~l~~~~~e~~~~~s 99 (99) +..+ ....|+.-.=....+-.++.-| T Consensus 81 ~~~~~~~~~~LL~pYR~~~g~~~~~~~~ 108 (108) T protein:vir:18 81 QLYENAAAERMMFIHRNWRGKAESEEGS 108 (108) T ss_pred hhhhhHHHHHHHHHHHhcCCCCCcccCC Confidence 1111 1222222211111121222222 No 29 >protein:vir:192 Length: 108 # NCBI annotation: Gp6 # Family: family:all:6764 # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037702;genbank:gi:9634167;genbank:GeneID:1262532 Probab=91.02 E-value=0.0041 Score=33.65 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=52.5 Q ss_pred CCCCHHH-HHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccC---CCCcchHHH--HHHHHHHHHHhhhHHH- Q lcl|NC_021539. 1 MQVSDEI-LQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFT---FEKEDAAKQ--LLFDGVRYAYNNSFEY- 73 (99) Q Consensus 1 m~i~~~l-L~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d---~~~~~~~ke--Lv~er~RY~yndale~- 73 (99) |-+|+=+ |+++|.+|||. |+.+|.-|...|.++..++.+.+|.++. ...+...|. |++---.|+.-.+.-. T Consensus 3 ~~~M~~vtLee~K~hLRid--~dddD~lI~~~i~AA~~~v~~~~~~~~~~~~~~~p~~ik~AiLllv~~~YenRE~~~~~ 80 (108) T protein:vir:19 3 IDVLDVISLSLFKQQIEFE--EDDRDELITLYAQAAFDYCMRWCDEPAWKVAADIPAAVKGAVLLVFADMFEHRTAQSEV 80 (108) T ss_pred CCcccccCHHHHHHHcCCC--CCcchHHHHHHHHHHHHHHHHHhCCcccccccccchHHHHHHHHHHHHHHhcccccccc Confidence 4444444 99999999997 7789999999999999999999995541 111223343 3344445554443321 Q ss_pred -HHHH-HHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 74 -FQEN-FISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 74 -F~~N-f~~ei~~l~l~~~~~e~~~~~s 99 (99) +..+ ....|+.-.=....+-.++.-| T Consensus 81 ~~~~~~~~~~LL~pYR~~~g~~~~~~~~ 108 (108) T protein:vir:19 81 QLYENAAAERMMFIHRNWRGKAESEEGS 108 (108) T ss_pred hhhhhHHHHHHHHHHHhcCCCCCcccCC Confidence 1111 1222222211111121222222 No 30 >protein:vir:95374 Length: 93 # NCBI annotation: hypothetical protein # Family: family:all:3227 # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764478;genbank:gi:115334632;genbank:GeneID:5179261 Probab=90.56 E-value=0.0056 Score=32.93 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=75.9 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHHH--HHHHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFEY--FQENF 78 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale~--F~~Nf 78 (99) |-=++.+|+-+|.++-|+ +.--|..|+.+|++...-|...-|+.+|++.. .-.-+|.+++-+-|.+-=+. -..|- T Consensus 1 ~md~~~il~LlK~~LGIs--t~~RD~yL~~iI~~v~~ELed~kGi~L~~~~~-~h~mf~vDyAawRY~~r~~~~~mPrhL 77 (93) T protein:vir:95 1 MMDIATIVSLVKERLGIR--TTVRDTYITAIVDGVIKELEDEKGLVLDGANP-YHLMFVVDYATWRYQSRDSDGAMPRHL 77 (93) T ss_pred CccHHHHHHHHHHHhccc--chhhhHHHHHHHHHHHHHHHhcCCceecCCCh-hHhhHHHhHhHhhhccCCCcccchHHH Confidence 656789999999999998 66789999999999999999999998998754 44788999998888877664 78888 Q ss_pred HHHHHHHHHHHhhcccc Q lcl|NC_021539. 79 ISEIQSLQFDVAVNVNA 95 (99) Q Consensus 79 ~~ei~~l~l~~~~~e~~ 95 (99) +--|-.+.++... +++ T Consensus 78 qyRL~Nliikar~-~~a 93 (93) T protein:vir:95 78 QYRLHNLMLHAGG-GTA 93 (93) T ss_pred HHHHHHhhhhccc-ccC Confidence 8888888887544 344 No 31 >protein:vir:100103 Length: 120 # NCBI annotation: gp7 # Family: family:all:363 # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945037;genbank:gi:38707897;genbank:GeneID:2744150 Probab=89.08 E-value=0.0038 Score=33.83 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=48.3 Q ss_pred CC-CCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCC-------------------cchHHH--H Q lcl|NC_021539. 1 MQ-VSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEK-------------------EDAAKQ--L 58 (99) Q Consensus 1 m~-i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~-------------------~~~~ke--L 58 (99) |. || |+++|..|||. |+.+|.-|...|.++..++.+.+|..+--+. +...|. | T Consensus 5 m~~vt---L~e~K~hLRvd--~d~DD~lI~~~i~AA~~~v~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AvL 79 (120) T protein:vir:10 5 TPIVS---LEVALAHLRED--AGVADDLIKIYIGAATQSASDYVDRKLYANDAEMQAAVADATAGADPIVANDAIRAAIL 79 (120) T ss_pred CCccC---HHHHHHHcCCC--CCcchHHHHHHHHHHHHHHHHHhCCcccccccccchhhhccccccccccCCHHHHHHHH Confidence 55 34 89999999996 7888999999999999999999985432110 111222 2 Q ss_pred HHHHHHHHHhhhHHH------HH--HHHHHHHHHHHHHHhh Q lcl|NC_021539. 59 LFDGVRYAYNNSFEY------FQ--ENFISEIQSLQFDVAV 91 (99) Q Consensus 59 v~er~RY~yndale~------F~--~Nf~~ei~~l~l~~~~ 91 (99) ++=--.|..-.+... .+ --+..-|..+...-+| T Consensus 80 llvg~~YenRe~~~~~~~~~~~~lP~~v~~Ll~~yR~~~gv 120 (120) T protein:vir:10 80 LTIGKLYAFREDVVSGASASVTELPSGAKSLLFPYRVGLGV 120 (120) T ss_pred HHHHHHHhchhhhhhcccccccccCHHHHHHHHHhhhccCC Confidence 223333443222110 00 1123333333333333 No 32 >protein:vir:1384 Length: 92 # NCBI annotation: Gp7 protein # Family: family:all:316 # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612836;genbank:gi:20065970;genbank:GeneID:935785 Probab=88.71 E-value=0.011 Score=31.41 Aligned_cols=84 Identities=17% Similarity=0.117 Sum_probs=49.3 Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHh--hhHH----HH--HHH Q lcl|NC_021539. 6 EILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYN--NSFE----YF--QEN 77 (99) Q Consensus 6 ~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yn--dale----~F--~~N 77 (99) =-|+++|.+|||. ++.+|.-|..+|.++..+|.+-+|. ++ ..+...|-.++--+=+-|. ++.. .. .-- T Consensus 1 vtLeevK~~LRID--~ddDD~lI~~~i~aA~~~i~~~~~~-~~-~~~~~~~~Avlllv~~~YenR~~~~~~~~~~~ip~~ 76 (92) T protein:vir:13 1 MDLRELKEYLRID--FEEDDILLRSLLLAAEEYLYNAGIK-RD-YKKSLYSLAIKILVKHWYDNRDCVVAGNVNNKLEYS 76 (92) T ss_pred CCHHHHHHHcCCC--CCcchHHHHHHHHHHHHHHHhhccc-cc-cchhHHHHHHHHHHHHhHhccccccccchhhhhhHH Confidence 2289999999996 6778999999999999999999994 32 3344566665555544443 2211 01 111 Q ss_pred HHHHHHHHHHHHhhcccccC Q lcl|NC_021539. 78 FISEIQSLQFDVAVNVNAES 97 (99) Q Consensus 78 f~~ei~~l~l~~~~~e~~~~ 97 (99) +.+-|. +++.. .+..+ T Consensus 77 v~sll~--~lR~~--~~~~~ 92 (92) T protein:vir:13 77 LNAILT--QLRYC--GDDNG 92 (92) T ss_pred HHHHHH--Hhhhc--cCCCC Confidence 222222 22221 11111 No 33 >protein:vir:80144 Length: 91 # NCBI annotation: hypothetical protein # Family: family:all:3227 # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425605;genbank:gi:155042938;genbank:GeneID:5469573 Probab=88.52 E-value=0.01 Score=31.53 Aligned_cols=89 Identities=15% Similarity=0.227 Sum_probs=74.1 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHHH--HHHHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFEY--FQENF 78 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale~--F~~Nf 78 (99) |. ++.+|+-+|.++-|+ +.--|..|+.+|++...-|...-|+.+|++.. .-.-+|.+++-+-|.+-=+. -..|- T Consensus 1 md-~~~il~LlK~~LGIs--t~~RD~yL~~iI~~v~~ELed~kGi~L~~~~~-~h~mf~vDyAawRY~~r~~~~~mPrhL 76 (91) T protein:vir:80 1 MD-TATVVALVKERLGIR--TTVRDTYITAIVDGVIKELEDEKGLVLDGANP-YHLMFVVDYATWRYQSRDSDGAMPRHL 76 (91) T ss_pred Cc-hHHHHHHHHHHhccc--chhhhHHHHHHHHHHHHHHHhcCCceecCCCh-hHhhHHhhHhHhhhccCCCcccchHHH Confidence 65 567999999999998 66789999999999999999999998998754 44788999998888877664 78888 Q ss_pred HHHHHHHHHHHhhcc Q lcl|NC_021539. 79 ISEIQSLQFDVAVNV 93 (99) Q Consensus 79 ~~ei~~l~l~~~~~e 93 (99) +--|-.+.++...+- T Consensus 77 qyRL~NliIk~rg~~ 91 (91) T protein:vir:80 77 QYRLHNLMIHVGGSP 91 (91) T ss_pred HHHHHhhhhcccCCC Confidence 888888887765433 No 34 >protein:vir:964 Length: 93 # NCBI annotation: Orf46 # Family: family:all:3227 # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076618;genbank:gi:13095726;genbank:GeneID:920285 Probab=87.95 E-value=0.02 Score=29.84 Aligned_cols=91 Identities=18% Similarity=0.258 Sum_probs=72.8 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHH--hhhHHHHHHHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAY--NNSFEYFQENF 78 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~y--ndale~F~~Nf 78 (99) |.+ +.+|+-+|.++-|+ +.--|..|+.+|++...-|...-|+.+|++.. .-.-+|.+++-+-| ++.. --..|- T Consensus 1 md~-~~il~LlK~~LGIs--t~~RD~yL~~iI~~v~~ELed~kGi~L~~~~~-~h~mf~vDyAawRYk~~~~~-~mPrhL 75 (93) T protein:vir:96 1 MDE-DSILNLVKAVLGYR--SAVRDELLKVIIKSVITELKDNKGIVLEPKSD-EQVMFIVDLAAFRYKHQGGE-TMPRNL 75 (93) T ss_pred Cch-HHHHHHHHHHhccc--chhhhHHHHHHHHHHHHHHHhhcCceecCCCh-hHHHHHHHHhHhhhccCCCc-chhHHH Confidence 664 67999999999998 67789999999999999999999998998754 44778888875555 4644 578888 Q ss_pred HHHHHHHHHHHhhccccc Q lcl|NC_021539. 79 ISEIQSLQFDVAVNVNAE 96 (99) Q Consensus 79 ~~ei~~l~l~~~~~e~~~ 96 (99) +--|-.|.++...+-+-. T Consensus 76 qyRl~nlii~~r~k~~vg 93 (93) T protein:vir:96 76 EYRLRNLIIKYRGKNDVG 93 (93) T ss_pred HHHHHHHHHhhcccccCC Confidence 888888888776655444 No 35 >protein:vir:4512 Length: 107 # NCBI annotation: unknown # Family: family:all:363 # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599038;genbank:gi:19548996;genbank:GeneID:935218 Probab=87.37 E-value=0.0096 Score=31.64 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=43.4 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCc-------------chHHHHHHHHHHHHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKE-------------DAAKQLLFDGVRYAY 67 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~-------------~~~keLv~er~RY~y 67 (99) |-|| |+++|.++||.=+.+.+|.-|...|+++..++.+.+|.+++-... ...|--++--+=|-| T Consensus 1 M~vt---L~e~K~hLRId~D~~ddD~lI~~~i~AA~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~AvLllv~~~Y 77 (107) T protein:vir:45 1 MLLK---MEEIKLQLRLDDDFSDEDELLELLGKAAQSRTENFLNRKLYATADDRPADDPDGLVISDDVKLALLLLVSHFY 77 (107) T ss_pred CCCC---HHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCChhHHHHHHHHHHHHH Confidence 7776 899999999962223577788999999999999999966542211 112222222222222 Q ss_pred hh--hH---HHHHHHHHHHHHHHHHHH-hh Q lcl|NC_021539. 68 NN--SF---EYFQENFISEIQSLQFDV-AV 91 (99) Q Consensus 68 nd--al---e~F~~Nf~~ei~~l~l~~-~~ 91 (99) .+ +. ...+-+|.-+-+=..++. .+ T Consensus 78 ~NRe~~~~~~~~~lp~~v~~Ll~~~R~~~~ 107 (107) T protein:vir:45 78 ENRSTVTDVEKMELPMSFNWLVAPYRLIPL 107 (107) T ss_pred hhhhhccccchhccchHHHHHHHHHhhcCC Confidence 11 00 000111110000000000 00 No 36 >protein:vir:4458 Length: 107 # NCBI annotation: hypothetical protein # Family: family:all:363 # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700381;genbank:gi:23505453;genbank:GeneID:955660 Probab=87.20 E-value=0.016 Score=30.47 Aligned_cols=82 Identities=18% Similarity=0.184 Sum_probs=42.4 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcc----hHHHHHHHHHHHHHhhhHHHHHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKED----AAKQLLFDGVRYAYNNSFEYFQE 76 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~----~~keLv~er~RY~yndale~F~~ 76 (99) |-|| |+++|.+|||.-+.+++|.-|...|.++..+|.+.+|..+.=.... .+..+ .+.. T Consensus 1 M~vt---Lee~K~hLRId~D~~dDD~lI~~~i~AA~~~i~~~~~r~l~~~~~~~~~~~~~~~--------------~~~~ 63 (107) T protein:vir:44 1 MLLS---VEEIKAQLRLDEDFEADERYLQLLARAVQKRTETYLNRKLYAPDETIPDSDPDGL--------------LLQD 63 (107) T ss_pred CCCC---HHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHhhcCccccccccccccccccc--------------cchh Confidence 7776 8999999999622235677899999999999999999554211000 00000 1111 Q ss_pred HHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 77 NFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 77 Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) .++.-++-|-=+.+-++..-.+. T Consensus 64 ~~~~AiLllv~~~Y~NRe~~~~~ 86 (107) T protein:vir:44 64 DIRLGMLMLISHFYENRSSVTEV 86 (107) T ss_pred hHHHHHHHHHHHHHhhhhhhccc Confidence 12222222221222222111111 No 37 >protein:vir:7410 Length: 107 # NCBI annotation: hypothetical protein # Family: family:all:734 # ACLAME annotation(s): phi:0000018 - phage genome packaging # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839927;genbank:gi:30089897;genbank:GeneID:1260684 Probab=85.33 E-value=0.024 Score=29.48 Aligned_cols=91 Identities=12% Similarity=0.080 Sum_probs=52.1 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccC---CCC-cc---hHH--HHHHHHHHHHHhhhH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFT---FEK-ED---AAK--QLLFDGVRYAYNNSF 71 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d---~~~-~~---~~k--eLv~er~RY~yndal 71 (99) |.|+ |+++|+.+||. | .+|.-|+..|.++..+|++-+|.... |-. +. ..+ =|++--..|..-.|. T Consensus 1 M~v~---LdeiK~~LRID--d-dDD~ll~~~i~aAe~yI~~Aig~~~~~~~fy~~e~~~~l~~~Avl~La~~wYeNR~at 74 (107) T protein:vir:74 1 MSVT---VDDLLDQLSED--D-DRKPQLQIYFDTATAYVKNAVSSDTVDAPFFNVENVSPIYDVAVLSYSMDLWINRSTT 74 (107) T ss_pred Ceec---HHHHHHHcCCC--C-ChhHHHHHHHHHHHHHHhhhcCCcccccccccccCcchHHHHHHHHHHHHHHHhcccc Confidence 7776 88999999996 3 36889999999999999999994211 211 11 122 345555667666664 Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc----cCCC Q lcl|NC_021539. 72 EYFQENFISEIQSLQFDVAVNVNA----ESQS 99 (99) Q Consensus 72 e~F~~Nf~~ei~~l~l~~~~~e~~----~~~s 99 (99) . .-.|.-.=+=.||+....-.. .++. T Consensus 75 ~--~vp~~v~siI~QLRg~y~~~~e~~~~~~~ 104 (107) T protein:vir:74 75 M--PPTTAVDHMVGQLRGLYSSWKEEQGGQNL 104 (107) T ss_pred c--cccHHHHHHHHHHhhcccchhhhcCCCcc Confidence 2 223333222223333221111 1111 No 38 >protein:vir:486 Length: 107 # NCBI annotation: hypothetical protein # Family: family:all:363 # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543093;swissprot:trembl:q8w626;genbank:gi:18249905;uniprot:Q8W626;genbank:GeneID:929692 Probab=84.74 E-value=0.022 Score=29.66 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=44.8 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHHHHHHHHHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFEYFQENFIS 80 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale~F~~Nf~~ 80 (99) |-|| |+++|.+|||.-+.+++|.-|...|.++..++.+.+|.+++-.....+.. - .++ -.+...++. T Consensus 1 M~vt---L~e~K~hLRid~D~~ddD~li~~~i~aA~~~i~~~~~r~l~~~~~~~~~~-~--------~~~-~~~~~~ik~ 67 (107) T protein:vir:48 1 MLLK---EEEIKSHLRLDDGLYSDGDFLKLLAQAVQKRTETYLNRKLYAPEETIPED-D--------PDG-MHLTDDVRL 67 (107) T ss_pred CCCC---HHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHhcccccccccccccc-C--------ccc-cccchhHHH Confidence 7776 89999999996222257888999999999999999996543211110000 0 000 012222333 Q ss_pred HHHHHHHHHhhcccccCCC Q lcl|NC_021539. 81 EIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 81 ei~~l~l~~~~~e~~~~~s 99 (99) -++-+--+.+-++..-.+. T Consensus 68 Avlllv~~~Y~NRe~v~~~ 86 (107) T protein:vir:48 68 AMLMLVSHFYENRSTITDV 86 (107) T ss_pred HHHHHHHHHHhhhhhhccc Confidence 3333332322222211111 No 39 >protein:vir:100245 Length: 113 # NCBI annotation: gp74 # Family: family:all:363 # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355410;genbank:gi:77864700;genbank:GeneID:3725967 Probab=84.42 E-value=0.043 Score=28.07 Aligned_cols=86 Identities=12% Similarity=0.117 Sum_probs=49.2 Q ss_pred CC-CCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCC-------------------CcchHHHHHH Q lcl|NC_021539. 1 MQ-VSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFE-------------------KEDAAKQLLF 60 (99) Q Consensus 1 m~-i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~-------------------~~~~~keLv~ 60 (99) |- || |+++|..|||. |+.+|.-|...|.++..++.+.+|.++.-. .+...|.-++ T Consensus 1 M~~vt---Lee~K~hLRvd--~d~dD~lI~~li~AA~~~ve~~l~r~l~~~~~~~~~~~~~~~~~~~~~~~p~~i~~AvL 75 (113) T protein:vir:10 1 MALVE---LKLALGFVRAN--AGVEDDVVQMLLDAATQSAVDYLNRQVFETEDAMTTAIEAGTAGQNPMVVNAAIRAAIL 75 (113) T ss_pred CCCCC---HHHHHHHcCCC--CCcchHHHHHHHHHHHHHHHHHhCccccccccccccccccccccccccccChHHHHHHH Confidence 44 33 99999999997 777899999999999999999998543211 0122344444 Q ss_pred HHHHHHHh--hhHHHH-----HHHHHHHHHHHHHHHhh Q lcl|NC_021539. 61 DGVRYAYN--NSFEYF-----QENFISEIQSLQFDVAV 91 (99) Q Consensus 61 er~RY~yn--dale~F-----~~Nf~~ei~~l~l~~~~ 91 (99) --+=+-|. .+.-.. .--+..-|.-+..--+| T Consensus 76 llv~~~Y~nRe~~~~~~~~~lP~~v~~Ll~~yR~~~g~ 113 (113) T protein:vir:10 76 KITAELYANREDTAFGPITELPLNARALLRPHRIIPGV 113 (113) T ss_pred HHHHHHHhhhhhhchhhhhccCHHHHHHHHHhhhhcCC Confidence 43333332 111111 11133333333333344 No 40 >protein:vir:6213 Length: 86 # NCBI annotation: hypothetical protein # Family: family:all:10883 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852593;genbank:gi:31415853;genbank:GeneID:1489211 Probab=82.56 E-value=0.065 Score=27.10 Aligned_cols=86 Identities=13% Similarity=0.320 Sum_probs=60.9 Q ss_pred CHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHHHHHHHHHHHHH Q lcl|NC_021539. 4 SDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFEYFQENFISEIQ 83 (99) Q Consensus 4 ~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale~F~~Nf~~ei~ 83 (99) |+.|++.||+.+| |.+.-.|.=|+=-|.++..+.++.||.. ..---+...-.-|.|.-+-..-..- ..-|. T Consensus 1 md~l~eklK~Hi~--~EegMDdsMLsFYl~~~kkYv~~atg~q------~~yl~~mvA~I~~~yrv~e~el~~A-l~Alt 71 (86) T protein:vir:62 1 MDNLIEKLKSHIH--WEEGMDDSMLSLYIKQGQRYVKKACGRE------VEYLVIMCAGIFYEYRVAEKELEQA-LDALT 71 (86) T ss_pred ChhHHHHHHHhhh--hhcCCChhHHHHHHHHHHHHHhhhcCCc------hHHHHHHHHHHHHhhcCcHHHHHHH-HHhhh Confidence 9999999998655 6666667778888999999999999942 1234455566778887666655443 34567 Q ss_pred HHHHHHhhcccccCC Q lcl|NC_021539. 84 SLQFDVAVNVNAESQ 98 (99) Q Consensus 84 ~l~l~~~~~e~~~~~ 98 (99) -|.++........++ T Consensus 72 Pf~~qEv~~aee~d~ 86 (86) T protein:vir:62 72 PFFVQEVYDAEEEDE 86 (86) T ss_pred hHHHHHHhhhhcccC Confidence 777777665444444 No 41 >protein:vir:99517 Length: 124 # NCBI annotation: putative protein # Family: family:all:372 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958539;genbank:gi:41179321;genbank:GeneID:2717155 Probab=80.30 E-value=0.022 Score=29.70 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=50.0 Q ss_pred CC-CCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhh--------- Q lcl|NC_021539. 1 MQ-VSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNS--------- 70 (99) Q Consensus 1 m~-i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~ynda--------- 70 (99) |. .+.+.|+.+|-++-|+ ++..|+-|..+|+.+..+|+..+|..-.+ +.+..-.|.+=+=-.||.- T Consensus 1 m~~~~~~~Le~vK~~LgI~--d~~~D~lL~~lI~~a~~~i~~~l~~~e~i--P~~L~~Iv~evavkryNR~g~EG~~S~S 76 (124) T protein:vir:99 1 MNDVLDDQLKKLKTALQLT--DTKHDDLLKLYLEDATDFLKLRLSITGVI--PTEMLAIVRGAAVKKFNRFKNEGMASYS 76 (124) T ss_pred CCcchHHHHHHHHHHhCCC--CcchhHHHHHHHHHHHHHHHHhcCCcccc--hhHHHHHHHHHHHHHhcccCCcccceee Confidence 54 4456899999999997 66779999999999999999999953112 1122222333222223321 Q ss_pred ----HHHHHHHHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 71 ----FEYFQENFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 71 ----le~F~~Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) ---|..|...+..+.- +...+.....-. T Consensus 77 eeG~S~sf~d~d~~~y~~~L-~~y~~~~~~~g~ 108 (124) T protein:vir:99 77 QDGESITFASSDFDEWEDEI-NQWRKDHTGMNK 108 (124) T ss_pred eCceeeeecccChhhHHHHH-HHHhhccCcCCc Confidence 1124443333332211 111111111101 No 42 >protein:vir:93592 Length: 108 # NCBI annotation: hypothetical protein # Family: family:all:1879 # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449297;genbank:gi:157166045;uniprot:Q6H9U4;genbank:GeneID:5580414 Probab=78.06 E-value=0.044 Score=28.04 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=43.5 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccC-CC-Ccch---------HHH--HHHHHHHHHH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFT-FE-KEDA---------AKQ--LLFDGVRYAY 67 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d-~~-~~~~---------~ke--Lv~er~RY~y 67 (99) |-|| |+++|.++||. |+.+|.-|...|.++..++.+-+|...+ +. .+.. .|. |++=--.|+. T Consensus 3 ~~vt---LeevK~hLRId--~d~dD~li~~~i~aA~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~i~~AvLlLv~~~Yen 77 (108) T protein:vir:93 3 ALLT---LEEIKAHLRVD--HDADDDMLMDKVRQATAVLLAYIQGSRDKVIREDGELIPGEALTRMKGAAMRLTGMLYRN 77 (108) T ss_pred cCCC---HHHHHHHcCCC--CCcChHHHHHHHHHHHHHHHHHhccccccccccccccccccCChHHHHHHHHHHHHHHhc Confidence 3333 89999999997 7778999999999999999887764322 11 1111 122 2222223332 Q ss_pred hhhHH--HHHHH-----HHHHHHHHHHHHhh Q lcl|NC_021539. 68 NNSFE--YFQEN-----FISEIQSLQFDVAV 91 (99) Q Consensus 68 ndale--~F~~N-----f~~ei~~l~l~~~~ 91 (99) -.+.. -+..+ +.+-|..+.----+ T Consensus 78 Re~~~~~~~~~~elP~~v~~Ll~~~R~p~~~ 108 (108) T protein:vir:93 78 PDLAEREELLQGELPFSVSVLIYDLRCPTVL 108 (108) T ss_pred cccccccccccccCCHHHHHHHHHccccccC Confidence 22221 11111 11122211111111 No 43 >protein:vir:9877 Length: 114 # NCBI annotation: hypothetical protein # Family: family:all:2716 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795639;genbank:gi:28876402;genbank:GeneID:1257933 Probab=77.38 E-value=0.076 Score=26.71 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=46.5 Q ss_pred CCCCHH-HHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCc--chHHHHHHHHHHHHHhhh------- Q lcl|NC_021539. 1 MQVSDE-ILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKE--DAAKQLLFDGVRYAYNNS------- 70 (99) Q Consensus 1 m~i~~~-lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~--~~~keLv~er~RY~ynda------- 70 (99) |.-+.+ +|+.+|-++-|+ ++..|+-|..+|+.+..+|+-.+|.+ .+.+. -...+.+.- ||-+-++ T Consensus 1 m~~~~~~~L~~vK~~Lgi~--d~~~D~lL~~ii~~~~~~i~~~l~~~-~iP~~L~~Iv~ev~vk--ryNR~g~EG~~S~S 75 (114) T protein:vir:98 1 MDETKQAIIDRVRVRLADE--TSLKEELLEELTQTAIDRINLKVGDV-VFNPLFNSIAVDVVVK--MYRRMYFEGIDTEK 75 (114) T ss_pred CchhHHHHHHHHHHHhCCC--CCchhhHHHHHHHHHHHHHHHhhCcc-ccchHHHHHHHHHHHH--HhcccCccccceee Confidence 776654 899999999996 67789999999999999999999953 32221 112222221 2222110 Q ss_pred ----HHHHHHH----HHHHHHHHHHHHhhcccccC-CC Q lcl|NC_021539. 71 ----FEYFQEN----FISEIQSLQFDVAVNVNAES-QS 99 (99) Q Consensus 71 ----le~F~~N----f~~ei~~l~l~~~~~e~~~~-~s 99 (99) .=-|..| |..+|... ..........+ -. T Consensus 76 ~eG~S~tf~dndf~ey~~~l~~y-~~~~~~~~~g~~v~ 112 (114) T protein:vir:98 76 ADTISTKFIENVLAEYGEELASY-KKDRLAILNKKVVR 112 (114) T ss_pred ccceeeeeeccccchhHHHHHHH-HhhhhhhhcCceee Confidence 0012222 11111111 00000000000 00 No 44 >protein:vir:9311 Length: 110 # NCBI annotation: phi Mu50B-like protein # Family: family:all:372 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803289;genbank:gi:29028599;genbank:GeneID:1258047 Probab=76.07 E-value=0.087 Score=26.39 Aligned_cols=92 Identities=12% Similarity=0.183 Sum_probs=46.1 Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhh-------------H Q lcl|NC_021539. 5 DEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNS-------------F 71 (99) Q Consensus 5 ~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~ynda-------------l 71 (99) =+.|+.+|-++-|+ ++..|+-|..+|+.+..+|+..+|...+ +-+.+..-.+.+=+=..||.- - T Consensus 1 M~~L~~vK~~lgI~--d~~~D~lL~~ii~~a~~~i~~~l~~~~~-~iP~~l~~iv~ev~vkryNR~g~EG~~S~S~eG~S 77 (110) T protein:vir:93 1 MTTLADVKKRIGLK--DEKQDEQLEEIIKSCESQLLSMLPIEVE-QIPERFSYMIKEVAVKRYNRIGAEGMTSEAVDGRS 77 (110) T ss_pred CchHHHHHHHhCCC--CCchhHHHHHHHHHHHHHHHHHhccchh-hhhhHHHHHHHHHHHHHhcccCccccceeecCcee Confidence 24689999999997 7778999999999999999999993211 112222333333333333321 1 Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 72 EYFQENFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 72 e~F~~Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) --|..|...+..+.--...-+......- T Consensus 78 ~sf~d~d~~~y~~~l~~y~~~~~~~~kG 105 (110) T protein:vir:93 78 NAYELNDFKEYEAIIDNYFNARTRTKKG 105 (110) T ss_pred eeecccccchHHHHHHHHHhhcCCCCCc Confidence 1132222222211111110000000000 No 45 >protein:vir:97145 Length: 110 # NCBI annotation: ORF049 # Family: family:all:372 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239728;genbank:gi:66394913;genbank:GeneID:5130878 Probab=76.07 E-value=0.087 Score=26.39 Aligned_cols=92 Identities=12% Similarity=0.183 Sum_probs=46.1 Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhh-------------H Q lcl|NC_021539. 5 DEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNS-------------F 71 (99) Q Consensus 5 ~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~ynda-------------l 71 (99) =+.|+.+|-++-|+ ++..|+-|..+|+.+..+|+..+|...+ +-+.+..-.+.+=+=..||.- - T Consensus 1 M~~L~~vK~~lgI~--d~~~D~lL~~ii~~a~~~i~~~l~~~~~-~iP~~l~~iv~ev~vkryNR~g~EG~~S~S~eG~S 77 (110) T protein:vir:97 1 MTTLADVKKRIGLK--DEKQDEQLEEIIKSCESQLLSMLPIEVE-QIPERFSYMIKEVAVKRYNRIGAEGMTSEAVDGRS 77 (110) T ss_pred CchHHHHHHHhCCC--CCchhHHHHHHHHHHHHHHHHHhccchh-hhhhHHHHHHHHHHHHHhcccCccccceeecCcee Confidence 24689999999997 7778999999999999999999993211 112222333333333333321 1 Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 72 EYFQENFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 72 e~F~~Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) --|..|...+..+.--...-+......- T Consensus 78 ~sf~d~d~~~y~~~l~~y~~~~~~~~kG 105 (110) T protein:vir:97 78 NAYELNDFKEYEAIIDNYFNARTRTKKG 105 (110) T ss_pred eeecccccchHHHHHHHHHhhcCCCCCc Confidence 1132222222211111110000000000 No 46 >protein:vir:103957 Length: 110 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873994;genbank:gi:118430769;genbank:GeneID:4525451 Probab=76.07 E-value=0.087 Score=26.39 Aligned_cols=92 Identities=12% Similarity=0.183 Sum_probs=46.1 Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhh-------------H Q lcl|NC_021539. 5 DEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNS-------------F 71 (99) Q Consensus 5 ~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~ynda-------------l 71 (99) =+.|+.+|-++-|+ ++..|+-|..+|+.+..+|+..+|...+ +-+.+..-.+.+=+=..||.- - T Consensus 1 M~~L~~vK~~lgI~--d~~~D~lL~~ii~~a~~~i~~~l~~~~~-~iP~~l~~iv~ev~vkryNR~g~EG~~S~S~eG~S 77 (110) T protein:vir:10 1 MTTLADVKKRIGLK--DEKQDEQLEEIIKSCESQLLSMLPIEVE-QIPERFSYMIKEVAVKRYNRIGAEGMTSEAVDGRS 77 (110) T ss_pred CchHHHHHHHhCCC--CCchhHHHHHHHHHHHHHHHHHhccchh-hhhhHHHHHHHHHHHHHhcccCccccceeecCcee Confidence 24689999999997 7778999999999999999999993211 112222333333333333321 1 Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 72 EYFQENFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 72 e~F~~Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) --|..|...+..+.--...-+......- T Consensus 78 ~sf~d~d~~~y~~~l~~y~~~~~~~~kG 105 (110) T protein:vir:10 78 NAYELNDFKEYEAIIDNYFNARTRTKKG 105 (110) T ss_pred eeecccccchHHHHHHHHHhhcCCCCCc Confidence 1132222222211111110000000000 No 47 >protein:vir:96221 Length: 110 # NCBI annotation: ORF044 # Family: family:all:372 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239573;genbank:gi:66395333;genbank:GeneID:5132767 Probab=76.07 E-value=0.087 Score=26.39 Aligned_cols=92 Identities=12% Similarity=0.183 Sum_probs=46.1 Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhh-------------H Q lcl|NC_021539. 5 DEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNS-------------F 71 (99) Q Consensus 5 ~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~ynda-------------l 71 (99) =+.|+.+|-++-|+ ++..|+-|..+|+.+..+|+..+|...+ +-+.+..-.+.+=+=..||.- - T Consensus 1 M~~L~~vK~~lgI~--d~~~D~lL~~ii~~a~~~i~~~l~~~~~-~iP~~l~~iv~ev~vkryNR~g~EG~~S~S~eG~S 77 (110) T protein:vir:96 1 MTTLADVKKRIGLK--DEKQDEQLEEIIKSCESQLLSMLPIEVE-QIPERFSYMIKEVAVKRYNRIGAEGMTSEAVDGRS 77 (110) T ss_pred CchHHHHHHHhCCC--CCchhHHHHHHHHHHHHHHHHHhccchh-hhhhHHHHHHHHHHHHHhcccCccccceeecCcee Confidence 24689999999997 7778999999999999999999993211 112222333333333333321 1 Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 72 EYFQENFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 72 e~F~~Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) --|..|...+..+.--...-+......- T Consensus 78 ~sf~d~d~~~y~~~l~~y~~~~~~~~kG 105 (110) T protein:vir:96 78 NAYELNDFKEYEAIIDNYFNARTRTKKG 105 (110) T ss_pred eeecccccchHHHHHHHHHhhcCCCCCc Confidence 1132222222211111110000000000 No 48 >protein:vir:96390 Length: 110 # NCBI annotation: ORF048 # Family: family:all:372 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239650;genbank:gi:66395410;genbank:GeneID:5132866 Probab=76.07 E-value=0.087 Score=26.39 Aligned_cols=92 Identities=12% Similarity=0.183 Sum_probs=46.1 Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhh-------------H Q lcl|NC_021539. 5 DEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNS-------------F 71 (99) Q Consensus 5 ~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~ynda-------------l 71 (99) =+.|+.+|-++-|+ ++..|+-|..+|+.+..+|+..+|...+ +-+.+..-.+.+=+=..||.- - T Consensus 1 M~~L~~vK~~lgI~--d~~~D~lL~~ii~~a~~~i~~~l~~~~~-~iP~~l~~iv~ev~vkryNR~g~EG~~S~S~eG~S 77 (110) T protein:vir:96 1 MTTLADVKKRIGLK--DEKQDEQLEEIIKSCESQLLSMLPIEVE-QIPERFSYMIKEVAVKRYNRIGAEGMTSEAVDGRS 77 (110) T ss_pred CchHHHHHHHhCCC--CCchhHHHHHHHHHHHHHHHHHhccchh-hhhhHHHHHHHHHHHHHhcccCccccceeecCcee Confidence 24689999999997 7778999999999999999999993211 112222333333333333321 1 Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 72 EYFQENFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 72 e~F~~Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) --|..|...+..+.--...-+......- T Consensus 78 ~sf~d~d~~~y~~~l~~y~~~~~~~~kG 105 (110) T protein:vir:96 78 NAYELNDFKEYEAIIDNYFNARTRTKKG 105 (110) T ss_pred eeecccccchHHHHHHHHHhhcCCCCCc Confidence 1132222222211111110000000000 No 49 >protein:vir:99796 Length: 110 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004309;genbank:gi:122891763;genbank:GeneID:4712351 Probab=76.07 E-value=0.087 Score=26.39 Aligned_cols=92 Identities=12% Similarity=0.183 Sum_probs=46.1 Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhh-------------H Q lcl|NC_021539. 5 DEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNS-------------F 71 (99) Q Consensus 5 ~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~ynda-------------l 71 (99) =+.|+.+|-++-|+ ++..|+-|..+|+.+..+|+..+|...+ +-+.+..-.+.+=+=..||.- - T Consensus 1 M~~L~~vK~~lgI~--d~~~D~lL~~ii~~a~~~i~~~l~~~~~-~iP~~l~~iv~ev~vkryNR~g~EG~~S~S~eG~S 77 (110) T protein:vir:99 1 MTTLADVKKRIGLK--DEKQDEQLEEIIKSCESQLLSMLPIEVE-QIPERFSYMIKEVAVKRYNRIGAEGMTSEAVDGRS 77 (110) T ss_pred CchHHHHHHHhCCC--CCchhHHHHHHHHHHHHHHHHHhccchh-hhhhHHHHHHHHHHHHHhcccCccccceeecCcee Confidence 24689999999997 7778999999999999999999993211 112222333333333333321 1 Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 72 EYFQENFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 72 e~F~~Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) --|..|...+..+.--...-+......- T Consensus 78 ~sf~d~d~~~y~~~l~~y~~~~~~~~kG 105 (110) T protein:vir:99 78 NAYELNDFKEYEAIIDNYFNARTRTKKG 105 (110) T ss_pred eeecccccchHHHHHHHHHhhcCCCCCc Confidence 1132222222211111110000000000 No 50 >protein:vir:78849 Length: 110 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285363;genbank:gi:148717891;genbank:GeneID:5246980 Probab=76.07 E-value=0.087 Score=26.39 Aligned_cols=92 Identities=12% Similarity=0.183 Sum_probs=46.1 Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhh-------------H Q lcl|NC_021539. 5 DEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNS-------------F 71 (99) Q Consensus 5 ~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~ynda-------------l 71 (99) =+.|+.+|-++-|+ ++..|+-|..+|+.+..+|+..+|...+ +-+.+..-.+.+=+=..||.- - T Consensus 1 M~~L~~vK~~lgI~--d~~~D~lL~~ii~~a~~~i~~~l~~~~~-~iP~~l~~iv~ev~vkryNR~g~EG~~S~S~eG~S 77 (110) T protein:vir:78 1 MTTLADVKKRIGLK--DEKQDEQLEEIIKSCESQLLSMLPIEVE-QIPERFSYMIKEVAVKRYNRIGAEGMTSEAVDGRS 77 (110) T ss_pred CchHHHHHHHhCCC--CCchhHHHHHHHHHHHHHHHHHhccchh-hhhhHHHHHHHHHHHHHhcccCccccceeecCcee Confidence 24689999999997 7778999999999999999999993211 112222333333333333321 1 Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 72 EYFQENFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 72 e~F~~Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) --|..|...+..+.--...-+......- T Consensus 78 ~sf~d~d~~~y~~~l~~y~~~~~~~~kG 105 (110) T protein:vir:78 78 NAYELNDFKEYEAIIDNYFNARTRTKKG 105 (110) T ss_pred eeecccccchHHHHHHHHHhhcCCCCCc Confidence 1132222222211111110000000000 No 51 >protein:vir:106596 Length: 128 # NCBI annotation: ORF042 # Family: family:all:372 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239495;genbank:gi:66395254;genbank:GeneID:4555750 Probab=76.01 E-value=0.071 Score=26.89 Aligned_cols=95 Identities=21% Similarity=0.262 Sum_probs=48.9 Q ss_pred CC--------------CCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHH Q lcl|NC_021539. 1 MQ--------------VSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYA 66 (99) Q Consensus 1 m~--------------i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~ 66 (99) |- -+-+.|+.+|-++-|+ ++..|+-|..+|+.+...|+..+|...+ +-+....-.+.+=+=-. T Consensus 1 ~~~~~~~~~~~~~~~~~~m~~Le~vK~~LgI~--d~~~D~lL~~lI~~a~~~i~~~l~~~~~-~iP~~L~~Iv~evaVkr 77 (128) T protein:vir:10 1 MVVTKLHKSLLQLNSGEVMNYLDDVKSRIGLN--DNEQDKQLNSIINNVAAELLSRLPVDTI-SIPDKLQFIVVEVSTKR 77 (128) T ss_pred CcccccccchheecHHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHHHHHHHHHcCCChh-hhhhhHHHHHHHHHHHH Confidence 22 2346799999999996 6677999999999999999999995311 11112222222222222 Q ss_pred Hhh-------------hHHHHHHH----HHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 67 YNN-------------SFEYFQEN----FISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 67 ynd-------------ale~F~~N----f~~ei~~l~l~~~~~e~~~~~s 99 (99) ||. ..--|..| |...|.+..-...- ...+.=. T Consensus 78 yNR~g~EG~~S~SeeG~S~tf~dnd~~~Y~~~L~~y~~~~~~-~~kG~v~ 126 (128) T protein:vir:10 78 YNRIGAEGMSTDSQDGRSNTFERNDFEEYQSIIDALYPKLDS-SERGSVN 126 (128) T ss_pred hcccCccCcceeeeCceeeeeccCCcchhHHHHHHHHhhccC-CCCCcee Confidence 221 11124444 44444333222110 0000000 No 52 >protein:vir:100885 Length: 110 # NCBI annotation: putative DNA packaging protein # Family: family:all:6491 # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358765;genbank:gi:78000029;genbank:GeneID:3726156 Probab=71.86 E-value=0.093 Score=26.25 Aligned_cols=96 Identities=15% Similarity=0.295 Sum_probs=56.8 Q ss_pred CCCCHHH-HHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccC---CCCcch---HHHHHHHHHHHHH---hhh Q lcl|NC_021539. 1 MQVSDEI-LQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFT---FEKEDA---AKQLLFDGVRYAY---NNS 70 (99) Q Consensus 1 m~i~~~l-L~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d---~~~~~~---~keLv~er~RY~y---nda 70 (99) |-=+..+ ++++|.+|+|- ++.+|.=|+.+|..+..+|++.+|-+.+ +.++.. |=.+|-+.==|.| .++ T Consensus 1 ~~~s~gVT~ddiK~~LriD--~~~DD~~L~~li~tAe~yI~~AI~~ti~~~~~~~~p~Fn~AV~lLvd~wY~nRga~s~~ 78 (110) T protein:vir:10 1 MTDGQGVTPEDMQQYLNLD--TNGDASVLADMISTAEEAITGAIDDTIDVGIYRKYPLFNQAVRVLVDFMYYSRGTLSDQ 78 (110) T ss_pred CCCCccccHHHHHHHhcCC--CCchhHHHHHHHHHHHHHHhhccCCCcchhhhhhchhhhHHHHHHHHHhhhcccccchh Confidence 6555554 99999999996 7778899999999999999999995443 223322 2223333222222 123 Q ss_pred HHHHHHHHHHHHHHHHHHH----hhcccccCC Q lcl|NC_021539. 71 FEYFQENFISEIQSLQFDV----AVNVNAESQ 98 (99) Q Consensus 71 le~F~~Nf~~ei~~l~l~~----~~~e~~~~~ 98 (99) .....--+.+-|+.|.... |.+.+.-+- T Consensus 79 ~~~~P~sv~smIqQlR~~~~~~~~~~~~~~~~ 110 (110) T protein:vir:10 79 SKAYPPSYAYMINSIRWKIQRDQAAKAGGTDG 110 (110) T ss_pred hcccchHHHHHHHHHHhhhhhhhhhccCCCCC Confidence 3444555666776655432 222111111 No 53 >protein:vir:9928 Length: 118 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795690;genbank:gi:28876458;genbank:GeneID:1258013 Probab=70.98 E-value=0.19 Score=24.52 Aligned_cols=93 Identities=18% Similarity=0.207 Sum_probs=51.4 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHH---HHHHHHHHHHHh--hh----- Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAK---QLLFDGVRYAYN--NS----- 70 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~k---eLv~er~RY~yn--da----- 70 (99) |-= +++|+.+|-++-|.=++...|+-|..+|+.+..+|+..||..-+......|. -.|.+-|=..|| ++ T Consensus 1 md~-~~~L~~vK~~lgI~~~D~~~D~lL~~~i~~a~~~i~~~l~~~~~~~~~eiP~~l~~iv~evav~ryNR~g~EG~~S 79 (118) T protein:vir:99 1 MGD-KQLIDDIKLFIGISKGDGAQDELITLAIYESKERVLAKLNEYSETEITKIPDRLRFIVRDVAIKRFNRINSEGAVE 79 (118) T ss_pred Cch-hhHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHhcCcCCcccce Confidence 332 4569999999999655677899999999999999999999421211122232 233333333333 11 Q ss_pred ----------HHHHHHHHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 71 ----------FEYFQENFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 71 ----------le~F~~Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) -+.|.+ |...|.+..-... ..+.. T Consensus 80 ~SeeG~S~sf~~d~~e-y~~~l~~~~~~~~----~~~~g 113 (118) T protein:vir:99 80 DSEEGKTFKWDSYLKE-YESTLRSAAIGKV----YSGKG 113 (118) T ss_pred eecCCeeeeeccCchh-HHHHHHHHhhhcc----cCcCc Confidence 112222 5555554421111 11111 No 54 >protein:vir:1026 Length: 107 # NCBI annotation: Orf46 # Family: family:all:734 # ACLAME annotation(s): phi:0000018 - phage genome packaging # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076680;genbank:gi:13095789;genbank:GeneID:920344 Probab=70.57 E-value=0.16 Score=24.96 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=51.7 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCc---cCCCC-cch---H--HHHHHHHHHHHHhhhH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVP---FTFEK-EDA---A--KQLLFDGVRYAYNNSF 71 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~---~d~~~-~~~---~--keLv~er~RY~yndal 71 (99) |.++ |+++|.-++|. | ..|.-|+..|.++..+|++-+|.+ -.|-. ++. . -=|.+--..|.+-.|. T Consensus 1 M~vt---ld~iK~sLriD--~-dDd~~l~~~l~aA~~YIk~Aig~d~~~~~Fy~~e~~~~lfd~Avl~La~~~Y~nR~at 74 (107) T protein:vir:10 1 MSVT---VDDLLDQLSED--D-DRKPQLQIYFDTATAYVKNAVSSDTVDAPFFNVENVSPIYDVAVLSYSMDLWINRSTT 74 (107) T ss_pred Ceec---HHHHHHHhcCC--C-CchHHHHHHHHHHHHHHhhhcCcccccCCccccccchhHHHHHHHHHHHHHhhcccce Confidence 7776 78899999996 3 368899999999999999999943 11322 111 1 1234555566666664 Q ss_pred HHHHHHHHHHHHHHHHHHhh-cccccCCC Q lcl|NC_021539. 72 EYFQENFISEIQSLQFDVAV-NVNAESQS 99 (99) Q Consensus 72 e~F~~Nf~~ei~~l~l~~~~-~e~~~~~s 99 (99) .- -.|...=+=.||+... ...++++. T Consensus 75 ~~--vp~~v~siI~QLRg~y~~~~e~~~~ 101 (107) T protein:vir:10 75 MP--PTTAVDHMVGQLRGLYSSWKEAQDG 101 (107) T ss_pred ee--cchHHHHHHHHHhhhhcccccccCC Confidence 31 2233221222444333 12222222 No 55 >protein:vir:106583 Length: 105 # NCBI annotation: putative protein # Family: family:all:6481 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958586;genbank:gi:41179246;genbank:GeneID:2717119 Probab=70.52 E-value=0.14 Score=25.28 Aligned_cols=88 Identities=10% Similarity=0.140 Sum_probs=46.4 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHH-------- Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFE-------- 72 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale-------- 72 (99) |-=.+++++.+|...-++ +...|+.|..+|+.+.+.+.+.||.+ .+-+ .-.-.+.+-+=..||.--. T Consensus 1 ~~~~~~~~e~ik~L~~~~--d~~~DelL~~lieda~~~vl~y~nr~-~ip~--~l~~~v~evav~~fNR~G~EG~tS~Se 75 (105) T protein:vir:10 1 MLNVDQLTEIVSALSTRL--ENVNNALLTELVKESIAQVLDYTGQK-KLVG--SMDIYVKKLAVINYNRLGIEGETQRSE 75 (105) T ss_pred CCchHHHHHHHHHHhccC--CCchhHHHHHHHHHHHHHHHHHcCCc-ccch--hHHHHHHHHHHHHhcccCCcccceeec Confidence 666779999999999887 67789999999999999999999942 2211 1112222222222221110 Q ss_pred -----HHHHH----HHHHHHHHHHHHhhcc Q lcl|NC_021539. 73 -----YFQEN----FISEIQSLQFDVAVNV 93 (99) Q Consensus 73 -----~F~~N----f~~ei~~l~l~~~~~e 93 (99) -|+.+ |...|-.........= T Consensus 76 gGvS~sy~~~~~~~~~~~l~~yR~~~v~~~ 105 (105) T protein:vir:10 76 GGITNYLETGIPKDIRQGLNSYRIAKVKKL 105 (105) T ss_pred CCeeeeeeccCcHHHHHHHHHHhhhcccCC Confidence 11111 1111111111111100 No 56 >protein:vir:10365 Length: 115 # NCBI annotation: conserved phage protein # Family: family:all:363 # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858957;genbank:gi:32128422;genbank:GeneID:2648387 Probab=70.49 E-value=0.12 Score=25.61 Aligned_cols=88 Identities=11% Similarity=0.071 Sum_probs=44.9 Q ss_pred CCCHHHHHHHHhhcCCCC-CChhhHHHHHHHHHHHHHHHHhhcCCccCCC---------------------CcchHHHHH Q lcl|NC_021539. 2 QVSDEILQEIKDYLRITW-TDTTEDNRLRKIIERVSARISQLAGVPFTFE---------------------KEDAAKQLL 59 (99) Q Consensus 2 ~i~~~lL~efK~r~~Itw-~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~---------------------~~~~~keLv 59 (99) =|| |+++|..|||.- +++.+|.-|...|.++..++.+.+|.++--. +.-..-=|+ T Consensus 1 mvt---Le~~K~hLRid~~d~d~dD~li~~~i~AA~~~v~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~p~~i~~AiLL 77 (115) T protein:vir:10 1 MIT---LAMVQRHLQAELYEDDERDYVMQQLLPAARESAELFINRKLYDTQADMLADQAAGVDPAGQLLITRTVEQAILL 77 (115) T ss_pred CCC---HHHHHHHcCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCcccccccccccccccccCCcccccCChHHHHHHHH Confidence 222 999999999964 3456788999999999999999998543100 001112233 Q ss_pred HHHHHHHHhhhHHHHHH---HH--HHHHHHHHHHHhhc Q lcl|NC_021539. 60 FDGVRYAYNNSFEYFQE---NF--ISEIQSLQFDVAVN 92 (99) Q Consensus 60 ~er~RY~yndale~F~~---Nf--~~ei~~l~l~~~~~ 92 (99) +=--.|..-.+.-.... .| ..-|.-+..-.++. T Consensus 78 lvg~~Y~nRe~~~~~~~~elP~~v~~LL~pyR~~~gv~ 115 (115) T protein:vir:10 78 TVGEWYANREQVWVKGVGLVTSSAQNLLHPYRKFAGVR 115 (115) T ss_pred HHHHHHhcchhcccchhhhcCHHHHHHHHHHHhcCCCC Confidence 33334443333333211 11 11111111111111 No 57 >protein:vir:3992 Length: 107 # NCBI annotation: unknown # Family: family:all:734 # ACLAME annotation(s): phi:0000018 - phage genome packaging # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116500;genbank:gi:14251133;genbank:GeneID:921311 Probab=66.84 E-value=0.26 Score=23.78 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=50.8 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccC---CCC-cc---hH--HHHHHHHHHHHHhhhH Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFT---FEK-ED---AA--KQLLFDGVRYAYNNSF 71 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d---~~~-~~---~~--keLv~er~RY~yndal 71 (99) |-|+ |+++|.-++|. | ..|.-|+..|.++.++|++-+|.+.. |-. ++ .+ -=|.+--..|.+-.|. T Consensus 1 M~Vt---ld~iK~sLriD--~-dDd~li~~yl~aA~~YIk~Avg~d~~~~~Fy~~~~~~~lf~~Avl~La~~~Y~nR~at 74 (107) T protein:vir:39 1 MTVT---VDDLLDQLSED--D-DRKPQLQIYFDTAKAYVKNAVSSDTVDAPFFSVENVYPIYDVAVLSYSMDLWINRSTT 74 (107) T ss_pred Ceec---HHHHHHHhcCC--C-ChhHHHHHHHHHHHHHHhhccCCcccCCCccccccchhHHHHHHHHHHHHHHHhcccc Confidence 7776 78899999996 3 36889999999999999999994321 321 21 11 1233445556555554 Q ss_pred HHHHHHHH--HHHHHHHHHHhh-cccccCCC Q lcl|NC_021539. 72 EYFQENFI--SEIQSLQFDVAV-NVNAESQS 99 (99) Q Consensus 72 e~F~~Nf~--~ei~~l~l~~~~-~e~~~~~s 99 (99) . .-.|. +-|..|.=..+. .+...++- T Consensus 75 ~--~v~~~v~siI~QLRg~y~~~~e~~~~~~ 103 (107) T protein:vir:39 75 M--PPTTAVDHMVGQLRGLYSSWKEAQDGQN 103 (107) T ss_pred c--ccchhHHHHHHHHHHhHHHHhhccCCCc Confidence 2 12232 333333322222 12222222 No 58 >protein:vir:94507 Length: 113 # NCBI annotation: putative DNA packaging protein # Family: family:all:372 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223891;genbank:gi:62327103;genbank:GeneID:5075523 Probab=62.16 E-value=0.3 Score=23.43 Aligned_cols=92 Identities=21% Similarity=0.174 Sum_probs=48.7 Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCC---cchHHHHHHHHHHHHHhhhHH--------- Q lcl|NC_021539. 5 DEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEK---EDAAKQLLFDGVRYAYNNSFE--------- 72 (99) Q Consensus 5 ~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~---~~~~keLv~er~RY~yndale--------- 72 (99) =++|+.+|-++-|+ ++..|+-|..+|+.+..+|+..+|. ..... +.+..-+|.+=|=..||.--. T Consensus 1 M~~L~~vK~~lgi~--d~~~D~lL~~iI~~a~~~i~~~l~~-~~~~~~~iP~~l~~Iv~evavkryNR~g~EG~~S~See 77 (113) T protein:vir:94 1 MALLDSIKLRIGIE--DTKQDDLLTDIISDVQARVLAYVNQ-DGLVQSELPNGLDFVIKDVTIRIYNKIGDEGKESSSEG 77 (113) T ss_pred CchHHHHHHHhCCC--CCchhhHHHHHHHHHHHHHHHHhCC-ccchhhhhhhHHHHHHHHHHHHHhcccCCccceeeecC Confidence 24799999999996 6778999999999999999999993 22222 223334455555445553211 Q ss_pred ----HHHH-HHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 73 ----YFQE-NFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 73 ----~F~~-Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) -|+. |...+-.+.--...-+..+.+.+ T Consensus 78 G~S~sf~~~~df~~y~~~l~~~~~~~~~~~~g 109 (113) T protein:vir:94 78 NVSNTWDTPADLSEYSDVLDVYRKSYKRRSAG 109 (113) T ss_pred ceeeeecCccchhhHHHHHHHHHhhccCCCCC Confidence 0211 22222111111111111111111 No 59 >protein:vir:3970 Length: 110 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663678;genbank:gi:21716115;genbank:GeneID:951203 Probab=57.24 E-value=0.13 Score=25.35 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=45.7 Q ss_pred CCCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCcc-CCCCcchHHHHHHHHHHHHHhhhH-------- Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPF-TFEKEDAAKQLLFDGVRYAYNNSF-------- 71 (99) Q Consensus 1 m~i~~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~-d~~~~~~~keLv~er~RY~yndal-------- 71 (99) |++ |+.+|-++-|+ .|+.|..+|+.+..+|+..+|... ++ +.+..-.+.+=+=..||.-- T Consensus 1 M~i----L~~vK~~lgi~-----~D~lL~~li~~a~~~i~~~l~~~~~~i--P~~l~~iv~evav~ryNR~g~EG~~S~S 69 (110) T protein:vir:39 1 MAI----TDDLKKLLGGS-----SDERLEVIEKRTRERLLLILSSNIKEV--PPELEYVVLDVSLKRFNRIGQEGMQSYS 69 (110) T ss_pred Cch----HHHHHHhcCCC-----hhHHHHHHHHHHHHHHHHHhCCChhhh--hhHHHHHHHHHHHHHhccccccccceee Confidence 654 99999999995 488999999999999999999421 11 22222233333323333211 Q ss_pred -----HHHHH----HHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 72 -----EYFQE----NFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 72 -----e~F~~----Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) --|.. .|..+|-+....+.. ....+-. T Consensus 70 eeG~S~sf~~~d~~~y~~~l~~y~~~~~~-~~~~~~g 105 (110) T protein:vir:39 70 QEGLSMTFSESDFDEYADEIESWRKSKET-EGDKKIG 105 (110) T ss_pred cCCeeeeecccCcchhHHHHHHHhhhccc-cccCcce Confidence 12333 334444433322111 1111111 No 60 >protein:vir:3846 Length: 126 # NCBI annotation: hypothetical protein # Family: family:all:734 # ACLAME annotation(s): phi:0000018 - phage genome packaging # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050152;swissprot:trembl:q9t1f5;genbank:gi:9633044;uniprot:Q9T1F5;genbank:GeneID:1262150 Probab=54.89 E-value=0.49 Score=22.27 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=50.9 Q ss_pred CCCCHH---HHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccC-CCC-cc---hHHHHHHHHHH--HHHhhh Q lcl|NC_021539. 1 MQVSDE---ILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFT-FEK-ED---AAKQLLFDGVR--YAYNNS 70 (99) Q Consensus 1 m~i~~~---lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d-~~~-~~---~~keLv~er~R--Y~ynda 70 (99) .-|.+. .|.++|.-++|. +..|..|+..|.++..+|+.-+|.... |=. +. ..+--|+..+- |.+-.| T Consensus 5 ~~~~~~l~~~L~~lk~~lrlD---ddDd~~l~~~l~AA~~yIk~AVG~d~~~Fy~~e~v~plf~lAvl~La~~yY~nRsA 81 (126) T protein:vir:38 5 LKITDGLKRSLGYLDEDTSLD---EGLQKRMSSALIAAESYVQHAIGTDVKDFYISEENKPLYTLVCNALAASYVQNPVS 81 (126) T ss_pred eeechhhhhHHHHhHHhccCC---CchHHHHHHHHHHHHHHHhhhccCCcccchhccCCchHHHHHHHHHHHhhhhccch Confidence 456655 499999999996 456899999999999999999994322 322 21 33333443333 222222 Q ss_pred H---HHHHHHH--HHHHHHHHHHHhhcccc---------cCCC Q lcl|NC_021539. 71 F---EYFQENF--ISEIQSLQFDVAVNVNA---------ESQS 99 (99) Q Consensus 71 l---e~F~~Nf--~~ei~~l~l~~~~~e~~---------~~~s 99 (99) + .-++-.| -+-|..|.=..+..... .++| T Consensus 82 tt~~~~~~Vp~~~~siI~QLRg~Y~~~qe~~~~~~t~~~~~d~ 124 (126) T protein:vir:38 82 ITSGAVVNVDIVTNAIIGQLRGRYAKELEAQDGQNTKSQSSDS 124 (126) T ss_pred hccccccccchHHHHHHHHHHhhHHHHhhhcCCCCcccCCccC Confidence 2 1222222 23333333332221111 1111 No 61 >protein:vir:4904 Length: 113 # NCBI annotation: gp113 # Family: family:all:372 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056682;genbank:gi:9635017;genbank:GeneID:1262667 Probab=54.48 E-value=0.4 Score=22.76 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=48.3 Q ss_pred CCCCHHH--HHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHHH----- Q lcl|NC_021539. 1 MQVSDEI--LQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFEY----- 73 (99) Q Consensus 1 m~i~~~l--L~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale~----- 73 (99) |..+++. |+.+|.++-|+ + |+-|..+|+.+..+|+..+|.+ .+ +.+.--+|.+=+=..||.--.+ T Consensus 1 m~~l~~~~~L~~vK~~lgi~--d---D~lL~~li~~a~~~i~~~l~~~-~i--P~~l~~Iv~evavkryNR~g~EG~~S~ 72 (113) T protein:vir:49 1 MMALDKEKVIQNVSVDLNIN--D---DNLLGILLERIVNHFKAEYGVD-EV--DDNLAFIFEDCLVKRFNRRGAEGARSE 72 (113) T ss_pred CcchhHHHHHHHHHHhcCCC--h---hHHHHHHHHHHHHHHHHHhCcc-cc--chHHHHHHHHHHHHHhcccCcccccee Confidence 6665544 99999999996 3 8899999999999999999963 22 2233334444444444432111 Q ss_pred --------HH------HHHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 74 --------FQ------ENFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 74 --------F~------~Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) |. ..|..+|-...-.... ...+.=. T Consensus 73 SeeG~S~sf~d~~~df~eY~~~l~~~~~~~~~-~~~G~v~ 111 (113) T protein:vir:49 73 SIDGHSMSYYDNENEFDPYDNMLQRLYGTSGQ-AKEGEVL 111 (113) T ss_pred ecCceeeeecccccccchhHHHHHHHHhhcCC-CCCccee Confidence 21 1234444332211100 0000000 No 62 >protein:vir:3615 Length: 110 # NCBI annotation: ORF38 # Family: family:all:372 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112701;genbank:gi:13786569;genbank:GeneID:921067 Probab=46.37 E-value=0.27 Score=23.73 Aligned_cols=86 Identities=21% Similarity=0.222 Sum_probs=44.5 Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhH------------- Q lcl|NC_021539. 5 DEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSF------------- 71 (99) Q Consensus 5 ~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndal------------- 71 (99) =++|+.+|-++-|+ .|+.|..+|+.+...|...+|.+.. +-..+..-.+.+=|=..||.-- T Consensus 1 M~~L~~vK~~lg~~-----~D~lL~~li~~a~~~i~~~~~~~~~-eiP~~l~~iv~evav~ryNR~g~EG~~S~SeeG~S 74 (110) T protein:vir:36 1 MAITDDLKMLLGGS-----LDERLEVIEKRTRDRLLLILGSDIK-EVPPELEYVVLDVSLKRFNRIGQEGMQSYSQEGLS 74 (110) T ss_pred ChhHHHHHhhcCCC-----hhHHHHHHHHHHHHHHHHHhCCChh-hhhhHHHHHHHHHHHHHhccccccccceeecCCce Confidence 24689999999985 4889999999999999999994210 1122222233333323333211 Q ss_pred HHHHH----HHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 72 EYFQE----NFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 72 e~F~~----Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) --|.. .|..+|....-.. . ...+.+ T Consensus 75 ~sf~~~d~~~y~~~l~~y~~~~-~--~~~~~~ 103 (110) T protein:vir:36 75 MTFSESDFDEYADEIESWRKSR-E--TEGDKK 103 (110) T ss_pred eeecccCcchHHHHHHHHHhhh-c--cccCCc Confidence 12433 3333333321111 0 011112 No 63 >protein:vir:3871 Length: 99 # NCBI annotation: putative DNA packaging protein # Family: family:all:316 # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680488;swissprot:trembl:q8ltb9;genbank:gi:22296528;uniprot:Q8LTB9;genbank:GeneID:951686 Probab=42.05 E-value=0.49 Score=22.30 Aligned_cols=82 Identities=21% Similarity=0.311 Sum_probs=47.7 Q ss_pred hhcCCCCCChhhHHHHHHHHHHHHHHHHhhcC---CccCCCCcc----hHHHHHHHHHH--HHHhhhHHHHHHHHHHHHH Q lcl|NC_021539. 13 DYLRITWTDTTEDNRLRKIIERVSARISQLAG---VPFTFEKED----AAKQLLFDGVR--YAYNNSFEYFQENFISEIQ 83 (99) Q Consensus 13 ~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G---~~~d~~~~~----~~keLv~er~R--Y~yndale~F~~Nf~~ei~ 83 (99) =++||. |+.+|+-|+.++.++..+|++-.+ .+-+|-.+. .++-.|+.-+- |.+-.+. -+.++-+|- T Consensus 1 lylRID--~d~DDelL~~~i~aAe~~Ik~AI~~~s~~~~F~en~~~~~rF~~Av~~lv~~~Y~~R~~~---sd~~~~~i~ 75 (99) T protein:vir:38 1 MYLKVD--QTIEDPMIMQLVNDACGEISSAISFGSNPEQFLSNPETRDRFFTALMKQVKEDYDYRGMG---AEVMRFPLQ 75 (99) T ss_pred Ceeecc--CCcchHHHHHHHhHHHHHHHHhhcCCCCccchhccccchhHHHHHHHHHHHHHHhhhccc---ccceeccch Confidence 788997 888999999999999999999883 223344332 55666665543 3322222 445554443 Q ss_pred H----H--HHHHhhc-ccccCCC Q lcl|NC_021539. 84 S----L--QFDVAVN-VNAESQS 99 (99) Q Consensus 84 ~----l--~l~~~~~-e~~~~~s 99 (99) . + ||+..+. ++++.++ T Consensus 76 ~gv~~iI~QLRge~~~~~~~~d~ 98 (99) T protein:vir:38 76 TSTTNIINQLRSELPEEDGDSDA 98 (99) T ss_pred hhHHHHHHHhhcccccccCCCCC Confidence 3 3 3333333 2222222 No 64 >protein:vir:1435 Length: 188 # NCBI annotation: hypothetical protein # Family: family:all:501 # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536364;genbank:gi:17975169;genbank:GeneID:929149 Probab=40.53 E-value=0.04 Score=28.23 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=39.9 Q ss_pred CCCCHH----HHHHHHhhcCCCCCChhhHHHHHH-HHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHHHHH Q lcl|NC_021539. 1 MQVSDE----ILQEIKDYLRITWTDTTEDNRLRK-IIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFEYFQ 75 (99) Q Consensus 1 m~i~~~----lL~efK~r~~Itw~~~~eD~~L~~-~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale~F~ 75 (99) ...++. -|+++|.+|+|+ ++.||.-|.. +|.++.+.+.+.||.++- .+-.++.+++..- +- T Consensus 6 ~~~ppa~epVtLae~K~~lrid--~~~eD~~l~~~li~aA~~~~E~~tgr~l~----~qt~~~~~~~~~~---~~----- 71 (188) T protein:vir:14 6 VEYLDDAEPLTFEEVAFQCRID--DDDERDFVERVVIPGARQAAESKAGAAIR----KARYVEHLSGFPP---AE----- 71 (188) T ss_pred eecCCCCCccCHHHHHHHcCCC--CchhHHHHHHHHHHHHHHHHHHHhCCeee----eeeEEEEecCcCC---Cc----- Confidence 222221 399999999997 6778888854 899999999999996442 1122223332210 00 Q ss_pred HHHHHHHHHHHHHH-----hhcccccCCC Q lcl|NC_021539. 76 ENFISEIQSLQFDV-----AVNVNAESQS 99 (99) Q Consensus 76 ~Nf~~ei~~l~l~~-----~~~e~~~~~s 99 (99) +.|-+.- .+...+.+.. T Consensus 72 -------~~Lp~~Pv~sV~sV~~~d~~g~ 93 (188) T protein:vir:14 72 -------VPLSVGQVISVDSIEIRDASGA 93 (188) T ss_pred -------eEecccCcceeeEEEEEcCCCc Confidence 0010000 1111111110 No 65 >protein:vir:2738 Length: 112 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695111;genbank:gi:23455880;genbank:GeneID:955641 Probab=38.97 E-value=1 Score=20.49 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=49.8 Q ss_pred CCCCH-HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHHH------ Q lcl|NC_021539. 1 MQVSD-EILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFEY------ 73 (99) Q Consensus 1 m~i~~-~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale~------ 73 (99) |++.+ ++|+.+|.++-|+ + |+-|..+|+.+..+|+..+|.+ .+ +.+.--+|.+=+=..||.--.+ T Consensus 1 ~~l~~~~~L~~iK~~lg~~--d---D~lL~~ii~~a~~~i~~~l~~~-~i--P~~l~~Iv~evavkryNR~g~EG~~S~S 72 (112) T protein:vir:27 1 MTLDKDKVIKNVSVDLNTN--D---DALLKILLERVVNHFKSEYGVE-EI--DDKLAFIFEDCVIKRFNRRGAEGAKSES 72 (112) T ss_pred CcchhHHHHHHHHhhcCCC--h---hHHHHHHHHHHHHHHHHhcCcc-cc--chhHHHHHHHHHHHHhcccCccccceee Confidence 88864 6899999999996 3 8899999999999999999963 22 2233334444443344432111 Q ss_pred -------HH------HHHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 74 -------FQ------ENFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 74 -------F~------~Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) |. ..|..+|....-.... .+.+.=. T Consensus 73 eeG~S~sf~d~~~df~~Y~~~l~~~~~~~~~-~~~G~v~ 110 (112) T protein:vir:27 73 VDGHSMSYYDNENEFKPYDDMLQRLYGTSGQ-AKEGEVL 110 (112) T ss_pred cCceeeeecccccchhhhHHHHHHHHhhcCC-CCCceee Confidence 21 1244444433211100 0000000 No 66 >protein:vir:80320 Length: 188 # NCBI annotation: gp8, conserved hypothetical protein # Family: family:all:501 # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111087;genbank:gi:134288682;genbank:GeneID:4960567 Probab=37.63 E-value=0.08 Score=26.60 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=39.9 Q ss_pred CCC--CHH----HHHHHHhhcCCCCCChhhHHHHHH-HHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhHHH Q lcl|NC_021539. 1 MQV--SDE----ILQEIKDYLRITWTDTTEDNRLRK-IIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSFEY 73 (99) Q Consensus 1 m~i--~~~----lL~efK~r~~Itw~~~~eD~~L~~-~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndale~ 73 (99) |-+ ++. -|+++|.+|+|+ |+.||.-|.. +|.++.+.+.+.||..+- .+-.++.++.+.. +.+.. T Consensus 4 ~~~~~ppa~ePVtL~e~K~hLRid--~~~eD~~l~~~lI~aA~~~~E~~~gr~l~----~qt~~~~~~~~~~---~~i~L 74 (188) T protein:vir:80 4 VLVEYLDDAEPLTFEEVAFQCRID--DDDERDFVERIVIPGARQAAESKSGAAIR----KARYVERLSGFPL---AEISL 74 (188) T ss_pred eeeccCCCCcccCHHHHHHHcCCC--CchhhHHHHHHHHHHHHHHHHHHhCCeee----eeeEEEEecCCCC---CceEe Confidence 222 211 299999999997 6678888865 789999999999995442 1122333332210 00000 Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 74 FQENFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 74 F~~Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) - ...+.+. ..+...+.+.. T Consensus 75 p----~~PV~sV---~sV~~~d~~G~ 93 (188) T protein:vir:80 75 S----VGQVIRV---DSIEIRDASGA 93 (188) T ss_pred c----cccccee---eEEEEEcCCCc Confidence 0 0000000 01111111111 No 67 >protein:vir:741 Length: 110 # NCBI annotation: unknown # Family: family:all:372 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108718;genbank:gi:13487840;genbank:GeneID:920873 Probab=36.01 E-value=1.2 Score=20.16 Aligned_cols=89 Identities=20% Similarity=0.153 Sum_probs=46.7 Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhhH------------- Q lcl|NC_021539. 5 DEILQEIKDYLRITWTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNSF------------- 71 (99) Q Consensus 5 ~~lL~efK~r~~Itw~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~yndal------------- 71 (99) =++|+.+|-++-|+ .|+-|+-+|+.+..+|+..+|.... +-+.+..-.+.+=+=..||.-- T Consensus 1 M~~L~~vK~~lgi~-----~D~lL~~li~~a~~~i~~~l~~~~~-~iP~~l~~iv~evav~ryNR~g~EG~~S~SeeG~S 74 (110) T protein:vir:74 1 MAITYEIKKLLGGS-----SDERLEIIEKRTRERLLLILGSDLK-EVPPELEYVVLDVSLKRFNRIGQEGMQSYSQEGLS 74 (110) T ss_pred ChHHHHHHHHcCCC-----hhHHHHHHHHHHHHHHHHHhCCChh-hhhHHHHHHHHHHHHHHhcccCccccceeecCCee Confidence 24699999999996 4889999999999999999994211 1122222333333333333221 Q ss_pred HHHHHHHHHHHHHHHHHHhhc-ccccCCC Q lcl|NC_021539. 72 EYFQENFISEIQSLQFDVAVN-VNAESQS 99 (99) Q Consensus 72 e~F~~Nf~~ei~~l~l~~~~~-e~~~~~s 99 (99) --|.+|.-.++.+---...-. ....+-+ T Consensus 75 ~sf~~~d~~~y~~~l~~y~~~~~~~~~~~ 103 (110) T protein:vir:74 75 MTFSESDFDEYADEIESRRKSKETEGDKK 103 (110) T ss_pred eeecccchhhHHHHHHHHHhhccccccCc Confidence 124444433333322221111 1111112 No 68 >protein:vir:96488 Length: 113 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238494;genbank:gi:66391770;genbank:GeneID:5176910 Probab=35.04 E-value=1.3 Score=20.04 Aligned_cols=90 Identities=20% Similarity=0.186 Sum_probs=44.6 Q ss_pred CCCCHHHHHHHHhhcCCC-CCChhhHHHHHHHHHHHHHHHHhhcCCccCCCCcchHHHHHHHHHHHHHhhh--------- Q lcl|NC_021539. 1 MQVSDEILQEIKDYLRIT-WTDTTEDNRLRKIIERVSARISQLAGVPFTFEKEDAAKQLLFDGVRYAYNNS--------- 70 (99) Q Consensus 1 m~i~~~lL~efK~r~~It-w~~~~eD~~L~~~l~~s~~~l~~~~G~~~d~~~~~~~keLv~er~RY~ynda--------- 70 (99) |. .|+.+|-.+.|. |.+...|+-|..+|+.+..+|+..+|.+ .+ +...--+|.+=+=-.||.- T Consensus 1 M~----~L~~~K~l~~ik~~~~~~~D~lL~~ii~~a~~~i~~~l~~~-~i--P~~L~~Iv~evavkryNR~g~EG~~S~S 73 (113) T protein:vir:96 1 MM----ALDKDKVIKNVSVDLNTDDDVLLKILLERVVNHFKSEYGVE-EI--DDKLAFIFEDCVIKRFNRRGAEGAKSES 73 (113) T ss_pred Cc----hhHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHhccc-cc--chhHHHHHHHHHHHHhcCCCccccceec Confidence 43 678888888885 2244568889999999999999999963 22 2222333333333333321 Q ss_pred -----------HHHHHHHHHHHHHHHHHHHhhcccccCCC Q lcl|NC_021539. 71 -----------FEYFQENFISEIQSLQFDVAVNVNAESQS 99 (99) Q Consensus 71 -----------le~F~~Nf~~ei~~l~l~~~~~e~~~~~s 99 (99) ...| ..|..+|....-... +...+.=. T Consensus 74 ~eG~S~sf~d~~~df-~eY~~~l~~~~~~~~-~~~~G~v~ 111 (113) T protein:vir:96 74 VDGHSMSYYDNENEF-KPYDDMLQRLYGTSG-QSKEGEVL 111 (113) T ss_pred cCceeeeeccccccc-chhHHHHHHHHhhcC-CCCCceee Confidence 1111 123444433311000 00000000 No 69 >protein:vir:81069 Length: 115 # NCBI annotation: p10 # Family: family:all:363 # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285680;genbank:gi:148727188;genbank:GeneID:5247114 Probab=29.14 E-value=1.7 Score=19.34 Aligned_cols=88 Identities=9% Similarity=0.051 Sum_probs=42.5 Q ss_pred CCCHHHHHHHHhhcCCCCCCh-hhHHHHHHHHHHHHHHHHhhcCCccCCC---------------------CcchHHHHH Q lcl|NC_021539. 2 QVSDEILQEIKDYLRITWTDT-TEDNRLRKIIERVSARISQLAGVPFTFE---------------------KEDAAKQLL 59 (99) Q Consensus 2 ~i~~~lL~efK~r~~Itw~~~-~eD~~L~~~l~~s~~~l~~~~G~~~d~~---------------------~~~~~keLv 59 (99) =|| |+++|..+||.-+++ .+|.-|...|.++..++.+.+|-.+--. +.-..-=|+ T Consensus 1 ivt---Lee~K~HlRid~dd~deDD~li~~~i~AA~~~v~~~l~r~l~~~~~~~~~~~~~~~~~~~~~~~p~~i~~AiLl 77 (115) T protein:vir:81 1 MIT---LAMVQRHLQAELYEDDERDYVMQQLLPAARESAELFINRKLYDTQADMLADQAAGVDPAGQLLITRTVEQAILL 77 (115) T ss_pred CCC---HHHHHHHcCCCCCCCccchHHHHHHHHHHHHHHHHHhCCccccccccccccccccCCCCcccccCHHHHHHHHH Confidence 233 999999999974333 3477788999999999999888543110 000112233 Q ss_pred HHHHHHHHhhhHHHHHHH-----HHHHHHHHHHHHhhc Q lcl|NC_021539. 60 FDGVRYAYNNSFEYFQEN-----FISEIQSLQFDVAVN 92 (99) Q Consensus 60 ~er~RY~yndale~F~~N-----f~~ei~~l~l~~~~~ 92 (99) +=--.|+.-.+.-....+ +..-|.-...--+|. T Consensus 78 lvg~~Y~NRE~v~~~~~~elP~~~~~LL~pyR~~~g~~ 115 (115) T protein:vir:81 78 TLGEWYSSREQVWTKGAGLVTSSAQNLLHPYRKFAGVR 115 (115) T ss_pred HHHHHHhccchhcchhhhhcCHHHHHHHHHHHhhcCCC Confidence 333333333333222100 111111111111111 Done!