Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PEi2 | Genbank acc : NC_021342

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 71

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	13	lcl\|NC_021342.1_cdsid_YP_008060416.1	HHsearch (proba=100.00%)
Portal	4	lcl\|NC_021342.1_cdsid_YP_008060407.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_021342.1_cdsid_YP_008060405.1	Blast (e-value=1e-116)
MTP	NOT FOUND
Sheath	26	lcl\|NC_021342.1_cdsid_YP_008060429.1	HHsearch (proba=100.00%)
Ad1	22	lcl\|NC_021342.1_cdsid_YP_008060425.1	HHsearch (proba=100.00%)
Hc1	24	lcl\|NC_021342.1_cdsid_YP_008060427.1	HHsearch (proba=98.34%)
Ne1	23	lcl\|NC_021342.1_cdsid_YP_008060426.1	HHsearch (proba=100.00%)
Tc1	25	lcl\|NC_021342.1_cdsid_YP_008060428.1	HHsearch (proba=99.67%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104342 protein:vir:107687 protein:vir:103285	RTP T1 JK06	22 % 21 % 20 %
Portal	protein:vir:5249 protein:vir:107662 protein:vir:80040	Aaphi23 T1 B054	28 % 21 % 21 %
TermL	protein:vir:96067 protein:vir:99572 protein:vir:96782	F8 BcepF1 phiHSIC	48 % 46 % 24 %
Sheath	protein:vir:5260 protein:vir:95263 protein:vir:94073	Aaphi23 Felix 01 OP2	25 % 21 % 18 %
Ad1	protein:vir:5256 protein:vir:107756 protein:vir:104344	Aaphi23 BcepB1A RTP	29 % 19 % 20 %
Hc1	protein:vir:95261 protein:vir:5258 protein:vir:101560	Felix 01 Aaphi23 Bcep43	21 % 17 % 20 %
Ne1	protein:vir:5257 protein:vir:96105 protein:vir:99546	Aaphi23 F8 BcepF1	35 % 28 % 25 %
Tc1	protein:vir:80105 protein:vir:5259 protein:vir:78612	B054 Aaphi23 BcepNY3	15 % 16 % 16 %