Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 77 lcl|NC_021334.1_cdsid_YP_008059978.1 HHsearch (proba=100.00%)
Portal 80 lcl|NC_021334.1_cdsid_YP_008059981.1 HHsearch (proba=100.00%)
TermL 81 lcl|NC_021334.1_cdsid_YP_008059982.1 Blast (e-value=0)
MTP 73 lcl|NC_021334.1_cdsid_YP_008059974.1 Blast (e-value=1e-159)
Sheath NOT FOUND
Ad1 76 lcl|NC_021334.1_cdsid_YP_008059977.1 HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 75 lcl|NC_021334.1_cdsid_YP_008059976.1 HHsearch (proba=100.00%)
Tc1 74 lcl|NC_021334.1_cdsid_YP_008059975.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:2504
protein:vir:105905
protein:vir:94142
TM4
phiETA3
96
72 %
23 %
23 %
Portal protein:vir:2500
protein:vir:98444
protein:vir:99072
TM4
VWB
Wildcat
62 %
25 %
24 %
TermL protein:vir:8183
protein:vir:2499
protein:vir:99915
Che9d
TM4
Halo
77 %
33 %
32 %
MTP protein:vir:102610
protein:vir:105827
protein:vir:7995
Llij
PMC
Che8
99 %
99 %
99 %
Ad1 protein:vir:2505
protein:vir:1640
protein:vir:94761
TM4
r1t
phi LC3
44 %
27 %
26 %
Ne1 protein:vir:102608
protein:vir:105825
protein:vir:7993
Llij
PMC
Che8
97 %
97 %
97 %
Tc1 protein:vir:7994
protein:vir:102609
protein:vir:105826
Che8
Llij
PMC
97 %
96 %
96 %