Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : vB_CpeS-CP51 | Genbank acc : NC_021325

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 50

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|NC_021325.1_cdsid_YP_008058932.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_021325.1_cdsid_YP_008058926.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_021325.1_cdsid_YP_008058925.1	Blast (e-value=1e-16)
MTP	15	lcl\|NC_021325.1_cdsid_YP_008058938.1	Blast (e-value=2e-08)
Sheath	NOT FOUND
Ad1	11	lcl\|NC_021325.1_cdsid_YP_008058934.1	HHsearch (proba=100.00%)
Hc1	12	lcl\|NC_021325.1_cdsid_YP_008058935.1	HHsearch (proba=96.64%)
Ne1	13	lcl\|NC_021325.1_cdsid_YP_008058936.1	HHsearch (proba=100.00%)
Tc1	14	lcl\|NC_021325.1_cdsid_YP_008058937.1	HHsearch (proba=80.64%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79008 protein:vir:105464 protein:vir:78920	phiC2 KC5a A006	39 % 35 % 33 %
Portal	protein:vir:1587 protein:vir:80959 protein:vir:38	phig1e A500 A118	18 % 18 % 18 %
TermL	protein:vir:78869 protein:vir:1235 protein:vir:94806	A006 phi ETA 29	24 % 23 % 23 %
MTP	protein:vir:78892 protein:vir:1579 protein:vir:79709	A006 phig1e LL-H	26 % 25 % 19 %
Ad1	protein:vir:43 protein:vir:80967 protein:vir:98900	A118 A500 BCJA1c	28 % 27 % 27 %
Hc1	protein:vir:98924 protein:vir:44 protein:vir:80934	BCJA1c A118 A500	15 % 15 % 13 %
Ne1	protein:vir:80970 protein:vir:45 protein:vir:78894	A500 A118 A006	24 % 23 % 22 %
Tc1	protein:vir:1643 protein:vir:94768 protein:vir:1438	r1t phi LC3 phiE125	10 % 9 % 13 %