Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : TJE1 | Genbank acc : NC_019930

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 66

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	27	lcl\|NC_019930.1_cdsid_YP_007237939.1	HHsearch (proba=97.93%)
Portal	22	lcl\|NC_019930.1_cdsid_YP_007237934.1	HHsearch (proba=99.96%)
TermL	20	lcl\|NC_019930.1_cdsid_YP_007237932.1	Blast (e-value=7e-28)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	29	lcl\|NC_019930.1_cdsid_YP_007237941.1	HHsearch (proba=94.74%)
Hc1	NOT FOUND
Ne1	30	lcl\|NC_019930.1_cdsid_YP_007237942.1	HHsearch (proba=100.00%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104342 protein:vir:79642 protein:vir:80068	RTP TLS B054	16 % 15 % 14 %
Portal	protein:vir:94666	mu1/6	19 %
TermL	protein:vir:78394 protein:vir:94991 protein:vir:94525	SETP3 KS7 phiJL-1	26 % 26 % 16 %
Ad1	protein:vir:5256 protein:vir:96108 protein:vir:99570	Aaphi23 F8 BcepF1	25 % 19 % 20 %
Ne1	protein:vir:5257 protein:vir:80037 protein:vir:96105	Aaphi23 B054 F8	29 % 23 % 23 %