Query lcl|NC_019930.1_cdsid_YP_007237941.1 [gene=G185_gp29] [protein=hypothetical protein] [protein_id=YP_007237941.1] [location=22971..23381] Match_columns 136 No_of_seqs 1 out of 4 Neff 1.0 Searched_HMMs 1612 Date Thu Nov 7 17:36:10 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_29 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_29_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:96108 Length: 155 94.7 0.00033 2E-07 39.7 6.6 129 1-136 1-142 (155) 2 protein:vir:5256 Length: 119 # 94.3 0.00034 2.1E-07 39.6 5.8 113 1-136 1-117 (119) 3 protein:vir:99570 Length: 153 93.9 0.00065 4E-07 38.1 6.5 123 1-130 1-153 (153) 4 protein:vir:101559 Length: 158 93.6 0.0009 5.6E-07 37.3 6.7 125 1-136 1-158 (158) 5 protein:vir:3639 Length: 158 # 93.6 0.0009 5.6E-07 37.3 6.7 125 1-136 1-158 (158) 6 protein:vir:107756 Length: 147 93.2 0.00071 4.4E-07 37.9 5.6 125 1-136 1-133 (147) 7 protein:vir:94064 Length: 167 93.1 0.0012 7.4E-07 36.6 6.6 125 1-136 1-138 (167) 8 protein:vir:78595 Length: 158 91.1 0.0034 2.1E-06 34.1 6.7 126 1-136 1-158 (158) 9 protein:vir:106739 Length: 158 91.1 0.0034 2.1E-06 34.1 6.7 126 1-136 1-158 (158) 10 protein:vir:107702 Length: 136 16.7 3.6 0.0022 17.5 5.8 118 1-136 1-132 (136) No 1 >protein:vir:96108 Length: 155 # NCBI annotation: hypothetical protein ORF025 # Family: family:all:664 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294442;genbank:gi:149408339;genbank:GeneID:5237227 Probab=94.74 E-value=0.00033 Score=39.69 Aligned_cols=129 Identities=19% Similarity=0.158 Sum_probs=66.6 Q ss_pred CCcc--chh--hhhHHh--hhhhHHHhhHHHHhhhhhhheeecchhhhcccccccccch-hhhhhHHHHhhhhcccchhH Q lcl|NC_019930. 1 MTSY--QDF--EFAQFF--VGVTAQQIDKALVRVQAQWYGLLNGDLWASLPQPVQAGKI-DQMSDLLVAWYLAENYPDSV 73 (136) Q Consensus 1 mtsy--qdf--efaqff--vgvtaqqidkalvrvqaqwygllngdlwaslpqpvqagki-dqmsdllvawylaenypdsv 73 (136) |--+ ++| .|-+|- +-+...+|.-.+-..+. ++|..-+. -|+.-||. ++.-.|++|-+|.=+.-++- T Consensus 1 ~v~fd~~~FR~~fPeFad~~~~Pd~~i~~~l~~A~~----~l~~~~~~---s~~~~g~~~~~~l~Ll~AH~l~L~~~~~~ 73 (155) T protein:vir:96 1 MVIFDEQKFRTLFPEFADPASYPAVRLQLYFDIACE----FISDRDSP---YRILNGKALEACLYLLTAHLLSLSTMQVQ 73 (155) T ss_pred CcccCHHHHHHhCccccCcccCCHHHHHHHHHHHHH----hhcCCCcc---ccccChHHHHHHHHHHHHHHHHHHHHhhh Confidence 2222 222 122221 12334444443332221 12211111 14455543 56678999999876554433 Q ss_pred hhhh----ccCc--cccccccccceeEEeeehhhhhhhhhhhhhhhhhHHHHHHHhcCcceEeeccCCC Q lcl|NC_019930. 74 VNAI----SNGA--LPLSSKSVDGVSVTYLPLEDVQGDMKMLMTNQWGQQALQMFQSAPERFLLFPGAT 136 (136) Q Consensus 74 vnai----snga--lplssksvdgvsvtylpledvqgdmkmlmtnqwgqqalqmfqsaperfllfpgat 136 (136) =+++ +||. -+++|||++.|||.|-...--.++-..+..-+|||+-++|..-.--=-...||.- T Consensus 74 gaa~~g~~~~g~~~G~vsSas~G~VSVSy~~~~~~~~~~~w~~~T~YGq~f~~l~~~~~~Gg~~vgG~p 142 (155) T protein:vir:96 74 GAAGGGVTAGGTQGGFITSATVGEVSVAKLAPPAKNGWQWWLSGTPYGQELWALLSVKAVGGFYIGGLP 142 (155) T ss_pred hccccccccccccccceeeceecceeeeeecCCCCCchhHHhhcCHHHHHHHHHHHHhcccccccCCCC Confidence 3333 2333 3489999999999997554444566678899999998887642211011123332 No 2 >protein:vir:5256 Length: 119 # NCBI annotation: hypothetical protein # Family: family:all:664 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852761;genbank:gi:31544036;uniprot:Q7Y5T9;genbank:GeneID:2753553 Probab=94.34 E-value=0.00034 Score=39.60 Aligned_cols=113 Identities=25% Similarity=0.284 Sum_probs=68.8 Q ss_pred CCccchhh--hhHHhhhhhHHHhhHHHHhhhhhhheeecchhhhcccccccccchhhhhhHHHHhhhhcccchhHhhhhc Q lcl|NC_019930. 1 MTSYQDFE--FAQFFVGVTAQQIDKALVRVQAQWYGLLNGDLWASLPQPVQAGKIDQMSDLLVAWYLAENYPDSVVNAIS 78 (136) Q Consensus 1 mtsyqdfe--faqffvgvtaqqidkalvrvqaqwygllngdlwaslpqpvqagkidqmsdllvawylaenypdsvvnais 78 (136) |++-.+|. |-+| ..|+..+|+-.+.-... +++.+.|.. .-++.-.|++|-+|.-.-.... . T Consensus 1 m~t~~~Fr~~~PeF-~~~pd~~i~~~l~~A~~----~l~~~~~g~--------~~~~~~~L~~AH~l~l~~~~~~----~ 63 (119) T protein:vir:52 1 MPLTEDFLLRYTEF-GKTDAKRIGLFLSDAQA----EVSKVQWGK--------LYDRGVMALTAHLLKLSADAEI----S 63 (119) T ss_pred CCcHHHHHHhhhhc-cCCCHHHHHHHHHHHHH----hhCCcCCch--------HHHHHHHHHHHHHHHhhhhhhc----c Confidence 99888884 3333 34777777766653332 234445532 1244556888888754322222 2 Q ss_pred cCc--cccccccccceeEEeeehhhhhhhhhhhhhhhhhHHHHHHHhcCcceEeeccCCC Q lcl|NC_019930. 79 NGA--LPLSSKSVDGVSVTYLPLEDVQGDMKMLMTNQWGQQALQMFQSAPERFLLFPGAT 136 (136) Q Consensus 79 nga--lplssksvdgvsvtylpledvqgdmkmlmtnqwgqqalqmfqsaperfllfpgat 136 (136) ||. -+.+||+++.|||.|-...-..++-..+..-.|||+-+++..-. ..|.- T Consensus 64 ~g~~~g~v~S~s~G~vSvS~~~~~~~~~~~~w~~~T~YG~~y~~L~r~~------g~Gg~ 117 (119) T protein:vir:52 64 GGAANRNLASESAGELSVSYTAPISANGSDDFYQLTAYGQEYLRLRRLI------GVGVM 117 (119) T ss_pred ccccccceeeeeecceeeeeeccccCCcchhhhhcCHHHHHHHHHHHHh------cCCCc Confidence 332 34799999999999965444445555588899999999886532 12222 No 3 >protein:vir:99570 Length: 153 # NCBI annotation: hypothetical protein # Family: family:all:664 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039799;genbank:gi:126011049;genbank:GeneID:4818265 Probab=93.88 E-value=0.00065 Score=38.06 Aligned_cols=123 Identities=20% Similarity=0.284 Sum_probs=62.4 Q ss_pred CC----ccchh--hhhHHh--hhhhHHHhhHHHHhhhhhhheeecchhhhcccccccccc-hhhhhhHHHHhhhhcc--c Q lcl|NC_019930. 1 MT----SYQDF--EFAQFF--VGVTAQQIDKALVRVQAQWYGLLNGDLWASLPQPVQAGK-IDQMSDLLVAWYLAEN--Y 69 (136) Q Consensus 1 mt----syqdf--efaqff--vgvtaqqidkalvrvqaqwygllngdlwaslpqpvqagk-idqmsdllvawylaen--y 69 (136) |. ..++| .|-+|- +-+...+|+-.+-.... ++|..-| +-++.-|| .++.-.|++|-+|+=+ - T Consensus 1 m~~~~fd~~~Fr~~fPeFad~~~~Pd~~i~~~l~~A~~----~l~~~~~---~~~~~~g~~~~~~l~Ll~AH~l~L~~~~ 73 (153) T protein:vir:99 1 MADPVYNDGLFRIMYPEFADQEKYPPEVIEIYYDTATL----FITGSMF---PCAALSGKQLVGALNMLTAHLMSLSMQR 73 (153) T ss_pred CCcccCChHHHHHhcccccCccccCHHHHHHHHHHHHH----hhcCccc---cccccChHHHHHHHHHHHHHHHHHHhhh Confidence 22 12222 122221 12233444333322211 1222212 11222233 3567789999997642 2 Q ss_pred chhHhhhhccCccccccccccceeEEeeehhhhhhhhhhhhhhhhhHHHHHHHh----------cCcce---------Ee Q lcl|NC_019930. 70 PDSVVNAISNGALPLSSKSVDGVSVTYLPLEDVQGDMKMLMTNQWGQQALQMFQ----------SAPER---------FL 130 (136) Q Consensus 70 pdsvvnaisngalplssksvdgvsvtylpledvqgdmkmlmtnqwgqqalqmfq----------saper---------fl 130 (136) .++..++=+...=..+||+++.|||.|-..---.++-..+..-+||||-++|.. ..||| || T Consensus 74 ~~~~~~a~~~~~G~vsSas~G~VSVSy~~~~~~~~~~~w~~~T~YGq~fw~l~~~~~~Gg~v~gg~pe~~~~r~vgg~f~ 153 (153) T protein:vir:99 74 SQTALGATNDQGGYTLSATIGEVSVSKMAPPAKDGWEFWLAQTPYGQALWALLKMLSVGGFAIGGLPERTGFRKVGGVFL 153 (153) T ss_pred hcccccCCCccccceeeeeecceeeeeecCCCCCchhHhhhcCHHHHHHHHHHHHhcccccccCCCCccccccccCcccC Confidence 333333222223458999999999999644333455567889999999888754 23554 22 No 4 >protein:vir:101559 Length: 158 # NCBI annotation: gp08 # Family: family:all:664 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958112;genbank:gi:41057658;genbank:GeneID:2716816 Probab=93.57 E-value=0.0009 Score=37.28 Aligned_cols=125 Identities=21% Similarity=0.303 Sum_probs=66.8 Q ss_pred CC--------ccchh--hhhHHhhhhhHHHhhHHHHhhhhhhheeecchhhhcccccccccch-hhhhhHHHHhhhhccc Q lcl|NC_019930. 1 MT--------SYQDF--EFAQFFVGVTAQQIDKALVRVQAQWYGLLNGDLWASLPQPVQAGKI-DQMSDLLVAWYLAENY 69 (136) Q Consensus 1 mt--------syqdf--efaqffvgvtaqqidkalvrvqaqwygllngdlwaslpqpvqagki-dqmsdllvawylaeny 69 (136) |. ...+| .|-+| .-+...+|+-.+--.+. =++|..-| .+++-|+. ++.-.|++|-+|.= + T Consensus 1 ~~~~~~~v~Fd~a~FR~~fPeF-a~~pd~~i~~~~~~A~~---~~l~n~~~----s~~~~~~~r~~ll~LltAHll~L-~ 71 (158) T protein:vir:10 1 MSTPPYRITFDPAGFIAEYPEF-ATVPTPRLQAMFNQAQA---ALLDNTGG----SPVTDDNVLRELFNMLVAHLLTL-F 71 (158) T ss_pred CCCCCceEEcChHHHHHhCccc-ccCCHHHHHHHHHhhhh---eeeCCccc----ccccChHHHHHHHHHHHHHHHHH-h Confidence 22 12222 12222 22333333333222111 14454444 34555554 67788999998773 3 Q ss_pred chhHhhhhccCcc--ccccccccceeEEe-eehhhhhhhhhhhhhhhhhHHHHHHHh----------cCcce-------- Q lcl|NC_019930. 70 PDSVVNAISNGAL--PLSSKSVDGVSVTY-LPLEDVQGDMKMLMTNQWGQQALQMFQ----------SAPER-------- 128 (136) Q Consensus 70 pdsvvnaisngal--plssksvdgvsvty-lpledvqgdmkmlmtnqwgqqalqmfq----------saper-------- 128 (136) ..+... +++++ .++|||++.|||.| .+.--..++---+..-++|||-++|.. ..||| T Consensus 72 ~~~~~g--~~~g~vG~vsSas~G~VSVS~d~~~~t~~~~~~W~~~T~YG~~fw~L~~~~~~Gg~v~Gg~pe~~~~r~~g~ 149 (158) T protein:vir:10 72 SAAPTS--ANSRPPGRLSSATEGTVSSSFEYALPQGSAIAPWYNQTQYGAMFWMATAHYRSARYMVSGGSGIGTARAYGQ 149 (158) T ss_pred hhhhcc--cccCcccceeeeeeCceeEEeeeccccCCchhhhhhcCHHHHHHHHHHHhhCccccccccCCcccceeccCc Confidence 333322 23332 68999999999999 433211222335678899999888754 34665 Q ss_pred -EeeccCCC Q lcl|NC_019930. 129 -FLLFPGAT 136 (136) Q Consensus 129 -fllfpgat 136 (136) |.-.||.. T Consensus 150 ~~~~~~~~~ 158 (158) T protein:vir:10 150 PTIQIPGGV 158 (158) T ss_pred eeeeeCCCC Confidence 55666666 No 5 >protein:vir:3639 Length: 158 # NCBI annotation: gp08 # Family: family:all:664 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705634;genbank:gi:23752319;genbank:GeneID:955737 Probab=93.57 E-value=0.0009 Score=37.28 Aligned_cols=125 Identities=21% Similarity=0.303 Sum_probs=66.8 Q ss_pred CC--------ccchh--hhhHHhhhhhHHHhhHHHHhhhhhhheeecchhhhcccccccccch-hhhhhHHHHhhhhccc Q lcl|NC_019930. 1 MT--------SYQDF--EFAQFFVGVTAQQIDKALVRVQAQWYGLLNGDLWASLPQPVQAGKI-DQMSDLLVAWYLAENY 69 (136) Q Consensus 1 mt--------syqdf--efaqffvgvtaqqidkalvrvqaqwygllngdlwaslpqpvqagki-dqmsdllvawylaeny 69 (136) |. ...+| .|-+| .-+...+|+-.+--.+. =++|..-| .+++-|+. ++.-.|++|-+|.= + T Consensus 1 ~~~~~~~v~Fd~a~FR~~fPeF-a~~pd~~i~~~~~~A~~---~~l~n~~~----s~~~~~~~r~~ll~LltAHll~L-~ 71 (158) T protein:vir:36 1 MSTPPYRITFDPAGFIAEYPEF-ATVPTPRLQAMFNQAQA---ALLDNTGG----SPVTDDNVLRELFNMLVAHLLTL-F 71 (158) T ss_pred CCCCCceEEcChHHHHHhCccc-ccCCHHHHHHHHHhhhh---eeeCCccc----ccccChHHHHHHHHHHHHHHHHH-h Confidence 22 12222 12222 22333333333222111 14454444 34555554 67788999998773 3 Q ss_pred chhHhhhhccCcc--ccccccccceeEEe-eehhhhhhhhhhhhhhhhhHHHHHHHh----------cCcce-------- Q lcl|NC_019930. 70 PDSVVNAISNGAL--PLSSKSVDGVSVTY-LPLEDVQGDMKMLMTNQWGQQALQMFQ----------SAPER-------- 128 (136) Q Consensus 70 pdsvvnaisngal--plssksvdgvsvty-lpledvqgdmkmlmtnqwgqqalqmfq----------saper-------- 128 (136) ..+... +++++ .++|||++.|||.| .+.--..++---+..-++|||-++|.. ..||| T Consensus 72 ~~~~~g--~~~g~vG~vsSas~G~VSVS~d~~~~t~~~~~~W~~~T~YG~~fw~L~~~~~~Gg~v~Gg~pe~~~~r~~g~ 149 (158) T protein:vir:36 72 SAAPTS--ANSRPPGRLSSATEGTVSSSFEYALPQGSAIAPWYNQTQYGAMFWMATAHYRSARYMVSGGSGIGTARAYGQ 149 (158) T ss_pred hhhhcc--cccCcccceeeeeeCceeEEeeeccccCCchhhhhhcCHHHHHHHHHHHhhCccccccccCCcccceeccCc Confidence 333322 23332 68999999999999 433211222335678899999888754 34665 Q ss_pred -EeeccCCC Q lcl|NC_019930. 129 -FLLFPGAT 136 (136) Q Consensus 129 -fllfpgat 136 (136) |.-.||.. T Consensus 150 ~~~~~~~~~ 158 (158) T protein:vir:36 150 PTIQIPGGV 158 (158) T ss_pred eeeeeCCCC Confidence 55666666 No 6 >protein:vir:107756 Length: 147 # NCBI annotation: gp21 # Family: family:all:664 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024869;genbank:gi:48697511;genbank:GeneID:2948377 Probab=93.24 E-value=0.00071 Score=37.86 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=68.9 Q ss_pred CCc---cchhh--hhHHh--hhhhHHHhhHHHHhhhhhhheeecchhhhcccccccccc-hhhhhhHHHHhhhhcccchh Q lcl|NC_019930. 1 MTS---YQDFE--FAQFF--VGVTAQQIDKALVRVQAQWYGLLNGDLWASLPQPVQAGK-IDQMSDLLVAWYLAENYPDS 72 (136) Q Consensus 1 mts---yqdfe--faqff--vgvtaqqidkalvrvqaqwygllngdlwaslpqpvqagk-idqmsdllvawylaenypds 72 (136) |.- .++|. |-+|- +-+...+|+-.+...+. ++|..-|. +++.|+ -++.-.|++|-+|+-+...+ T Consensus 1 m~v~fd~~~Fr~~fPeFad~~~~pd~~i~~~l~~A~~----~l~~~~~~----~~~~g~~~~~~l~Ll~AHll~l~~~~~ 72 (147) T protein:vir:10 1 MDHTLDITKFRALFPEFNNDVKYPDALLEQWYAVAGE----YLGLTDYA----CGLNGNTLDLALMQLTAHLMKSATILS 72 (147) T ss_pred CceecCHHHHHHhcccccCCccCCHHHHHHHHHHHHH----hhccccCC----cccChhhHHHHHHHHHHHHHHHHHhhc Confidence 432 23332 23332 22344555554443322 45555554 345444 46677899999987654322 Q ss_pred HhhhhccCccccccccccceeEEeeehhhhhhhhhhhhhhhhhHHHHHHHhcCcceEeeccCCC Q lcl|NC_019930. 73 VVNAISNGALPLSSKSVDGVSVTYLPLEDVQGDMKMLMTNQWGQQALQMFQSAPERFLLFPGAT 136 (136) Q Consensus 73 vvnaisngalplssksvdgvsvtylpledvqgdmkmlmtnqwgqqalqmfqsaperfllfpgat 136 (136) --+. ..| .++||+++.|||.|-...-..++-..+..-.|||+-+++....--=-...||.- T Consensus 73 ~g~g-~~G--~v~Sas~G~VSVSy~~~~~~~~~~~w~~~T~YGq~y~~l~~~~~~Gg~vvgG~p 133 (147) T protein:vir:10 73 SNKG-APM--VMTSATIDKVSISTLAPPIKNGWQYWLSTTPYGQMLWALLSMRSSGGFVYGGSP 133 (147) T ss_pred cCCC-ccc--ceeeeeecceeeeeecCCCCCcchhhhhcCHHHHHHHHHHHhhCccceecCCCC Confidence 1111 112 368999999999996443334444568889999999888653221112335554 No 7 >protein:vir:94064 Length: 167 # NCBI annotation: hypothetical protein # Family: family:all:664 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453623;genbank:gi:84662659;genbank:GeneID:5142574 Probab=93.08 E-value=0.0012 Score=36.60 Aligned_cols=125 Identities=18% Similarity=0.154 Sum_probs=66.5 Q ss_pred CC----ccchh--hhhHHhhhhhHHHhhHHHHhhhhhhheeecchhhhcccccccccch-hhhhhHHHHhhhhcccchhH Q lcl|NC_019930. 1 MT----SYQDF--EFAQFFVGVTAQQIDKALVRVQAQWYGLLNGDLWASLPQPVQAGKI-DQMSDLLVAWYLAENYPDSV 73 (136) Q Consensus 1 mt----syqdf--efaqffvgvtaqqidkalvrvqaqwygllngdlwaslpqpvqagki-dqmsdllvawylaenypdsv 73 (136) |. ..++| .|-+| .-+...+|+-.+-....- ++|.+-| .+++-+|. ++.-.|++|-+|+=+ +- T Consensus 1 M~~~~Fd~~~FR~~fPeF-a~~Pd~~i~~~l~~A~~~---~l~~~~~----s~~~~~~~~~~~l~LltAHll~L~---~~ 69 (167) T protein:vir:94 1 MAVVVFDPTAFKLVYPEF-VAVPDARLTALFNTVGYT---ILDNTDA----SVIVDPLRRAPLLDLLVAHMLALF---GY 69 (167) T ss_pred CCcccCChHHHHHhchhc-ccCCHHHHHHHHHHHHHh---hcCCCCc----ccccchhhHHHHHHHHHHHHHHHh---hh Confidence 32 12222 12222 224555554444333221 2332222 23444444 355589999998653 11 Q ss_pred hhhh----ccCccc--cccccccceeEEeeehhhhhhhhhhhhhhhhhHHHHHHHhcCcceEeeccCCC Q lcl|NC_019930. 74 VNAI----SNGALP--LSSKSVDGVSVTYLPLEDVQGDMKMLMTNQWGQQALQMFQSAPERFLLFPGAT 136 (136) Q Consensus 74 vnai----sngalp--lssksvdgvsvtylpledvqgdmkmlmtnqwgqqalqmfqsaperfllfpgat 136 (136) +++. +++++. ++|||++.|||.|-...-...+-..+..-++|||-++|..-.--=-...+|.. T Consensus 70 ~~a~~~~~~~~g~~G~vsSas~G~VSVSy~~~~~~~~~~~w~~~T~YGq~fwaL~~~~g~Gg~v~gG~~ 138 (167) T protein:vir:94 70 VNADGSITPGTGTVGRVANASEGSVSTSLAYSTPTGAGEAWFTQTPYGAMYWAMSAPFRSFHYVAAGLS 138 (167) T ss_pred hhhhcccccccccchheeeccccceeeeeecCCCCCchhhhhhcCHHHHHHHHHHHHhcccccccCCCC Confidence 2222 234443 89999999999997666566666689999999998887653211111222222 No 8 >protein:vir:78595 Length: 158 # NCBI annotation: BcepNY3gp07 # Family: family:all:664 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294844;genbank:gi:149882907;genbank:GeneID:5291066 Probab=91.06 E-value=0.0034 Score=34.08 Aligned_cols=126 Identities=20% Similarity=0.258 Sum_probs=66.8 Q ss_pred CC--------ccchh--hhhHHhhhhhHHHhhHHHHhhhhhhheeecchhhhcccccccccch-hhhhhHHHHhhhhccc Q lcl|NC_019930. 1 MT--------SYQDF--EFAQFFVGVTAQQIDKALVRVQAQWYGLLNGDLWASLPQPVQAGKI-DQMSDLLVAWYLAENY 69 (136) Q Consensus 1 mt--------syqdf--efaqffvgvtaqqidkalvrvqaqwygllngdlwaslpqpvqagki-dqmsdllvawylaeny 69 (136) |. ..++| .|-+| .-+...+|+-.+--.+ -+++++-|.| +++-|+. +.+-.|++|-+|+=+. T Consensus 1 ~~~~~~~v~Fd~a~FR~~fPeF-a~~pd~~i~~~~~~A~----~~~~~~~~~s---~~~~~~~r~~ll~LltAHll~L~~ 72 (158) T protein:vir:78 1 MSTPPYRITFDPAGFIAEYPEF-ATVATPRLQAMFNQAQ----TALLDNTGGS---PVTDDNVLRELFNMLVAHLLTLFG 72 (158) T ss_pred CCCCCceEEcChHHHHHhchhh-ccCCHHHHHHHHHHhh----hhhcCCCccc---cccChhHHHHHHHHHHHHHHHHhH Confidence 22 12233 12222 2244444433332221 2344444443 4555554 5667899999987543 Q ss_pred chhHhhhhccCcc-ccccccccceeEEe-eehhhhhhhhhhhhhhhhhHHHHHHHh----------cCcce--------- Q lcl|NC_019930. 70 PDSVVNAISNGAL-PLSSKSVDGVSVTY-LPLEDVQGDMKMLMTNQWGQQALQMFQ----------SAPER--------- 128 (136) Q Consensus 70 pdsvvnaisngal-plssksvdgvsvty-lpledvqgdmkmlmtnqwgqqalqmfq----------saper--------- 128 (136) .+. ..+ .+|+. .++|||++.|||.| .+..--...--.+..-++|||-++|.. ..||| T Consensus 73 ~~~-~~a-~~g~~G~isSas~G~VSVS~d~~~~t~~~~~~W~~~T~YG~~fwal~~~~~~Ggy~~gg~pe~~~~r~~g~~ 150 (158) T protein:vir:78 73 ATP-TSA-NSRPPGRLSSAAEGTVSSSFEFKLPEGSAIAPWYNQTQYGAMFWMATARYRSARYMVSGGSGIGTARAYGQP 150 (158) T ss_pred hhh-ccc-cCCcccceeeeeecceEEEEeecCccccchhHHhhcCHHHHHHHHHHHHhcccccccccCCcccceeecCcc Confidence 221 111 23332 68999999999999 333111111234677789999888754 34665 Q ss_pred EeeccCCC Q lcl|NC_019930. 129 FLLFPGAT 136 (136) Q Consensus 129 fllfpgat 136 (136) |.-.||.. T Consensus 151 ~~~~~~~~ 158 (158) T protein:vir:78 151 TIQIPGGV 158 (158) T ss_pred eeecCCCC Confidence 55566666 No 9 >protein:vir:106739 Length: 158 # NCBI annotation: gp08 # Family: family:all:664 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944316;genbank:gi:38638615;genbank:GeneID:2657368 Probab=91.06 E-value=0.0034 Score=34.08 Aligned_cols=126 Identities=20% Similarity=0.258 Sum_probs=66.8 Q ss_pred CC--------ccchh--hhhHHhhhhhHHHhhHHHHhhhhhhheeecchhhhcccccccccch-hhhhhHHHHhhhhccc Q lcl|NC_019930. 1 MT--------SYQDF--EFAQFFVGVTAQQIDKALVRVQAQWYGLLNGDLWASLPQPVQAGKI-DQMSDLLVAWYLAENY 69 (136) Q Consensus 1 mt--------syqdf--efaqffvgvtaqqidkalvrvqaqwygllngdlwaslpqpvqagki-dqmsdllvawylaeny 69 (136) |. ..++| .|-+| .-+...+|+-.+--.+ -+++++-|.| +++-|+. +.+-.|++|-+|+=+. T Consensus 1 ~~~~~~~v~Fd~a~FR~~fPeF-a~~pd~~i~~~~~~A~----~~~~~~~~~s---~~~~~~~r~~ll~LltAHll~L~~ 72 (158) T protein:vir:10 1 MSTPPYRITFDPAGFIAEYPEF-ATVATPRLQAMFNQAQ----TALLDNTGGS---PVTDDNVLRELFNMLVAHLLTLFG 72 (158) T ss_pred CCCCCceEEcChHHHHHhchhh-ccCCHHHHHHHHHHhh----hhhcCCCccc---cccChhHHHHHHHHHHHHHHHHhH Confidence 22 12233 12222 2244444433332221 2344444443 4555554 5667899999987543 Q ss_pred chhHhhhhccCcc-ccccccccceeEEe-eehhhhhhhhhhhhhhhhhHHHHHHHh----------cCcce--------- Q lcl|NC_019930. 70 PDSVVNAISNGAL-PLSSKSVDGVSVTY-LPLEDVQGDMKMLMTNQWGQQALQMFQ----------SAPER--------- 128 (136) Q Consensus 70 pdsvvnaisngal-plssksvdgvsvty-lpledvqgdmkmlmtnqwgqqalqmfq----------saper--------- 128 (136) .+. ..+ .+|+. .++|||++.|||.| .+..--...--.+..-++|||-++|.. ..||| T Consensus 73 ~~~-~~a-~~g~~G~isSas~G~VSVS~d~~~~t~~~~~~W~~~T~YG~~fwal~~~~~~Ggy~~gg~pe~~~~r~~g~~ 150 (158) T protein:vir:10 73 ATP-TSA-NSRPPGRLSSAAEGTVSSSFEFKLPEGSAIAPWYNQTQYGAMFWMATARYRSARYMVSGGSGIGTARAYGQP 150 (158) T ss_pred hhh-ccc-cCCcccceeeeeecceEEEEeecCccccchhHHhhcCHHHHHHHHHHHHhcccccccccCCcccceeecCcc Confidence 221 111 23332 68999999999999 333111111234677789999888754 34665 Q ss_pred EeeccCCC Q lcl|NC_019930. 129 FLLFPGAT 136 (136) Q Consensus 129 fllfpgat 136 (136) |.-.||.. T Consensus 151 ~~~~~~~~ 158 (158) T protein:vir:10 151 TIQIPGGV 158 (158) T ss_pred eeecCCCC Confidence 55566666 No 10 >protein:vir:107702 Length: 136 # NCBI annotation: hypothetical protein # Family: family:all:5122 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003900;genbank:gi:45686316;genbank:GeneID:2773042 Probab=16.67 E-value=3.6 Score=17.54 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=60.6 Q ss_pred CCccchhhhhH----H---hhhhhH----HHhhHHHHhhhhhhheeecchhhhcccccccccch-hhhhhHHHHhhhhcc Q lcl|NC_019930. 1 MTSYQDFEFAQ----F---FVGVTA----QQIDKALVRVQAQWYGLLNGDLWASLPQPVQAGKI-DQMSDLLVAWYLAEN 68 (136) Q Consensus 1 mtsyqdfefaq----f---fvgvta----qqidkalvrvqaqwygllngdlwaslpqpvqagki-dqmsdllvawylaen 68 (136) |..---.+.-+ . |--|.. +.||-|-..|- -++| ||+ ++--.++.|-.|.-+ T Consensus 1 ~~~~~~~~~ve~fR~l~PeF~dvPde~i~~~~d~A~~~v~--------~~~~---------Gk~y~~al~lltAHLl~l~ 63 (136) T protein:vir:10 1 MNQETLIAVVEQMRKLVPALRKVPDETLYAWVEMAELFVC--------QKTF---------KDAYVKALALYALHLAFLD 63 (136) T ss_pred CCchHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHhhc--------CCCC---------hhHHHHHHHHHHHHHHhcc Confidence 21100000000 0 011111 11222222221 1122 333 333456667666433 Q ss_pred cchhHhhhhccC--ccccccccccceeEEeeehhhhhhhhhhhhhhhhhHHHHHHHhcCcceEeeccCCC Q lcl|NC_019930. 69 YPDSVVNAISNG--ALPLSSKSVDGVSVTYLPLEDVQGDMKMLMTNQWGQQALQMFQSAPERFLLFPGAT 136 (136) Q Consensus 69 ypdsvvnaisng--alplssksvdgvsvtylpledvqgdmkmlmtnqwgqqalqmfqsaperfllfpgat 136 (136) .--+--++..++ .--.||...+-|||+|-|...-..| ..|.+-.|||+-+......--+|-|--|.. T Consensus 64 ~~~~~~~~~~~~~s~rv~ssat~GevSVS~a~~s~~~s~-~WL~~TpyGq~y~aL~k~~~gGf~l~t~~~ 132 (136) T protein:vir:10 64 GALKGEDEDLESYSRRVTSFSLSGEFSQTFGEVTKNQSG-DMMLSTPWGKMFEQLKARRRGRFALMTGLR 132 (136) T ss_pred cccccccccccccccceehheeccceeEeeccccCchhh-HhhhcCHHHHHHHHHHhhcccchhhhhccc Confidence 211111111111 1124666789999999988766665 789999999999999998888898877666 Done!