Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : SPN3UB | Genbank acc : NC_019545

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 71

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|NC_019545.1_cdsid_YP_007010977.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_019545.1_cdsid_YP_007010973.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_019545.1_cdsid_YP_007010972.1	Blast (e-value=0)
MTP	14	lcl\|NC_019545.1_cdsid_YP_007010984.1	Blast (e-value=1e-133)
Sheath	NOT FOUND
Ad1	9	lcl\|NC_019545.1_cdsid_YP_007010979.1	HHsearch (proba=100.00%)
Hc1	11	lcl\|NC_019545.1_cdsid_YP_007010981.1	HHsearch (proba=100.00%)
Ne1	12	lcl\|NC_019545.1_cdsid_YP_007010982.1	HHsearch (proba=100.00%)
Tc1	13	lcl\|NC_019545.1_cdsid_YP_007010983.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:105778 protein:vir:107687 protein:vir:5255	ES18 T1 Aaphi23	99 % 15 % 15 %
Portal	protein:vir:105782 protein:vir:104338 protein:vir:103219	ES18 RTP JK06	78 % 16 % 16 %
TermL	protein:vir:105705 protein:vir:96782 protein:vir:95761	ES18 phiHSIC SMP	98 % 42 % 25 %
MTP	protein:vir:105771 protein:vir:93600 protein:vir:196	ES18 phi 4795 HK97	97 % 21 % 19 %
Ad1	protein:vir:105776 protein:vir:104344 protein:vir:107756	ES18 RTP BcepB1A	100 % 19 % 16 %
Hc1	protein:vir:105774	ES18	89 %
Ne1	protein:vir:105773 protein:vir:743 protein:vir:98409	ES18 Tuc2009 ul36	72 % 22 % 21 %
Tc1	protein:vir:105772 protein:vir:9648 protein:vir:98629	ES18 315.1 phi3396	93 % 15 % 17 %